[med-svn] [camitk] 01/01: Imported Upstream version 4.0.0~beta
Gianfranco Costamagna
locutusofborg at moszumanska.debian.org
Tue Apr 19 12:56:09 UTC 2016
This is an automated email from the git hooks/post-receive script.
locutusofborg pushed a commit to branch upstream
in repository camitk.
commit 749838a0c549a237008400da7ed396ca7f5aec29
Author: Gianfranco Costamagna <costamagnagianfranco at yahoo.it>
Date: Mon Apr 18 16:44:47 2016 +0200
Imported Upstream version 4.0.0~beta
---
.directory | 8 -
CMakeLists.txt | 15 +-
CMakeLists.txt.user | 136 +-
COPYRIGHT | 2 +-
imaging/CMakeLists.txt | 2 -
imaging/COPYRIGHT | 2 +-
.../actions/itkfilters/AnisotropicDiffusion.cpp | 10 +-
imaging/actions/itkfilters/AnisotropicDiffusion.h | 6 +-
.../actions/itkfilters/AnisotropicDiffusion.impl | 2 +-
imaging/actions/itkfilters/CMakeLists.txt | 3 +-
imaging/actions/itkfilters/CannyEdgeDetection.cpp | 9 +-
imaging/actions/itkfilters/CannyEdgeDetection.h | 6 +-
imaging/actions/itkfilters/CannyEdgeDetection.impl | 2 +-
imaging/actions/itkfilters/ConnectedComponents.cpp | 9 +-
imaging/actions/itkfilters/ConnectedComponents.h | 6 +-
.../actions/itkfilters/ConnectedComponents.impl | 2 +-
imaging/actions/itkfilters/Derivative.cpp | 11 +-
imaging/actions/itkfilters/Derivative.h | 6 +-
imaging/actions/itkfilters/Derivative.impl | 2 +-
imaging/actions/itkfilters/GaussianFilter.cpp | 41 +-
imaging/actions/itkfilters/GaussianFilter.h | 6 +-
imaging/actions/itkfilters/GaussianFilter.impl | 2 +-
imaging/actions/itkfilters/GradientMagnitude.cpp | 10 +-
imaging/actions/itkfilters/GradientMagnitude.h | 6 +-
imaging/actions/itkfilters/GradientMagnitude.impl | 2 +-
.../GradientMagnitudeRecursiveGaussian.cpp | 10 +-
.../GradientMagnitudeRecursiveGaussian.h | 5 +-
.../GradientMagnitudeRecursiveGaussian.impl | 2 +-
imaging/actions/itkfilters/ITKFilterAPI.h | 9 +
imaging/actions/itkfilters/ITKFiltersExtension.cpp | 5 +-
imaging/actions/itkfilters/ITKFiltersExtension.h | 9 +-
imaging/actions/itkfilters/Laplacian.cpp | 10 +-
imaging/actions/itkfilters/Laplacian.h | 6 +-
imaging/actions/itkfilters/Laplacian.impl | 2 +-
.../itkfilters/LaplacianRecursiveGaussian.cpp | 10 +-
.../itkfilters/LaplacianRecursiveGaussian.h | 6 +-
.../itkfilters/LaplacianRecursiveGaussian.impl | 2 +-
imaging/actions/itkfilters/LaplacianSharpening.cpp | 10 +-
imaging/actions/itkfilters/LaplacianSharpening.h | 6 +-
.../actions/itkfilters/LaplacianSharpening.impl | 2 +-
imaging/actions/itkfilters/MeanFilter.cpp | 10 +-
imaging/actions/itkfilters/MeanFilter.h | 6 +-
imaging/actions/itkfilters/MeanFilter.impl | 2 +-
imaging/actions/itkfilters/MedianFilter.cpp | 10 +-
imaging/actions/itkfilters/MedianFilter.h | 6 +-
imaging/actions/itkfilters/MedianFilter.impl | 2 +-
.../actions/itkfilters/MorphologicalOperators.cpp | 85 +-
.../actions/itkfilters/MorphologicalOperators.h | 6 +-
.../actions/itkfilters/MorphologicalOperators.impl | 2 +-
imaging/actions/itkfilters/SobelEdgeDetection.cpp | 10 +-
imaging/actions/itkfilters/SobelEdgeDetection.h | 6 +-
imaging/actions/itkfilters/SobelEdgeDetection.impl | 2 +-
.../itkfilters/resources/translate/translate_en.ts | 10 +
.../itkfilters/resources/translate/translate_fr.ts | 12 +-
imaging/actions/itksegmentation/CMakeLists.txt | 2 +-
.../itksegmentation/ITKSegmentationExtension.cpp | 5 +-
.../itksegmentation/ITKSegmentationExtension.h | 5 +-
.../actions/itksegmentation/ManualThreshold.cpp | 16 +-
imaging/actions/itksegmentation/ManualThreshold.h | 2 +-
.../actions/itksegmentation/ManualThreshold.impl | 2 +-
imaging/actions/itksegmentation/OtsuFilter.cpp | 194 +-
imaging/actions/itksegmentation/OtsuFilter.h | 2 +-
imaging/actions/itksegmentation/OtsuFilter.impl | 2 +-
imaging/actions/itksegmentation/RegionGrowing.cpp | 12 +-
imaging/actions/itksegmentation/RegionGrowing.h | 2 +-
imaging/actions/itksegmentation/RegionGrowing.impl | 2 +-
.../itksegmentation/RegionGrowingWidget.cpp | 3 +-
.../actions/itksegmentation/RegionGrowingWidget.h | 2 +-
.../resources/translate/translate_en.ts | 14 +-
.../resources/translate/translate_fr.ts | 16 +-
imaging/components/dicom/CMakeLists.txt | 1 +
imaging/components/dicom/DicomComponent.cpp | 107 +-
imaging/components/dicom/DicomComponent.h | 23 +-
.../components/dicom/DicomComponentExtension.cpp | 8 +-
imaging/components/dicom/DicomComponentExtension.h | 11 +-
imaging/components/dicom/DicomDialog.cpp | 2 +-
imaging/components/dicom/DicomDialog.h | 4 +-
imaging/components/dicom/DicomDialogEntry.cpp | 2 +-
imaging/components/dicom/DicomDialogEntry.h | 4 +-
imaging/components/dicom/DicomParser.cpp | 82 +-
imaging/components/dicom/DicomParser.h | 15 +-
imaging/components/dicom/DicomSerie.cpp | 2 +-
imaging/components/dicom/DicomSerie.h | 9 +-
imaging/components/dicomitk/DicomItkComponent.cpp | 2 +-
imaging/components/dicomitk/DicomItkComponent.h | 3 +-
.../dicomitk/DicomItkComponentExtension.cpp | 2 +-
.../dicomitk/DicomItkComponentExtension.h | 3 +-
.../dicomtree/DicomTreeComponentExtension.cpp | 2 +-
.../dicomtree/DicomTreeComponentExtension.h | 3 +-
.../dicomtree/DicomTreeDirectoryComponent.cpp | 2 +-
.../dicomtree/DicomTreeDirectoryComponent.h | 3 +-
.../dicomtree/DicomTreeSerieComponent.cpp | 2 +-
.../components/dicomtree/DicomTreeSerieComponent.h | 3 +-
.../dicomtree/DicomTreeStudyComponent.cpp | 2 +-
.../components/dicomtree/DicomTreeStudyComponent.h | 3 +-
imaging/components/itkimage/ItkImageComponent.cpp | 3 +-
imaging/components/itkimage/ItkImageComponent.h | 2 +-
.../itkimage/ItkImageComponentExtension.cpp | 6 +-
.../itkimage/ItkImageComponentExtension.h | 7 +-
imaging/doc/groups.h | 15 +-
modeling/CMakeLists.txt | 15 +-
modeling/COPYRIGHT | 2 +-
modeling/SofaLegacySupport.cmake | 204 +
modeling/SofaSupport.cmake | 168 +
modeling/actions/mml/CMakeLists.txt | 6 +-
modeling/actions/mml/CreateSC.cpp | 177 -
modeling/actions/mml/CreateSC.h | 56 -
modeling/actions/mml/GenerateModel.cpp | 64 +-
modeling/actions/mml/GenerateModel.h | 2 +-
modeling/actions/mml/MMLActionExtension.cpp | 8 +-
modeling/actions/mml/MMLActionExtension.h | 9 +-
modeling/actions/mml/SimulationDialog.cpp | 55 +
modeling/actions/mml/SimulationDialog.h | 43 +
modeling/actions/pml/AddNewPropertyWidget.ui | 112 +
modeling/actions/pml/CMakeLists.txt | 9 +
modeling/actions/pml/CamiTKPropertyList.cpp | 60 +
modeling/actions/pml/CamiTKPropertyList.h | 72 +
modeling/actions/pml/CreateSC.cpp | 321 +
modeling/actions/pml/CreateSC.h | 81 +
modeling/actions/pml/PMLActionExtension.cpp | 38 +
modeling/actions/pml/PMLActionExtension.h | 60 +
modeling/actions/pml/PMLExplorerAction.cpp | 87 +
modeling/actions/pml/PMLExplorerAction.h | 68 +
modeling/actions/pml/PMLExplorerWidget.cpp | 644 +
modeling/actions/pml/PMLExplorerWidget.h | 203 +
modeling/actions/pml/PmlExplorerWidget.ui | 157 +
modeling/actions/pml/resources/PMLExploreIcons.qrc | 8 +
modeling/actions/pml/resources/atom_20x20.xpm | 166 +
modeling/actions/pml/resources/cell_20x20.xpm | 262 +
.../actions/pml/resources/multicomponent_20x20.xpm | 183 +
.../pml/resources/structuralcomponent_20x20.xpm | 316 +
.../pml/resources/translate/translate_en.ts | 63 +
.../pml/resources/translate/translate_fr.ts | 63 +
modeling/actions/simulationtabs/SimulationTabs.cpp | 52 -
modeling/actions/simulationtabs/SimulationTabs.h | 38 -
.../simulationtabs/SimulationTabsExtension.cpp | 16 -
.../simulationtabs/SimulationTabsExtension.h | 36 -
modeling/applications/CMakeLists.txt | 12 +
modeling/applications/lmltest/CMakeLists.txt | 36 +
.../lml/test => applications/lmltest}/cube.lml | 0
.../lmltest}/direction-toward.lml | 0
modeling/applications/lmltest/lmltest.cpp | 275 +
.../test => applications/lmltest}/load-sample1.lml | 0
.../test => applications/lmltest}/load-sample2.lml | 0
.../test => applications/lmltest}/named-target.lml | 0
.../lmltest}/null-direction.lml | 0
.../lml/test => applications/lmltest}/test.lml | 0
modeling/applications/mml/CMakeLists.txt | 77 +
modeling/applications/mml/benchmark/CMakeLists.txt | 31 +
modeling/applications/mml/benchmark/benchmark.cpp | 58 +
.../applications/mml/benchmarkgui/CMakeLists.txt | 35 +
.../applications/mml/benchmarkgui/benchmarkgui.cpp | 37 +
.../resources/translate/translate_en.ts | 284 +
.../resources/translate/translate_fr.ts | 284 +
.../applications/mml/paramExplorer/CMakeLists.txt | 34 +
.../mml/paramExplorer/paramExplorer.cpp | 135 +
.../applications/mml/pml2mmlOut/CMakeLists.txt | 34 +
.../applications/mml/pml2mmlOut/pml2mmlOut.cpp | 90 +
modeling/applications/mml/scn2pml/CMakeLists.txt | 33 +
modeling/applications/mml/scn2pml/scn2pml.cpp | 63 +
modeling/applications/pmltest/CMakeLists.txt | 72 +
modeling/applications/pmltest/cube1.pml | 80 +
modeling/applications/pmltest/cube2.pml | 394 +
modeling/applications/pmltest/cube3.pml | 133 +
modeling/applications/pmltest/cube4.pml | 82 +
.../pmltest/customProperty-example.pml | 60 +
modeling/applications/pmltest/diaph.pml | 7237 +++
modeling/applications/pmltest/human-trunk.pml | 5243 ++
modeling/applications/pmltest/icosahedron.pml | 347 +
modeling/applications/pmltest/pmltest.cpp | 129 +
modeling/applications/pmltest/visage.pml | 49201 +++++++++++++++++++
modeling/applications/pmltools/CMakeLists.txt | 67 +
.../pmltools}/ansys2pml/CMakeLists.txt | 0
.../applications/pmltools/ansys2pml/ansys2pml.cpp | 380 +
