[med-svn] [python-mne] 05/13: Imported Upstream version 0.10.1+dfsg
Yaroslav Halchenko
debian at onerussian.com
Wed Nov 25 16:21:11 UTC 2015
This is an automated email from the git hooks/post-receive script.
yoh pushed a commit to branch master
in repository python-mne.
commit 1c70a886bb626f19aed342c35ee7763f19e98dbd
Author: jaeilepp <jaeilepp at student.jyu.fi>
Date: Wed Nov 25 03:57:47 2015 -0500
Imported Upstream version 0.10.1+dfsg
---
.mailmap | 10 +
.travis.yml | 16 +-
README.rst | 2 +-
appveyor.yml | 3 +-
debian/JS/bootstrap/bootstrap.css | 5785 --------------------
debian/JS/bootstrap/bootstrap.js | 1951 -------
debian/changelog | 65 -
debian/compat | 1 -
debian/control | 55 -
debian/copyright | 150 -
debian/docs | 1 -
debian/links | 6 -
debian/manpages | 1 -
debian/mne.1 | 33 -
...t_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff | 59 -
debian/patches/debian_paths | 56 -
debian/patches/series | 2 -
debian/pycompat | 1 -
debian/rules | 23 -
debian/source/format | 1 -
debian/watch | 4 -
doc/advanced_setup.rst | 10 +-
doc/sphinxext/numpy_ext/docscrape.py | 5 +-
doc/whats_new.rst | 33 +-
examples/decoding/plot_decoding_csp_eeg.py | 2 +-
examples/decoding/plot_decoding_csp_space.py | 2 +-
examples/visualization/plot_clickable_image.py | 2 +-
examples/visualization/plot_topography.py | 4 +-
mne/__init__.py | 2 +-
mne/connectivity/spectral.py | 6 +-
mne/cov.py | 3 +-
mne/decoding/base.py | 13 +-
mne/decoding/csp.py | 9 +-
mne/epochs.py | 20 +-
mne/fixes.py | 27 +-
mne/io/brainvision/brainvision.py | 16 +-
mne/io/meas_info.py | 8 +-
mne/parallel.py | 4 +-
mne/preprocessing/ica.py | 20 +-
mne/realtime/epochs.py | 7 +-
mne/report.py | 9 +-
mne/tests/test_docstring_parameters.py | 3 +-
mne/tests/test_filter.py | 4 +-
mne/tests/test_report.py | 4 +
mne/utils.py | 10 +-
mne/viz/_3d.py | 4 +-
mne/viz/topo.py | 2 +-
47 files changed, 161 insertions(+), 8293 deletions(-)
diff --git a/.mailmap b/.mailmap
index 90afd41..ccdd620 100644
--- a/.mailmap
+++ b/.mailmap
@@ -24,6 +24,7 @@ Denis A. Engemann <denis.engemann at gmail.com> Denis A. Engemann <denisaengemann at D
Daniel Strohmeier <daniel.strohmeier at googlemail.com> joewalter <daniel.strohmeier at googlemail.com>
Daniel Strohmeier <daniel.strohmeier at googlemail.com> Daniel Strohmeier <daniel.strohmeier at googlemail.com>
Dan G. Wakeman <dgwakeman at gmail.com>
+Dan G. Wakeman <dgwakeman at gmail.com> dgwakeman <dgwakeman at users.noreply.github.com>
Teon Brooks <teon.brooks at gmail.com>
Teon Brooks <teon.brooks at gmail.com> Teon <teon at nyu.edu>
Teon Brooks <teon.brooks at gmail.com> Teon Brooks <teon at nyu.edu>
@@ -40,6 +41,7 @@ Martin Billinger <martin.billinger at tugraz.at> kazemakase <kazemakase at users.norep
Martin Billinger <martin.billinger at tugraz.at> Martin Billinger <flkazemakase at gmail.com>
Martin Billinger <martin.billinger at tugraz.at> Martin <martin.billinger at tugraz.at>
Mainak Jas <mainakjas at gmail.com> Mainak <mainakjas at gmail.com>
+Mainak Jas <mainakjas at gmail.com> Mainak Jas <mainak.jas at telecom-paristech.fr>
Mainak Jas <mainakjas at gmail.com> mainakjas <mainakjas at users.noreply.github.com>
Mainak Jas <mainakjas at gmail.com> Mainak Jas <mainak at neuro.hut.fi> <mainakjas at users.noreply.github.com>
Dan G. Wakeman <dgwakeman at gmail.com> Daniel Wakeman <dwakeman at marcie.nmr.mgh.harvard.edu>
@@ -59,4 +61,12 @@ Manoj Kumar <manojkumarsivaraj334 at gmail.com> MechCoder <manojkumarsivaraj334 at gma
Ingoo Lee <dlsrnsladlek at naver.com> dlsrnsi <dlsrnsladlek at naver.com>
Jona Sassenhagen <jona.sassenhagen at staff.uni-marburg.de>
Jona Sassenhagen <jona.sassenhagen at gmail.com> jona-sassenhagen <jona.sassenhagen at gmail.com>
+Jona Sassenhagen <jona.sassenhagen at gmail.com> jona <jona.sassenhagen at gmail.com>
+Jona Sassenhagen <jona.sassenhagen at gmail.com> sassenha <sassenha at fiebach1.rz.uni-frankfurt.de>
Yousra Bekhti <yousra.bekhti at gmail.com> Yousra BEKHTI <yousra.bekhti at gmail.com>
+Ross Maddox <rkmaddox at uw.edu> unknown <rkmaddox at uw.edu>
+Jaakko Leppakangas <jaeilepp at student.jyu.fi> jaeilepp <jaeilepp at student.jyu.fi>
+Jair Montoya <montoya.jair.m at gmail.com> jmontoyam <montoya.jair.m at gmail.com>
+Natalie Klein <neklein at andrew.cmu.edu> natalieklein <neklein at andrew.cmu.edu>
+Daniel McCloy <dan.mccloy at gmail.com> drammock <dan.mccloy at gmail.com>
+Fede Raimondo <slashack at gmail.com> Fede <slashack at gmail.com>
diff --git a/.travis.yml b/.travis.yml
index ffaf453..e13e593 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -17,7 +17,7 @@ env:
# If we change the old-version run to be a different Python version
# from 2.6, then we need to update mne.utils.clean_warning_registry.
#
- # Run one test (3.4) with a non-default stim channel to make sure our
+ # Run one test (3.5) with a non-default stim channel to make sure our
# tests are explicit about channels.
#
# Must force libpng version to avoid silly libpng.so.15 error (MPL 1.1 needs it)
@@ -25,8 +25,8 @@ env:
# Conda currently has packaging bug with mayavi/traits/numpy where 1.10 can't be used
# but breaks scipy; hopefully eventually the NUMPY=1.9 on 2.7 full can be removed
- PYTHON=2.7 DEPS=full TEST_LOCATION=src NUMPY="=1.9" SCIPY="=0.16"
- - PYTHON=2.7 DEPS=nodata TEST_LOCATION=src MNE_DONTWRITE_HOME=true # also runs flake8
- - PYTHON=3.4 DEPS=full TEST_LOCATION=install MNE_STIM_CHANNEL=STI101
+ - PYTHON=2.7 DEPS=nodata TEST_LOCATION=src MNE_DONTWRITE_HOME=true MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TEST=1 # also runs flake8
+ - PYTHON=3.5 DEPS=full TEST_LOCATION=install MNE_STIM_CHANNEL=STI101
- PYTHON=2.6 DEPS=full TEST_LOCATION=src NUMPY="=1.7" SCIPY="=0.11" MPL="=1.1" LIBPNG="=1.5" SKLEARN="=0.11" PANDAS="=0.8"
- PYTHON=2.7 DEPS=minimal TEST_LOCATION=src
@@ -34,7 +34,7 @@ env:
before_install:
- wget -q http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
- chmod +x miniconda.sh
- - ./miniconda.sh -b
+ - ./miniconda.sh -b -p /home/travis/miniconda
- export PATH=/home/travis/miniconda/bin:$PATH
- conda update --yes --quiet conda
# We need to create a (fake) display on Travis (allows Mayavi tests to run)
@@ -55,7 +55,7 @@ install:
source ${MNE_ROOT}/bin/mne_setup_sh;
conda install --yes --quiet $ENSURE_PACKAGES pandas$PANDAS scikit-learn$SKLEARN patsy h5py pillow;
pip install -q joblib nibabel;
- if [ "${PYTHON}" == "3.4" ]; then
+ if [ "${PYTHON}" == "3.5" ]; then
conda install --yes --quiet $ENSURE_PACKAGES ipython;
else
conda install --yes --quiet $ENSURE_PACKAGES ipython==1.1.0 statsmodels pandas$PANDAS;
@@ -123,7 +123,7 @@ install:
else
cd ${SRC_DIR};
fi;
- - if [ "${PYTHON}" != "3.4" ]; then
+ - if [ "${PYTHON}" != "3.5" ]; then
COVERAGE=--with-coverage;
else
COVERAGE=;
@@ -137,8 +137,8 @@ script:
after_success:
# Need to run from source dir to exectue "git" commands
- # Coverage not collected for 3.4, so don't report it
- - if [ "${TEST_LOCATION}" == "src" ] && [ "${PYTHON}" != "3.4" ]; then
+ # Coverage not collected for 3.5, so don't report it
+ - if [ "${TEST_LOCATION}" == "src" ] && [ "${PYTHON}" != "3.5" ]; then
echo "Running coveralls";
cd ${SRC_DIR};
coveralls;
diff --git a/README.rst b/README.rst
index be2df09..4579fa9 100644
--- a/README.rst
+++ b/README.rst
@@ -13,7 +13,7 @@
.. _Coveralls: https://coveralls.io/r/mne-tools/mne-python?branch=master
.. |Zenodo| image:: https://zenodo.org/badge/5822/mne-tools/mne-python.svg
-.. _Zenodo: http://dx.doi.org/10.5281/zenodo.17856
+.. _Zenodo: https://zenodo.org/badge/latestdoi/5822/mne-tools/mne-python
`mne-python <http://martinos.org/mne/mne-python.html>`_
=======================================================
diff --git a/appveyor.yml b/appveyor.yml
index 82e70d4..9011b9b 100644
--- a/appveyor.yml
+++ b/appveyor.yml
@@ -22,7 +22,8 @@ install:
- "python -c \"import struct; print(struct.calcsize('P') * 8)\""
# Install the dependencies of the project (skip nibabel for speed)
- - "conda install --yes --quiet setuptools numpy scipy matplotlib scikit-learn nose mayavi pandas h5py PIL patsy"
+ - "conda create -n testenv --yes --quiet setuptools numpy scipy matplotlib scikit-learn nose mayavi pandas h5py PIL patsy pyside"
+ - "activate testenv"
- "pip install nose-timer nibabel nitime"
- "python setup.py develop"
- "SET MNE_SKIP_NETWORK_TESTS=1"
diff --git a/debian/JS/bootstrap/bootstrap.css b/debian/JS/bootstrap/bootstrap.css
deleted file mode 100644
index 7f36651..0000000
--- a/debian/JS/bootstrap/bootstrap.css
+++ /dev/null
@@ -1,5785 +0,0 @@
-/*!
