[med-svn] [python-mne] 266/376: DOC : fixing manual (refs + links)

Fri Nov 27 17:23:04 UTC 2015

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commit ff70699de43ce84fda0eb6ac337a6a9aad747510
Author: Alexandre Gramfort <alexandre.gramfort at inria.fr>
Date:   Wed May 25 17:29:32 2011 -0400

    DOC : fixing manual (refs + links)
---
 doc/source/manual/AppA.rst            |  2 +-
 doc/source/manual/AppB.rst            |  6 +++---
 doc/source/manual/AppEULA.rst         |  2 +-
 doc/source/manual/AppInstall.rst      |  4 ++--
 doc/source/manual/AppReleaseNotes.rst | 16 +++++++++-------
 doc/source/manual/analyze.rst         |  5 ++---
 doc/source/manual/browse.rst          |  6 +++---
 doc/source/manual/convert.rst         |  2 +-
 doc/source/manual/cookbook.rst        |  6 +++---
 doc/source/manual/forward.rst         | 15 ++++++++++++---
 doc/source/manual/intro.rst           | 12 ++++++------
 doc/source/manual/list.rst            | 16 +++++++---------
 doc/source/manual/matlab.rst          | 16 ++++++++--------
 doc/source/manual/mne.rst             |  2 +-
 doc/source/manual/sampledata.rst      |  7 +++----
 15 files changed, 62 insertions(+), 55 deletions(-)

diff --git a/doc/source/manual/AppA.rst b/doc/source/manual/AppA.rst
index b250df7..3434c49 100755
--- a/doc/source/manual/AppA.rst
+++ b/doc/source/manual/AppA.rst
@@ -1,6 +1,6 @@
 
 
-.. _BGBDEIGC:
+.. _create_bem_model:
 
 =======================
 Creating the BEM meshes
diff --git a/doc/source/manual/AppB.rst b/doc/source/manual/AppB.rst
index 520ff98..c597197 100755
--- a/doc/source/manual/AppB.rst
+++ b/doc/source/manual/AppB.rst
@@ -1,6 +1,6 @@
 
 
-.. _BGBDEIGC:
+.. _setup_martinos:
 
 ============================
 Setup at the Martinos Center
@@ -9,14 +9,14 @@ Setup at the Martinos Center
 This Appendix contains information specific to the Martinos
 Center setup.
 
-.. _CIHCDHGI:
+.. _user_environment_martinos:
 
 User environment
 ################
 
 In the Martinos Center computer network, the 2.7 version
 of MNE is located at /usr/pubsw/packages/mne/stable. To use this
-version, follow  :ref:`CIHCDHGI` substituting /usr/pubsw/packages/mne/stable
+version, follow :ref:`user_environment` substituting /usr/pubsw/packages/mne/stable
 for <*MNE*> and /usr/pubsw/packages/matlab/current
 for <*Matlab*> . For most users,
 the default shell is tcsh.
diff --git a/doc/source/manual/AppEULA.rst b/doc/source/manual/AppEULA.rst
index ebf17b3..c85d38b 100755
--- a/doc/source/manual/AppEULA.rst
+++ b/doc/source/manual/AppEULA.rst
@@ -1,6 +1,6 @@
 
 
-.. _BGBDEIGC:
+.. _licence:
 
 =================
 Licence agreement
diff --git a/doc/source/manual/AppInstall.rst b/doc/source/manual/AppInstall.rst
index da2888b..8befa0a 100755
--- a/doc/source/manual/AppInstall.rst
+++ b/doc/source/manual/AppInstall.rst
@@ -1,6 +1,6 @@
 
 
-.. _BGBDEIGC:
+.. _install_config:
 
 ==============================
 Installation and configuration
@@ -154,7 +154,7 @@ How to get started
 After you have installed the software, a good place to start
 is to look at the manual:
 
-- Source the correct setup script, see :ref:`CIHCDHGI`,
+- Source the correct setup script, see :ref:`user_environment`,
   and
 
 - Say: ``mne_view_manual`` .
diff --git a/doc/source/manual/AppReleaseNotes.rst b/doc/source/manual/AppReleaseNotes.rst
index 9aae983..0f03fd2 100755
--- a/doc/source/manual/AppReleaseNotes.rst
+++ b/doc/source/manual/AppReleaseNotes.rst
@@ -1,6 +1,6 @@
 