.../applications/pmltools/ansys2pml/programarg.h | 99 +
.../pmltools}/bash-scripts/README | 0
.../pmltools}/bash-scripts/all-on-one-line.sed | 0
.../pmltools}/bash-scripts/ansysComponent2csv.bash | 0
.../pmltools}/bash-scripts/atomscsv2atomspml.bash | 0
.../pmltools}/bash-scripts/atomspml2atomscsv.bash | 0
.../pmltools}/bash-scripts/cutInBits.bash | 0
.../pmltools}/bash-scripts/extractSC.bash | 0
.../pmltools}/bash-scripts/incr_num.sed | 0
.../pmltools}/bash-scripts/node2cell.bash | 0
.../pmltools}/bash-scripts/removeCellIndex.bash | 0
.../elementsToNeighborhood/CMakeLists.txt | 0
.../elementsToNeighborhood.cpp | 700 +
.../pmltools}/elementsToNeighborhood/mef.pml | 0
.../pmltools}/extractCells/CMakeLists.txt | 0
.../pmltools/extractCells/extractCells.cpp | 193 +
.../pmltools}/genatoms/CMakeLists.txt | 0
.../applications/pmltools/genatoms/genatoms.cpp | 137 +
.../pmltools}/gencells/CMakeLists.txt | 0
.../applications/pmltools/gencells/gencells.cpp | 131 +
.../pmltools}/gensphere/CMakeLists.txt | 0
.../applications/pmltools/gensphere/gensphere.cpp | 323 +
.../pmltools}/insideout/CMakeLists.txt | 0
.../applications/pmltools/insideout/insideout.cpp | 123 +
.../pmltools}/mooreNeighborhood/CMakeLists.txt | 0
.../mooreNeighborhood/mooreNeighborhood.cpp | 174 +
.../pmltools}/nobox2pml/CMakeLists.txt | 0
.../applications/pmltools/nobox2pml/nobox2pml.cpp | 366 +
.../pmltools}/obj2pml/CMakeLists.txt | 0
modeling/applications/pmltools/obj2pml/obj2pml.cpp | 274 +
.../pmltools}/obj2pml/truth_cube.obj | 0
.../pmltools}/optimizeMesh/CMakeLists.txt | 0
.../pmltools/optimizeMesh/optimizeMesh.cpp | 381 +
.../pmltools}/pml2ansys/CMakeLists.txt | 0
.../applications/pmltools/pml2ansys/pml2ansys.cpp | 212 +
.../pmltools}/pml2csv/CMakeLists.txt | 0
modeling/applications/pmltools/pml2csv/pml2csv.cpp | 231 +
.../pmltools}/pml2ghs3d/CMakeLists.txt | 0
.../applications/pmltools/pml2ghs3d/pml2ghs3d.cpp | 217 +
.../pmltools}/pml2wrl/CMakeLists.txt | 0
modeling/applications/pmltools/pml2wrl/pml2wrl.cpp | 328 +
.../pmltools}/pmldiff/CMakeLists.txt | 0
modeling/applications/pmltools/pmldiff/pmldiff.cpp | 190 +
.../pmltools}/refineMesh/CMakeLists.txt | 0
.../pmltools/refineMesh/refineMesh.cpp | 552 +
.../pmltools}/renError/CMakeLists.txt | 0
.../applications/pmltools/renError/renError.cpp | 255 +
.../pmltools}/select/CMakeLists.txt | 0
modeling/applications/pmltools/select/select.cpp | 314 +
.../pmltools}/tri2pml/CMakeLists.txt | 0
modeling/applications/pmltools/tri2pml/tri2pml.cpp | 390 +
.../pmltools}/triangulate/CMakeLists.txt | 0
.../pmltools/triangulate/triangulate.cpp | 143 +
.../pmltools}/vtk2model/CMakeLists.txt | 0
.../applications/pmltools/vtk2model/vtk2model.cpp | 1253 +
.../pmltools}/vtk2pml/CMakeLists.txt | 0
modeling/applications/pmltools/vtk2pml/vtk2pml.cpp | 237 +
modeling/components/CMakeLists.txt | 2 +-
modeling/components/MonitoringDialog.ui | 744 -
modeling/components/mmlcomponent/CMakeLists.txt | 18 +-
modeling/components/mmlcomponent/MMLComponent.cpp | 141 +-
modeling/components/mmlcomponent/MMLComponent.h | 41 +-
modeling/components/mmlcomponent/MMLComponentAPI.h | 2 +-
.../mmlcomponent/MMLComponentExtension.cpp | 5 +-
.../mmlcomponent/MMLComponentExtension.h | 7 +-
.../components/mmlcomponent/MMLComponentPopup.cpp | 50 -
.../components/mmlcomponent/MMLComponentPopup.h | 60 -
modeling/components/mmlcomponent/MMLDisplay.cpp | 44 +-
modeling/components/mmlcomponent/MMLDisplay.h | 2 +-
.../components/mmlcomponent/MMLMonitorDisplay.cpp | 2 +-
.../components/mmlcomponent/MMLMonitorDisplay.h | 4 +-
.../mmlcomponent/MMLMonitorDisplayFactory.cpp | 2 +-
.../mmlcomponent/MMLMonitorDisplayFactory.h | 2 +-
.../mmlcomponent/MMLMonitorDisplays/Arrows.cpp | 64 +-
.../mmlcomponent/MMLMonitorDisplays/Arrows.h | 2 +-
.../mmlcomponent/MMLMonitorDisplays/Colors.cpp | 96 +-
.../mmlcomponent/MMLMonitorDisplays/Colors.h | 2 +-
.../mmlcomponent/MMLMonitorDisplays/Statistics.cpp | 4 +-
.../mmlcomponent/MMLMonitorDisplays/Statistics.h | 3 +-
.../mmlcomponent/MMLMonitorDisplays/Tabular.cpp | 5 +-
.../mmlcomponent/MMLMonitorDisplays/Tabular.h | 3 +-
.../mmlcomponent/testdata/TruthCube-0-HexaFEM.pml | 21598 ++++++++
.../testdata/TruthCube-18-reference.mmlin | 16 +
.../mmlcomponent/testdata/TruthCube-Ansys.mml | 26 +
.../mmlcomponent/testdata/TruthCube-ArtiSynth.mml | 26 +
.../mmlcomponent/testdata/TruthCube-Sofa.mml | 53 +
.../mmlcomponent/testdata/compression-18.lml | 25 +
modeling/components/physicalmodel/AtomDC.cpp | 5 +-
modeling/components/physicalmodel/AtomDC.h | 4 +-
modeling/components/physicalmodel/AtomDCPopup.cpp | 2 +-
modeling/components/physicalmodel/AtomDCPopup.h | 2 +-
.../components/physicalmodel/AtomDCProperties.cpp | 2 +-
.../components/physicalmodel/AtomDCProperties.h | 2 +-
modeling/components/physicalmodel/AtomDCWidget.cpp | 2 +-
modeling/components/physicalmodel/AtomDCWidget.h | 2 +-
modeling/components/physicalmodel/CMakeLists.txt | 4 +-
modeling/components/physicalmodel/CellDC.cpp | 2 +-
modeling/components/physicalmodel/CellDC.h | 2 +-
.../components/physicalmodel/CellDCProperties.cpp | 2 +-
.../components/physicalmodel/CellDCProperties.h | 2 +-
modeling/components/physicalmodel/ComponentDC.cpp | 2 +-
modeling/components/physicalmodel/ComponentDC.h | 2 +-
.../components/physicalmodel/MultiComponentDC.cpp | 2 +-
.../components/physicalmodel/MultiComponentDC.h | 2 +-
.../physicalmodel/MultiComponentDCPopup.cpp | 2 +-
.../physicalmodel/MultiComponentDCPopup.h | 2 +-
modeling/components/physicalmodel/PMComponentAPI.h | 2 +-
.../physicalmodel/PMComponentExtension.cpp | 2 +-
.../physicalmodel/PMComponentExtension.h | 2 +-
modeling/components/physicalmodel/PMManagerDC.cpp | 2 +-
modeling/components/physicalmodel/PMManagerDC.h | 2 +-
.../components/physicalmodel/PMManagerDCPopup.cpp | 2 +-
.../components/physicalmodel/PMManagerDCPopup.h | 2 +-
.../physicalmodel/StructuralComponentDC.cpp | 2 +-
.../physicalmodel/StructuralComponentDC.h | 2 +-
.../physicalmodel/StructuralComponentDCPopup.cpp | 2 +-
.../physicalmodel/StructuralComponentDCPopup.h | 2 +-
.../StructuralComponentDCProperties.cpp | 2 +-
.../StructuralComponentDCProperties.h | 2 +-
.../physicalmodel/loads/AnimationMotorAddon.cpp | 2 +-
.../physicalmodel/loads/AnimationMotorAddon.h | 2 +-
.../physicalmodel/loads/AnyDecoration.cpp | 2 +-
.../components/physicalmodel/loads/AnyDecoration.h | 2 +-
.../physicalmodel/loads/AtomDecoration.cpp | 2 +-
.../physicalmodel/loads/AtomDecoration.h | 2 +-
.../components/physicalmodel/loads/Decoration.h | 2 +-
.../physicalmodel/loads/LoadsAppliedTo.cpp | 2 +-
.../physicalmodel/loads/LoadsAppliedTo.h | 2 +-
.../components/physicalmodel/loads/LoadsEditor.cpp | 2 +-
.../components/physicalmodel/loads/LoadsEditor.h | 2 +-
.../physicalmodel/loads/LoadsManager.cpp | 11 +-
.../components/physicalmodel/loads/LoadsManager.h | 2 +-
.../components/physicalmodel/loads/LoadsMovie.cpp | 2 +-
.../components/physicalmodel/loads/LoadsMovie.h | 2 +-
.../physicalmodel/loads/LoadsSimulation.cpp | 2 +-
.../physicalmodel/loads/LoadsSimulation.h | 2 +-
.../physicalmodel/loads/LoadsSimulationDriver.cpp | 2 +-
.../physicalmodel/loads/LoadsSimulationDriver.h | 2 +-
.../physicalmodel/loads/LoadsValueEvent.cpp | 2 +-
.../physicalmodel/loads/LoadsValueEvent.h | 2 +-
.../resources/translate/translate_en.ts | 2 +-
.../resources/translate/translate_fr.ts | 2 +-
.../physicalmodel/testdata/ctestdata/diaphragm.pml | 10648 ++--
.../physicalmodel/testdata/ctestdata/truthcube.pml | 45179 +++++++++--------
.../physicalmodel/testdata/diaphragm.pml | 10648 ++--
.../physicalmodel/testdata/truthcube.pml | 45179 +++++++++--------
modeling/components/pmlcomponent/CMakeLists.txt | 10 +
modeling/components/pmlcomponent/PMLComponent.cpp | 578 +
modeling/components/pmlcomponent/PMLComponent.h | 283 +
modeling/components/pmlcomponent/PMLComponentAPI.h | 15 +
.../pmlcomponent/PMLComponentExtension.cpp | 202 +
.../pmlcomponent/PMLComponentExtension.h | 71 +
.../pmlcomponent/physicalmodel_20x20.xpm | 211 +
.../pmlcomponent/testdata/compression-12.lml | 44 +
.../pmlcomponent/testdata/ctestdata/diaphragm.pml | 7345 +++
.../pmlcomponent/testdata/ctestdata/truthcube.pml | 24822 ++++++++++
.../components/pmlcomponent/testdata/diaphragm.pml | 7345 +++
.../components/pmlcomponent/testdata/truthcube.pml | 24822 ++++++++++
modeling/libraries/CMakeLists.txt | 4 +-
modeling/libraries/lml/Acceleration.h | 2 +-
modeling/libraries/lml/AccelerationUnit.cpp | 2 +-
modeling/libraries/lml/AccelerationUnit.h | 2 +-
modeling/libraries/lml/CMakeLists.txt | 18 +-
modeling/libraries/lml/COPYING | 340 -
modeling/libraries/lml/Direction.h | 4 +-
modeling/libraries/lml/Force.cpp | 2 +-
modeling/libraries/lml/Force.h | 2 +-
modeling/libraries/lml/ForceUnit.cpp | 2 +-
modeling/libraries/lml/ForceUnit.h | 2 +-
modeling/libraries/lml/INSTALL | 15 -
modeling/libraries/lml/Load.cpp | 2 +-
modeling/libraries/lml/Load.h | 4 +-
modeling/libraries/lml/Loads.cpp | 155 +-
modeling/libraries/lml/Loads.h | 9 +-
modeling/libraries/lml/LoadsVersion.h.in | 2 +-
modeling/libraries/lml/Pressure.h | 2 +-
modeling/libraries/lml/PressureUnit.cpp | 2 +-
modeling/libraries/lml/PressureUnit.h | 2 +-
modeling/libraries/lml/Rotation.h | 2 +-
modeling/libraries/lml/RotationUnit.cpp | 2 +-
modeling/libraries/lml/RotationUnit.h | 2 +-