- * Bootstrap v3.1.1 (http://getbootstrap.com)
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- */
-
-/*! normalize.css v3.0.0 | MIT License | git.io/normalize */
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- font-family: sans-serif;
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- background-image: linear-gradient(to right, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
- filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#80000000', endColorstr='#00000000', GradientType=1);
- background-repeat: repeat-x;
-}
-.carousel-control.right {
- right: 0;
- left: auto;
- background-image: -webkit-linear-gradient(left, color-stop(rgba(0, 0, 0, .0001) 0%), color-stop(rgba(0, 0, 0, .5) 100%));
- background-image: linear-gradient(to right, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
- filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#00000000', endColorstr='#80000000', GradientType=1);
- background-repeat: repeat-x;
-}
-.carousel-control:hover,
-.carousel-control:focus {
- color: #fff;
- text-decoration: none;
- filter: alpha(opacity=90);
- outline: none;
- opacity: .9;
-}
-.carousel-control .icon-prev,
-.carousel-control .icon-next,
-.carousel-control .glyphicon-chevron-left,
-.carousel-control .glyphicon-chevron-right {
- position: absolute;
- top: 50%;
- z-index: 5;
- display: inline-block;
-}
-.carousel-control .icon-prev,
-.carousel-control .glyphicon-chevron-left {
- left: 50%;
-}
-.carousel-control .icon-next,
-.carousel-control .glyphicon-chevron-right {
- right: 50%;
-}
-.carousel-control .icon-prev,
-.carousel-control .icon-next {
- width: 20px;
- height: 20px;
- margin-top: -10px;
- margin-left: -10px;
- font-family: serif;
-}
-.carousel-control .icon-prev:before {
- content: '\2039';
-}
-.carousel-control .icon-next:before {
- content: '\203a';
-}
-.carousel-indicators {
- position: absolute;
- bottom: 10px;
- left: 50%;
- z-index: 15;
- width: 60%;
- padding-left: 0;
- margin-left: -30%;
- text-align: center;
- list-style: none;
-}
-.carousel-indicators li {
- display: inline-block;
- width: 10px;
- height: 10px;
- margin: 1px;
- text-indent: -999px;
- cursor: pointer;
- background-color: #000 \9;
- background-color: rgba(0, 0, 0, 0);
- border: 1px solid #fff;
- border-radius: 10px;
-}
-.carousel-indicators .active {
- width: 12px;
- height: 12px;
- margin: 0;
- background-color: #fff;
-}
-.carousel-caption {
- position: absolute;
- right: 15%;
- bottom: 20px;
- left: 15%;
- z-index: 10;
- padding-top: 20px;
- padding-bottom: 20px;
- color: #fff;
- text-align: center;
- text-shadow: 0 1px 2px rgba(0, 0, 0, .6);
-}
-.carousel-caption .btn {
- text-shadow: none;
-}
- at media screen and (min-width: 768px) {
- .carousel-control .glyphicon-chevron-left,
- .carousel-control .glyphicon-chevron-right,
- .carousel-control .icon-prev,
- .carousel-control .icon-next {
- width: 30px;
- height: 30px;
- margin-top: -15px;
- margin-left: -15px;
- font-size: 30px;
- }
- .carousel-caption {
- right: 20%;
- left: 20%;
- padding-bottom: 30px;
- }
- .carousel-indicators {
- bottom: 20px;
- }
-}
-.clearfix:before,
-.clearfix:after,
-.container:before,
-.container:after,
-.container-fluid:before,
-.container-fluid:after,
-.row:before,
-.row:after,
-.form-horizontal .form-group:before,
-.form-horizontal .form-group:after,
-.btn-toolbar:before,
-.btn-toolbar:after,
-.btn-group-vertical > .btn-group:before,
-.btn-group-vertical > .btn-group:after,
-.nav:before,
-.nav:after,
-.navbar:before,
-.navbar:after,
-.navbar-header:before,
-.navbar-header:after,
-.navbar-collapse:before,
-.navbar-collapse:after,
-.pager:before,
-.pager:after,
-.panel-body:before,
-.panel-body:after,
-.modal-footer:before,
-.modal-footer:after {
- display: table;
- content: " ";
-}
-.clearfix:after,
-.container:after,
-.container-fluid:after,
-.row:after,
-.form-horizontal .form-group:after,
-.btn-toolbar:after,
-.btn-group-vertical > .btn-group:after,
-.nav:after,
-.navbar:after,
-.navbar-header:after,
-.navbar-collapse:after,
-.pager:after,
-.panel-body:after,
-.modal-footer:after {
- clear: both;
-}
-.center-block {
- display: block;
- margin-right: auto;
- margin-left: auto;
-}
-.pull-right {
- float: right !important;
-}
-.pull-left {
- float: left !important;
-}
-.hide {
- display: none !important;
-}
-.show {
- display: block !important;
-}
-.invisible {
- visibility: hidden;
-}
-.text-hide {
- font: 0/0 a;
- color: transparent;
- text-shadow: none;
- background-color: transparent;
- border: 0;
-}
-.hidden {
- display: none !important;
- visibility: hidden !important;
-}
-.affix {
- position: fixed;
-}
- at -ms-viewport {
- width: device-width;
-}
-.visible-xs,
-.visible-sm,
-.visible-md,
-.visible-lg {
- display: none !important;
-}
- at media (max-width: 767px) {
- .visible-xs {
- display: block !important;
- }
- table.visible-xs {
- display: table;
- }
- tr.visible-xs {
- display: table-row !important;
- }
- th.visible-xs,
- td.visible-xs {
- display: table-cell !important;
- }
-}
- at media (min-width: 768px) and (max-width: 991px) {
- .visible-sm {
- display: block !important;
- }
- table.visible-sm {
- display: table;
- }
- tr.visible-sm {
- display: table-row !important;
- }
- th.visible-sm,
- td.visible-sm {
- display: table-cell !important;
- }
-}
- at media (min-width: 992px) and (max-width: 1199px) {
- .visible-md {
- display: block !important;
- }
- table.visible-md {
- display: table;
- }
- tr.visible-md {
- display: table-row !important;
- }
- th.visible-md,
- td.visible-md {
- display: table-cell !important;
- }
-}
- at media (min-width: 1200px) {
- .visible-lg {
- display: block !important;
- }
- table.visible-lg {
- display: table;
- }
- tr.visible-lg {
- display: table-row !important;
- }
- th.visible-lg,
- td.visible-lg {
- display: table-cell !important;
- }
-}
- at media (max-width: 767px) {
- .hidden-xs {
- display: none !important;
- }
-}
- at media (min-width: 768px) and (max-width: 991px) {
- .hidden-sm {
- display: none !important;
- }
-}
- at media (min-width: 992px) and (max-width: 1199px) {
- .hidden-md {
- display: none !important;
- }
-}
- at media (min-width: 1200px) {
- .hidden-lg {
- display: none !important;
- }
-}
-.visible-print {
- display: none !important;
-}
- at media print {
- .visible-print {
- display: block !important;
- }
- table.visible-print {
- display: table;
- }
- tr.visible-print {
- display: table-row !important;
- }
- th.visible-print,
- td.visible-print {
- display: table-cell !important;
- }
-}
- at media print {
- .hidden-print {
- display: none !important;
- }
-}
-/*# sourceMappingURL=bootstrap.css.map */
diff --git a/debian/JS/bootstrap/bootstrap.js b/debian/JS/bootstrap/bootstrap.js
deleted file mode 100644
index 8ae571b..0000000
--- a/debian/JS/bootstrap/bootstrap.js
+++ /dev/null
@@ -1,1951 +0,0 @@
-/*!
- * Bootstrap v3.1.1 (http://getbootstrap.com)
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- */
-
-if (typeof jQuery === 'undefined') { throw new Error('Bootstrap\'s JavaScript requires jQuery') }
-
-/* ========================================================================
- * Bootstrap: transition.js v3.1.1
- * http://getbootstrap.com/javascript/#transitions
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // CSS TRANSITION SUPPORT (Shoutout: http://www.modernizr.com/)
- // ============================================================
-
- function transitionEnd() {
- var el = document.createElement('bootstrap')
-
- var transEndEventNames = {
- 'WebkitTransition' : 'webkitTransitionEnd',
- 'MozTransition' : 'transitionend',
- 'OTransition' : 'oTransitionEnd otransitionend',
- 'transition' : 'transitionend'
- }
-
- for (var name in transEndEventNames) {
- if (el.style[name] !== undefined) {
- return { end: transEndEventNames[name] }
- }
- }
-
- return false // explicit for ie8 ( ._.)
- }
-
- // http://blog.alexmaccaw.com/css-transitions
- $.fn.emulateTransitionEnd = function (duration) {
- var called = false, $el = this
- $(this).one($.support.transition.end, function () { called = true })
- var callback = function () { if (!called) $($el).trigger($.support.transition.end) }
- setTimeout(callback, duration)
- return this
- }
-
- $(function () {
- $.support.transition = transitionEnd()
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: alert.js v3.1.1
- * http://getbootstrap.com/javascript/#alerts
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // ALERT CLASS DEFINITION
- // ======================
-
- var dismiss = '[data-dismiss="alert"]'
- var Alert = function (el) {
- $(el).on('click', dismiss, this.close)
- }
-
- Alert.prototype.close = function (e) {
- var $this = $(this)
- var selector = $this.attr('data-target')
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
- }
-
- var $parent = $(selector)
-
- if (e) e.preventDefault()
-
- if (!$parent.length) {
- $parent = $this.hasClass('alert') ? $this : $this.parent()
- }
-
- $parent.trigger(e = $.Event('close.bs.alert'))
-
- if (e.isDefaultPrevented()) return
-
- $parent.removeClass('in')
-
- function removeElement() {
- $parent.trigger('closed.bs.alert').remove()
- }
-
- $.support.transition && $parent.hasClass('fade') ?
- $parent
- .one($.support.transition.end, removeElement)
- .emulateTransitionEnd(150) :
- removeElement()
- }
-
-
- // ALERT PLUGIN DEFINITION
- // =======================
-
- var old = $.fn.alert
-
- $.fn.alert = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.alert')
-
- if (!data) $this.data('bs.alert', (data = new Alert(this)))
- if (typeof option == 'string') data[option].call($this)
- })
- }
-
- $.fn.alert.Constructor = Alert
-
-
- // ALERT NO CONFLICT
- // =================
-
- $.fn.alert.noConflict = function () {
- $.fn.alert = old
- return this
- }
-
-
- // ALERT DATA-API
- // ==============
-
- $(document).on('click.bs.alert.data-api', dismiss, Alert.prototype.close)
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: button.js v3.1.1
- * http://getbootstrap.com/javascript/#buttons
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // BUTTON PUBLIC CLASS DEFINITION
- // ==============================
-
- var Button = function (element, options) {
- this.$element = $(element)
- this.options = $.extend({}, Button.DEFAULTS, options)
- this.isLoading = false
- }
-
- Button.DEFAULTS = {
- loadingText: 'loading...'
- }
-
- Button.prototype.setState = function (state) {
- var d = 'disabled'
- var $el = this.$element
- var val = $el.is('input') ? 'val' : 'html'
- var data = $el.data()
-
- state = state + 'Text'
-
- if (!data.resetText) $el.data('resetText', $el[val]())
-
- $el[val](data[state] || this.options[state])
-
- // push to event loop to allow forms to submit
- setTimeout($.proxy(function () {
- if (state == 'loadingText') {
- this.isLoading = true
- $el.addClass(d).attr(d, d)
- } else if (this.isLoading) {
- this.isLoading = false
- $el.removeClass(d).removeAttr(d)
- }
- }, this), 0)
- }
-
- Button.prototype.toggle = function () {
- var changed = true
- var $parent = this.$element.closest('[data-toggle="buttons"]')
-
- if ($parent.length) {
- var $input = this.$element.find('input')
- if ($input.prop('type') == 'radio') {
- if ($input.prop('checked') && this.$element.hasClass('active')) changed = false
- else $parent.find('.active').removeClass('active')
- }
- if (changed) $input.prop('checked', !this.$element.hasClass('active')).trigger('change')
- }
-
- if (changed) this.$element.toggleClass('active')
- }
-
-
- // BUTTON PLUGIN DEFINITION
- // ========================
-
- var old = $.fn.button
-
- $.fn.button = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.button')
- var options = typeof option == 'object' && option
-
- if (!data) $this.data('bs.button', (data = new Button(this, options)))
-
- if (option == 'toggle') data.toggle()
- else if (option) data.setState(option)
- })
- }
-
- $.fn.button.Constructor = Button
-
-
- // BUTTON NO CONFLICT
- // ==================
-
- $.fn.button.noConflict = function () {
- $.fn.button = old
- return this
- }
-
-
- // BUTTON DATA-API
- // ===============
-
- $(document).on('click.bs.button.data-api', '[data-toggle^=button]', function (e) {
- var $btn = $(e.target)
- if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn')
- $btn.button('toggle')
- e.preventDefault()
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: carousel.js v3.1.1
- * http://getbootstrap.com/javascript/#carousel
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // CAROUSEL CLASS DEFINITION
- // =========================
-
- var Carousel = function (element, options) {
- this.$element = $(element)
- this.$indicators = this.$element.find('.carousel-indicators')
- this.options = options
- this.paused =
- this.sliding =
- this.interval =
- this.$active =
- this.$items = null
-
- this.options.pause == 'hover' && this.$element
- .on('mouseenter', $.proxy(this.pause, this))
- .on('mouseleave', $.proxy(this.cycle, this))
- }
-
- Carousel.DEFAULTS = {
- interval: 5000,
- pause: 'hover',
- wrap: true
- }
-
- Carousel.prototype.cycle = function (e) {
- e || (this.paused = false)
-
- this.interval && clearInterval(this.interval)
-
- this.options.interval
- && !this.paused
- && (this.interval = setInterval($.proxy(this.next, this), this.options.interval))
-
- return this
- }
-
- Carousel.prototype.getActiveIndex = function () {
- this.$active = this.$element.find('.item.active')
- this.$items = this.$active.parent().children()
-
- return this.$items.index(this.$active)
- }
-
- Carousel.prototype.to = function (pos) {
- var that = this
- var activeIndex = this.getActiveIndex()
-
- if (pos > (this.$items.length - 1) || pos < 0) return
-
- if (this.sliding) return this.$element.one('slid.bs.carousel', function () { that.to(pos) })
- if (activeIndex == pos) return this.pause().cycle()
-
- return this.slide(pos > activeIndex ? 'next' : 'prev', $(this.$items[pos]))
- }
-
- Carousel.prototype.pause = function (e) {
- e || (this.paused = true)
-
- if (this.$element.find('.next, .prev').length && $.support.transition) {
- this.$element.trigger($.support.transition.end)
- this.cycle(true)
- }
-
- this.interval = clearInterval(this.interval)
-
- return this
- }
-
- Carousel.prototype.next = function () {
- if (this.sliding) return
- return this.slide('next')
- }
-
- Carousel.prototype.prev = function () {
- if (this.sliding) return
- return this.slide('prev')
- }
-
- Carousel.prototype.slide = function (type, next) {
- var $active = this.$element.find('.item.active')
- var $next = next || $active[type]()
- var isCycling = this.interval
- var direction = type == 'next' ? 'left' : 'right'
- var fallback = type == 'next' ? 'first' : 'last'
- var that = this
-
- if (!$next.length) {
- if (!this.options.wrap) return
- $next = this.$element.find('.item')[fallback]()
- }
-
- if ($next.hasClass('active')) return this.sliding = false
-
- var e = $.Event('slide.bs.carousel', { relatedTarget: $next[0], direction: direction })
- this.$element.trigger(e)
- if (e.isDefaultPrevented()) return
-
- this.sliding = true
-
- isCycling && this.pause()
-
- if (this.$indicators.length) {
- this.$indicators.find('.active').removeClass('active')
- this.$element.one('slid.bs.carousel', function () {
- var $nextIndicator = $(that.$indicators.children()[that.getActiveIndex()])
- $nextIndicator && $nextIndicator.addClass('active')
- })
- }
-
- if ($.support.transition && this.$element.hasClass('slide')) {
- $next.addClass(type)
- $next[0].offsetWidth // force reflow
- $active.addClass(direction)
- $next.addClass(direction)
- $active
- .one($.support.transition.end, function () {
- $next.removeClass([type, direction].join(' ')).addClass('active')
- $active.removeClass(['active', direction].join(' '))
- that.sliding = false
- setTimeout(function () { that.$element.trigger('slid.bs.carousel') }, 0)
- })
- .emulateTransitionEnd($active.css('transition-duration').slice(0, -1) * 1000)
- } else {
- $active.removeClass('active')
- $next.addClass('active')
- this.sliding = false
- this.$element.trigger('slid.bs.carousel')
- }
-
- isCycling && this.cycle()
-
- return this
- }
-
-
- // CAROUSEL PLUGIN DEFINITION
- // ==========================
-
- var old = $.fn.carousel
-
- $.fn.carousel = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.carousel')
