[med-svn] [gubbins] 05/05: Add autogenerated manpages (need manual editing)

[Andreas Tille]

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tille pushed a commit to branch master
in repository gubbins.

commit 1d9e0372d2bbbaea05025c8d0ddcd17bfc182f93
Author: Andreas Tille <tille at debian.org>
Date:   Mon Nov 30 12:11:10 2015 +0100

    Add autogenerated manpages (need manual editing)
---
 debian/gubbins_drawer.1 | 21 +++++++++++++++++++++
 debian/manpages         |  1 +
 debian/run_gubbins.1    | 19 +++++++++++++++++++
 3 files changed, 41 insertions(+)

diff --git a/debian/gubbins_drawer.1 b/debian/gubbins_drawer.1
new file mode 100644
index 0000000..e7deb45
--- /dev/null
+++ b/debian/gubbins_drawer.1
@@ -0,0 +1,21 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.3.
+.TH GUBBINS_DRAWER "1" "November 2015" "gubbins_drawer 1.4.3" "User Commands"
+.SH NAME
+gubbins_drawer \- draw results for gubbins phylogenetic analysis of genome sequences
+.SH SYNOPSIS
+.B gubbins_drawer
+[\fI\,options\/\fR] \fI\,args\/\fR
+.SH OPTIONS
+.TP
+\fB\-h\fR, \fB\-\-help\fR
+show this help message and exit
+.IP
+Output Options:
+.TP
+\fB\-o\fR FILE, \fB\-\-output\fR=\fI\,FILE\/\fR
+output file name [default= test.pdf]
+.TP
+\fB\-t\fR TREE, \fB\-\-tree\fR=\fI\,TREE\/\fR
+tree file to align tab files to
+.SH AUTHOR
+This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
diff --git a/debian/manpages b/debian/manpages
new file mode 100644
index 0000000..0f65186
--- /dev/null
+++ b/debian/manpages
@@ -0,0 +1 @@
+debian/*.1
diff --git a/debian/run_gubbins.1 b/debian/run_gubbins.1
new file mode 100644
index 0000000..1816ddd
--- /dev/null
+++ b/debian/run_gubbins.1
@@ -0,0 +1,19 @@
+.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.3.
+.TH RUN_GUBBINS "1" "November 2015" "run_gubbins 1.4.3" "User Commands"
+.SH NAME
+run_gubbins \- Phylogenetic analysis of genome sequences
+.SH DESCRIPTION
+usage: run_gubbins [\-h] [\-\-outgroup OUTGROUP] [\-\-starting_tree STARTING_TREE]
+.IP
+[\-\-use_time_stamp] [\-\-verbose] [\-\-no_cleanup]
+[\-\-tree_builder TREE_BUILDER] [\-\-iterations ITERATIONS]
+[\-\-min_snps MIN_SNPS]
+[\-\-filter_percentage FILTER_PERCENTAGE] [\-\-prefix PREFIX]
+[\-\-threads THREADS] [\-\-converge_method CONVERGE_METHOD]
+[\-\-version] [\-\-min_window_size MIN_WINDOW_SIZE]
+[\-\-max_window_size MAX_WINDOW_SIZE]
+alignment_filename
+.PP
+run_gubbins: error: the following arguments are required: alignment_filename
+.SH AUTHOR
+This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

-- 
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