 
-.. _BGBDEIGC:
+.. _release_notes:
 
 =============
 Release notes
@@ -15,7 +15,8 @@ Release notes for MNE software 2.4
 Manual
 ======
 
-The manual has been significantly expanded and reorganized. :ref:`ch_interactive_analysis`describing mne_analyze has
+The manual has been significantly expanded and reorganized.
+:ref:`ch_interactive_analysis` describing mne_analyze has
 been added. :ref:`ch_sample_data` contains instructions for analyzing
 the sample data set provided with the software. Useful background
 material is listed in :ref:`ch_reading`. Almost all utility programs
@@ -57,7 +58,8 @@ The following import utilities were added:
   EEG data from Tufts university to fif format, see :ref:`BEHDGAIJ`.
 
 The output of the Matlab conversion utilities was changed
-to use structures. For details, see :ref:`BEHCCEBJ`, :ref:`BEHDIAJG`, and :ref:`BEHCBCGG`.
+to use structures. For details, see :ref:`BEHCCEBJ`, :ref:`BEHDIAJG`,
+and :ref:`convert_to_matlab`.
 
 Matlab tools to import and export w and stc files were added.
 
@@ -107,7 +109,7 @@ The MNE Matlab toolbox is now covered in a separate chapter.
 Change bars are employed to indicate changes in the chapters that
 existed in the previous version of the manual. Note that :ref:`ch_matlab` describing
 the Matlab toolbox is totally new and change bars have not been
-used there. Furthermore, :ref:`BGBDEIGC` now contains all the
+used there. Furthermore, :ref:`setup_martinos` now contains all the
 information specific to the Martinos Center.
 
 mne_browse_raw
@@ -308,7 +310,7 @@ BEM mesh generation
 ===================
 
 All information concerning BEM mesh generation has been moved
-to :ref:`BGBDEIGC`. Utilities for BEM mesh generation using
+to :ref:`create_bem_model`. Utilities for BEM mesh generation using
 FLASH images have been added, see :ref:`BABFCDJH`.
 
 Matlab toolbox
@@ -709,7 +711,7 @@ MNE software and setup for individual users:
 - The setup scripts have changed.
 
 The installation and user-level effects of the new software
-organization are discussed in :ref:`CHDBAFGJ` and :ref:`BGBDEIGC`.
+organization are discussed in :ref:`CHDBAFGJ` and :ref:`setup_martinos`.
 
 In addition, several minor bugs have been fixed in the source
 code. Most relevant changes visible to the user are listed below.
@@ -846,7 +848,7 @@ Miscellaneous
   see :ref:`CBBBBHIF`.
 
 - Added ``--noiserank`` option to mne_inverse_operator and mne_do_inverse_operator ,
-  see :ref:`CBBDDBGF`and :ref:`CIHCFJEI`, respectively.
+  see :ref:`CBBDDBGF` and :ref:`CIHCFJEI`, respectively.
 
 - The fif output from mne_convert_dig_data now
   includes the transformation between the digitizer and MNE head coordinate
diff --git a/doc/source/manual/analyze.rst b/doc/source/manual/analyze.rst
index 95bb94a..eec9196 100755
--- a/doc/source/manual/analyze.rst
+++ b/doc/source/manual/analyze.rst
@@ -379,10 +379,9 @@ The contents of the dipoles menu is shown in :ref:`CACCJDAF`:
 The Help menu
 =============
 
-The contents of the Help menu
-is shown in :ref:`CACGFEAF`:
+The contents of the Help menu is shown in :ref:`help_menu_analyze`:
 
-.. _CACGFEAF:
+.. _help_menu_analyze:
 
 .. figure:: mne_analyze/help_menu.png
     :alt: The Help menu
diff --git a/doc/source/manual/browse.rst b/doc/source/manual/browse.rst
index 37f1e44..8673354 100755
--- a/doc/source/manual/browse.rst
+++ b/doc/source/manual/browse.rst
@@ -995,9 +995,9 @@ The components of the selection creation dialog shown in :ref:`CACFECED` have th
     the channel name list. The name of the selection is specified with
     the Name: text field.
 