- var options = $.extend({}, Carousel.DEFAULTS, $this.data(), typeof option == 'object' && option)
- var action = typeof option == 'string' ? option : options.slide
-
- if (!data) $this.data('bs.carousel', (data = new Carousel(this, options)))
- if (typeof option == 'number') data.to(option)
- else if (action) data[action]()
- else if (options.interval) data.pause().cycle()
- })
- }
-
- $.fn.carousel.Constructor = Carousel
-
-
- // CAROUSEL NO CONFLICT
- // ====================
-
- $.fn.carousel.noConflict = function () {
- $.fn.carousel = old
- return this
- }
-
-
- // CAROUSEL DATA-API
- // =================
-
- $(document).on('click.bs.carousel.data-api', '[data-slide], [data-slide-to]', function (e) {
- var $this = $(this), href
- var $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
- var options = $.extend({}, $target.data(), $this.data())
- var slideIndex = $this.attr('data-slide-to')
- if (slideIndex) options.interval = false
-
- $target.carousel(options)
-
- if (slideIndex = $this.attr('data-slide-to')) {
- $target.data('bs.carousel').to(slideIndex)
- }
-
- e.preventDefault()
- })
-
- $(window).on('load', function () {
- $('[data-ride="carousel"]').each(function () {
- var $carousel = $(this)
- $carousel.carousel($carousel.data())
- })
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: collapse.js v3.1.1
- * http://getbootstrap.com/javascript/#collapse
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // COLLAPSE PUBLIC CLASS DEFINITION
- // ================================
-
- var Collapse = function (element, options) {
- this.$element = $(element)
- this.options = $.extend({}, Collapse.DEFAULTS, options)
- this.transitioning = null
-
- if (this.options.parent) this.$parent = $(this.options.parent)
- if (this.options.toggle) this.toggle()
- }
-
- Collapse.DEFAULTS = {
- toggle: true
- }
-
- Collapse.prototype.dimension = function () {
- var hasWidth = this.$element.hasClass('width')
- return hasWidth ? 'width' : 'height'
- }
-
- Collapse.prototype.show = function () {
- if (this.transitioning || this.$element.hasClass('in')) return
-
- var startEvent = $.Event('show.bs.collapse')
- this.$element.trigger(startEvent)
- if (startEvent.isDefaultPrevented()) return
-
- var actives = this.$parent && this.$parent.find('> .panel > .in')
-
- if (actives && actives.length) {
- var hasData = actives.data('bs.collapse')
- if (hasData && hasData.transitioning) return
- actives.collapse('hide')
- hasData || actives.data('bs.collapse', null)
- }
-
- var dimension = this.dimension()
-
- this.$element
- .removeClass('collapse')
- .addClass('collapsing')
- [dimension](0)
-
- this.transitioning = 1
-
- var complete = function () {
- this.$element
- .removeClass('collapsing')
- .addClass('collapse in')
- [dimension]('auto')
- this.transitioning = 0
- this.$element.trigger('shown.bs.collapse')
- }
-
- if (!$.support.transition) return complete.call(this)
-
- var scrollSize = $.camelCase(['scroll', dimension].join('-'))
-
- this.$element
- .one($.support.transition.end, $.proxy(complete, this))
- .emulateTransitionEnd(350)
- [dimension](this.$element[0][scrollSize])
- }
-
- Collapse.prototype.hide = function () {
- if (this.transitioning || !this.$element.hasClass('in')) return
-
- var startEvent = $.Event('hide.bs.collapse')
- this.$element.trigger(startEvent)
- if (startEvent.isDefaultPrevented()) return
-
- var dimension = this.dimension()
-
- this.$element
- [dimension](this.$element[dimension]())
- [0].offsetHeight
-
- this.$element
- .addClass('collapsing')
- .removeClass('collapse')
- .removeClass('in')
-
- this.transitioning = 1
-
- var complete = function () {
- this.transitioning = 0
- this.$element
- .trigger('hidden.bs.collapse')
- .removeClass('collapsing')
- .addClass('collapse')
- }
-
- if (!$.support.transition) return complete.call(this)
-
- this.$element
- [dimension](0)
- .one($.support.transition.end, $.proxy(complete, this))
- .emulateTransitionEnd(350)
- }
-
- Collapse.prototype.toggle = function () {
- this[this.$element.hasClass('in') ? 'hide' : 'show']()
- }
-
-
- // COLLAPSE PLUGIN DEFINITION
- // ==========================
-
- var old = $.fn.collapse
-
- $.fn.collapse = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.collapse')
- var options = $.extend({}, Collapse.DEFAULTS, $this.data(), typeof option == 'object' && option)
-
- if (!data && options.toggle && option == 'show') option = !option
- if (!data) $this.data('bs.collapse', (data = new Collapse(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.collapse.Constructor = Collapse
-
-
- // COLLAPSE NO CONFLICT
- // ====================
-
- $.fn.collapse.noConflict = function () {
- $.fn.collapse = old
- return this
- }
-
-
- // COLLAPSE DATA-API
- // =================
-
- $(document).on('click.bs.collapse.data-api', '[data-toggle=collapse]', function (e) {
- var $this = $(this), href
- var target = $this.attr('data-target')
- || e.preventDefault()
- || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7
- var $target = $(target)
- var data = $target.data('bs.collapse')
- var option = data ? 'toggle' : $this.data()
- var parent = $this.attr('data-parent')
- var $parent = parent && $(parent)
-
- if (!data || !data.transitioning) {
- if ($parent) $parent.find('[data-toggle=collapse][data-parent="' + parent + '"]').not($this).addClass('collapsed')
- $this[$target.hasClass('in') ? 'addClass' : 'removeClass']('collapsed')
- }
-
- $target.collapse(option)
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: dropdown.js v3.1.1
- * http://getbootstrap.com/javascript/#dropdowns
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // DROPDOWN CLASS DEFINITION
- // =========================
-
- var backdrop = '.dropdown-backdrop'
- var toggle = '[data-toggle=dropdown]'
- var Dropdown = function (element) {
- $(element).on('click.bs.dropdown', this.toggle)
- }
-
- Dropdown.prototype.toggle = function (e) {
- var $this = $(this)
-
- if ($this.is('.disabled, :disabled')) return
-
- var $parent = getParent($this)
- var isActive = $parent.hasClass('open')
-
- clearMenus()
-
- if (!isActive) {
- if ('ontouchstart' in document.documentElement && !$parent.closest('.navbar-nav').length) {
- // if mobile we use a backdrop because click events don't delegate
- $('<div class="dropdown-backdrop"/>').insertAfter($(this)).on('click', clearMenus)
- }
-
- var relatedTarget = { relatedTarget: this }
- $parent.trigger(e = $.Event('show.bs.dropdown', relatedTarget))
-
- if (e.isDefaultPrevented()) return
-
- $parent
- .toggleClass('open')
- .trigger('shown.bs.dropdown', relatedTarget)
-
- $this.focus()
- }
-
- return false
- }
-
- Dropdown.prototype.keydown = function (e) {
- if (!/(38|40|27)/.test(e.keyCode)) return
-
- var $this = $(this)
-
- e.preventDefault()
- e.stopPropagation()
-
- if ($this.is('.disabled, :disabled')) return
-
- var $parent = getParent($this)
- var isActive = $parent.hasClass('open')
-
- if (!isActive || (isActive && e.keyCode == 27)) {
- if (e.which == 27) $parent.find(toggle).focus()
- return $this.click()
- }
-
- var desc = ' li:not(.divider):visible a'
- var $items = $parent.find('[role=menu]' + desc + ', [role=listbox]' + desc)
-
- if (!$items.length) return
-
- var index = $items.index($items.filter(':focus'))
-
- if (e.keyCode == 38 && index > 0) index-- // up
- if (e.keyCode == 40 && index < $items.length - 1) index++ // down
- if (!~index) index = 0
-
- $items.eq(index).focus()
- }
-
- function clearMenus(e) {
- $(backdrop).remove()
- $(toggle).each(function () {
- var $parent = getParent($(this))
- var relatedTarget = { relatedTarget: this }
- if (!$parent.hasClass('open')) return
- $parent.trigger(e = $.Event('hide.bs.dropdown', relatedTarget))
- if (e.isDefaultPrevented()) return
- $parent.removeClass('open').trigger('hidden.bs.dropdown', relatedTarget)
- })
- }
-
- function getParent($this) {
- var selector = $this.attr('data-target')
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && /#[A-Za-z]/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
- }
-
- var $parent = selector && $(selector)
-
- return $parent && $parent.length ? $parent : $this.parent()
- }
-
-
- // DROPDOWN PLUGIN DEFINITION
- // ==========================
-
- var old = $.fn.dropdown
-
- $.fn.dropdown = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.dropdown')
-
- if (!data) $this.data('bs.dropdown', (data = new Dropdown(this)))
- if (typeof option == 'string') data[option].call($this)
- })
- }
-
- $.fn.dropdown.Constructor = Dropdown
-
-
- // DROPDOWN NO CONFLICT
- // ====================
-
- $.fn.dropdown.noConflict = function () {
- $.fn.dropdown = old
- return this
- }
-
-
- // APPLY TO STANDARD DROPDOWN ELEMENTS
- // ===================================
-
- $(document)
- .on('click.bs.dropdown.data-api', clearMenus)
- .on('click.bs.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() })
- .on('click.bs.dropdown.data-api', toggle, Dropdown.prototype.toggle)
- .on('keydown.bs.dropdown.data-api', toggle + ', [role=menu], [role=listbox]', Dropdown.prototype.keydown)
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: modal.js v3.1.1
- * http://getbootstrap.com/javascript/#modals
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // MODAL CLASS DEFINITION
- // ======================
-
- var Modal = function (element, options) {
- this.options = options
- this.$element = $(element)
- this.$backdrop =
- this.isShown = null
-
- if (this.options.remote) {
- this.$element
- .find('.modal-content')
- .load(this.options.remote, $.proxy(function () {
- this.$element.trigger('loaded.bs.modal')
- }, this))
- }
- }
-
- Modal.DEFAULTS = {
- backdrop: true,
- keyboard: true,
- show: true
- }
-
- Modal.prototype.toggle = function (_relatedTarget) {
- return this[!this.isShown ? 'show' : 'hide'](_relatedTarget)
- }
-
- Modal.prototype.show = function (_relatedTarget) {
- var that = this
- var e = $.Event('show.bs.modal', { relatedTarget: _relatedTarget })
-
- this.$element.trigger(e)
-
- if (this.isShown || e.isDefaultPrevented()) return
-
- this.isShown = true
-
- this.escape()
-
- this.$element.on('click.dismiss.bs.modal', '[data-dismiss="modal"]', $.proxy(this.hide, this))
-
- this.backdrop(function () {
- var transition = $.support.transition && that.$element.hasClass('fade')
-
- if (!that.$element.parent().length) {
- that.$element.appendTo(document.body) // don't move modals dom position
- }
-
- that.$element
- .show()
- .scrollTop(0)
-
- if (transition) {
- that.$element[0].offsetWidth // force reflow
- }
-
- that.$element
- .addClass('in')
- .attr('aria-hidden', false)
-
- that.enforceFocus()
-
- var e = $.Event('shown.bs.modal', { relatedTarget: _relatedTarget })
-
- transition ?
- that.$element.find('.modal-dialog') // wait for modal to slide in
- .one($.support.transition.end, function () {
- that.$element.focus().trigger(e)
- })
- .emulateTransitionEnd(300) :
- that.$element.focus().trigger(e)
- })
- }
-
- Modal.prototype.hide = function (e) {
- if (e) e.preventDefault()
-
- e = $.Event('hide.bs.modal')
-
- this.$element.trigger(e)
-
- if (!this.isShown || e.isDefaultPrevented()) return
-
- this.isShown = false
-
- this.escape()
-
- $(document).off('focusin.bs.modal')
-
- this.$element
- .removeClass('in')
- .attr('aria-hidden', true)
- .off('click.dismiss.bs.modal')
-
- $.support.transition && this.$element.hasClass('fade') ?
- this.$element
- .one($.support.transition.end, $.proxy(this.hideModal, this))
- .emulateTransitionEnd(300) :
- this.hideModal()
- }
-
- Modal.prototype.enforceFocus = function () {
- $(document)
- .off('focusin.bs.modal') // guard against infinite focus loop
- .on('focusin.bs.modal', $.proxy(function (e) {
- if (this.$element[0] !== e.target && !this.$element.has(e.target).length) {
- this.$element.focus()
- }
- }, this))
- }
-
- Modal.prototype.escape = function () {
- if (this.isShown && this.options.keyboard) {
- this.$element.on('keyup.dismiss.bs.modal', $.proxy(function (e) {
- e.which == 27 && this.hide()
- }, this))
- } else if (!this.isShown) {
- this.$element.off('keyup.dismiss.bs.modal')
- }
- }
-
- Modal.prototype.hideModal = function () {
- var that = this
- this.$element.hide()
- this.backdrop(function () {
- that.removeBackdrop()
- that.$element.trigger('hidden.bs.modal')
- })
- }
-
- Modal.prototype.removeBackdrop = function () {
- this.$backdrop && this.$backdrop.remove()
- this.$backdrop = null
- }
-
- Modal.prototype.backdrop = function (callback) {
- var animate = this.$element.hasClass('fade') ? 'fade' : ''
-
- if (this.isShown && this.options.backdrop) {
- var doAnimate = $.support.transition && animate
-
- this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
- .appendTo(document.body)
-
- this.$element.on('click.dismiss.bs.modal', $.proxy(function (e) {
- if (e.target !== e.currentTarget) return
- this.options.backdrop == 'static'
- ? this.$element[0].focus.call(this.$element[0])
- : this.hide.call(this)
- }, this))
-
- if (doAnimate) this.$backdrop[0].offsetWidth // force reflow
-
- this.$backdrop.addClass('in')
-
- if (!callback) return
-
- doAnimate ?
- this.$backdrop
- .one($.support.transition.end, callback)
- .emulateTransitionEnd(150) :
- callback()
-
- } else if (!this.isShown && this.$backdrop) {
- this.$backdrop.removeClass('in')
-
- $.support.transition && this.$element.hasClass('fade') ?
- this.$backdrop
- .one($.support.transition.end, callback)
- .emulateTransitionEnd(150) :
- callback()
-
- } else if (callback) {
- callback()
- }
- }
-
-
- // MODAL PLUGIN DEFINITION
- // =======================
-
- var old = $.fn.modal
-
- $.fn.modal = function (option, _relatedTarget) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.modal')
- var options = $.extend({}, Modal.DEFAULTS, $this.data(), typeof option == 'object' && option)
-
- if (!data) $this.data('bs.modal', (data = new Modal(this, options)))
- if (typeof option == 'string') data[option](_relatedTarget)
- else if (options.show) data.show(_relatedTarget)
- })
- }
-
- $.fn.modal.Constructor = Modal
-
-
- // MODAL NO CONFLICT
- // =================
-
- $.fn.modal.noConflict = function () {
- $.fn.modal = old
- return this
- }
-
-
- // MODAL DATA-API
- // ==============
-
- $(document).on('click.bs.modal.data-api', '[data-toggle="modal"]', function (e) {
- var $this = $(this)
- var href = $this.attr('href')
- var $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7
- var option = $target.data('bs.modal') ? 'toggle' : $.extend({ remote: !/#/.test(href) && href }, $target.data(), $this.data())
-
- if ($this.is('a')) e.preventDefault()
-
- $target
- .modal(option, this)
- .one('hide', function () {
- $this.is(':visible') && $this.focus()
- })
- })
-
- $(document)
- .on('show.bs.modal', '.modal', function () { $(document.body).addClass('modal-open') })
- .on('hidden.bs.modal', '.modal', function () { $(document.body).removeClass('modal-open') })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: tooltip.js v3.1.1
- * http://getbootstrap.com/javascript/#tooltip
- * Inspired by the original jQuery.tipsy by Jason Frame
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // TOOLTIP PUBLIC CLASS DEFINITION
- // ===============================
-
- var Tooltip = function (element, options) {
- this.type =
- this.options =
- this.enabled =
- this.timeout =
- this.hoverState =
- this.$element = null
-
- this.init('tooltip', element, options)
- }
-
- Tooltip.DEFAULTS = {
- animation: true,
- placement: 'top',
- selector: false,
- template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>',
- trigger: 'hover focus',
- title: '',
- delay: 0,
- html: false,
- container: false
- }
-
- Tooltip.prototype.init = function (type, element, options) {
- this.enabled = true
- this.type = type
- this.$element = $(element)
- this.options = this.getOptions(options)
-
- var triggers = this.options.trigger.split(' ')
-
- for (var i = triggers.length; i--;) {
- var trigger = triggers[i]
-
- if (trigger == 'click') {
- this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this))
- } else if (trigger != 'manual') {
- var eventIn = trigger == 'hover' ? 'mouseenter' : 'focusin'
- var eventOut = trigger == 'hover' ? 'mouseleave' : 'focusout'
-
- this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this))
- this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this))
- }
- }
-
- this.options.selector ?