modeling/libraries/lml/TargetList.cpp | 2 +-
modeling/libraries/lml/TargetList.h | 4 +-
modeling/libraries/lml/Translation.cpp | 2 +-
modeling/libraries/lml/Translation.h | 2 +-
modeling/libraries/lml/TranslationUnit.cpp | 2 +-
modeling/libraries/lml/TranslationUnit.h | 2 +-
modeling/libraries/lml/Unit.h | 4 +-
modeling/libraries/lml/ValueEvent.cpp | 2 +-
modeling/libraries/lml/ValueEvent.h | 4 +-
modeling/libraries/lml/XMLLoads.cpp | 312 -
modeling/libraries/lml/XMLLoads.h | 135 -
modeling/libraries/lml/api-doc/CompileLatex.pl | 2 +-
.../libraries/lml/schema/physicalModelLoad.xsd | 166 -
modeling/libraries/lml/test/CMakeLists.txt | 26 -
modeling/libraries/lml/test/lmltest.cpp | 275 -
modeling/libraries/lmlschema/Acceleration.xsd | 47 +
modeling/libraries/lmlschema/AppliedTo.xsd | 42 +
modeling/libraries/lmlschema/CMakeLists.txt | 33 +
modeling/libraries/lmlschema/DirState.xsd | 47 +
modeling/libraries/lmlschema/Direction.xsd | 54 +
modeling/libraries/lmlschema/Force.xsd | 47 +
modeling/libraries/lmlschema/Load.xsd | 46 +
modeling/libraries/lmlschema/Loads.xsd | 49 +
modeling/libraries/lmlschema/Pressure.xsd | 47 +
modeling/libraries/lmlschema/Rotation.xsd | 48 +
modeling/libraries/lmlschema/Transition.xsd | 42 +
modeling/libraries/lmlschema/Translation.xsd | 47 +
modeling/libraries/lmlschema/Units.xsd | 72 +
modeling/libraries/lmlschema/ValueEvent.xsd | 46 +
modeling/libraries/mml/CMakeLists.txt | 25 +-
modeling/libraries/mml/applications/CMakeLists.txt | 42 -
.../mml/applications/benchmark/CMakeLists.txt | 47 -
.../mml/applications/benchmark/benchmark.cpp | 59 -
.../mml/applications/gui/BenchmarkGui.cpp | 39 -
.../libraries/mml/applications/gui/CMakeLists.txt | 101 -
.../mml/applications/gui/MMLMonitoringGUIAPI.h | 48 -
.../mml/applications/gui/MonitoringDialog.cpp | 350 -
.../mml/applications/gui/MonitoringDialog.h | 128 -
.../mml/applications/gui/MonitoringDialog.ui | 744 -
.../mml/applications/gui/MonitoringDriver.cpp | 82 -
.../mml/applications/gui/MonitoringDriver.h | 85 -
.../mml/applications/gui/MonitoringGuiManager.cpp | 236 -
.../mml/applications/gui/MonitoringGuiManager.h | 120 -
.../gui/resources/translate/translate_en.ts | 284 -
.../gui/resources/translate/translate_fr.ts | 284 -
.../mml/applications/paramExplorer/CMakeLists.txt | 36 -
.../applications/paramExplorer/paramExplorer.cpp | 135 -
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sdk/libraries/core/utils/ConsoleStream.h | 2 +-
sdk/libraries/core/utils/Log.cpp | 2 +-
sdk/libraries/core/utils/Log.h | 2 +-
sdk/libraries/core/utils/ObjectController.cpp | 19 +-
sdk/libraries/core/utils/ObjectController.h | 7 +-
sdk/libraries/core/utils/PlaneC.cpp | 2 +-
sdk/libraries/core/utils/PlaneC.h | 2 +-
sdk/libraries/core/utils/Property.cpp | 2 +-
sdk/libraries/core/utils/Property.h | 74 +-
sdk/libraries/core/utils/PropertyObject.cpp | 63 +
sdk/libraries/core/utils/PropertyObject.h | 103 +
sdk/libraries/core/utils/SliderSpinBoxWidget.cpp | 2 +-
sdk/libraries/core/utils/SliderSpinBoxWidget.h | 2 +-
sdk/libraries/core/utils/SliderTextWidget.cpp | 4 +-
sdk/libraries/core/utils/SliderTextWidget.h | 4 +-
sdk/libraries/core/viewer/.directory | 4 +
sdk/libraries/core/viewer/ActionViewer.cpp | 16 +-
sdk/libraries/core/viewer/ActionViewer.h | 2 +-
sdk/libraries/core/viewer/Explorer.cpp | 4 +-
sdk/libraries/core/viewer/Explorer.h | 2 +-
sdk/libraries/core/viewer/FrameExplorer.cpp | 4 +-
sdk/libraries/core/viewer/FrameExplorer.h | 2 +-
sdk/libraries/core/viewer/InteractiveViewer.cpp | 453 +-
sdk/libraries/core/viewer/InteractiveViewer.h | 133 +-
sdk/libraries/core/viewer/MedicalImageViewer.cpp | 9 +-
sdk/libraries/core/viewer/MedicalImageViewer.h | 2 +-
sdk/libraries/core/viewer/PropertyExplorer.cpp | 76 +-
sdk/libraries/core/viewer/PropertyExplorer.h | 42 +-
sdk/libraries/core/viewer/RendererWidget.cpp | 67 +-
sdk/libraries/core/viewer/RendererWidget.h | 60 +-
sdk/libraries/core/viewer/Viewer.cpp | 2 +-
sdk/libraries/core/viewer/Viewer.h | 2 +-
sdk/libraries/coreschema/Action.xsd | 20 -
sdk/libraries/coreschema/ActionProperties.xsd | 9 -
sdk/libraries/coreschema/Actions.xsd | 8 -
sdk/libraries/coreschema/CMakeLists.txt | 45 -
sdk/libraries/coreschema/ClassNames.xsd | 11 -
sdk/libraries/coreschema/Classification.xsd | 12 -
sdk/libraries/coreschema/Component.xsd | 19 -
sdk/libraries/coreschema/ComponentExtension.xsd | 6 -
sdk/libraries/coreschema/ComponentFile.xsd | 10 -
sdk/libraries/coreschema/Components.xsd | 12 -
sdk/libraries/coreschema/Extension.xsd | 24 -
sdk/libraries/coreschema/ExtensionType.xsd | 11 -
sdk/libraries/coreschema/External.xsd | 9 -
sdk/libraries/coreschema/ExternalType.xsd | 10 -
sdk/libraries/coreschema/ITKOutputType.xsd | 16 -
sdk/libraries/coreschema/ItkFilter.xsd | 7 -
sdk/libraries/coreschema/Parameter.xsd | 11 -
sdk/libraries/coreschema/ParameterType.xsd | 23 -
sdk/libraries/coreschema/Parameters.xsd | 10 -
sdk/libraries/coreschema/Representation.xsd | 10 -
sdk/libraries/qtpropertybrowser/CMakeLists.txt | 106 +-
.../src/qtbuttonpropertybrowser.cpp | 14 +-
.../qtpropertybrowser/src/qteditorfactory.cpp | 38 +-
.../src/qtgroupboxpropertybrowser.cpp | 12 +-
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.../qtpropertybrowser/src/qtpropertybrowser.h | 6 +-
.../src/qtpropertybrowserutils.cpp | 77 +-
.../src/qtpropertybrowserutils_p.h | 8 +-
.../qtpropertybrowser/src/qtpropertymanager.cpp | 32 +-
.../src/qttreepropertybrowser.cpp | 34 +-
.../qtpropertybrowser/src/qtvariantproperty.cpp | 186 +-
sdk/testapplications/testactions/CMakeLists.txt | 1 -
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sdk/testapplications/testactions/main.cpp | 151 +
sdk/testapplications/testcomponents/CMakeLists.txt | 1 -
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sdk/testapplications/testcomponents/main.cpp | 155 +
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diff --git a/.directory b/.directory
deleted file mode 100644
index 56fb632..0000000
--- a/.directory
+++ /dev/null
@@ -1,8 +0,0 @@
-[Dolphin]
-PreviewsShown=true
-Timestamp=2014,10,27,11,51,13
-Version=3
-ViewMode=2
-
-[Settings]
-HiddenFilesShown=true
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 4eee8ca..edab073 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -3,7 +3,7 @@
# CamiTK Open Source CEP Set
#
#--------------------------------------------
-cmake_minimum_required(VERSION 2.6)
+cmake_minimum_required(VERSION 3.0)
project(camitkopensource)
@@ -13,9 +13,9 @@ enable_testing()
# Specific to SDK: control the version (major, minor, default patch and )
set(CAMITK_PROJECT_NAME "CamiTK")
-set(CAMITK_VERSION_MAJOR "3")
-set(CAMITK_VERSION_MINOR "4")
-set(CAMITK_VER_NICKNAME "iris") # blue, sapphire, azure, *indigo*, iris, Teal, cyan, turquoise, denim, celeste, zaffre, glaucous, ultramarine, cerulean
+set(CAMITK_VERSION_MAJOR "4")
+set(CAMITK_VERSION_MINOR "0")
+set(CAMITK_VER_NICKNAME "red") # Red Amaranth American rose Auburn Burgundy Cardinal Carmine Carnelian Cerise Coquelicot
set(CAMITK_VERSION_PATCH "0") # patch version for packaging, change when appropriate
string(TOLOWER "${CAMITK_PROJECT_NAME}-${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}" CAMITK_SHORT_VERSION_STRING)
@@ -30,9 +30,12 @@ set(CAMITK_EXTENSION_PROJECT_SET_NAME "camitk-opensource" CACHE STRING "CEP Set
# Must be done before parsing extensions CMakeLists.txt files.
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR}/sdk/cmake/modules/macros)
set(CAMITK_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR})
-include(CamiTKOpenSourcePackaging)
+include(camitk/packaging/CamiTKOpenSourcePackaging)
camitk_opensource_packaging()
+# CamiTK 4.0 is C++11 compliant
+set(CMAKE_CXX_FLAGS "-std=c++11")
+
# Specific to SDK: first compile the SDK (it looks like a CEP but is sooooo special...)
add_subdirectory(sdk)
@@ -48,6 +51,4 @@ if(CAMITK_BINDING_PYTHON)
add_subdirectory(python_sdk)
endif()
-
-
camitk_sub_project_validate(CEP_SET)
diff --git a/CMakeLists.txt.user b/CMakeLists.txt.user
index c87f4e3..86375aa 100644
--- a/CMakeLists.txt.user
+++ b/CMakeLists.txt.user
@@ -1,10 +1,10 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE QtCreatorProject>
-<!-- Written by QtCreator 3.2.1, 2014-10-27T10:07:32. -->
+<!-- Written by QtCreator 3.5.0, 2016-03-29T17:43:42. -->
<qtcreator>
<data>
<variable>EnvironmentId</variable>
- <value type="QByteArray">{bc210fa6-8dc9-45bc-bd1c-9c68922c2428}</value>
+ <value type="QByteArray">{720cd353-e51b-4c23-8668-813b6a77a15c}</value>
</data>
<data>
<variable>ProjectExplorer.Project.ActiveTarget</variable>
@@ -39,7 +39,7 @@
<value type="int" key="EditorConfiguration.PaddingMode">1</value>
<value type="bool" key="EditorConfiguration.ScrollWheelZooming">true</value>
<value type="bool" key="EditorConfiguration.ShowMargin">false</value>
- <value type="int" key="EditorConfiguration.SmartBackspaceBehavior">1</value>
+ <value type="int" key="EditorConfiguration.SmartBackspaceBehavior">0</value>
<value type="bool" key="EditorConfiguration.SpacesForTabs">true</value>
<value type="int" key="EditorConfiguration.TabKeyBehavior">0</value>
<value type="int" key="EditorConfiguration.TabSize">8</value>
@@ -48,7 +48,7 @@
<value type="bool" key="EditorConfiguration.addFinalNewLine">true</value>
<value type="bool" key="EditorConfiguration.cleanIndentation">true</value>