-.. _CACHCHDJ:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.45\linewidth}|
+.. _CACHCHDJ:
 .. table:: Examples of regular expressions for channel selections
 
     +--------------------+----------------------------------------------+
@@ -1350,9 +1350,9 @@ The Help menu
 #############
 
 The contents of the Help menu
-is shown in :ref:`CACGFEAF`:
+is shown in :ref:`help_menu_browse`:
 
-.. _CACGFEAF:
+.. _help_menu_browse:
 
 .. figure:: mne_browse_raw/help_menu.png
     :alt: Help menu
diff --git a/doc/source/manual/convert.rst b/doc/source/manual/convert.rst
index e74aa3d..3e1bc44 100755
--- a/doc/source/manual/convert.rst
+++ b/doc/source/manual/convert.rst
@@ -1800,7 +1800,7 @@ The prefix given with the ``--tag`` option is indicated <*tag*> , see :ref:`BEHC
     meas_times           ntime               The time points in seconds.
     ===================  ==================  =============================================================================================================================================================================================================================================================================================================================================================================================================================================================== [...]
 
-.. _BEHCBCGG:
+.. _convert_to_matlab:
 
 Converting raw data to Matlab format
 ####################################
diff --git a/doc/source/manual/cookbook.rst b/doc/source/manual/cookbook.rst
index fa9b341..dbb16e2 100755
--- a/doc/source/manual/cookbook.rst
+++ b/doc/source/manual/cookbook.rst
@@ -250,14 +250,14 @@ of the intracranial volume. For EEG, the standard model contains
 the intracranial space, the skull, and the scalp.
 
 At present, no bulletproof method exists for creating the
-triangulations. Feasible approaches are described in :ref:`BGBDEIGC`.
+triangulations. Feasible approaches are described in :ref:`create_bem_model`.
 
 .. _BABDBBFC:
 
 Setting up the triangulation files
 ==================================
 
-The segmentation algorithms described in :ref:`BGBDEIGC` produce
+The segmentation algorithms described in :ref:`create_bem_model` produce
 either FreeSurfer surfaces or triangulation
 data in text. Before proceeding to the creation of the boundary
 element model, standard files (or symbolic links created with the ``ln -s`` command) have to be present in the subject's ``bem`` directory.
@@ -374,7 +374,7 @@ the following options:
     the process is aborted if it is incorrect after taking into account
     the state of the swapping. Should this happen, try to run mne_setup_forward_model again including
     the ``--noswap`` flag. In particular, if you employ the seglab software
-    to create the triangulations (see :ref:`BGBDEIGC`), the ``--noswap`` flag
+    to create the triangulations (see :ref:`create_bem_model`), the ``--noswap`` flag
     is required. This option is ignored if ``--surf`` is specified
 
 **\---ico <*number*>**
diff --git a/doc/source/manual/forward.rst b/doc/source/manual/forward.rst
index 09cc8be..8f00c5c 100755
--- a/doc/source/manual/forward.rst
+++ b/doc/source/manual/forward.rst
@@ -789,11 +789,20 @@ The columns of the tables contain the following data:
   of the baseline of the gradiometer to show that the output is in
   T/m.
 
-.. note:: The coil geometry information is stored in the    file $MNE_ROOT/share/mne/coil_def.dat, which is automatically created    by the utility mne_list_coil_def , see :ref:`BJEHHJIJ`.
+.. note:: The coil geometry information is stored in the file $MNE_ROOT/share/mne/coil_def.dat, which is automatically created by the utility mne_list_coil_def , see :ref:`BJEHHJIJ`.
 
+.. XXX : table of normal coil description is missing
 
+.. tabularcolumns:: |p{0.1\linewidth}|p{0.3\linewidth}|p{0.1\linewidth}|p{0.25\linewidth}|p{0.2\linewidth}|
+.. _BGBBHGEC:
 .. table:: Normal coil descriptions. Note: If a plus-minus sign occurs in several coordinates, all possible combinations have to be included.
 
