[med-svn] [qualimap] 02/03: Follow Bas' hints to prove fake maven rules

[Andreas Tille]

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tille pushed a commit to branch master
in repository qualimap.

commit d78dfde46263fa357dfaaaa5b7c5f15e69358e97
Author: Andreas Tille <tille at debian.org>
Date:   Tue Nov 24 12:23:18 2015 +0100

    Follow Bas' hints to prove fake maven rules
---
 debian/maven.rules |  3 ++-
 debian/rules       | 18 ++++++++++++++++++
 2 files changed, 20 insertions(+), 1 deletion(-)

diff --git a/debian/maven.rules b/debian/maven.rules
index 710352e..0697dbe 100644
--- a/debian/maven.rules
+++ b/debian/maven.rules
@@ -2,4 +2,5 @@
 junit junit jar s/4\..*/4.x/ * *
 org.bioinfo.ngs qualimap jar * * *
 org.bioinfo.ngs qualimap jar s/.*/debian/ * *
-s/org.bioinfo/org.biojava/ s/bioinfo-ngs/nbio/ * s/.*/debian/ * *
+net.sf picard jar s/.*/fake/ * *
+net.sf samtools jar s/.*/fake/ * *
diff --git a/debian/rules b/debian/rules
index c66a1c6..3376dda 100755
--- a/debian/rules
+++ b/debian/rules
@@ -20,5 +20,23 @@ JAVA_HOME=/usr/lib/jvm/default-java
 %:
 	dh $@ --buildsystem=maven --with javahelper
 
+override_dh_auto_configure:
+	dh_auto_configure
+	mvn --offline install:install-file \
+        -Dmaven.repo.local=$(CURDIR)/debian/maven-repo \
+        -Dfile=/usr/share/java/sam.jar \
+        -DgroupId=net/sf \
+        -DartifactId=samtools \
+        -Dversion=fake \
+        -Dpackaging=jar
+
+	mvn --offline install:install-file \
+        -Dmaven.repo.local=$(CURDIR)/debian/maven-repo \
+        -Dfile=/usr/share/java/picard.jar \
+        -DgroupId=net/sf \
+        -DartifactId=picard \
+        -Dversion=fake \
+        -Dpackaging=jar
+
 get-orig-source:
 	uscan --verbose --force-download --repack --compress xz

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