[med-svn] [python-mne] 179/376: fixing manual
Yaroslav Halchenko
debian at onerussian.com
Fri Nov 27 17:22:32 UTC 2015
This is an automated email from the git hooks/post-receive script.
yoh pushed a commit to annotated tag v0.1
in repository python-mne.
commit d2bb290d801fcd775416b4b1b8da3f25cb3b0947
Author: Emily Ruzich <emilyr at nmr.mgh.harvard.edu>
Date: Thu Mar 31 12:24:29 2011 -0400
fixing manual
---
doc/source/manual/AppA.rst | 2 +-
doc/source/manual/AppB.rst | 4 +--
doc/source/manual/AppReleaseNotes.rst | 56 +++++++++++++++++------------------
3 files changed, 31 insertions(+), 31 deletions(-)
diff --git a/doc/source/manual/AppA.rst b/doc/source/manual/AppA.rst
index c8a88b4..2b14ea8 100755
--- a/doc/source/manual/AppA.rst
+++ b/doc/source/manual/AppA.rst
@@ -374,4 +374,4 @@ is:
.. note:: If left and right are flipped in BrainSuite, use the --flip option in mne_convert_surface to set the coordinate transformation correctly.
-.. note:: The BrainSuite scalp surface can be also used for visualization in mne_analyze , see Section 7.16.1.
+.. note:: The BrainSuite scalp surface can be also used for visualization in mne_analyze , see :ref:`CHDCGHIF`.
diff --git a/doc/source/manual/AppB.rst b/doc/source/manual/AppB.rst
index 682f73e..b77a749 100755
--- a/doc/source/manual/AppB.rst
+++ b/doc/source/manual/AppB.rst
@@ -127,7 +127,7 @@ This chapter contains information about the options accepted
by the program mne_compute_mne ,
which is gradually becoming obsolete. All of its functions will
be eventually included to mne_make_movie ,
-see Section 6.5. At this time, mne_compute_mne is
+see :ref:`CBBECEDE`. At this time, mne_compute_mne is
still needed to produce time-collapsed w files unless you are willing
to write a Matlab script of your own for this purpose.
@@ -256,7 +256,7 @@ the following command-line options:
**\---pred <name>**
Save the predicted data into this file. This is a fif file containing
- the predicted data waveforms, see Section 6.2.7.
+ the predicted data waveforms, see :ref:`CHDCACDC`.
**\---outputnorm <name>**
diff --git a/doc/source/manual/AppReleaseNotes.rst b/doc/source/manual/AppReleaseNotes.rst
index 106f2b4..49fc87a 100755
--- a/doc/source/manual/AppReleaseNotes.rst
+++ b/doc/source/manual/AppReleaseNotes.rst
@@ -30,7 +30,7 @@ The following overall changes have been made:
of Neuromag software was written.
- The MEG sensor information is now imported from the coil definition file
- instead of being hardcoded in the software. For details, see Section 5.8.4.
+ instead of being hardcoded in the software. For details, see :ref:`BJECIGEB`.
- CTF and 4D Neuroimaging sensors are now supported.
@@ -77,9 +77,9 @@ The following changes have been made in mne_analyze :
now supported.
- An iterative coordinate alignment procedure was added, see
- Section 7.16.
+ :ref:`CACEHGCD`.
-- Utility to view continuous HPI information was added, see Section 7.17.
+- Utility to view continuous HPI information was added, see :ref:`CACIADAI`.
- Several small changes and bug fixes were done.
@@ -164,24 +164,24 @@ The following new features have been added:
- Sketchy surface display mode for source spaces with selection
triangulation information created with the ``--ico`` option
- to mne_setup_source_space .
+ to mne_setup_source_space.
- Rotation of the coordinate frame in the coordinate system
- alignment dialog, see Section 7.16;
+ alignment dialog, see :ref:`CACEHGCD`.
- Several new graphics output file formats as well as automatic
- and snapshot output modes, see Section 7.8.8.
+ and snapshot output modes, see :ref:`CACIJFII`.
- It is now possible to inquire timecourses from stc overlays.
Both labels and surface picking are supported.
- Added an option to include surface vertex numbers to the timecourse output,
- see Section 7.13.3.1.
+ see :ref:`CACJJGFA`.
-- Overlays matching the scalp surface can now be loaded, see Section 7.14.
+- Overlays matching the scalp surface can now be loaded, see :ref:`CACFCHEC`.
- The dipole display dialog has now control over the dipole
- display properties. Multiple dipoles can be now displayed, see Section 7.15.3.
+ display properties. Multiple dipoles can be now displayed, see :ref:`CACGGAIA`.
- Time stepping with cursor keys has been added.
@@ -200,7 +200,7 @@ frames is now included in the output file.
mne_make_movie
==============
-Added the ``--labelverts`` option, see Section 6.5.8.
+Added the ``--labelverts`` option, see :ref:`CBBHHCEF`.
mne_surf2bem
============
@@ -208,7 +208,7 @@ mne_surf2bem
Added the ``--shift`` option to move surface vertices
outwards. Fixed some loopholes in topology checks. Also added the ``--innershift`` option
to mne_setup_forward_model . For
-more information, see :ref:`CIHDBFEG` and Section 5.6.
