[med-svn] [prottest] branch master updated (46c1ec3 -> 0a2ddd5)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository prottest.

      from  46c1ec3   Add missing license
       new  7b7413d   New upstream version comes without file with no licensing information
      adds  e15ff60   Imported Upstream version 3.4+dfsg
      adds  6e32183   Imported Upstream version 3.4+dfsg
       new  d4f6421   Imported Upstream version 3.4.1+dfsg
       new  7ac092e   Imported Upstream version 3.4.1+dfsg
       new  3ae2f93   Imported Upstream version 3.4.1+dfsg
       new  e7f15a2   Merge tag 'upstream/3.4.1+dfsg'
       new  bb15bac   Refreshed patches
       new  708cef3   Bump version number in manifest and links
       new  0a2ddd5   Add missing dependency

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                          |  49 +++++++++
 buildconf/project.properties                       |   3 +-
 debian/changelog                                   |  12 ++-
 debian/control                                     |   3 +-
 debian/links                                       |   2 +-
 debian/manifest                                    |   2 +-
 debian/patches/build.patch                         |   6 +-
 .../java/es/uvigo/darwin/prottest/ProtTest.java    |   2 +-
 .../global/options/ApplicationOptions.java         |  33 ++++---
 .../java/es/uvigo/darwin/prottest/model/Model.java |   2 +-
 .../darwin/prottest/util/WriterOutputStream.java   |  87 ----------------
 .../argumentparser/ProtTestArgumentParser.java     |   2 +-
 .../prottest/util/factory/ProtTestFactory.java     |   4 +-
 .../prottest/util/logging/ProtTestLogger.java      | 109 ++++++++++++++++++++-
 .../darwin/xprottest/results/ErrorLogView.java     |  61 +++++++++++-
 src/main/resources/CHANGELOG                       |  15 ++-
 src/main/resources/README                          |  16 +--
 src/main/resources/prottest.properties             |   2 +-
 src/main/resources/runProtTestHPC.sh               |   2 +-
 src/main/resources/runXProtTestHPC.sh              |   2 +-
 20 files changed, 279 insertions(+), 135 deletions(-)
 create mode 100644 README.md
 delete mode 100755 src/main/java/es/uvigo/darwin/prottest/util/WriterOutputStream.java

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/prottest.git