<value type="bool" key="EditorConfiguration.cleanWhitespace">true</value>
- <value type="bool" key="EditorConfiguration.inEntireDocument">true</value>
+ <value type="bool" key="EditorConfiguration.inEntireDocument">false</value>
</valuemap>
</data>
<data>
@@ -60,18 +60,19 @@
<valuemap type="QVariantMap">
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Desktop</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName">Desktop</value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">{4296dec7-c111-457f-b10d-ba9defe9922b}</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">{888d967a-e5e6-4694-b808-73dc9dc61195}</value>
<value type="int" key="ProjectExplorer.Target.ActiveBuildConfiguration">0</value>
<value type="int" key="ProjectExplorer.Target.ActiveDeployConfiguration">0</value>
- <value type="int" key="ProjectExplorer.Target.ActiveRunConfiguration">0</value>
+ <value type="int" key="ProjectExplorer.Target.ActiveRunConfiguration">4</value>
<valuemap type="QVariantMap" key="ProjectExplorer.Target.BuildConfiguration.0">
<value type="bool" key="CMakeProjectManager.CMakeBuildConfiguration.UseNinja">false</value>
- <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/home/saubatn/Projects/camitk/opensource/camitk/build</value>
+ <value type="QString" key="ProjectExplorer.BuildConfiguration.BuildDirectory">/home/camitk/dev/camitk/build</value>
<valuemap type="QVariantMap" key="ProjectExplorer.BuildConfiguration.BuildStepList.0">
<valuemap type="QVariantMap" key="ProjectExplorer.BuildStepList.Step.0">
- <value type="QString" key="CMakeProjectManager.MakeStep.AdditionalArguments">-j8</value>
+ <value type="QString" key="CMakeProjectManager.MakeStep.AdditionalArguments">-j6</value>
<valuelist type="QVariantList" key="CMakeProjectManager.MakeStep.BuildTargets"/>
<value type="bool" key="CMakeProjectManager.MakeStep.Clean">false</value>
+ <value type="QString" key="CMakeProjectManager.MakeStep.MakeCommand"></value>
<value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
@@ -87,6 +88,7 @@
<value type="QString" key="CMakeProjectManager.MakeStep.AdditionalArguments">clean</value>
<valuelist type="QVariantList" key="CMakeProjectManager.MakeStep.BuildTargets"/>
<value type="bool" key="CMakeProjectManager.MakeStep.Clean">true</value>
+ <value type="QString" key="CMakeProjectManager.MakeStep.MakeCommand"></value>
<value type="bool" key="ProjectExplorer.BuildStep.Enabled">true</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">Make</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
@@ -154,15 +156,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-testcomponents</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-testactions</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-testcomponents</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-testactions</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-testcomponents</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-testactions</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -205,15 +206,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-testactions</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-testcomponents</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-testactions</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-testcomponents</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-testactions</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-testcomponents</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -256,15 +256,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-cepgenerator</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-wizard</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-cepgenerator</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-wizard</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-cepgenerator</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-wizard</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -307,15 +306,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-imp</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-config</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-imp</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-config</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-imp</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-config</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -358,15 +356,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-actionstatemachine</value>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-imp</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments">--noConsole</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-actionstatemachine</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-imp</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-actionstatemachine</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-imp</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -409,15 +406,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-config</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-cepgenerator</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-config</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-cepgenerator</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-config</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-cepgenerator</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -460,15 +456,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-wizard</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">application-actionstatemachine</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-wizard</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">application-actionstatemachine</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-wizard</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.application-actionstatemachine</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -511,60 +506,8 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">library-lmltest</value>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
- <value type="int" key="PE.EnvironmentAspect.Base">2</value>
- <valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">library-lmltest</value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.library-lmltest</value>
- <value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
- <value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
- <value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
- <value type="bool" key="RunConfiguration.UseMultiProcess">false</value>
- <value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
- <value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
- </valuemap>
- <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.8">
- <valuelist type="QVariantList" key="Analyzer.Valgrind.AddedSuppressionFiles"/>
- <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectBusEvents">false</value>
- <value type="bool" key="Analyzer.Valgrind.Callgrind.CollectSystime">false</value>
- <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableBranchSim">false</value>
- <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableCacheSim">false</value>
- <value type="bool" key="Analyzer.Valgrind.Callgrind.EnableEventToolTips">true</value>
- <value type="double" key="Analyzer.Valgrind.Callgrind.MinimumCostRatio">0.01</value>
- <value type="double" key="Analyzer.Valgrind.Callgrind.VisualisationMinimumCostRatio">10</value>
- <value type="bool" key="Analyzer.Valgrind.FilterExternalIssues">true</value>
- <value type="int" key="Analyzer.Valgrind.LeakCheckOnFinish">1</value>
- <value type="int" key="Analyzer.Valgrind.NumCallers">25</value>
- <valuelist type="QVariantList" key="Analyzer.Valgrind.RemovedSuppressionFiles"/>
- <value type="int" key="Analyzer.Valgrind.SelfModifyingCodeDetection">1</value>
- <value type="bool" key="Analyzer.Valgrind.Settings.UseGlobalSettings">true</value>
- <value type="bool" key="Analyzer.Valgrind.ShowReachable">false</value>
- <value type="bool" key="Analyzer.Valgrind.TrackOrigins">true</value>
- <value type="QString" key="Analyzer.Valgrind.ValgrindExecutable">valgrind</value>
- <valuelist type="QVariantList" key="Analyzer.Valgrind.VisibleErrorKinds">
- <value type="int">0</value>
- <value type="int">1</value>
- <value type="int">2</value>
- <value type="int">3</value>
- <value type="int">4</value>
- <value type="int">5</value>
- <value type="int">6</value>
- <value type="int">7</value>
- <value type="int">8</value>
- <value type="int">9</value>
- <value type="int">10</value>
- <value type="int">11</value>
- <value type="int">12</value>
- <value type="int">13</value>
- <value type="int">14</value>
- </valuelist>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">library-pmltest</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
@@ -578,7 +521,7 @@
<value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
<value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
</valuemap>
- <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.9">
+ <valuemap type="QVariantMap" key="ProjectExplorer.Target.RunConfiguration.8">
<valuelist type="QVariantList" key="Analyzer.Valgrind.AddedSuppressionFiles"/>
<value type="bool" key="Analyzer.Valgrind.Callgrind.CollectBusEvents">false</value>
