[med-svn] [prottest] branch upstream updated (6e32183 -> 3ae2f93)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository prottest.

      from  6e32183   Imported Upstream version 3.4+dfsg
       new  d4f6421   Imported Upstream version 3.4.1+dfsg
       new  7ac092e   Imported Upstream version 3.4.1+dfsg
       new  3ae2f93   Imported Upstream version 3.4.1+dfsg

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                                          |  49 +++++++++
 buildconf/project.properties                       |   3 +-
 .../java/es/uvigo/darwin/prottest/ProtTest.java    |   2 +-
 .../global/options/ApplicationOptions.java         |  33 ++++---
 .../java/es/uvigo/darwin/prottest/model/Model.java |   2 +-
 .../darwin/prottest/util/WriterOutputStream.java   |  87 ----------------
 .../argumentparser/ProtTestArgumentParser.java     |   2 +-
 .../prottest/util/factory/ProtTestFactory.java     |   4 +-
 .../prottest/util/logging/ProtTestLogger.java      | 109 ++++++++++++++++++++-
 .../darwin/xprottest/results/ErrorLogView.java     |  61 +++++++++++-
 src/main/resources/CHANGELOG                       |  15 ++-
 src/main/resources/README                          |  16 +--
 src/main/resources/prottest.properties             |   2 +-
 src/main/resources/runProtTestHPC.sh               |   2 +-
 src/main/resources/runXProtTestHPC.sh              |   2 +-
 15 files changed, 263 insertions(+), 126 deletions(-)
 create mode 100644 README.md
 delete mode 100755 src/main/java/es/uvigo/darwin/prottest/util/WriterOutputStream.java

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/prottest.git