- (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) :
- this.fixTitle()
- }
-
- Tooltip.prototype.getDefaults = function () {
- return Tooltip.DEFAULTS
- }
-
- Tooltip.prototype.getOptions = function (options) {
- options = $.extend({}, this.getDefaults(), this.$element.data(), options)
-
- if (options.delay && typeof options.delay == 'number') {
- options.delay = {
- show: options.delay,
- hide: options.delay
- }
- }
-
- return options
- }
-
- Tooltip.prototype.getDelegateOptions = function () {
- var options = {}
- var defaults = this.getDefaults()
-
- this._options && $.each(this._options, function (key, value) {
- if (defaults[key] != value) options[key] = value
- })
-
- return options
- }
-
- Tooltip.prototype.enter = function (obj) {
- var self = obj instanceof this.constructor ?
- obj : $(obj.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type)
-
- clearTimeout(self.timeout)
-
- self.hoverState = 'in'
-
- if (!self.options.delay || !self.options.delay.show) return self.show()
-
- self.timeout = setTimeout(function () {
- if (self.hoverState == 'in') self.show()
- }, self.options.delay.show)
- }
-
- Tooltip.prototype.leave = function (obj) {
- var self = obj instanceof this.constructor ?
- obj : $(obj.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type)
-
- clearTimeout(self.timeout)
-
- self.hoverState = 'out'
-
- if (!self.options.delay || !self.options.delay.hide) return self.hide()
-
- self.timeout = setTimeout(function () {
- if (self.hoverState == 'out') self.hide()
- }, self.options.delay.hide)
- }
-
- Tooltip.prototype.show = function () {
- var e = $.Event('show.bs.' + this.type)
-
- if (this.hasContent() && this.enabled) {
- this.$element.trigger(e)
-
- if (e.isDefaultPrevented()) return
- var that = this;
-
- var $tip = this.tip()
-
- this.setContent()
-
- if (this.options.animation) $tip.addClass('fade')
-
- var placement = typeof this.options.placement == 'function' ?
- this.options.placement.call(this, $tip[0], this.$element[0]) :
- this.options.placement
-
- var autoToken = /\s?auto?\s?/i
- var autoPlace = autoToken.test(placement)
- if (autoPlace) placement = placement.replace(autoToken, '') || 'top'
-
- $tip
- .detach()
- .css({ top: 0, left: 0, display: 'block' })
- .addClass(placement)
-
- this.options.container ? $tip.appendTo(this.options.container) : $tip.insertAfter(this.$element)
-
- var pos = this.getPosition()
- var actualWidth = $tip[0].offsetWidth
- var actualHeight = $tip[0].offsetHeight
-
- if (autoPlace) {
- var $parent = this.$element.parent()
-
- var orgPlacement = placement
- var docScroll = document.documentElement.scrollTop || document.body.scrollTop
- var parentWidth = this.options.container == 'body' ? window.innerWidth : $parent.outerWidth()
- var parentHeight = this.options.container == 'body' ? window.innerHeight : $parent.outerHeight()
- var parentLeft = this.options.container == 'body' ? 0 : $parent.offset().left
-
- placement = placement == 'bottom' && pos.top + pos.height + actualHeight - docScroll > parentHeight ? 'top' :
- placement == 'top' && pos.top - docScroll - actualHeight < 0 ? 'bottom' :
- placement == 'right' && pos.right + actualWidth > parentWidth ? 'left' :
- placement == 'left' && pos.left - actualWidth < parentLeft ? 'right' :
- placement
-
- $tip
- .removeClass(orgPlacement)
- .addClass(placement)
- }
-
- var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight)
-
- this.applyPlacement(calculatedOffset, placement)
- this.hoverState = null
-
- var complete = function() {
- that.$element.trigger('shown.bs.' + that.type)
- }
-
- $.support.transition && this.$tip.hasClass('fade') ?
- $tip
- .one($.support.transition.end, complete)
- .emulateTransitionEnd(150) :
- complete()
- }
- }
-
- Tooltip.prototype.applyPlacement = function (offset, placement) {
- var replace
- var $tip = this.tip()
- var width = $tip[0].offsetWidth
- var height = $tip[0].offsetHeight
-
- // manually read margins because getBoundingClientRect includes difference
- var marginTop = parseInt($tip.css('margin-top'), 10)
- var marginLeft = parseInt($tip.css('margin-left'), 10)
-
- // we must check for NaN for ie 8/9
- if (isNaN(marginTop)) marginTop = 0
- if (isNaN(marginLeft)) marginLeft = 0
-
- offset.top = offset.top + marginTop
- offset.left = offset.left + marginLeft
-
- // $.fn.offset doesn't round pixel values
- // so we use setOffset directly with our own function B-0
- $.offset.setOffset($tip[0], $.extend({
- using: function (props) {
- $tip.css({
- top: Math.round(props.top),
- left: Math.round(props.left)
- })
- }
- }, offset), 0)
-
- $tip.addClass('in')
-
- // check to see if placing tip in new offset caused the tip to resize itself
- var actualWidth = $tip[0].offsetWidth
- var actualHeight = $tip[0].offsetHeight
-
- if (placement == 'top' && actualHeight != height) {
- replace = true
- offset.top = offset.top + height - actualHeight
- }
-
- if (/bottom|top/.test(placement)) {
- var delta = 0
-
- if (offset.left < 0) {
- delta = offset.left * -2
- offset.left = 0
-
- $tip.offset(offset)
-
- actualWidth = $tip[0].offsetWidth
- actualHeight = $tip[0].offsetHeight
- }
-
- this.replaceArrow(delta - width + actualWidth, actualWidth, 'left')
- } else {
- this.replaceArrow(actualHeight - height, actualHeight, 'top')
- }
-
- if (replace) $tip.offset(offset)
- }
-
- Tooltip.prototype.replaceArrow = function (delta, dimension, position) {
- this.arrow().css(position, delta ? (50 * (1 - delta / dimension) + '%') : '')
- }
-
- Tooltip.prototype.setContent = function () {
- var $tip = this.tip()
- var title = this.getTitle()
-
- $tip.find('.tooltip-inner')[this.options.html ? 'html' : 'text'](title)
- $tip.removeClass('fade in top bottom left right')
- }
-
- Tooltip.prototype.hide = function () {
- var that = this
- var $tip = this.tip()
- var e = $.Event('hide.bs.' + this.type)
-
- function complete() {
- if (that.hoverState != 'in') $tip.detach()
- that.$element.trigger('hidden.bs.' + that.type)
- }
-
- this.$element.trigger(e)
-
- if (e.isDefaultPrevented()) return
-
- $tip.removeClass('in')
-
- $.support.transition && this.$tip.hasClass('fade') ?
- $tip
- .one($.support.transition.end, complete)
- .emulateTransitionEnd(150) :
- complete()
-
- this.hoverState = null
-
- return this
- }
-
- Tooltip.prototype.fixTitle = function () {
- var $e = this.$element
- if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') {
- $e.attr('data-original-title', $e.attr('title') || '').attr('title', '')
- }
- }
-
- Tooltip.prototype.hasContent = function () {
- return this.getTitle()
- }
-
- Tooltip.prototype.getPosition = function () {
- var el = this.$element[0]
- return $.extend({}, (typeof el.getBoundingClientRect == 'function') ? el.getBoundingClientRect() : {
- width: el.offsetWidth,
- height: el.offsetHeight
- }, this.$element.offset())
- }
-
- Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) {
- return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } :
- placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } :
- placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } :
- /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width }
- }
-
- Tooltip.prototype.getTitle = function () {
- var title
- var $e = this.$element
- var o = this.options
-
- title = $e.attr('data-original-title')
- || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title)
-
- return title
- }
-
- Tooltip.prototype.tip = function () {
- return this.$tip = this.$tip || $(this.options.template)
- }
-
- Tooltip.prototype.arrow = function () {
- return this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow')
- }
-
- Tooltip.prototype.validate = function () {
- if (!this.$element[0].parentNode) {
- this.hide()
- this.$element = null
- this.options = null
- }
- }
-
- Tooltip.prototype.enable = function () {
- this.enabled = true
- }
-
- Tooltip.prototype.disable = function () {
- this.enabled = false
- }
-
- Tooltip.prototype.toggleEnabled = function () {
- this.enabled = !this.enabled
- }
-
- Tooltip.prototype.toggle = function (e) {
- var self = e ? $(e.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type) : this
- self.tip().hasClass('in') ? self.leave(self) : self.enter(self)
- }
-
- Tooltip.prototype.destroy = function () {
- clearTimeout(this.timeout)
- this.hide().$element.off('.' + this.type).removeData('bs.' + this.type)
- }
-
-
- // TOOLTIP PLUGIN DEFINITION
- // =========================
-
- var old = $.fn.tooltip
-
- $.fn.tooltip = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.tooltip')
- var options = typeof option == 'object' && option
-
- if (!data && option == 'destroy') return
- if (!data) $this.data('bs.tooltip', (data = new Tooltip(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.tooltip.Constructor = Tooltip
-
-
- // TOOLTIP NO CONFLICT
- // ===================
-
- $.fn.tooltip.noConflict = function () {
- $.fn.tooltip = old
- return this
- }
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: popover.js v3.1.1
- * http://getbootstrap.com/javascript/#popovers
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // POPOVER PUBLIC CLASS DEFINITION
- // ===============================
-
- var Popover = function (element, options) {
- this.init('popover', element, options)
- }
-
- if (!$.fn.tooltip) throw new Error('Popover requires tooltip.js')
-
- Popover.DEFAULTS = $.extend({}, $.fn.tooltip.Constructor.DEFAULTS, {
- placement: 'right',
- trigger: 'click',
- content: '',
- template: '<div class="popover"><div class="arrow"></div><h3 class="popover-title"></h3><div class="popover-content"></div></div>'
- })
-
-
- // NOTE: POPOVER EXTENDS tooltip.js
- // ================================
-
- Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype)
-
- Popover.prototype.constructor = Popover
-
- Popover.prototype.getDefaults = function () {
- return Popover.DEFAULTS
- }
-
- Popover.prototype.setContent = function () {
- var $tip = this.tip()
- var title = this.getTitle()
- var content = this.getContent()
-
- $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title)
- $tip.find('.popover-content')[ // we use append for html objects to maintain js events
- this.options.html ? (typeof content == 'string' ? 'html' : 'append') : 'text'
- ](content)
-
- $tip.removeClass('fade top bottom left right in')
-
- // IE8 doesn't accept hiding via the `:empty` pseudo selector, we have to do
- // this manually by checking the contents.
- if (!$tip.find('.popover-title').html()) $tip.find('.popover-title').hide()
- }
-
- Popover.prototype.hasContent = function () {
- return this.getTitle() || this.getContent()
- }
-
- Popover.prototype.getContent = function () {
- var $e = this.$element
- var o = this.options
-
- return $e.attr('data-content')
- || (typeof o.content == 'function' ?