+    +------+-------------------------+----+----------------------------------+----------------------+
+    | Id   | Description             | n  | r/mm                             | w                    |
+    +======+=========================+====+==================================+======================+
+    | 2    | XXX                     | X  | XXXX                             | XXXX                 |
+    +------+-------------------------+----+----------------------------------+----------------------+
+
 .. tabularcolumns:: |p{0.1\linewidth}|p{0.3\linewidth}|p{0.1\linewidth}|p{0.25\linewidth}|p{0.2\linewidth}|
 .. _CHDBDFJE:
 .. table:: Accurate coil descriptions
@@ -917,9 +926,9 @@ a description line containing the following fields:
     1000     an EEG electrode (used internally in software only).
     =======  =======================================================
 
-.. _BJEHIBJC:
 
 .. tabularcolumns:: |p{0.1\linewidth}|p{0.5\linewidth}|
+.. _BJEHIBJC:
 .. table:: Coil representation accuracies.
 
     =======  =====================================================================
@@ -1132,7 +1141,7 @@ the following command-line options:
 Implementation of software gradient compensation
 ================================================
 
-As described in :ref:`BEHDDFBI`BEHDEJEC the CTF and 4D Neuroimaging
+As described in :ref:`BEHDDFBI` the CTF and 4D Neuroimaging
 data may have been subjected to noise cancellation employing the
 data from the reference sensor array. Even though these sensor are
 rather far away from the brain sources, mne_forward_solution takes
diff --git a/doc/source/manual/intro.rst b/doc/source/manual/intro.rst
index 46a37b6..c568d25 100755
--- a/doc/source/manual/intro.rst
+++ b/doc/source/manual/intro.rst
@@ -24,14 +24,14 @@ processing of the sample data set included with the MNE software. :ref:`ch_readi
 some useful background material for the methods employed in the
 MNE software.
 
-:ref:`BGBDEIGC` is an overview of the BEM model mesh
-generation methods, :ref:`BGBDEIGC` contains information specific
-to the setup at Martinos Center of Biomedical Imaging, :ref:`BGBDEIGC` is
-a software installation and configuration guide, :ref:`BGBDEIGC` summarizes
-the software history, and :ref:`BGBDEIGC` contains the End-User
+:ref:`create_bem_model` is an overview of the BEM model mesh
+generation methods, :ref:`setup_martinos` contains information specific
+to the setup at Martinos Center of Biomedical Imaging, :ref:`install_config` is
+a software installation and configuration guide, :ref:`release_notes` summarizes
+the software history, and :ref:`licence` contains the End-User
 License Agreement.
 
-.. note:: The most recent version of this manual is available    at ``$MNE_ROOT/share/doc/MNE-manual-`` <*version*> ``.pdf`` . For    the present manual, <*version*> = ``2.7`` .    For definition of the ``MNE_ROOT`` environment variable,    see :ref:`CIHCDHGI`.
+.. note:: The most recent version of this manual is available    at ``$MNE_ROOT/share/doc/MNE-manual-`` <*version*> ``.pdf`` . For    the present manual, <*version*> = ``2.7`` .    For definition of the ``MNE_ROOT`` environment variable,    see :ref:`user_environment`.
 
 We want to thank all MNE Software users at the Martinos Center and
 in other institutions for their collaboration during the creation
diff --git a/doc/source/manual/list.rst b/doc/source/manual/list.rst
index ffbeaab..402e79a 100755
--- a/doc/source/manual/list.rst
+++ b/doc/source/manual/list.rst
@@ -13,9 +13,8 @@ The principal components of the MNE Software and their functions
 are listed in :ref:`CHDDJIDB`. Documented software is listed
 in italics. :ref:`BABDJHGH` lists various supplementary utilities.
 
-.. _CHDDJIDB:
-
 .. tabularcolumns:: |p{0.3\linewidth}|p{0.65\linewidth}|
+.. _CHDDJIDB:
 .. table:: The software components.
 
     +----------------------------+--------------------------------------------+
@@ -92,9 +91,9 @@ in italics. :ref:`BABDJHGH` lists various supplementary utilities.
     |                            | environment of a file.                     |
     +----------------------------+--------------------------------------------+
 
-.. _BABDJHGH:
 
 .. tabularcolumns:: |p{0.3\linewidth}|p{0.65\linewidth}|
+.. _BABDJHGH:
 .. table:: Utility programs.
 
