[med-svn] r20374 - trunk/packages/R/r-bioc-genomicalignments/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-10-31 21:51:42 +0000 (Sat, 31 Oct 2015)
New Revision: 20374

Modified:
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control
   trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch
Log:
New version with new (Build-)Depends r-bioc-summarizedexperiment


Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2015-10-31 21:44:39 UTC (rev 20373)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/changelog	2015-10-31 21:51:42 UTC (rev 20374)
@@ -1,3 +1,11 @@
+r-bioc-genomicalignments (1.6.1-1) unstable; urgency=medium
+
+  * New upstream version
+    Closes: #803479
+  * Add new (Build-)Depends: r-bioc-summarizedexperiment
+
+ -- Andreas Tille <tille at debian.org>  Sat, 31 Oct 2015 19:33:11 +0100
+
 r-bioc-genomicalignments (1.4.1-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control	2015-10-31 21:44:39 UTC (rev 20373)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/control	2015-10-31 21:51:42 UTC (rev 20374)
@@ -6,8 +6,8 @@
 Build-Depends: debhelper (>= 9),
                cdbs,
                r-base-dev,
-               r-bioc-rsamtools (>= 1.20.4),
-               r-bioc-biocparallel (>= 1.0.0)
+               r-bioc-rsamtools (>= 1.22.0),
+               r-bioc-summarizedexperiment
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-genomicalignments/trunk/
@@ -18,8 +18,8 @@
 Depends: ${R:Depends},
          ${misc:Depends},
          ${shlibs:Depends},
-         r-bioc-rsamtools (>= 1.20.4),
-         r-bioc-biocparallel (>= 1.0.0)
+         r-bioc-rsamtools (>= 1.22.0),
+         r-bioc-summarizedexperiment
 Recommends: r-bioc-shortread
 Description: BioConductor representation and manipulation of short genomic alignments
  This BioConductor package provides efficient containers for storing and

Modified: trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch	2015-10-31 21:44:39 UTC (rev 20373)
+++ trunk/packages/R/r-bioc-genomicalignments/trunk/debian/watch	2015-10-31 21:51:42 UTC (rev 20374)
@@ -1,3 +1,3 @@
 version=3
-opts=downloadurlmangle=s/\.\./packages\/release\/bioc/ \
+opts=downloadurlmangle=s?^(.*)\.\.?http:$1packages/release/bioc? \
  http://www.bioconductor.org/packages/release/bioc/html/GenomicAlignments.html .*/GenomicAlignments_([\d\.]+)\.tar\.gz