- o.content.call($e[0]) :
- o.content)
- }
-
- Popover.prototype.arrow = function () {
- return this.$arrow = this.$arrow || this.tip().find('.arrow')
- }
-
- Popover.prototype.tip = function () {
- if (!this.$tip) this.$tip = $(this.options.template)
- return this.$tip
- }
-
-
- // POPOVER PLUGIN DEFINITION
- // =========================
-
- var old = $.fn.popover
-
- $.fn.popover = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.popover')
- var options = typeof option == 'object' && option
-
- if (!data && option == 'destroy') return
- if (!data) $this.data('bs.popover', (data = new Popover(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.popover.Constructor = Popover
-
-
- // POPOVER NO CONFLICT
- // ===================
-
- $.fn.popover.noConflict = function () {
- $.fn.popover = old
- return this
- }
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: scrollspy.js v3.1.1
- * http://getbootstrap.com/javascript/#scrollspy
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // SCROLLSPY CLASS DEFINITION
- // ==========================
-
- function ScrollSpy(element, options) {
- var href
- var process = $.proxy(this.process, this)
-
- this.$element = $(element).is('body') ? $(window) : $(element)
- this.$body = $('body')
- this.$scrollElement = this.$element.on('scroll.bs.scroll-spy.data-api', process)
- this.options = $.extend({}, ScrollSpy.DEFAULTS, options)
- this.selector = (this.options.target
- || ((href = $(element).attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
- || '') + ' .nav li > a'
- this.offsets = $([])
- this.targets = $([])
- this.activeTarget = null
-
- this.refresh()
- this.process()
- }
-
- ScrollSpy.DEFAULTS = {
- offset: 10
- }
-
- ScrollSpy.prototype.refresh = function () {
- var offsetMethod = this.$element[0] == window ? 'offset' : 'position'
-
- this.offsets = $([])
- this.targets = $([])
-
- var self = this
- var $targets = this.$body
- .find(this.selector)
- .map(function () {
- var $el = $(this)
- var href = $el.data('target') || $el.attr('href')
- var $href = /^#./.test(href) && $(href)
-
- return ($href
- && $href.length
- && $href.is(':visible')
- && [[ $href[offsetMethod]().top + (!$.isWindow(self.$scrollElement.get(0)) && self.$scrollElement.scrollTop()), href ]]) || null
- })
- .sort(function (a, b) { return a[0] - b[0] })
- .each(function () {
- self.offsets.push(this[0])
- self.targets.push(this[1])
- })
- }
-
- ScrollSpy.prototype.process = function () {
- var scrollTop = this.$scrollElement.scrollTop() + this.options.offset
- var scrollHeight = this.$scrollElement[0].scrollHeight || this.$body[0].scrollHeight
- var maxScroll = scrollHeight - this.$scrollElement.height()
- var offsets = this.offsets
- var targets = this.targets
- var activeTarget = this.activeTarget
- var i
-
- if (scrollTop >= maxScroll) {
- return activeTarget != (i = targets.last()[0]) && this.activate(i)
- }
-
- if (activeTarget && scrollTop <= offsets[0]) {
- return activeTarget != (i = targets[0]) && this.activate(i)
- }
-
- for (i = offsets.length; i--;) {
- activeTarget != targets[i]
- && scrollTop >= offsets[i]
- && (!offsets[i + 1] || scrollTop <= offsets[i + 1])
- && this.activate( targets[i] )
- }
- }
-
- ScrollSpy.prototype.activate = function (target) {
- this.activeTarget = target
-
- $(this.selector)
- .parentsUntil(this.options.target, '.active')
- .removeClass('active')
-
- var selector = this.selector +
- '[data-target="' + target + '"],' +
- this.selector + '[href="' + target + '"]'
-
- var active = $(selector)
- .parents('li')
- .addClass('active')
-
- if (active.parent('.dropdown-menu').length) {
- active = active
- .closest('li.dropdown')
- .addClass('active')
- }
-
- active.trigger('activate.bs.scrollspy')
- }
-
-
- // SCROLLSPY PLUGIN DEFINITION
- // ===========================
-
- var old = $.fn.scrollspy
-
- $.fn.scrollspy = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.scrollspy')
- var options = typeof option == 'object' && option
-
- if (!data) $this.data('bs.scrollspy', (data = new ScrollSpy(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.scrollspy.Constructor = ScrollSpy
-
-
- // SCROLLSPY NO CONFLICT
- // =====================
-
- $.fn.scrollspy.noConflict = function () {
- $.fn.scrollspy = old
- return this
- }
-
-
- // SCROLLSPY DATA-API
- // ==================
-
- $(window).on('load', function () {
- $('[data-spy="scroll"]').each(function () {
- var $spy = $(this)
- $spy.scrollspy($spy.data())
- })
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: tab.js v3.1.1
- * http://getbootstrap.com/javascript/#tabs
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // TAB CLASS DEFINITION
- // ====================
-
- var Tab = function (element) {
- this.element = $(element)
- }
-
- Tab.prototype.show = function () {
- var $this = this.element
- var $ul = $this.closest('ul:not(.dropdown-menu)')
- var selector = $this.data('target')
-
- if (!selector) {
- selector = $this.attr('href')
- selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
- }
-
- if ($this.parent('li').hasClass('active')) return
-
- var previous = $ul.find('.active:last a')[0]
- var e = $.Event('show.bs.tab', {
- relatedTarget: previous
- })
-
- $this.trigger(e)
-
- if (e.isDefaultPrevented()) return
-
- var $target = $(selector)
-
- this.activate($this.parent('li'), $ul)
- this.activate($target, $target.parent(), function () {
- $this.trigger({
- type: 'shown.bs.tab',
- relatedTarget: previous
- })
- })
- }
-
- Tab.prototype.activate = function (element, container, callback) {
- var $active = container.find('> .active')
- var transition = callback
- && $.support.transition
- && $active.hasClass('fade')
-
- function next() {
- $active
- .removeClass('active')
- .find('> .dropdown-menu > .active')
- .removeClass('active')
-
- element.addClass('active')
-
- if (transition) {
- element[0].offsetWidth // reflow for transition
- element.addClass('in')
- } else {
- element.removeClass('fade')
- }
-
- if (element.parent('.dropdown-menu')) {
- element.closest('li.dropdown').addClass('active')
- }
-
- callback && callback()
- }
-
- transition ?
- $active
- .one($.support.transition.end, next)
- .emulateTransitionEnd(150) :
- next()
-
- $active.removeClass('in')
- }
-
-
- // TAB PLUGIN DEFINITION
- // =====================
-
- var old = $.fn.tab
-
- $.fn.tab = function ( option ) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.tab')
-
- if (!data) $this.data('bs.tab', (data = new Tab(this)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.tab.Constructor = Tab
-
-
- // TAB NO CONFLICT
- // ===============
-
- $.fn.tab.noConflict = function () {
- $.fn.tab = old
- return this
- }
-
-
- // TAB DATA-API
- // ============
-
- $(document).on('click.bs.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) {
- e.preventDefault()
- $(this).tab('show')
- })
-
-}(jQuery);
-
-/* ========================================================================
- * Bootstrap: affix.js v3.1.1
- * http://getbootstrap.com/javascript/#affix
- * ========================================================================
- * Copyright 2011-2014 Twitter, Inc.
- * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
- * ======================================================================== */
-
-
-+function ($) {
- 'use strict';
-
- // AFFIX CLASS DEFINITION
- // ======================
-
- var Affix = function (element, options) {
- this.options = $.extend({}, Affix.DEFAULTS, options)
- this.$window = $(window)
- .on('scroll.bs.affix.data-api', $.proxy(this.checkPosition, this))
- .on('click.bs.affix.data-api', $.proxy(this.checkPositionWithEventLoop, this))
-
- this.$element = $(element)
- this.affixed =
- this.unpin =
- this.pinnedOffset = null
-
- this.checkPosition()
- }
-
- Affix.RESET = 'affix affix-top affix-bottom'
-
- Affix.DEFAULTS = {
- offset: 0
- }
-
- Affix.prototype.getPinnedOffset = function () {
- if (this.pinnedOffset) return this.pinnedOffset
- this.$element.removeClass(Affix.RESET).addClass('affix')
- var scrollTop = this.$window.scrollTop()
- var position = this.$element.offset()
- return (this.pinnedOffset = position.top - scrollTop)
- }
-
- Affix.prototype.checkPositionWithEventLoop = function () {
- setTimeout($.proxy(this.checkPosition, this), 1)
- }
-
- Affix.prototype.checkPosition = function () {
- if (!this.$element.is(':visible')) return
-
- var scrollHeight = $(document).height()
- var scrollTop = this.$window.scrollTop()
- var position = this.$element.offset()
- var offset = this.options.offset
- var offsetTop = offset.top
- var offsetBottom = offset.bottom
-
- if (this.affixed == 'top') position.top += scrollTop
-
- if (typeof offset != 'object') offsetBottom = offsetTop = offset
- if (typeof offsetTop == 'function') offsetTop = offset.top(this.$element)
- if (typeof offsetBottom == 'function') offsetBottom = offset.bottom(this.$element)
-
- var affix = this.unpin != null && (scrollTop + this.unpin <= position.top) ? false :
- offsetBottom != null && (position.top + this.$element.height() >= scrollHeight - offsetBottom) ? 'bottom' :
- offsetTop != null && (scrollTop <= offsetTop) ? 'top' : false
-
- if (this.affixed === affix) return
- if (this.unpin) this.$element.css('top', '')
-
- var affixType = 'affix' + (affix ? '-' + affix : '')
- var e = $.Event(affixType + '.bs.affix')
-
- this.$element.trigger(e)
-
- if (e.isDefaultPrevented()) return
-
- this.affixed = affix
- this.unpin = affix == 'bottom' ? this.getPinnedOffset() : null
-
- this.$element
- .removeClass(Affix.RESET)
- .addClass(affixType)
- .trigger($.Event(affixType.replace('affix', 'affixed')))
-
- if (affix == 'bottom') {
- this.$element.offset({ top: scrollHeight - offsetBottom - this.$element.height() })
- }
- }
-
-
- // AFFIX PLUGIN DEFINITION
- // =======================
-
- var old = $.fn.affix
-
- $.fn.affix = function (option) {
- return this.each(function () {
- var $this = $(this)
- var data = $this.data('bs.affix')
- var options = typeof option == 'object' && option
-
- if (!data) $this.data('bs.affix', (data = new Affix(this, options)))
- if (typeof option == 'string') data[option]()
- })
- }
-
- $.fn.affix.Constructor = Affix
-
-
- // AFFIX NO CONFLICT
- // =================
-
- $.fn.affix.noConflict = function () {
- $.fn.affix = old
- return this
- }
-
-
- // AFFIX DATA-API
- // ==============
-
- $(window).on('load', function () {
- $('[data-spy="affix"]').each(function () {
- var $spy = $(this)
- var data = $spy.data()
-
- data.offset = data.offset || {}
-
- if (data.offsetBottom) data.offset.bottom = data.offsetBottom
- if (data.offsetTop) data.offset.top = data.offsetTop
-
- $spy.affix(data)
- })
- })
-
-}(jQuery);
diff --git a/debian/changelog b/debian/changelog
deleted file mode 100644
index 270620c..0000000
--- a/debian/changelog
+++ /dev/null
@@ -1,65 +0,0 @@
-python-mne (0.10.0+dfsg-1.1) UNRELEASED; urgency=medium
-
- * New upstream version
- * Removed depedency on mayavi2
-
- -- Jaakko Leppakangas <jaeilepp at student.jyu.fi> Mon, 09 Nov 2015 05:59:55 -0500
-
-python-mne (0.8.6+dfsg-1) unstable; urgency=low
-
- * New upstream version
- * remove dependency on d3
-
- -- Alexandre Gramfort <alexandre.gramfort at m4x.org> Sat, 25 Oct 2014 16:09:07 -0400
-
-python-mne (0.8.4+dfsg-1) unstable; urgency=low
-
- [ Alexandre Gramfort ]
- * New upstream version.
- * Skip tests needing network access (Closes: #759916)
- * Regenerate compressed bootstrap 3.0, added build-depends on
- yui-compressor
-
- [ Andreas Tille ]
- * Strip compressed JS files from upstream source
-
- [ Yaroslav Halchenko ]
- * debian/copyright
- - updated to note MIT license for bootstrap 3.0
- * debian/control
- - removed pysupport from build-depends (not used)
- - added mayavi2 and jquery packages into build-depends for robust
- build across all Debian/Ubuntu releases and extended testing
-
- -- Yaroslav Halchenko <debian at onerussian.com> Wed, 24 Sep 2014 08:20:50 -0400
-
-python-mne (0.7.3-1) unstable; urgency=low
-
- * New upstream version
- Closes: #735811
- * Set back X-Python-Version to >= 2.6
-
- -- Alexandre Gramfort <alexandre.gramfort at m4x.org> Sat, 18 Jan 2014 17:00:00 -0400
-
-python-mne (0.7.1-2) neurodebian; urgency=low
-
- * Boost X-Python-Version to >= 2.7 to provide installable
- builds for wheezy
-
- -- Yaroslav Halchenko <debian at onerussian.com> Sun, 12 Jan 2014 10:02:56 -0500
-
-python-mne (0.7.1-1) unstable; urgency=low
-
- [ Alexandre Gramfort ]
- * Fresh upstream release
-
- [ Andreas Tille ]
- * cme fix dpkg-control
-
- -- Alexandre Gramfort <alexandre.gramfort at m4x.org> Wed, 8 Jan 2014 17:00:00 -0400
-
-python-mne (0.7-1) unstable; urgency=low
-
- * Initial packaging (Closes: #728797)
-
- -- Alexandre Gramfort <alexandre.gramfort at m4x.org> Sun, 27 Oct 2013 21:30:31 -0400
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index ec63514..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-9
diff --git a/debian/control b/debian/control
deleted file mode 100644
index d86baba..0000000
--- a/debian/control
+++ /dev/null
@@ -1,55 +0,0 @@
-Source: python-mne
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Alexandre Gramfort <alexandre.gramfort at m4x.org>,
- Yaroslav Halchenko <debian at onerussian.com>,
- Michael Hanke <michael.hanke at gmail.com>,
- Andreas Tille <tille at debian.org>
-Section: python
-Priority: optional
-Build-Depends: debhelper (>= 9),
- python-all,
- python-numpy,
- python-scipy,
- python-sphinx (>= 1.0~),
- python-nose,
- python-setuptools,
- python-matplotlib,
- python-joblib (>= 0.4.5),
- python-sklearn,
- xvfb,
- xauth,
- libgl1-mesa-dri,
- python-coverage,
- libjs-jquery,
- libjs-jquery-ui,
- yui-compressor,
-Standards-Version: 3.9.5
-Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/python-mne.git
-Vcs-Git: git://anonscm.debian.org/debian-med/python-mne.git
-Homepage: http://martinos.org/mne
-X-Python-Version: >= 2.6
-
-Package: python-mne
-Architecture: all
-Depends: ${misc:Depends},
- ${python:Depends},
- python-numpy,
- python-scipy,
- python-sklearn,
- python-matplotlib,
- python-joblib (>= 0.4.5),
- xvfb,
- xauth,
- libgl1-mesa-dri,
- help2man,
- libjs-jquery,
- libjs-jquery-ui,
-Recommends: python-nose,
- mayavi2
-Suggests: python-dap,
- ipython
-Provides: ${python:Provides}
-Description: Python modules for MEG and EEG data analysis
- This package is designed for sensor- and source-space analysis of MEG
- and EEG data, including frequency-domain and time-frequency analyses
- and non-parametric statistics.
diff --git a/debian/copyright b/debian/copyright
deleted file mode 100644
index c608176..0000000
--- a/debian/copyright
+++ /dev/null
@@ -1,150 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: MNE-Python
-Upstream-Contact: Alexandre Gramfort <alexandre.gramfort at m4x.org>
-Source: http://github.com/mne-tools/mne-python
-Files-Excluded: mne/html/*.min.js
-Comment: File AppEULA.rst refers to code that is documented in this package but not shipped with it.
-
-Files: *
-Copyright: 2010-2014, MNE-Python Developers
-License: BSD-3
-
-Files: doc/sphinxext/*
-Copyright: 2008, Stefan van der Walt <stefan at mentat.za.net>, Pauli Virtanen <pav at iki.fi>
-License: BSD-2
- 1. Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
- 2. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in
- the documentation and/or other materials provided with the
- distribution.
-
-Files: debian/*
-Copyright: 2010-2013, Yaroslav Halchenko <debian at onerussian.com>, Alexandre Gramfort <alexandre.gramfort at m4x.org>
-License: BSD-3
-
-Files: mne/externals/decorator.py
-Copyright: 2005-2012, Michele Simionato
-License: BSD
-
-Files: mne/externals/Fieldtrip.py
-Copyright: 2008, Robert Oostenveld, S. Klanke
- F.C. Donders Centre for Cognitive Neuroimaging,
- Radboud University Nijmegen, The Netherlands.
- http://www.ru.nl/fcdonders/fieldtrip
-License: BSD-3
-
-Files: mne/externals/jdcal.py
-Copyright: 2010, Prasanth Nair, <prasanthhn at gmail.com>
-License: BSD
-
-Files: mne/externals/six.py
-Copyright: 2010-2013 Benjamin Peterson
-License: MIT
-
-Files: mne/externals/tempita/*
-Copyright: 2008 Ian Bicking and Contributors
-License: MIT
-
-Files: debian/JS/bootstrap
-Copyright: 2011-2014 Twitter, Inc.