<value type="bool" key="Analyzer.Valgrind.Callgrind.CollectSystime">false</value>
@@ -613,15 +556,14 @@
<value type="int">13</value>
<value type="int">14</value>
</valuelist>
- <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">benchmarkgui</value>
+ <value type="QString" key="CMakeProjectManager.CMakeRunConfiguation.Title">library-lmltest</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.Arguments"></value>
- <value type="bool" key="CMakeProjectManager.CMakeRunConfiguration.UseTerminal">false</value>
<value type="QString" key="CMakeProjectManager.CMakeRunConfiguration.UserWorkingDirectory"></value>
<value type="int" key="PE.EnvironmentAspect.Base">2</value>
<valuelist type="QVariantList" key="PE.EnvironmentAspect.Changes"/>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">benchmarkgui</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.DefaultDisplayName">library-lmltest</value>
<value type="QString" key="ProjectExplorer.ProjectConfiguration.DisplayName"></value>
- <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.benchmarkgui</value>
+ <value type="QString" key="ProjectExplorer.ProjectConfiguration.Id">CMakeProjectManager.CMakeRunConfiguration.library-lmltest</value>
<value type="uint" key="RunConfiguration.QmlDebugServerPort">3768</value>
<value type="bool" key="RunConfiguration.UseCppDebugger">false</value>
<value type="bool" key="RunConfiguration.UseCppDebuggerAuto">true</value>
@@ -629,7 +571,7 @@
<value type="bool" key="RunConfiguration.UseQmlDebugger">false</value>
<value type="bool" key="RunConfiguration.UseQmlDebuggerAuto">true</value>
</valuemap>
- <value type="int" key="ProjectExplorer.Target.RunConfigurationCount">10</value>
+ <value type="int" key="ProjectExplorer.Target.RunConfigurationCount">9</value>
</valuemap>
</data>
<data>
@@ -638,10 +580,10 @@
</data>
<data>
<variable>ProjectExplorer.Project.Updater.FileVersion</variable>
- <value type="int">16</value>
+ <value type="int">18</value>
</data>
<data>
<variable>Version</variable>
- <value type="int">16</value>
+ <value type="int">18</value>
</data>
</qtcreator>
diff --git a/COPYRIGHT b/COPYRIGHT
index 88721c6..f42d7b0 100644
--- a/COPYRIGHT
+++ b/COPYRIGHT
@@ -1,7 +1,7 @@
$CAMITK_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/imaging/CMakeLists.txt b/imaging/CMakeLists.txt
index d734694..149a9ff 100644
--- a/imaging/CMakeLists.txt
+++ b/imaging/CMakeLists.txt
@@ -1,8 +1,6 @@
#--------------------------------------------
# Imaging extension project
#--------------------------------------------
-cmake_minimum_required(VERSION 2.6)
-
# Mini find CamiTK inside SDK
set(CAMITK_DIR ${CMAKE_BINARY_DIR})
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CAMITK_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cmake)
diff --git a/imaging/COPYRIGHT b/imaging/COPYRIGHT
index 2c6300a..f42d7b0 100644
--- a/imaging/COPYRIGHT
+++ b/imaging/COPYRIGHT
@@ -1,7 +1,7 @@
$CAMITK_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/imaging/actions/itkfilters/AnisotropicDiffusion.cpp b/imaging/actions/itkfilters/AnisotropicDiffusion.cpp
index 29914eb..ca3ef40 100644
--- a/imaging/actions/itkfilters/AnisotropicDiffusion.cpp
+++ b/imaging/actions/itkfilters/AnisotropicDiffusion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -121,7 +121,11 @@ void AnisotropicDiffusion::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_anisoDiff";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -235,7 +239,6 @@ vtkSmartPointer<vtkImageData> AnisotropicDiffusion::itkProcessGradientAnisotropi
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
@@ -332,7 +335,6 @@ vtkSmartPointer<vtkImageData> AnisotropicDiffusion::itkProcessCurvatureAnisotrop
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/AnisotropicDiffusion.h b/imaging/actions/itkfilters/AnisotropicDiffusion.h
index 25af6a9..a598c4b 100644
--- a/imaging/actions/itkfilters/AnisotropicDiffusion.h
+++ b/imaging/actions/itkfilters/AnisotropicDiffusion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a anisotropic diffusion on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class AnisotropicDiffusion : public camitk::Action {
+class ITKFILTER_API AnisotropicDiffusion : public camitk::Action {
Q_OBJECT
/// Enumerations
diff --git a/imaging/actions/itkfilters/AnisotropicDiffusion.impl b/imaging/actions/itkfilters/AnisotropicDiffusion.impl
index a43b7ac..4fe5f9d 100644
--- a/imaging/actions/itkfilters/AnisotropicDiffusion.impl
+++ b/imaging/actions/itkfilters/AnisotropicDiffusion.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/CMakeLists.txt b/imaging/actions/itkfilters/CMakeLists.txt
index e29a8ec..962dc23 100644
--- a/imaging/actions/itkfilters/CMakeLists.txt
+++ b/imaging/actions/itkfilters/CMakeLists.txt
@@ -15,7 +15,8 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME CEP_IMAGING
DESCRIPTION "This action features basic ITK image processing filters"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL
+ DEFINES COMPILE_ITKFILTER_API
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
)
diff --git a/imaging/actions/itkfilters/CannyEdgeDetection.cpp b/imaging/actions/itkfilters/CannyEdgeDetection.cpp
index c4f8bdd..5db7a2d 100644
--- a/imaging/actions/itkfilters/CannyEdgeDetection.cpp
+++ b/imaging/actions/itkfilters/CannyEdgeDetection.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -102,7 +102,11 @@ void CannyEdgeDetection::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_edges";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -197,7 +201,6 @@ vtkSmartPointer<vtkImageData> CannyEdgeDetection::itkProcess(vtkSmartPointer<vtk
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/CannyEdgeDetection.h b/imaging/actions/itkfilters/CannyEdgeDetection.h
index 769d690..16a163c 100644
--- a/imaging/actions/itkfilters/CannyEdgeDetection.h
+++ b/imaging/actions/itkfilters/CannyEdgeDetection.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a Canny edge detection on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class CannyEdgeDetection : public camitk::Action {
+class ITKFILTER_API CannyEdgeDetection : public camitk::Action {
Q_OBJECT
public:
diff --git a/imaging/actions/itkfilters/CannyEdgeDetection.impl b/imaging/actions/itkfilters/CannyEdgeDetection.impl
index ee478b7..eec3990 100644
--- a/imaging/actions/itkfilters/CannyEdgeDetection.impl
+++ b/imaging/actions/itkfilters/CannyEdgeDetection.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/ConnectedComponents.cpp b/imaging/actions/itkfilters/ConnectedComponents.cpp
index 3db4d07..1439b06 100644
--- a/imaging/actions/itkfilters/ConnectedComponents.cpp
+++ b/imaging/actions/itkfilters/ConnectedComponents.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -82,7 +82,11 @@ void ConnectedComponents::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_cc";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -149,7 +153,6 @@ vtkSmartPointer<vtkImageData> ConnectedComponents::itkProcess(vtkSmartPointer<vt
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observer->Reset();
observerRelabel->Reset();
diff --git a/imaging/actions/itkfilters/ConnectedComponents.h b/imaging/actions/itkfilters/ConnectedComponents.h
index e7a40cc..27d83a7 100644
--- a/imaging/actions/itkfilters/ConnectedComponents.h
+++ b/imaging/actions/itkfilters/ConnectedComponents.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a connected component analysis on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class ConnectedComponents : public camitk::Action {
+class ITKFILTER_API ConnectedComponents : public camitk::Action {
Q_OBJECT
// declaration of parameters
diff --git a/imaging/actions/itkfilters/ConnectedComponents.impl b/imaging/actions/itkfilters/ConnectedComponents.impl
index b290404..5dfc48d 100644
--- a/imaging/actions/itkfilters/ConnectedComponents.impl
+++ b/imaging/actions/itkfilters/ConnectedComponents.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/Derivative.cpp b/imaging/actions/itkfilters/Derivative.cpp
index 6aa4b57..a834273 100644
--- a/imaging/actions/itkfilters/Derivative.cpp
+++ b/imaging/actions/itkfilters/Derivative.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -116,7 +116,11 @@ void Derivative::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_processed";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -207,8 +211,7 @@ vtkSmartPointer<vtkImageData> Derivative::itkProcess(vtkSmartPointer<vtkImageDat
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
-
+
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/Derivative.h b/imaging/actions/itkfilters/Derivative.h
index 67b5a66..578fe4a 100644
--- a/imaging/actions/itkfilters/Derivative.h
+++ b/imaging/actions/itkfilters/Derivative.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a derivative filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class Derivative : public camitk::Action {
+class ITKFILTER_API Derivative : public camitk::Action {
Q_OBJECT
/// Enumerations
diff --git a/imaging/actions/itkfilters/Derivative.impl b/imaging/actions/itkfilters/Derivative.impl
index 3b5cf36..2aebcd4 100644
--- a/imaging/actions/itkfilters/Derivative.impl
+++ b/imaging/actions/itkfilters/Derivative.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/GaussianFilter.cpp b/imaging/actions/itkfilters/GaussianFilter.cpp