     +---------------------------------+--------------------------------------------+
@@ -265,7 +264,7 @@ in italics. :ref:`BABDJHGH` lists various supplementary utilities.
     | mne_process_stc                 | Manipulate stc files.                      |
     +---------------------------------+--------------------------------------------+
     | *mne_raw2mat*                   | Convert raw data into a Matlab file,       |
-    |                                 | see :ref:`BEHCBCGG`.                       |
+    |                                 | see :ref:`convert_to_matlab`.              |
     +---------------------------------+--------------------------------------------+
     | *mne_rename_channels*           | Change the names and types of channels     |
     |                                 | in a fif file, see :ref:`CHDCFEAJ`.        |
@@ -358,7 +357,7 @@ information:
 
     Prints the program module name, version number, and compilation date.
 
-.. _CIHCDHGI:
+.. _user_environment:
 
 User environment
 ################
@@ -398,7 +397,7 @@ For csh/tcsh the corresponding commands are:
 ``setenv MNE_ROOT`` <*MNE*> ``setenv MATLAB_ROOT`` <*Matlab*> ``source $MNE_ROOT/bin/mne_setup``
 
 For BEM mesh generation using the watershed algorithm or
-on the basis of multi-echo FLASH MRI data (see :ref:`BGBDEIGC`) and
+on the basis of multi-echo FLASH MRI data (see :ref:`create_bem_model`) and
 for accessing the tkmedit program
 from mne_analyze, see :ref:`CACCHCBF`,
 the MNE software needs access to a FreeSurfer license
@@ -409,9 +408,8 @@ as described in the FreeSurfer documentation.
 The environment variables relevant to the MNE software are
 listed in :ref:`CIHDGFAA`.
 
-.. _CIHDGFAA:
-
 .. tabularcolumns:: |p{0.3\linewidth}|p{0.55\linewidth}|
+.. _CIHDGFAA:
 .. table:: Environment variables
 
     +-------------------------+--------------------------------------------+
@@ -435,4 +433,4 @@ listed in :ref:`CIHDGFAA`.
     |                         | values, see :ref:`BABBGJEA`.               |
     +-------------------------+--------------------------------------------+
 
-.. note:: :ref:`BGBDEIGC` contains information specific to the setup at the Martinos Center including instructions to access the Neuromag software.
+.. note:: :ref:`setup_martinos` contains information specific to the setup at the Martinos Center including instructions to access the Neuromag software.
diff --git a/doc/source/manual/matlab.rst b/doc/source/manual/matlab.rst
index a50f159..63bd4bd 100755
--- a/doc/source/manual/matlab.rst
+++ b/doc/source/manual/matlab.rst
@@ -12,9 +12,9 @@ Overview
 The MNE software contains a collection Matlab m-files to
 facilitate interfacing with binary file formats of the MNE software.
 The toolbox is located at ``$MNE_ROOT/share/matlab`` . The
-names of the MNE Matlab toolbox functions begin either with mne_ or
-with fiff_ . When you source the mne_setup script
-as described in :ref:`CIHCDHGI`, one of the following actions
+names of the MNE Matlab toolbox functions begin either with `mne_` or
+with `fiff_` . When you source the mne_setup script
+as described in :ref:`user_environment`, one of the following actions
 takes place:
 
 - If you do not have the Matlab startup.m
@@ -588,9 +588,9 @@ The documented structures are:
     data                named matrix     The compensation data matrix. The row_names list the names of the channels to which this compensation applies and the col_names the compensation channels. For more information, see :ref:`BEHDDFBI`.
     ==================  ===============  ===========================================================================================================================================================================================================
 
-.. _BGBFHDIJ:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.2\linewidth}|p{0.55\linewidth}|
+.. _BGBFHDIJ:
 .. table:: The meas info structure.
 
     =============  ==============  =====================================================================================================================
@@ -613,9 +613,9 @@ The documented structures are:
     comps          comp(*)         Software gradient compensation data.
     =============  ==============  =====================================================================================================================
 
-.. _BGBEFJCB:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.2\linewidth}|p{0.55\linewidth}|
+.. _BGBEFJCB:
 .. table:: The surf structure.
 
     ===============  ==================  ============================================================================================================================================================================================================================================================================
@@ -644,9 +644,9 @@ The documented structures are:
     dist_limit       double              The value given to mne_add_patch_info with the ``--dist`` option, see :ref:`CJAGCDCC`. This value is presently always negative, indicating that only distances between active source space vertices, as indicated by the vertno field of this structure, have been calculated.
     ===============  ==================  ============================================================================================================================================================================================================================================================================
 
-.. _BGBJJIED:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.2\linewidth}|p{0.55\linewidth}|
+.. _BGBJJIED:
 .. table:: The cov structure.
 