-License: MIT
-
-Files: mne/html/bootstrap*
-Copyright: 2013 Twitter, Inc.
-License: Apache
- Licensed under the Apache License, Version 2.0 (the "License");
- you may not use this file except in compliance with the License.
- You may obtain a copy of the License at
- .
- http://www.apache.org/licenses/LICENSE-2.0
- .
- Unless required by applicable law or agreed to in writing, software
- distributed under the License is distributed on an "AS IS" BASIS,
- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- See the License for the specific language governing permissions and
- limitations under the License.
- .
- On Debian systems you can find the full test of the Apache 2 license
- at /usr/share/common-licenses/Apache-2.0
-
-Files: mne/html/jquery*
-Copyright: 2005, 2013 jQuery Foundation, Inc.
-License: MIT
-
-Files: mne/html/d3*
-Copyright: 2013 Mike Bostock.
-License: BSD-3
-
-Files: mne/html/mpld3*
-Copyright: 2013, Jake Vanderplas
-License: BSD-3
-
-License: BSD
- Redistribution and use in source and binary forms, with or without
- modification, are permitted provided that the following conditions are
- met:
- .
- Redistributions of source code must retain the above copyright
- notice, this list of conditions and the following disclaimer.
- Redistributions in bytecode form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in
- the documentation and/or other materials provided with the
- distribution.
- .
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
- "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
- LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
- A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
- HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
- INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
- BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS
- OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR
- TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
- USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
- DAMAGE.
-
-License: BSD-3
- Redistribution and use in source and binary forms, with or without modification,
- are permitted provided that the following conditions are met:
- .
- a. Redistributions of source code must retain the above copyright notice,
- this list of conditions and the following disclaimer.
- b. Redistributions in binary form must reproduce the above copyright
- notice, this list of conditions and the following disclaimer in the
- documentation and/or other materials provided with the distribution.
- c. Neither the name of the MNE Developers nor the names of
- its contributors may be used to endorse or promote products
- derived from this software without specific prior written
- permission.
- .
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
- ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
- ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-License: MIT
- Permission is hereby granted, free of charge, to any person obtaining a copy
- of this software and associated documentation files (the "Software"), to deal
- in the Software without restriction, including without limitation the rights
- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
- copies of the Software, and to permit persons to whom the Software is
- furnished to do so, subject to the following conditions:
- .
- The above copyright notice and this permission notice shall be included in all
- copies or substantial portions of the Software.
- .
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- SOFTWARE.
diff --git a/debian/docs b/debian/docs
deleted file mode 100644
index 30d8556..0000000
--- a/debian/docs
+++ /dev/null
@@ -1 +0,0 @@
-*.rst
diff --git a/debian/links b/debian/links
deleted file mode 100644
index 677153c..0000000
--- a/debian/links
+++ /dev/null
@@ -1,6 +0,0 @@
-# no idea from what package to pick from - see mail to mentors # /usr/lib/python2.7/dist-packages/mne/html/bootstrap.min.js
-/usr/share/javascript/d3/d3.min.js /usr/lib/python2.7/dist-packages/mne/html/d3.v3.min.js
-# Debian has currently JQuery 1.7.2 - hope this fits with mne which contains 1.10.2
-/usr/share/javascript/jquery/jquery.min.js /usr/lib/python2.7/dist-packages/mne/html/jquery-1.10.2.min.js
-/usr/share/javascript/jquery-ui/jquery-ui.min.js /usr/lib/python2.7/dist-packages/mne/html/jquery-ui.min.js
-# This is not packaged for Debian /usr/lib/python2.7/dist-packages/mne/html/mpld3.v0.2.min.js
diff --git a/debian/manpages b/debian/manpages
deleted file mode 100644
index 0f65186..0000000
--- a/debian/manpages
+++ /dev/null
@@ -1 +0,0 @@
-debian/*.1
diff --git a/debian/mne.1 b/debian/mne.1
deleted file mode 100644
index 26f0c61..0000000
--- a/debian/mne.1
+++ /dev/null
@@ -1,33 +0,0 @@
-.TH MNE "1" "November 2013" "MNE 0.7.git" "User Commands"
-.SH NAME
-mne \- MEG and EEG data analysis
-.SH SYNOPSIS
-.B mne
-\fB<command>\fR \fI[options]\fR
-.SH OPTIONS
-Accepted commands :
-.IP
-\- browse_raw
-.IP
-\- bti2fiff
-.IP
-\- clean_eog_ecg
-.IP
-\- compute_proj_ecg
-.IP
-\- compute_proj_eog
-.IP
-\- flash_bem_model
-.IP
-\- kit2fiff
-.IP
-\- make_scalp_surfaces
-.IP
-\- maxfilter
-.IP
-\- surf2bem
-.SH EXAMPLE
-\fBmne\fR \fBbrowse_raw\fR \fI\-\-raw\fR sample_audvis_raw.fif
-.PP
-Getting help example:
-\fBmne\fR \fBcompute_proj_eog\fR \fI\-h\fR
diff --git a/debian/patches/changeset_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff b/debian/patches/changeset_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff
deleted file mode 100644
index fb14c71..0000000
--- a/debian/patches/changeset_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff
+++ /dev/null
@@ -1,59 +0,0 @@
-From: Yaroslav Halchenko <debian at onerussian.com>
-Subject: BF: do not force "str" if already unicode
- then, if actually was needed, it would need to be encoded, not just str"ed
-
-Lead in 0.8.3 debian package to the failure while running unittests:
-
-====================================================================== ERROR:
-Test rendering -*.fif files for mne report.
----------------------------------------------------------------------- Traceback
-(most recent call last):
- File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
- self.test(*self.arg)
- File "/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/tests/test_report.py", line
-88, in test_render_report
- report.save(fname=op.join(tempdir, 'report.html'), open_browser=False)
- File "/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/report.py", line 825, in
-save
- self._render_toc(verbose=self.verbose)
- File "<string>", line 2, in _render_toc
- File "/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/utils.py", line 551, in
-verbose
- ret = function(*args, **kwargs)
- File "/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/report.py", line 932, in
-_render_toc
- sectionvars=self._sectionvars)
- File
-"/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/externals/tempita/__init__.py",
-line 178, in substitute
- result, defs, inherit = self._interpret(ns)
- File
-"/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/externals/tempita/__init__.py",
-line 189, in _interpret
- self._interpret_codes(self._parsed, ns, out=parts, defs=defs)
- File
-"/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/externals/tempita/__init__.py",
-line 217, in _interpret_codes
- self._interpret_code(item, ns, out, defs)
- File
-"/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/externals/tempita/__init__.py",
-line 241, in _interpret_code
- out.append(self._repr(base, pos))
- File
-"/home/yoh/deb/gits/pkg-exppsy/mne-python/mne/externals/tempita/__init__.py",
-line 349, in _repr
- raise(e) UnicodeEncodeError: 'ascii' codec can't encode character u'\xa0' in
-position 14245: ordinal not in range(128)
-
---- a/mne/externals/tempita/__init__.py
-+++ b/mne/externals/tempita/__init__.py
-@@ -331,8 +331,8 @@ class Template(object):
- return ''
- if self._unicode:
- try:
-- value = str(value)
- if not is_unicode(value):
-+ value = str(value)
- value = value.decode('utf-8')
- except UnicodeDecodeError:
- value = bytes(value)
diff --git a/debian/patches/debian_paths b/debian/patches/debian_paths
deleted file mode 100644
index 1f73199..0000000
--- a/debian/patches/debian_paths
+++ /dev/null
@@ -1,56 +0,0 @@
-From: Michael Hanke <michael.hanke at gmail.com>
-Subject: Debian path config for ext. depdendencies
-
-This should deal with the issue of minified javascript libs, by using system
-libs. This does not deal with the missing bootstrap v3 library (the Debian
-package seems stuck on v2).
-
-The idea is to patch upstream to use system libs, whenever they are giving by
-their absolute path.
-
-Additional overhead comes from UTF-8 encoding handling that differs between
-Python 2x and 3x.
---- a/mne/report.py
-+++ b/mne/report.py
-@@ -29,7 +29,7 @@
- from .externals.decorator import decorator
- from .externals.tempita import HTMLTemplate, Template
- from .externals.six import BytesIO
--from .externals.six import moves
-+from .externals.six import moves, PY3
-
- tempdir = _TempDir()
- temp_fname = op.join(tempdir, 'test')
-@@ -712,21 +712,27 @@
- """Initialize the renderer.
- """
-
-- inc_fnames = ['jquery-1.10.2.min.js', 'jquery-ui.min.js',
-+ inc_fnames = ['/usr/share/javascript/jquery/jquery.min.js',
-+ '/usr/share/javascript/jquery-ui/jquery-ui.min.js',
- 'bootstrap.min.js', 'jquery-ui.min.css',
- 'bootstrap.min.css']
-
- include = list()
- for inc_fname in inc_fnames:
- logger.info('Embedding : %s' % inc_fname)
-- f = open(op.join(op.dirname(__file__), 'html', inc_fname),
-- 'r')
-+ if not os.path.isabs(inc_fname):
-+ inc_fname = op.join(op.dirname(__file__), 'html', inc_fname)
-+ f = open(inc_fname, 'r')
-+ if PY3:
-+ f_contents = f.read()
-+ else:
-+ f_contents = f.read().decode('UTF-8')
- if inc_fname.endswith('.js'):
- include.append(u'<script type="text/javascript">'
-- + f.read() + u'</script>')
-+ + f_contents + u'</script>')
- elif inc_fname.endswith('.css'):
- include.append(u'<style type="text/css">'
-- + f.read() + u'</style>')
-+ + f_contents + u'</style>')
- f.close()
-
- self.include = ''.join(include)
diff --git a/debian/patches/series b/debian/patches/series
deleted file mode 100644
index 87a6838..0000000
--- a/debian/patches/series
+++ /dev/null
@@ -1,2 +0,0 @@
-changeset_9c7ef6d10f1f767b742525ea31e42a65a0469327.diff
-debian_paths
diff --git a/debian/pycompat b/debian/pycompat
deleted file mode 100644
index 0cfbf08..0000000
--- a/debian/pycompat
+++ /dev/null
@@ -1 +0,0 @@
-2
diff --git a/debian/rules b/debian/rules
deleted file mode 100755
index cc3e3f3..0000000
--- a/debian/rules
+++ /dev/null
@@ -1,23 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-
-NOSETESTS=nosetests
-
-%:
- dh $@ --with python2 --buildsystem python_distutils
-
-override_dh_clean:
- rm -rf *.egg-info
- dh_clean
-
-override_dh_auto_build:
- dh_auto_build
- yui-compressor debian/JS/bootstrap/bootstrap.js > $(CURDIR)/mne/html/bootstrap.min.js
-
-override_dh_auto_test:
- MNE_SKIP_SAMPLE_DATASET_TESTS=true MNE_FORCE_SERIAL=true MNE_SKIP_NETWORK_TESTS=1 \
- xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" \
- $(NOSETESTS) mne
-
-get-orig-source:
- uscan --verbose --force-download --repack --compress xz
diff --git a/debian/source/format b/debian/source/format
deleted file mode 100644
index 163aaf8..0000000
--- a/debian/source/format
+++ /dev/null
@@ -1 +0,0 @@
-3.0 (quilt)
diff --git a/debian/watch b/debian/watch
deleted file mode 100644
index cf1b9df..0000000
--- a/debian/watch
+++ /dev/null
@@ -1,4 +0,0 @@
-version=3
-opts="uversionmangle=s/$/+dfsg/,filenamemangle=s/.*v([\d\.]+)\..*/python-mne_$1.orig.tar.gz/" \
- https://github.com/mne-tools/mne-python/tags .*/archive/v([\d\.]+)\.(?:tgz|tbz2|txz|tar\.(?:gz|bz2|xz))
-
diff --git a/doc/advanced_setup.rst b/doc/advanced_setup.rst
index 24303d5..903ef69 100644
--- a/doc/advanced_setup.rst
+++ b/doc/advanced_setup.rst
@@ -113,11 +113,11 @@ For people within the MGH/MIT/HMS Martinos Center mne is available on the networ
In a terminal do::
- setenv PATH /usr/pubsw/packages/python/epd/bin:${PATH}
+ setenv PATH /usr/pubsw/packages/python/anaconda/bin:${PATH}
If you use Bash replace the previous instruction with::
- export PATH=/usr/pubsw/packages/python/epd/bin:${PATH}
+ export PATH=/usr/pubsw/packages/python/anaconda/bin:${PATH}
Then start the python interpreter with:
@@ -127,4 +127,8 @@ Then type::
>>> import mne
-If you get a new prompt with no error messages, you should be good to go.
+If you get a new prompt with no error messages, you should be good to go.