index ab62665..6e0a36c 100644
--- a/imaging/actions/itkfilters/GaussianFilter.cpp
+++ b/imaging/actions/itkfilters/GaussianFilter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -61,10 +61,11 @@ GaussianFilter::GaussianFilter(ActionExtension * extension) : Action(extension)
this->addTag("Gaussian");
// Setting parameters default values
- Property* varianceProperty = new Property(tr("Variance"), 1.0, tr("The variance is an input parameter of the gaussian kernel. \nThe higher the variance is, the blurer the resulting image will be."), "");
+ Property* varianceProperty = new Property(tr("Variance"), 1.0, tr("The variance is an input parameter of the gaussian kernel. \nThe higher the variance is, the blurer the resulting image will be."), "Depending on the \"Use Image Spacing\", this value is in image spacing unit (usually mm) or number of pixels.");
varianceProperty->setAttribute("minimum", 0);
varianceProperty->setAttribute("maximum", 100);
- varianceProperty->setAttribute("singleStep", 0.05);
+ varianceProperty->setAttribute("singleStep", 0.001);
+ varianceProperty->setAttribute("decimals", 3);
addParameter(varianceProperty);
Property* gaussianTypeProperty = new Property(tr("Gaussian Type"), STANDARD, tr("Choose the type of kernel for the gaussian filtering"), "");
@@ -73,6 +74,10 @@ GaussianFilter::GaussianFilter(ActionExtension * extension) : Action(extension)
gaussianTypeValue << tr("Standard") << tr("Recursive IIR");
gaussianTypeProperty->setAttribute("enumNames", gaussianTypeValue);
addParameter(gaussianTypeProperty);
+
+ Property* useImageSpacingProperty = new Property(tr("Use Image Spacing"), true, tr("The variance or standard deviation (sigma) will be evaluated as pixel units if this is off or as physical units if this is on."), "");
+ addParameter(useImageSpacingProperty);
+
}
// --------------- destructor -------------------
@@ -104,7 +109,11 @@ void GaussianFilter::process(ImageComponent * comp) {
QString newName;
QTextStream(&newName) << comp->getName() << "_gaussian";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -114,16 +123,17 @@ void GaussianFilter::process(ImageComponent * comp) {
// ITK filter implementation
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> GaussianFilter::itkProcess(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> outputImage = vtkSmartPointer<vtkImageData>::New();
+ vtkSmartPointer<vtkImageData> outputImage = NULL;
switch (this->getType()) {
- default:
case GaussianFilter::STANDARD:
outputImage = itkProcessStandardGaussian<InputPixelType, OutputPixelType, dim>(img);
break;
case GaussianFilter::RECURSIVE_IIR:
outputImage = itkProcessIIRGaussian<InputPixelType, OutputPixelType, dim>(img);
break;
+ default:
+ break;
}
return outputImage;
@@ -182,6 +192,7 @@ vtkSmartPointer<vtkImageData> GaussianFilter::itkProcessStandardGaussian(vtkSmar
filter->SetInput( castFilter->GetOutput());
filter->AddObserver( itk::ProgressEvent(), observerBlur );
filter->SetVariance( this->variance );
+ filter->SetUseImageSpacing( property("Use Image Spacing").toBool() );
rescaleFilter->SetInput(filter->GetOutput());
rescaleFilter->AddObserver( itk::ProgressEvent(), observerRescale );
@@ -196,17 +207,23 @@ vtkSmartPointer<vtkImageData> GaussianFilter::itkProcessStandardGaussian(vtkSmar
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
- result = vtkImageData::New();
int extent[6];
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
observerCast->Reset();
observerBlur->Reset();
observerRescale->Reset();
+ observerBlur = NULL;
+ observerCast = NULL;
+ observerRescale = NULL;
+
+ castFilter = NULL;
+ filter = NULL;
+ rescaleFilter = NULL;
+
return result;
}
@@ -217,7 +234,7 @@ vtkSmartPointer<vtkImageData> GaussianFilter::itkProcessIIRGaussian(vtkSmartPoin
typedef itk::Image< InputPixelType, dim > InputImageType;
typedef itk::Image< OutputPixelType, dim > OutputImageType;
- // Convert the VTK image given by UMP to an ITK image
+ // Convert the VTK image given by IMP to an ITK image
typedef itk::VTKImageToImageFilter<InputImageType> vtkToItkFilterType;
typename vtkToItkFilterType::Pointer vtkToItkFilter = vtkToItkFilterType::New();
@@ -302,12 +319,16 @@ vtkSmartPointer<vtkImageData> GaussianFilter::itkProcessIIRGaussian(vtkSmartPoin
resultImage->GetExtent(extent);
imageCopy->SetExtent(extent);
imageCopy->DeepCopy(resultImage);
- imageCopy->Update();
observerX->Reset();
observerY->Reset();
observerZ->Reset();
+ // Set CamiTK progress bar back to zero (the processing filter is over)
+ observerX = NULL;
+ observerY = NULL;
+ observerZ = NULL;
+
return imageCopy;
}
diff --git a/imaging/actions/itkfilters/GaussianFilter.h b/imaging/actions/itkfilters/GaussianFilter.h
index 3d3fa2d..1e74ebf 100644
--- a/imaging/actions/itkfilters/GaussianFilter.h
+++ b/imaging/actions/itkfilters/GaussianFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a gaussian filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class GaussianFilter : public camitk::Action {
+class ITKFILTER_API GaussianFilter : public camitk::Action {
Q_OBJECT
/// Enumerations
diff --git a/imaging/actions/itkfilters/GaussianFilter.impl b/imaging/actions/itkfilters/GaussianFilter.impl
index 5a26d3f..14cd04b 100644
--- a/imaging/actions/itkfilters/GaussianFilter.impl
+++ b/imaging/actions/itkfilters/GaussianFilter.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/GradientMagnitude.cpp b/imaging/actions/itkfilters/GradientMagnitude.cpp
index 1c2d1ed..7e739a4 100644
--- a/imaging/actions/itkfilters/GradientMagnitude.cpp
+++ b/imaging/actions/itkfilters/GradientMagnitude.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -71,7 +71,12 @@ void GradientMagnitude::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_gradient";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -135,7 +140,6 @@ vtkSmartPointer<vtkImageData> GradientMagnitude::itkProcess(vtkSmartPointer<vtkI
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/GradientMagnitude.h b/imaging/actions/itkfilters/GradientMagnitude.h
index 21cbfa7..0780c6f 100644
--- a/imaging/actions/itkfilters/GradientMagnitude.h
+++ b/imaging/actions/itkfilters/GradientMagnitude.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -39,7 +41,7 @@
* Perform a gradient magnitude filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class GradientMagnitude : public camitk::Action {
+class ITKFILTER_API GradientMagnitude : public camitk::Action {
public:
/// Default Constructor
diff --git a/imaging/actions/itkfilters/GradientMagnitude.impl b/imaging/actions/itkfilters/GradientMagnitude.impl
index 0d3d965..37bbc3a 100644
--- a/imaging/actions/itkfilters/GradientMagnitude.impl
+++ b/imaging/actions/itkfilters/GradientMagnitude.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.cpp b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.cpp
index 77e3ead..147d994 100644
--- a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.cpp
+++ b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -95,7 +95,12 @@ void GradientMagnitudeRecursiveGaussian::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_smoothedGradient";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -160,7 +165,6 @@ vtkSmartPointer<vtkImageData> GradientMagnitudeRecursiveGaussian::itkProcess(vtk
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.h b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.h
index fcf4054..3f4fb16 100644
--- a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.h
+++ b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,7 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +39,7 @@
* Perform a gradient magnitude recursive filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class GradientMagnitudeRecursiveGaussian : public camitk::Action {
+class ITKFILTER_API GradientMagnitudeRecursiveGaussian : public camitk::Action {
Q_OBJECT
diff --git a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.impl b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.impl
index 9279494..742a57e 100644
--- a/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.impl
+++ b/imaging/actions/itkfilters/GradientMagnitudeRecursiveGaussian.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/ITKFilterAPI.h b/imaging/actions/itkfilters/ITKFilterAPI.h
new file mode 100644
index 0000000..b9d8490
--- /dev/null
+++ b/imaging/actions/itkfilters/ITKFilterAPI.h
@@ -0,0 +1,9 @@
+#if defined(_WIN32) // MSVC and mingw
+#ifdef COMPILE_ITKFILTER_API
+#define ITKFILTER_API __declspec(dllexport)
+#else
+#define ITKFILTER_API __declspec(dllimport)
+#endif // COMPILE_MY_COMPONENT_API
+#else // for all other platforms ITKFILTER_API is defined to be "nothing"
+#define ITKFILTER_API
+#endif // MSVC and mingw
\ No newline at end of file
diff --git a/imaging/actions/itkfilters/ITKFiltersExtension.cpp b/imaging/actions/itkfilters/ITKFiltersExtension.cpp
index 302a451..e514776 100644
--- a/imaging/actions/itkfilters/ITKFiltersExtension.cpp
+++ b/imaging/actions/itkfilters/ITKFiltersExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,9 +40,6 @@
#include "ConnectedComponents.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(itkfiltersextension, ITKFiltersExtension);
-
// --------------- getActions -------------------
void ITKFiltersExtension::init() {
registerNewAction(CannyEdgeDetection);
