[med-svn] [python-mne] 152/376: fixing manual

[Yaroslav Halchenko]

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yoh pushed a commit to annotated tag v0.1
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commit 0f6c6ca14733d0a71d5643c862ebc471c7b54ea9
Author: Emily Ruzich <emilyr at nmr.mgh.harvard.edu>
Date:   Mon Mar 21 12:43:37 2011 -0400

    fixing manual
---
 doc/source/manual/browse.rst     |  6 +++---
 doc/source/manual/list.rst       |  2 +-
 doc/source/manual/mne.rst        |  4 ++--
 doc/source/manual/sampledata.rst | 12 ++++++------
 4 files changed, 12 insertions(+), 12 deletions(-)

diff --git a/doc/source/manual/browse.rst b/doc/source/manual/browse.rst
index d23890b..28a33f6 100644
--- a/doc/source/manual/browse.rst
+++ b/doc/source/manual/browse.rst
@@ -1338,7 +1338,7 @@ the following items:
     Starts mne_analyze in the head position visualization mode and shows
     the relative position of the MEG sensor array and the head using
     the data in the presently open raw data file. For more details on
-    the head position visualization mode, see Section 7.21.
+    the head position visualization mode, see Section 7.21.**what?? does not exist!**
 
 **Quit mne_analyze...**
 
@@ -2424,7 +2424,7 @@ Since the signal-space projection modifies the signal vectors
 originating in the brain, it is necessary to apply the projection
 to the forward solution in the course of inverse computations. This
 is accomplished by mne_inverse_operator as
-described in Section 6.4. For more information on SSP,
+described in :ref:`CBBDDBGF`. For more information on SSP,
 please consult the references listed in Section 13.4.
 
 .. _CACFGIEC:
@@ -2583,7 +2583,7 @@ are read by mne_inverse_operator and
 applied to the forward solution as well as appropriate. Inclusion
 of the projections into the covariance matrix limits the possibilities
 to use the ``--bad`` and ``--proj`` options in mne_inverse_operator ,
-see Section 6.4.
+see :ref:`CBBDDBGF`.
 
 .. _CACGHEGC:
 
diff --git a/doc/source/manual/list.rst b/doc/source/manual/list.rst
index 1be7747..a9496ad 100644
--- a/doc/source/manual/list.rst
+++ b/doc/source/manual/list.rst
@@ -54,7 +54,7 @@ in italics. :ref:`BABDJHGH` lists various supplementary utilities.
     |                            | :ref:`CHDDIBAH`.                           |
     +----------------------------+--------------------------------------------+
     | mne_inverse_operator       | Compute the inverse operator decomposition |
-    |                            | see Section 6.4.                           |
+    |                            | see :ref:`CBBDDBGF`.                       |
     +----------------------------+--------------------------------------------+
     | *mne_make_movie*           | Make movies in batch mode, see             |
     |                            | :ref:`CBBECEDE`.                           |
diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst
index 0f7a7f4..c21a634 100644
--- a/doc/source/manual/mne.rst
+++ b/doc/source/manual/mne.rst
@@ -1042,11 +1042,11 @@ Label processing
     specify regions of interests (ROIs). A label file name should end
     with ``-lh.label`` for left-hemisphere ROIs and with ``-rh.label`` for
     right-hemisphere ones. The corresponding output files are tagged
-    with ``-lh-`` <data type> ``.amp`` and ``-rh-`` <data type> ``.amp`` , respectively. <data type> equals ``'mne`` ' for
+    with ``-lh-`` <data type> ``.amp`` and ``-rh-`` <data type> ``.amp``, respectively. <data type> equals ``'mne`` ' for
     expected current data and ``'spm`` ' for
     dSPM data. Each line of the output file contains the waveform of
     the output quantity at one of the source locations falling inside
-    the ROI. For more information about the label output formats, see Section 7.13.3.1.
+    the ROI. For more information about the label output formats, see :ref:`CACJJGFA`.
 
 **\---labelcoords**
 
diff --git a/doc/source/manual/sampledata.rst b/doc/source/manual/sampledata.rst
index 6507503..ccf7a13 100644
--- a/doc/source/manual/sampledata.rst
+++ b/doc/source/manual/sampledata.rst
@@ -727,14 +727,14 @@ Select Windows/Show viewer... .
 After a while the viewer window appears. Click on the N100m peak
 again. Once the field map preparation computations are complete,
 the magnetic field and potential maps appear. Investigate the viewer
-window options with help of Section 7.10.
+window options with help of :ref:`CACEFFJF`.
 
 Show current estimates
 ======================
 
 The options affecting the current estimates are accessible
 from Adjust/Estimate parameters... .
-With help of Section 7.12, investigate the effects of the
+With help of :ref:`CACBHDBF`, investigate the effects of the
 parameter settings.
 
 Labels and timecourses
@@ -745,14 +745,14 @@ called ``label`` :
 
 ``mkdir label``
 
-Using the information in Section 7.13.4 create two
-labels: ``A-lh.label`` and ``A-rh.label`` in the
+Using the information in :ref:`CACJCFJJ`, create two
+labels ``A-lh.label`` and ``A-rh.label`` in the
 approximate location of the left and right auditory cortices. Save
 these labels in the newly created ``label`` directory.
 
 Load all labels from the ``label`` directory and
 investigate the timecourses in these two labels as well as at invidual
-vertices. Information on label processing can be found from Section 7.13.
+vertices. Information on label processing can be found from :ref:`CACCCFHH`.
 
 Morphing
 ========
@@ -760,7 +760,7 @@ Morphing
 Goto to ``$SUBJECTS_DIR`` and create the directory ``morph-maps`` .
 Load the inflated surface for subject morph as
 the morphing surfaces. Try switching between the original and morphing
-surfaces. More information about morphing is available in Section 7.9 and
+surfaces. More information about morphing is available in :ref:`CACGBEIB` and
 in :ref:`ch_morph`.
 
 There is also a left-hemisphere occipital patch file available

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