+
+We encourage all Martinos center Python users to subscribe to the Martinos Python mailing list:
+
+https://mail.nmr.mgh.harvard.edu/mailman/listinfo/martinos-python
diff --git a/doc/sphinxext/numpy_ext/docscrape.py b/doc/sphinxext/numpy_ext/docscrape.py
index 84caa06..5e01fd8 100644
--- a/doc/sphinxext/numpy_ext/docscrape.py
+++ b/doc/sphinxext/numpy_ext/docscrape.py
@@ -6,7 +6,7 @@ import inspect
import textwrap
import re
import pydoc
-from warnings import warn
+from warnings import warn, catch_warnings
# Try Python 2 first, otherwise load from Python 3
try:
from StringIO import StringIO
@@ -435,7 +435,8 @@ class FunctionDoc(NumpyDocString):
func, func_name = self.get_func()
try:
# try to read signature
- argspec = inspect.getargspec(func)
+ with catch_warnings(record=True):
+ argspec = inspect.getargspec(func)
argspec = inspect.formatargspec(*argspec)
argspec = argspec.replace('*', '\*')
signature = '%s%s' % (func_name, argspec)
diff --git a/doc/whats_new.rst b/doc/whats_new.rst
index 0d980e2..612dc72 100644
--- a/doc/whats_new.rst
+++ b/doc/whats_new.rst
@@ -93,10 +93,12 @@ BUG
- Fix picking channels from forward operator could return a channel ordering different from ``info['chs']`` by `Chris Bailey`_
- - Fix dropping of events after downsampling stim channels by `Marijn van Vliet`
+ - Fix dropping of events after downsampling stim channels by `Marijn van Vliet`_
- Fix scaling in :func:``mne.viz.utils._setup_vmin_vmax`` by `Jaakko Leppakangas`_
+ - Fix order of component selection in :class:`mne.decoding.csp.CSP` by `Clemens Brunner`_
+
API
~~~
@@ -121,11 +123,11 @@ Authors
The committer list for this release is the following (preceded by number of commits):
- 269 Eric Larson
- 243 Jaakko Leppakangas
- 192 Alexandre Gramfort
+ 273 Eric Larson
+ 270 Jaakko Leppakangas
+ 194 Alexandre Gramfort
128 Denis A. Engemann
- 111 Jona Sassenhagen
+ 114 Jona Sassenhagen
107 Mark Wronkiewicz
97 Teon Brooks
81 Lorenzo De Santis
@@ -135,26 +137,19 @@ The committer list for this release is the following (preceded by number of comm
45 Mainak Jas
40 Alexandre Barachant
32 Marijn van Vliet
- 27 jaeilepp
- 26 jmontoyam
+ 26 Jair Montoya
22 Chris Holdgraf
16 Christopher J. Bailey
7 Christian Brodbeck
+ 5 Natalie Klein
+ 5 Fede Raimondo
5 Alan Leggitt
5 Roan LaPlante
- 5 natalieklein
+ 5 Ross Maddox
+ 4 Dan G. Wakeman
+ 3 Daniel McCloy
3 Daniel Strohmeier
- 3 Fede Raimondo
- 3 unknown
- 2 Dan G. Wakeman
- 2 Daniel McCloy
- 2 Fede
- 2 Ross Maddox
- 2 dgwakeman
- 2 sassenha
1 Jussi Nurminen
- 1 drammock
- 1 jona
.. _changes_0_9:
@@ -1238,3 +1233,5 @@ of commits):
.. _Samu Taulu: http://ilabs.washington.edu/institute-faculty/bio/i-labs-samu-taulu-dsc
.. _Lorenzo Desantis: https://github.com/lorenzo-desantis/
+
+.. _Clemens Brunner: https://github.com/cle1109
diff --git a/examples/decoding/plot_decoding_csp_eeg.py b/examples/decoding/plot_decoding_csp_eeg.py
index 60da01d..9b43901 100644
--- a/examples/decoding/plot_decoding_csp_eeg.py
+++ b/examples/decoding/plot_decoding_csp_eeg.py
@@ -107,7 +107,7 @@ evoked.data = csp.patterns_.T
evoked.times = np.arange(evoked.data.shape[0])
layout = read_layout('EEG1005')
-evoked.plot_topomap(times=[0, 1, 2, 61, 62, 63], ch_type='eeg', layout=layout,
+evoked.plot_topomap(times=[0, 1, 2, 3, 4, 5], ch_type='eeg', layout=layout,
scale_time=1, time_format='%i', scale=1,
unit='Patterns (AU)', size=1.5)
diff --git a/examples/decoding/plot_decoding_csp_space.py b/examples/decoding/plot_decoding_csp_space.py
index 4bc8fe4..da1ad28 100644
--- a/examples/decoding/plot_decoding_csp_space.py
+++ b/examples/decoding/plot_decoding_csp_space.py
@@ -103,5 +103,5 @@ print(scores.mean()) # should get better results than above
csp.fit_transform(epochs_data, labels)
evoked.data = csp.patterns_.T
evoked.times = np.arange(evoked.data.shape[0])
-evoked.plot_topomap(times=[0, 1, 201, 202], ch_type='grad',
+evoked.plot_topomap(times=[0, 1, 2, 3], ch_type='grad',
colorbar=False, size=1.5)
diff --git a/examples/visualization/plot_clickable_image.py b/examples/visualization/plot_clickable_image.py
index 9ae4bbc..411a60c 100644
--- a/examples/visualization/plot_clickable_image.py
+++ b/examples/visualization/plot_clickable_image.py
@@ -56,7 +56,7 @@ nepochs = 50
sr = 1000
nsec = 5
events = np.arange(nepochs).reshape([-1, 1])
-events = np.hstack([events, np.zeros([nepochs, 2])])
+events = np.hstack([events, np.zeros([nepochs, 2], dtype=int)])
data = np.random.randn(nepochs, nchans, sr * nsec)
info = mne.create_info(nchans, sr, ch_types='eeg')
epochs = mne.EpochsArray(data, info, events)
diff --git a/examples/visualization/plot_topography.py b/examples/visualization/plot_topography.py
index 1cb104a..828baee 100644
--- a/examples/visualization/plot_topography.py
+++ b/examples/visualization/plot_topography.py
@@ -11,7 +11,7 @@ Plot topographies for MEG sensors
import matplotlib.pyplot as plt
from mne import read_evokeds
-from mne.viz import plot_topo
+from mne.viz import plot_evoked_topo
from mne.datasets import sample
print(__doc__)
@@ -27,5 +27,5 @@ evoked = read_evokeds(fname, condition=condition, baseline=(None, 0))
###############################################################################
# Show topography
title = 'MNE sample data (condition : %s)' % evoked.comment
-plot_topo(evoked, title=title)
+plot_evoked_topo(evoked, title=title)
plt.show()
diff --git a/mne/__init__.py b/mne/__init__.py
index dfecae9..6f8b44a 100644
--- a/mne/__init__.py
+++ b/mne/__init__.py
@@ -17,7 +17,7 @@
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#
-__version__ = '0.10.dev0'
+__version__ = '0.10.0'
# have to import verbose first since it's needed by many things
from .utils import (set_log_level, set_log_file, verbose, set_config,
diff --git a/mne/connectivity/spectral.py b/mne/connectivity/spectral.py
index 264d25a..41beb75 100644
--- a/mne/connectivity/spectral.py
+++ b/mne/connectivity/spectral.py
@@ -4,13 +4,13 @@
from ..externals.six import string_types
from warnings import warn
-from inspect import getargspec, getmembers
+from inspect import getmembers
import numpy as np
from scipy.fftpack import fftfreq
from .utils import check_indices
-from ..fixes import tril_indices, partial
+from ..fixes import tril_indices, partial, _get_args
from ..parallel import parallel_func
from ..source_estimate import _BaseSourceEstimate
from .. import Epochs
@@ -744,7 +744,7 @@ def spectral_connectivity(data, method='coh', indices=None, sfreq=2 * np.pi,
con_method_types.append(m)
# determine how many arguments the compute_con_function needs
- n_comp_args = [len(getargspec(mtype.compute_con).args)
+ n_comp_args = [len(_get_args(mtype.compute_con))
for mtype in con_method_types]
# we only support 3 or 5 arguments
diff --git a/mne/cov.py b/mne/cov.py
index 5fb6f17..a28209d 100644
--- a/mne/cov.py
+++ b/mne/cov.py
@@ -12,7 +12,6 @@ import warnings
from copy import deepcopy
-import six
from distutils.version import LooseVersion
import numpy as np
@@ -1427,7 +1426,7 @@ def _regularized_covariance(data, reg=None):
skl_cov = ShrunkCovariance(shrinkage=reg,
store_precision=False,
assume_centered=True)
- elif isinstance(reg, six.string_types):
+ elif isinstance(reg, string_types):
if reg == 'ledoit_wolf':
try:
from sklearn.covariance import LedoitWolf
diff --git a/mne/decoding/base.py b/mne/decoding/base.py
index 8f20732..db33a38 100644
--- a/mne/decoding/base.py
+++ b/mne/decoding/base.py
@@ -5,11 +5,12 @@
#
# License: BSD (3-clause)
-import inspect
import warnings
-import six
import numpy as np
+from ..externals.six import iteritems
+from ..fixes import _get_args
+
class BaseEstimator(object):
"""Base class for all estimators in scikit-learn
@@ -32,7 +33,7 @@ class BaseEstimator(object):
# introspect the constructor arguments to find the model parameters
# to represent
- args, varargs, kw, default = inspect.getargspec(init)
+ args, varargs = _get_args(init, varargs=True)
if varargs is not None:
raise RuntimeError("scikit-learn estimators should always "
"specify their parameters in the signature"
@@ -97,7 +98,7 @@ class BaseEstimator(object):
# Simple optimisation to gain speed (inspect is slow)
return self
valid_params = self.get_params(deep=True)
- for key, value in six.iteritems(params):
+ for key, value in iteritems(params):
split = key.split('__', 1)
if len(split) > 1:
# nested objects case
@@ -146,7 +147,7 @@ def _pprint(params, offset=0, printer=repr):
params_list = list()
this_line_length = offset
line_sep = ',\n' + (1 + offset // 2) * ' '
- for i, (k, v) in enumerate(sorted(six.iteritems(params))):
+ for i, (k, v) in enumerate(sorted(iteritems(params))):
if type(v) is float:
# use str for representing floating point numbers
# this way we get consistent representation across
@@ -453,6 +454,7 @@ class LinearModel(BaseEstimator):
if times is None:
tmin = 0
+ times = 'auto'
else:
tmin = times[0]
@@ -601,6 +603,7 @@ class LinearModel(BaseEstimator):
if times is None:
tmin = 0
+ times = 'auto'
else:
tmin = times[0]
diff --git a/mne/decoding/csp.py b/mne/decoding/csp.py
index 0ff5eaa..007f39a 100644
--- a/mne/decoding/csp.py
+++ b/mne/decoding/csp.py
@@ -135,8 +135,13 @@ class CSP(TransformerMixin):
w_b = np.dot(np.dot(p, cov_b), p.T)
# and solve it
vals, vecs = linalg.eigh(w_a, w_b)
- # sort vectors by discriminative power using eigen values
- ind = np.argsort(np.maximum(vals, 1. / vals))[::-1]
+ # sort vectors by discriminative power using eigenvalues
+ ind = np.argsort(vals)[::-1]
+ vecs = vecs[:, ind]
+ # re-order (first, last, second, second last, third, ...)
+ n_vals = len(ind)
+ ind[::2] = np.arange(0, int(np.ceil(n_vals / 2.0)))
+ ind[1::2] = np.arange(n_vals - 1, int(np.ceil(n_vals / 2.0)) - 1, -1)
vecs = vecs[:, ind]
# and project
w = np.dot(vecs.T, p)
diff --git a/mne/epochs.py b/mne/epochs.py
index 305fabf..48394f0 100644
--- a/mne/epochs.py
+++ b/mne/epochs.py
@@ -11,7 +11,6 @@
from copy import deepcopy
import warnings
import json
-import inspect
import os.path as op
from distutils.version import LooseVersion
@@ -36,7 +35,7 @@ from .channels.channels import (ContainsMixin, UpdateChannelsMixin,
SetChannelsMixin, InterpolationMixin)
from .filter import resample, detrend, FilterMixin
from .event import _read_events_fif
-from .fixes import in1d
+from .fixes import in1d, _get_args
from .viz import (plot_epochs, _drop_log_stats,
plot_epochs_psd, plot_epochs_psd_topomap)
from .utils import (check_fname, logger, verbose, _check_type_picks,
@@ -561,7 +560,10 @@ class _BaseEpochs(ProjMixin, ContainsMixin, UpdateChannelsMixin,
self._current = 0
while True:
- data, event_id = self.next(True)
+ out = self.next(True)
+ if out is None:
+ return # properly signal the end of iteration
+ data, event_id = out
tmin = self.times[0]
info = deepcopy(self.info)
@@ -1233,7 +1235,11 @@ class _BaseEpochs(ProjMixin, ContainsMixin, UpdateChannelsMixin,
"""To make iteration over epochs easy.
"""
self._current = 0
- return self
+ while True:
+ x = self.next()
+ if x is None:
+ return
+ yield x
def next(self, return_event_id=False):
"""To make iteration over epochs easy.
@@ -1252,14 +1258,14 @@ class _BaseEpochs(ProjMixin, ContainsMixin, UpdateChannelsMixin,
"""
if self.preload:
if self._current >= len(self._data):
- raise StopIteration
+ return # signal the end
epoch = self._data[self._current]
self._current += 1
else:
is_good = False
while not is_good:
if self._current >= len(self.events):
- raise StopIteration
+ return # signal the end properly
epoch_noproj = self._get_epoch_from_raw(self._current)
epoch_noproj = self._detrend_offset_decim(epoch_noproj)
epoch = self._project_epoch(epoch_noproj)
@@ -2043,7 +2049,7 @@ def _minimize_time_diff(t_shorter, t_longer):
# The first set of keep masks to test
kwargs = dict(copy=False, bounds_error=False)
# this is a speed tweak, only exists for certain versions of scipy
- if 'assume_sorted' in inspect.getargspec(interp1d.__init__).args:
+ if 'assume_sorted' in _get_args(interp1d.__init__):
kwargs['assume_sorted'] = True
shorter_interp = interp1d(x1, t_shorter, fill_value=t_shorter[-1],
**kwargs)
diff --git a/mne/fixes.py b/mne/fixes.py
index d8ceec7..f7d47f2 100644
--- a/mne/fixes.py
+++ b/mne/fixes.py
@@ -33,6 +33,29 @@ from gzip import GzipFile
###############################################################################
# Misc
+# helpers to get function arguments
+if hasattr(inspect, 'signature'): # py35
+ def _get_args(function, varargs=False):
+ params = inspect.signature(function).parameters
+ args = [key for key, param in params.items()
+ if param.kind not in (param.VAR_POSITIONAL, param.VAR_KEYWORD)]
+ if varargs:
+ varargs = [param.name for param in params.values()
+ if param.kind == param.VAR_POSITIONAL]
+ if len(varargs) == 0:
+ varargs = None
+ return args, varargs
+ else:
+ return args
+else:
+ def _get_args(function, varargs=False):
+ out = inspect.getargspec(function) # args, varargs, keywords, defaults
+ if varargs:
+ return out[:2]
+ else:
+ return out[0]
+
+
class gzip_open(GzipFile): # python2.6 doesn't have context managing
def __enter__(self):
@@ -292,7 +315,7 @@ else:
return len(np.flatnonzero(X))
# little dance to see if np.copy has an 'order' keyword argument
-if 'order' in inspect.getargspec(np.copy)[0]:
+if 'order' in _get_args(np.copy):
def safe_copy(X):
# Copy, but keep the order
return np.copy(X, order='K')
@@ -560,7 +583,7 @@ def get_filtfilt():
"""Helper to get filtfilt from scipy"""
from scipy.signal import filtfilt
- if 'padlen' in inspect.getargspec(filtfilt)[0]:
+ if 'padlen' in _get_args(filtfilt):
return filtfilt
return _filtfilt
diff --git a/mne/io/brainvision/brainvision.py b/mne/io/brainvision/brainvision.py
index f030d9c..72adeb9 100644
--- a/mne/io/brainvision/brainvision.py
+++ b/mne/io/brainvision/brainvision.py
@@ -20,7 +20,7 @@ from ..meas_info import _empty_info
from ..base import _BaseRaw, _check_update_montage
from ..reference import add_reference_channels
-from ...externals.six import StringIO, u
+from ...externals.six import StringIO
from ...externals.six.moves import configparser
@@ -170,8 +170,8 @@ def _read_vmrk_events(fname, response_trig_shift=0):
an event as (onset, duration, trigger) sequence.