diff --git a/imaging/actions/itkfilters/ITKFiltersExtension.h b/imaging/actions/itkfilters/ITKFiltersExtension.h
index cd79707..18f7df8 100644
--- a/imaging/actions/itkfilters/ITKFiltersExtension.h
+++ b/imaging/actions/itkfilters/ITKFiltersExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,14 +37,15 @@
**/
class ITKFiltersExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.imaging.action.itkfilters")
public:
/// the constructor
- ITKFiltersExtension() : ActionExtension() {};
+ ITKFiltersExtension() : ActionExtension() {}
/// the destructor
- virtual ~ITKFiltersExtension() {};
+ virtual ~ITKFiltersExtension() {}
/// Method that return the action extension name
virtual QString getName() {
diff --git a/imaging/actions/itkfilters/Laplacian.cpp b/imaging/actions/itkfilters/Laplacian.cpp
index 194bb79..3cbcab5 100644
--- a/imaging/actions/itkfilters/Laplacian.cpp
+++ b/imaging/actions/itkfilters/Laplacian.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -89,7 +89,12 @@ void Laplacian::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_laplacian";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -181,7 +186,6 @@ vtkSmartPointer<vtkImageData> Laplacian::itkProcess(vtkSmartPointer<vtkImageData
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/Laplacian.h b/imaging/actions/itkfilters/Laplacian.h
index 614dca3..803349d 100644
--- a/imaging/actions/itkfilters/Laplacian.h
+++ b/imaging/actions/itkfilters/Laplacian.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a laplacian filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class Laplacian : public camitk::Action {
+class ITKFILTER_API Laplacian : public camitk::Action {
Q_OBJECT
diff --git a/imaging/actions/itkfilters/Laplacian.impl b/imaging/actions/itkfilters/Laplacian.impl
index 9b4551e..139050e 100644
--- a/imaging/actions/itkfilters/Laplacian.impl
+++ b/imaging/actions/itkfilters/Laplacian.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.cpp b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.cpp
index e9c7eb5..3be9860 100644
--- a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.cpp
+++ b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -93,7 +93,12 @@ void LaplacianRecursiveGaussian::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_LoG";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -176,7 +181,6 @@ vtkSmartPointer<vtkImageData> LaplacianRecursiveGaussian::itkProcess(vtkSmartPoi
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.h b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.h
index 2b2ffb8..29b386a 100644
--- a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.h
+++ b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a laplacian-gaussian recursive filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class LaplacianRecursiveGaussian : public camitk::Action {
+class ITKFILTER_API LaplacianRecursiveGaussian : public camitk::Action {
Q_OBJECT
public:
diff --git a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.impl b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.impl
index 8aaf239..63c51e3 100644
--- a/imaging/actions/itkfilters/LaplacianRecursiveGaussian.impl
+++ b/imaging/actions/itkfilters/LaplacianRecursiveGaussian.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/LaplacianSharpening.cpp b/imaging/actions/itkfilters/LaplacianSharpening.cpp
index 3f01e3f..1d5340b 100644
--- a/imaging/actions/itkfilters/LaplacianSharpening.cpp
+++ b/imaging/actions/itkfilters/LaplacianSharpening.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -75,7 +75,12 @@ void LaplacianSharpening::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_sharpened";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -132,7 +137,6 @@ vtkSmartPointer<vtkImageData> LaplacianSharpening::itkProcess(vtkSmartPointer<vt
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/LaplacianSharpening.h b/imaging/actions/itkfilters/LaplacianSharpening.h
index 83c6cab..2647a9f 100644
--- a/imaging/actions/itkfilters/LaplacianSharpening.h
+++ b/imaging/actions/itkfilters/LaplacianSharpening.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a laplacian sharpening filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class LaplacianSharpening : public camitk::Action {
+class ITKFILTER_API LaplacianSharpening : public camitk::Action {
public:
diff --git a/imaging/actions/itkfilters/LaplacianSharpening.impl b/imaging/actions/itkfilters/LaplacianSharpening.impl
index 14170e4..78042d9 100644
--- a/imaging/actions/itkfilters/LaplacianSharpening.impl
+++ b/imaging/actions/itkfilters/LaplacianSharpening.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/MeanFilter.cpp b/imaging/actions/itkfilters/MeanFilter.cpp
index b2d4be3..a5717ea 100644
--- a/imaging/actions/itkfilters/MeanFilter.cpp
+++ b/imaging/actions/itkfilters/MeanFilter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -111,7 +111,12 @@ void MeanFilter::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_mean";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -181,7 +186,6 @@ vtkSmartPointer<vtkImageData> MeanFilter::itkProcess(vtkSmartPointer<vtkImageDat
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/MeanFilter.h b/imaging/actions/itkfilters/MeanFilter.h
index bcbcd9a..1341494 100644
--- a/imaging/actions/itkfilters/MeanFilter.h
+++ b/imaging/actions/itkfilters/MeanFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a mean filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class MeanFilter : public camitk::Action {
+class ITKFILTER_API MeanFilter : public camitk::Action {
Q_OBJECT
public:
diff --git a/imaging/actions/itkfilters/MeanFilter.impl b/imaging/actions/itkfilters/MeanFilter.impl
index 9bc3fd9..835db73 100644
--- a/imaging/actions/itkfilters/MeanFilter.impl
+++ b/imaging/actions/itkfilters/MeanFilter.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/MedianFilter.cpp b/imaging/actions/itkfilters/MedianFilter.cpp
index 1b355db..5237d26 100644
--- a/imaging/actions/itkfilters/MedianFilter.cpp
+++ b/imaging/actions/itkfilters/MedianFilter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -112,7 +112,12 @@ void MedianFilter::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_median";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent *outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -184,7 +189,6 @@ vtkSmartPointer<vtkImageData> MedianFilter::itkProcess(vtkSmartPointer<vtkImageD
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/MedianFilter.h b/imaging/actions/itkfilters/MedianFilter.h
index 7d80498..1f811b4 100644
--- a/imaging/actions/itkfilters/MedianFilter.h
+++ b/imaging/actions/itkfilters/MedianFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -38,7 +40,7 @@
* Perform a median filter on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class MedianFilter : public camitk::Action {
+class ITKFILTER_API MedianFilter : public camitk::Action {
Q_OBJECT
diff --git a/imaging/actions/itkfilters/MedianFilter.impl b/imaging/actions/itkfilters/MedianFilter.impl
index d31ebfb..4e4bf80 100644
--- a/imaging/actions/itkfilters/MedianFilter.impl
+++ b/imaging/actions/itkfilters/MedianFilter.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/MorphologicalOperators.cpp b/imaging/actions/itkfilters/MorphologicalOperators.cpp
index 4cbaf11..706ec80 100644
--- a/imaging/actions/itkfilters/MorphologicalOperators.cpp
+++ b/imaging/actions/itkfilters/MorphologicalOperators.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -113,7 +113,12 @@ void MorphologicalOperators::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << suffix;
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -123,7 +128,7 @@ void MorphologicalOperators::process(ImageComponent * comp) {
// ITK filter implementation
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::itkProcess(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> result;
+ vtkSmartPointer<vtkImageData> result = NULL;
switch (this->getMorphoType()) {
@@ -187,7 +192,7 @@ template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage;
+
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -198,16 +203,16 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSma
typedef itk::VTKImageToImageFilter<InputImageType> vtkToItkFilterType;
typename vtkToItkFilterType::Pointer vtkToItkFilter = vtkToItkFilterType::New();
- // In the same way, once the image is filtered, we need to convert it again to
- // VTK format to give it to CamiTK.
- typedef itk::ImageToVTKImageFilter<OutputImageType> itkToVtkFilterType;
- typename itkToVtkFilterType::Pointer itkToVtkFilter = itkToVtkFilterType::New();
-
// Declare and create your own private ITK filter here...
typedef itk::BinaryBallStructuringElement<InputPixelType, dim> StructuringElementType;
typedef itk::BinaryErodeImageFilter <InputImageType, OutputImageType, StructuringElementType> FilterType;
typename FilterType::Pointer filter = FilterType::New();
+ // In the same way, once the image is filtered, we need to convert it again to
+ // VTK format to give it to CamiTK.
+ typedef itk::ImageToVTKImageFilter<OutputImageType> itkToVtkFilterType;
+ typename itkToVtkFilterType::Pointer itkToVtkFilter = itkToVtkFilterType::New();
+
// To update CamiTK progress bar while filtering, add an ITK observer to the filters.