     =========  ==================  ======================================================================================================
@@ -664,9 +664,9 @@ The documented structures are:
     eigvec     double(dim,dim)     The eigenvectors of the covariance matrix.
     =========  ==================  ======================================================================================================
 
-.. _BGBFJIBJ:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.2\linewidth}|p{0.55\linewidth}|
+.. _BGBFJIBJ:
 .. table:: The fwd structure.
 
     ==============  ====================  =============================================================================================================================================================================================================================
@@ -684,9 +684,9 @@ The documented structures are:
     source_nn       double(*,3)           The source orientations. Number of rows is either nsource (fixed source orientations) or 3*nsource (all source orientations).
     ==============  ====================  =============================================================================================================================================================================================================================
 
-.. _BGBIEIJE:
 
 .. tabularcolumns:: |p{0.2\linewidth}|p{0.2\linewidth}|p{0.55\linewidth}|
+.. _BGBIEIJE:
 .. table:: The inv structure. Note: The fields proj , whitener , reginv , and noisenorm are filled in by the routine mne_prepare_inverse_operator.
 
     ===============  ======================  ==============================================================================================================================================================
diff --git a/doc/source/manual/mne.rst b/doc/source/manual/mne.rst
index c1237c5..b99d62a 100755
--- a/doc/source/manual/mne.rst
+++ b/doc/source/manual/mne.rst
@@ -1320,4 +1320,4 @@ the sign of the estimates at this vertex are inverted. The inversion
 is reflected in the current direction vector listed in the channel
 information, see above.
 
-.. note:: The raw data files output by mne_compute_raw_inverse can    be converted to mat files with mne_raw2mat ,    see :ref:`BEHCBCGG`. Alternatively, the files can be read    directly from Matlab using the routines in the MNE Matlab toolbox,    see :ref:`ch_matlab`. The evoked data output can be easily read directly    from Matlab using the fiff_load_evoked routine    in the MNE Matlab toolbox. Both raw data and evoked output files    can be loaded into mne_browse_raw ,    see :ref:` [...]
+.. note:: The raw data files output by mne_compute_raw_inverse can be converted to mat files with mne_raw2mat, see :ref:`convert_to_matlab`. Alternatively, the files can be read directly from Matlab using the routines in the MNE Matlab toolbox, see :ref:`ch_matlab`. The evoked data output can be easily read directly from Matlab using the fiff_load_evoked routine in the MNE Matlab toolbox. Both raw data and evoked output files can be loaded into mne_browse_raw, see :ref:`ch_browse`.
diff --git a/doc/source/manual/sampledata.rst b/doc/source/manual/sampledata.rst
index 596d4a1..b747227 100755
--- a/doc/source/manual/sampledata.rst
+++ b/doc/source/manual/sampledata.rst
@@ -15,7 +15,7 @@ the workflow described in :ref:`ch_cookbook`.
 
 .. note:: Going through the analysis exercise in    this chapter is not a substitute for reading other chapters of this    manual and understanding the concepts underlying MNE software.
 
-.. _CIHCDHGI:
+.. _sample_data_overview:
 
 Overview
 ########
@@ -61,7 +61,7 @@ as a compressed tar archive located at ``$MNE_ROOT/sample-data/MNE-sample-data.t
 To make a personal copy of the sample data set, follow these steps:
 
 - Set up for using the MNE software as
-  instructed in :ref:`CIHCDHGI` of this manual.
+  instructed in :ref:`user_environment` of this manual.
 
 - Create a directory for your personal copy: ``mkdir`` <*yourdir*> , where <*yourdir*> is
   the location where you want your personal copy to reside. Tho store
@@ -77,8 +77,7 @@ To make a personal copy of the sample data set, follow these steps:
 
 To start the tutorials you need to:
 
-- Set up MNE software user environment,
-  see :ref:`CIHCDHGI`.
+- Set up MNE software user environment, see :ref:`user_environment`.
 
 - Set the SUBJECTS_DIR environment variable:``setenv SUBJECTS_DIR`` <*yourdir*> ``/subjects`` (csh
   and tcsh) or ``export SUBJECTS_DIR=`` <*yourdir*> ``/subjects`` (POSIX-compatible

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-mne.git