"""
# read vmrk file
- with open(fname) as fid:
- txt = fid.read()
+ with open(fname, 'rb') as fid:
+ txt = fid.read().decode('utf-8')
header = txt.split('\n')[0].strip()
start_tag = 'Brain Vision Data Exchange Marker File'
@@ -298,11 +298,11 @@ def _get_vhdr_info(vhdr_fname, eog, misc, response_trig_shift, scale):
if ext != '.vhdr':
raise IOError("The header file must be given to read the data, "
"not the '%s' file." % ext)
- with open(vhdr_fname, 'r') as f:
+ with open(vhdr_fname, 'rb') as f:
# extract the first section to resemble a cfg
- l = f.readline().strip()
+ l = f.readline().decode('utf-8').strip()
assert l == 'Brain Vision Data Exchange Header File Version 1.0'
- settings = f.read()
+ settings = f.read().decode('utf-8')
if settings.find('[Comment]') != -1:
params, settings = settings.split('[Comment]')
@@ -346,9 +346,9 @@ def _get_vhdr_info(vhdr_fname, eog, misc, response_trig_shift, scale):
ch_names[n] = name
if resolution == "": # For truncated vhdrs (e.g. EEGLAB export)
resolution = 0.000001
- unit = unit.replace('\xc2', '') # Remove unwanted control characters
+ unit = unit.replace(u'\xc2', u'') # Remove unwanted control characters
cals[n] = float(resolution)
- ranges[n] = _unit_dict.get(u(unit), unit) * scale
+ ranges[n] = _unit_dict.get(unit, unit) * scale
ch_names[-1] = 'STI 014'
cals[-1] = 1.
ranges[-1] = 1.
diff --git a/mne/io/meas_info.py b/mne/io/meas_info.py
index f8f3928..f2e808e 100644
--- a/mne/io/meas_info.py
+++ b/mne/io/meas_info.py
@@ -487,7 +487,7 @@ def read_bad_channels(fid, node):
@verbose
-def read_meas_info(fid, tree, verbose=None):
+def read_meas_info(fid, tree, clean_bads=False, verbose=None):
"""Read the measurement info
Parameters
@@ -496,6 +496,10 @@ def read_meas_info(fid, tree, verbose=None):
Open file descriptor.
tree : tree
FIF tree structure.
+ clean_bads : bool
+ If True, clean info['bads'] before running consistency check.
+ Should only be needed for old files where we did not check bads
+ before saving.
verbose : bool, str, int, or None
If not None, override default verbose level (see mne.verbose).
@@ -881,6 +885,8 @@ def read_meas_info(fid, tree, verbose=None):
# All kinds of auxliary stuff
info['dig'] = dig
info['bads'] = bads
+ if clean_bads:
+ info['bads'] = [b for b in bads if b in info['ch_names']]
info['projs'] = projs
info['comps'] = comps
info['acq_pars'] = acq_pars
diff --git a/mne/parallel.py b/mne/parallel.py
index 8c93acc..71f5d62 100644
--- a/mne/parallel.py
+++ b/mne/parallel.py
@@ -6,12 +6,12 @@
# License: Simplified BSD
from .externals.six import string_types
-import inspect
import logging
import os
from . import get_config
from .utils import logger, verbose
+from .fixes import _get_args
if 'MNE_FORCE_SERIAL' in os.environ:
_force_serial = True
@@ -70,7 +70,7 @@ def parallel_func(func, n_jobs, verbose=None, max_nbytes='auto'):
return parallel, my_func, n_jobs
# check if joblib is recent enough to support memmaping
- p_args = inspect.getargspec(Parallel.__init__).args
+ p_args = _get_args(Parallel.__init__)
joblib_mmap = ('temp_folder' in p_args and 'max_nbytes' in p_args)
cache_dir = get_config('MNE_CACHE_DIR', None)
diff --git a/mne/preprocessing/ica.py b/mne/preprocessing/ica.py
index 0d7f42b..57a7f04 100644
--- a/mne/preprocessing/ica.py
+++ b/mne/preprocessing/ica.py
@@ -4,7 +4,7 @@
#
# License: BSD (3-clause)
-from inspect import getargspec, isfunction
+from inspect import isfunction
from collections import namedtuple
from copy import deepcopy
@@ -44,12 +44,17 @@ from ..io.write import start_file, end_file, write_id
from ..utils import (check_version, logger, check_fname, verbose,
_reject_data_segments, check_random_state,
_get_fast_dot, compute_corr)
+from ..fixes import _get_args
from ..filter import band_pass_filter
from .bads import find_outliers
from .ctps_ import ctps
from ..externals.six import string_types, text_type
+__all__ = ['ICA', 'ica_find_ecg_events', 'ica_find_eog_events',
+ 'get_score_funcs', 'read_ica', 'run_ica']
+
+
def _make_xy_sfunc(func, ndim_output=False):
"""Aux function"""
if ndim_output:
@@ -75,17 +80,13 @@ def get_score_funcs():
if isfunction(f) and not n.startswith('_')]
score_funcs.update(dict((n, _make_xy_sfunc(f))
for n, f in xy_arg_dist_funcs
- if getargspec(f).args == ['u', 'v']))
+ if _get_args(f) == ['u', 'v']))
score_funcs.update(dict((n, _make_xy_sfunc(f, ndim_output=True))
for n, f in xy_arg_stats_funcs
- if getargspec(f).args == ['x', 'y']))
+ if _get_args(f) == ['x', 'y']))
return score_funcs
-__all__ = ['ICA', 'ica_find_ecg_events', 'ica_find_eog_events',
- 'get_score_funcs', 'read_ica', 'run_ica']
-
-
class ICA(ContainsMixin):
"""M/EEG signal decomposition using Independent Component Analysis (ICA)
@@ -1859,7 +1860,8 @@ def read_ica(fname):
fid, tree, _ = fiff_open(fname)
try:
- info, meas = read_meas_info(fid, tree)
+ # we used to store bads that weren't part of the info...
+ info, meas = read_meas_info(fid, tree, clean_bads=True)
except ValueError:
logger.info('Could not find the measurement info. \n'
'Functionality requiring the info won\'t be'
@@ -1919,7 +1921,7 @@ def read_ica(fname):
return x.astype(np.float64)
ica_init = dict((k, v) for k, v in ica_init.items()
- if k in getargspec(ICA.__init__).args)
+ if k in _get_args(ICA.__init__))
ica = ICA(**ica_init)
ica.current_fit = current_fit
ica.ch_names = ch_names.split(':')
diff --git a/mne/realtime/epochs.py b/mne/realtime/epochs.py
index 1bf0df7..8a6efe1 100644
--- a/mne/realtime/epochs.py
+++ b/mne/realtime/epochs.py
@@ -266,16 +266,13 @@ class RtEpochs(_BaseEpochs):
current_time = time.time()
if current_time > (self._last_time + self.isi_max):
logger.info('Time of %s seconds exceeded.' % self.isi_max)
- raise StopIteration
+ return # signal the end properly
if len(self._epoch_queue) > self._current:
epoch = self._epoch_queue[self._current]
event_id = self._events[self._current][-1]
self._current += 1
self._last_time = current_time
- if return_event_id:
- return epoch, event_id
- else:
- return epoch
+ return (epoch, event_id) if return_event_id else epoch
if self._started:
if first:
logger.info('Waiting for epoch %d' % (self._current + 1))
diff --git a/mne/report.py b/mne/report.py
index 9eabdd6..ee0418f 100644
--- a/mne/report.py
+++ b/mne/report.py
@@ -1745,12 +1745,13 @@ class Report(object):
for surf_name in ['*inner_skull', '*outer_skull', '*outer_skin']:
surf_fname = glob(op.join(bem_path, surf_name + '.surf'))
if len(surf_fname) > 0:
- surf_fname = surf_fname[0]
+ surf_fnames.append(surf_fname[0])
else:
warnings.warn('No surface found for %s.' % surf_name)
- return self._render_image(mri_fname, cmap='gray')
- surf_fnames.append(surf_fname)
-
+ continue
+ if len(surf_fnames) == 0:
+ warnings.warn('No surfaces found at all, rendering empty MRI')
+ return self._render_image(mri_fname, cmap='gray')
# XXX : find a better way to get max range of slices
nim = nib.load(mri_fname)
data = nim.get_data()
diff --git a/mne/tests/test_docstring_parameters.py b/mne/tests/test_docstring_parameters.py
index 0d4654f..c4d9548 100644
--- a/mne/tests/test_docstring_parameters.py
+++ b/mne/tests/test_docstring_parameters.py
@@ -14,6 +14,7 @@ from inspect import getsource
import mne
from mne.utils import run_tests_if_main
+from mne.fixes import _get_args
public_modules = [
# the list of modules users need to access for all functionality
@@ -81,7 +82,7 @@ def check_parameters_match(func, doc=None):
return incorrect
if inspect.isdatadescriptor(func):
return incorrect
- args, varargs, varkw, defaults = inspect.getargspec(func)
+ args = _get_args(func)
# drop self
if len(args) > 0 and args[0] == 'self':
args = args[1:]
diff --git a/mne/tests/test_filter.py b/mne/tests/test_filter.py
index d09d39b..cd67ab9 100644
--- a/mne/tests/test_filter.py
+++ b/mne/tests/test_filter.py
@@ -132,9 +132,9 @@ def test_notch_filters():
set_log_file()
with open(log_file) as fid:
out = fid.readlines()
- if len(out) != 2:
+ if len(out) != 2 and len(out) != 3: # force_serial: len(out) == 3
raise ValueError('Detected frequencies not logged properly')
- out = np.fromstring(out[1], sep=', ')
+ out = np.fromstring(out[-1], sep=', ')
assert_array_almost_equal(out, freqs)
new_power = np.sqrt(sum_squared(b) / b.size)
assert_almost_equal(new_power, orig_power, tol)
diff --git a/mne/tests/test_report.py b/mne/tests/test_report.py
index e708d82..f10167b 100644
--- a/mne/tests/test_report.py
+++ b/mne/tests/test_report.py
@@ -2,6 +2,7 @@
# Teon Brooks <teon.brooks at gmail.com>
#
# License: BSD (3-clause)
+import sys
import os
import os.path as op
import glob
@@ -9,6 +10,7 @@ import warnings
import shutil
from nose.tools import assert_true, assert_equal, assert_raises
+from nose.plugins.skip import SkipTest
from mne import Epochs, read_events, pick_types, read_evokeds
from mne.io import Raw
@@ -71,6 +73,8 @@ def test_render_report():
epochs.average().save(evoked_fname)
report = Report(info_fname=raw_fname_new, subjects_dir=subjects_dir)
+ if sys.version.startswith('3.5'): # XXX Some strange MPL/3.5 error...
+ raise SkipTest('Python 3.5 and mpl have unresolved issues')
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
report.parse_folder(data_path=tempdir, on_error='raise')
diff --git a/mne/utils.py b/mne/utils.py
index 43bcb3a..a7db386 100644
--- a/mne/utils.py
+++ b/mne/utils.py
@@ -34,7 +34,7 @@ from .externals.six.moves import urllib
from .externals.six import string_types, StringIO, BytesIO
from .externals.decorator import decorator
-from .fixes import isclose
+from .fixes import isclose, _get_args
logger = logging.getLogger('mne') # one selection here used across mne-python
logger.propagate = False # don't propagate (in case of multiple imports)
@@ -70,7 +70,9 @@ def _get_call_line(in_verbose=False):
# or decorated by `verbose`.
back = 2 if not in_verbose else 4
call_frame = inspect.getouterframes(inspect.currentframe())[back][0]
- return inspect.getframeinfo(call_frame).code_context[0].strip()
+ context = inspect.getframeinfo(call_frame).code_context
+ context = 'unknown' if context is None else context[0].strip()
+ return context
def _sort_keys(x):
@@ -527,7 +529,7 @@ def verbose(function, *args, **kwargs):
dec : function
The decorated function
"""
- arg_names = inspect.getargspec(function).args
+ arg_names = _get_args(function)
default_level = verbose_level = None
if len(arg_names) > 0 and arg_names[0] == 'self':
default_level = getattr(args[0], 'verbose', None)
@@ -816,7 +818,7 @@ def run_subprocess(command, verbose=None, *args, **kwargs):
if p.returncode:
print(output)
err_fun = subprocess.CalledProcessError.__init__
- if 'output' in inspect.getargspec(err_fun).args:
+ if 'output' in _get_args(err_fun):
raise subprocess.CalledProcessError(p.returncode, command, output)
else:
raise subprocess.CalledProcessError(p.returncode, command)
diff --git a/mne/viz/_3d.py b/mne/viz/_3d.py
index 044bbe9..cf94942 100644
--- a/mne/viz/_3d.py
+++ b/mne/viz/_3d.py
@@ -14,7 +14,6 @@ from __future__ import print_function
from ..externals.six import string_types, advance_iterator
import os.path as op
-import inspect
import warnings
from itertools import cycle
import base64
@@ -30,6 +29,7 @@ from ..transforms import (read_trans, _find_trans, apply_trans,
combine_transforms, _get_mri_head_t, _ensure_trans,
invert_transform)
from ..utils import get_subjects_dir, logger, _check_subject, verbose
+from ..fixes import _get_args
from ..defaults import _handle_default
from .utils import mne_analyze_colormap, _prepare_trellis, COLORS
from ..externals.six import BytesIO
@@ -632,7 +632,7 @@ def plot_source_estimates(stc, subject=None, surface='inflated', hemi='lh',
hemis = [hemi]
title = subject if len(hemis) > 1 else '%s - %s' % (subject, hemis[0])
- args = inspect.getargspec(Brain.__init__)[0]
+ args = _get_args(Brain.__init__)
kwargs = dict(title=title, figure=figure, config_opts=config_opts,
subjects_dir=subjects_dir)
if 'views' in args:
diff --git a/mne/viz/topo.py b/mne/viz/topo.py
index e847b0c..bc869a7 100644
--- a/mne/viz/topo.py
+++ b/mne/viz/topo.py
@@ -159,7 +159,7 @@ def _plot_topo_onpick(event, show_func=None, colorbar=False):
# make sure that the swipe gesture in OS-X doesn't open many figures
orig_ax = event.inaxes
- if event.inaxes is None:
+ if event.inaxes is None or '_mne_ch_idx' not in vars(orig_ax):
return
import matplotlib.pyplot as plt
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