+more information, see :ref:`CIHDBFEG` and :ref:`BEHCACCJ`.
mne_forward_solution
====================
@@ -236,7 +236,7 @@ The following changes have been made in mne_inverse_operator :
mne_compute_raw_inverse
=======================
-This utility is now documented in Section 6.6. The
+This utility is now documented in :ref:`CBBCGHAH`. The
utility mne_make_raw_inverse_operator has
been removed from the software.
@@ -394,10 +394,10 @@ New features include:
or trackball.
- Added remote control of the FreeSurfer MRI
- viewer (tkmedit ), see Section 7.18.
+ viewer (tkmedit ), see :ref:`CACCHCBF`.
- Added fitting of single equivalent current dipoles and channel
- selections, see Section 7.15.
+ selections, see :ref:`CHDGHIJJ`.
- Added loading of FreeSurfer cortical
parcellation data as labels.
@@ -411,12 +411,12 @@ New features include:
- A shortcut button to direct a file selector to the appropriate
default directory was added to several file loading dialogs.
-- The vertex coordinates can now be displayed, see Section 7.8.4.
+- The vertex coordinates can now be displayed, see :ref:`CHDIEHDH`.
mne_average_forward_solutions
-----------------------------
-EEG forward solutions are now averaged as well, see Section 5.10.
+EEG forward solutions are now averaged as well, see :ref:`CHDBBFCA`.
mne_browse_raw and mne_process_raw
----------------------------------
@@ -516,7 +516,7 @@ mne_compute_raw_inverse
-----------------------
The ``--digtrig`` , ``--extra`` , ``--noextra`` , ``--split`` , ``--labeldir`` , and ``--out`` options
-were added, see Section 6.6.
+were added, see :ref:`CBBCGHAH`.
mne_convert_surface
-------------------
@@ -545,7 +545,7 @@ mne_forward_solution
--------------------
Added code to compute the derivatives of with respect to
-the dipole position coordinates, see Section 5.9.
+the dipole position coordinates, see :ref:`CHDDIBAH`.
mne_list_bem
------------
@@ -563,7 +563,7 @@ mne_make_movie
--------------
Added the --noscalebar, --nocomments, --morphgrade, --rate,
-and --pickrange options, see Section 6.5.
+and --pickrange options, see :ref:`CBBECEDE`.
mne_make_source_space
---------------------
@@ -572,7 +572,7 @@ The ``--spacing`` option is now implemented in this
program, which means mne_mris_trix is
now obsolete. The mne_setup_source_space script
was modified accordingly. Support for tri, dec, and dip files was dropped,
-see Section 5.4.
+see :ref:`BEHCGJDD`.
mne_mdip2stc
------------
@@ -665,7 +665,7 @@ an MRI overlay, see Section 9.4.
mne_volume_source_space
-----------------------
-Create a a grid of source points within a volume, see Section 5.5. mne_volume_source_space also
+Create a a grid of source points within a volume, see :ref:`BJEFEHJI`. mne_volume_source_space also
optionally creates a trilinear interpolator matrix to facilitate
converting values a distribution in the volume grid into an MRI
overlay using mne_volume_data2mri ,
@@ -747,7 +747,7 @@ mne_analyze
===========
- Both hemispheres can now be displayed
- simultaneously, see Section 7.8.3.
+ simultaneously, see :ref:`CACCABEA`.
- If the source space was created with mne_make_source_space version 2.3
or later, the subject's surface data are automatically
@@ -772,7 +772,7 @@ Miscellaneous
For details, try mne_check_surface --help.
- mne_compute_raw_inverse now
- has the --orignames option, see Section 6.6.1.
+ has the --orignames option, see :ref:`CHDEIHFA`.
- Added --headcoord option to mne_convert_dig_data ,
see Section 9.3.
@@ -781,7 +781,7 @@ Miscellaneous
see Section 9.8.
- Added the --morph option to mne_setup_source_space and mne_make_source_space ,
- see :ref:`CIHCHDAE` and Section 5.4, respectively.
+ see :ref:`CIHCHDAE` and :ref:`BEHCGJDD`, respectively.
- Added the --prefix option to mne_morph_labels ,
see Section 8.5.
@@ -804,9 +804,9 @@ mne_analyze
===========
- Added a new restricted mode for visualizing
- head position within the helmet, see Sections 7.2 and 7.21.
+ head position within the helmet, see :ref:`CHDJECCG` and Section 7.21.**doesn't exist**
-- Added information about mne_make_scalp_surfaces to Section 7.16.1.
+- Added information about mne_make_scalp_surfaces to :ref:`CHDCGHIF`.
mne_browse_raw
==============
@@ -843,10 +843,10 @@ Miscellaneous
see Section 9.7.1.
- Added --alpha option to mne_make_movie ,
- see Section 6.5.5.
+ see :ref:`CBBBBHIF`.
- Added --noiserank option to mne_inverse_operator and mne_do_inverse_operator ,
- see Sections 6.4 and 3.13, respectively.
+ see :ref:`CBBDDBGF`and Section 3.13, respectively.
- The fif output from mne_convert_dig_data now
includes the transformation between the digitizer and MNE head coordinate
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git
More information about the debian-med-commit
mailing list