ItkProgressObserver::Pointer observer = ItkProgressObserver::New();
// ITK observers generally give values between 0 and 1, and CamiTK progress bar
@@ -226,6 +231,8 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSma
structuringElement.CreateStructuringElement();
filter->SetKernel(structuringElement);
+ filter->Update();
+
// From ITK to VTK
itkToVtkFilter->SetInput(filter->GetOutput());
@@ -235,14 +242,14 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSma
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observer->Reset();
+ observer = NULL;
return filteredImage;
@@ -251,7 +258,6 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryErosionFilter(vtkSma
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryDilationFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage;
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -290,6 +296,8 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryDilationFilter(vtkSm
structuringElement.CreateStructuringElement();
filter->SetKernel(structuringElement);
+ filter->Update();
+
// From ITK to VTK
itkToVtkFilter->SetInput(filter->GetOutput());
@@ -299,14 +307,14 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryDilationFilter(vtkSm
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observer->Reset();
+ observer = NULL;
return filteredImage;
@@ -315,7 +323,6 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryDilationFilter(vtkSm
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryClosureFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage = NULL;
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -360,10 +367,12 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryClosureFilter(vtkSma
dilationFilter->SetInput(vtkToItkFilter->GetOutput());
dilationFilter->AddObserver ( itk::ProgressEvent(), observerDilation );
dilationFilter->SetKernel(structuringElement);
+ dilationFilter->Update();
erosionFilter->SetInput(dilationFilter->GetOutput());
erosionFilter->AddObserver( itk::ProgressEvent(), observerErosion );
erosionFilter->SetKernel(structuringElement);
+ erosionFilter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(erosionFilter->GetOutput());
@@ -374,16 +383,18 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryClosureFilter(vtkSma
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observerErosion->Reset();
observerDilation->Reset();
+ observerDilation = NULL;
+ observerErosion = NULL;
+
return filteredImage;
}
@@ -391,7 +402,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryClosureFilter(vtkSma
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryOpeningFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage;
+
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -436,10 +447,12 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryOpeningFilter(vtkSma
erosionFilter->SetInput(vtkToItkFilter->GetOutput());
erosionFilter->AddObserver( itk::ProgressEvent(), observerErosion );
erosionFilter->SetKernel(structuringElement);
+ erosionFilter->Update();
dilationFilter->SetInput(erosionFilter->GetOutput());
dilationFilter->AddObserver ( itk::ProgressEvent(), observerDilation );
dilationFilter->SetKernel(structuringElement);
+ dilationFilter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(dilationFilter->GetOutput());
@@ -450,16 +463,18 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryOpeningFilter(vtkSma
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observerErosion->Reset();
observerDilation->Reset();
+ observerErosion = NULL;
+ observerDilation = NULL;
+
return filteredImage;
}
@@ -468,7 +483,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::binaryOpeningFilter(vtkSma
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelErosionFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage;
+
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -506,6 +521,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelErosionFilter(vtk
structuringElement.SetRadius( structuringElementSize );
structuringElement.CreateStructuringElement();
filter->SetKernel(structuringElement);
+ filter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(filter->GetOutput());
@@ -516,14 +532,14 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelErosionFilter(vtk
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observer->Reset();
+ observer = NULL;
return filteredImage;
@@ -533,7 +549,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelErosionFilter(vtk
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage;
+
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -571,6 +587,7 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vt
structuringElement.SetRadius( structuringElementSize );
structuringElement.CreateStructuringElement();
filter->SetKernel(structuringElement);
+ filter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(filter->GetOutput());
@@ -581,14 +598,14 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vt
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observer->Reset();
+ observer = NULL;
return filteredImage;
@@ -596,7 +613,6 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelDilationFilter(vt
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelClosureFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage = NULL;
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -641,10 +657,12 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelClosureFilter(vtk
dilationFilter->SetInput(vtkToItkFilter->GetOutput());
dilationFilter->AddObserver ( itk::ProgressEvent(), observerDilation );
dilationFilter->SetKernel(structuringElement);
+ dilationFilter->Update();
erosionFilter->SetInput(dilationFilter->GetOutput());
erosionFilter->AddObserver( itk::ProgressEvent(), observerErosion );
erosionFilter->SetKernel(structuringElement);
+ erosionFilter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(erosionFilter->GetOutput());
@@ -655,15 +673,16 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelClosureFilter(vtk
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observerErosion->Reset();
observerDilation->Reset();
+ observerDilation = NULL;
+ observerErosion = NULL;
return filteredImage;
@@ -672,7 +691,6 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelClosureFilter(vtk
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelOpeningFilter(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> filteredImage = NULL;
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
// types of the tamplate.
@@ -717,10 +735,12 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelOpeningFilter(vtk
erosionFilter->SetInput(vtkToItkFilter->GetOutput());
erosionFilter->AddObserver( itk::ProgressEvent(), observerErosion );
erosionFilter->SetKernel(structuringElement);
+ erosionFilter->Update();
dilationFilter->SetInput(erosionFilter->GetOutput());
dilationFilter->AddObserver ( itk::ProgressEvent(), observerDilation );
dilationFilter->SetKernel(structuringElement);
+ dilationFilter->Update();
// From ITK to VTK
itkToVtkFilter->SetInput(dilationFilter->GetOutput());
@@ -731,15 +751,16 @@ vtkSmartPointer<vtkImageData> MorphologicalOperators::greyLevelOpeningFilter(vtk
// --------------------- Create and return a copy (the filters will be deleted)--
vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
- filteredImage = vtkImageData::New();
+ vtkSmartPointer<vtkImageData> filteredImage = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
filteredImage->SetExtent(extent);
filteredImage->DeepCopy(resultImage);
- filteredImage->Update();
observerErosion->Reset();
observerDilation->Reset();
+ observerDilation = NULL;
+ observerErosion = NULL;
return filteredImage;
diff --git a/imaging/actions/itkfilters/MorphologicalOperators.h b/imaging/actions/itkfilters/MorphologicalOperators.h
index 10ff945..17ae91b 100644
--- a/imaging/actions/itkfilters/MorphologicalOperators.h
+++ b/imaging/actions/itkfilters/MorphologicalOperators.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
#include <itkImage.h>
/**
@@ -40,7 +42,7 @@
* Perform some morphological operators such as opening, closing ...
*
**/
-class MorphologicalOperators : public camitk::Action {
+class ITKFILTER_API MorphologicalOperators : public camitk::Action {
Q_OBJECT
/// Enumerations
diff --git a/imaging/actions/itkfilters/MorphologicalOperators.impl b/imaging/actions/itkfilters/MorphologicalOperators.impl
index d23d1da..0e3e38e 100644
--- a/imaging/actions/itkfilters/MorphologicalOperators.impl
+++ b/imaging/actions/itkfilters/MorphologicalOperators.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/SobelEdgeDetection.cpp b/imaging/actions/itkfilters/SobelEdgeDetection.cpp
index e5f0896..3a01823 100644
--- a/imaging/actions/itkfilters/SobelEdgeDetection.cpp
+++ b/imaging/actions/itkfilters/SobelEdgeDetection.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -82,7 +82,12 @@ void SobelEdgeDetection::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_edges";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -177,7 +182,6 @@ vtkSmartPointer<vtkImageData> SobelEdgeDetection::itkProcess(vtkSmartPointer<vtk
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itkfilters/SobelEdgeDetection.h b/imaging/actions/itkfilters/SobelEdgeDetection.h
index 651cfc5..594e1a8 100644
--- a/imaging/actions/itkfilters/SobelEdgeDetection.h
+++ b/imaging/actions/itkfilters/SobelEdgeDetection.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,8 @@
#include <ImageComponent.h>
#include <ActionWidget.h>
+#include "ITKFilterAPI.h"
+
/**
*
* @ingroup group_cepimaging_actions_itkfilters
@@ -39,7 +41,7 @@
* Perform the Sobel edge detection on the @ref camitk::ImageComponent "ImageComponent"
*
**/
-class SobelEdgeDetection : public camitk::Action {
+class ITKFILTER_API SobelEdgeDetection : public camitk::Action {
Q_OBJECT
diff --git a/imaging/actions/itkfilters/SobelEdgeDetection.impl b/imaging/actions/itkfilters/SobelEdgeDetection.impl
index 31814fd..3e247cf 100644
--- a/imaging/actions/itkfilters/SobelEdgeDetection.impl
+++ b/imaging/actions/itkfilters/SobelEdgeDetection.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itkfilters/resources/translate/translate_en.ts b/imaging/actions/itkfilters/resources/translate/translate_en.ts
index 2cf208f..1fb90e0 100644
--- a/imaging/actions/itkfilters/resources/translate/translate_en.ts
+++ b/imaging/actions/itkfilters/resources/translate/translate_en.ts
@@ -166,6 +166,16 @@ Plus grande est la variance, plus flou sera l'image résultante.</translati
<source>Recursive IIR</source>
<translation>IIR récursif</translation>
</message>
+ <message>
+ <location filename="../../../../src/imaging/actions/itkfilters/GaussianFilter.cpp" line="78"/>
+ <source>Use Image Spacing</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/imaging/actions/itkfilters/GaussianFilter.cpp" line="78"/>
+ <source>The variance or standard deviation (sigma) will be evaluated as pixel units if this is off or as physical units if this is on.</source>
+ <translation type="unfinished"></translation>
+ </message>
</context>
<context>
<name>GradientMagnitudeRecursiveGaussian</name>
diff --git a/imaging/actions/itkfilters/resources/translate/translate_fr.ts b/imaging/actions/itkfilters/resources/translate/translate_fr.ts
index 2cf208f..714abd6 100644
--- a/imaging/actions/itkfilters/resources/translate/translate_fr.ts
+++ b/imaging/actions/itkfilters/resources/translate/translate_fr.ts
@@ -1,6 +1,6 @@
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
+<TS version="2.0" language="fr_FR">
<context>
<name>AnisotropicDiffusion</name>
<message>
@@ -166,6 +166,16 @@ Plus grande est la variance, plus flou sera l'image résultante.</translati
<source>Recursive IIR</source>
<translation>IIR récursif</translation>
</message>
+ <message>
+ <location filename="../../../../src/imaging/actions/itkfilters/GaussianFilter.cpp" line="78"/>
+ <source>Use Image Spacing</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/imaging/actions/itkfilters/GaussianFilter.cpp" line="78"/>
+ <source>The variance or standard deviation (sigma) will be evaluated as pixel units if this is off or as physical units if this is on.</source>
+ <translation type="unfinished"></translation>
+ </message>
</context>
<context>
<name>GradientMagnitudeRecursiveGaussian</name>
diff --git a/imaging/actions/itksegmentation/CMakeLists.txt b/imaging/actions/itksegmentation/CMakeLists.txt
index dd8f4a3..698cadf 100644
--- a/imaging/actions/itksegmentation/CMakeLists.txt
+++ b/imaging/actions/itksegmentation/CMakeLists.txt
@@ -5,5 +5,5 @@ camitk_extension( ACTION_EXTENSION
CXX_FLAGS "-w"
DESCRIPTION "This action features basic ITK image processing segmentation algorithms"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh diaphragm.pml head1.STL
+ TEST_FILES bassin.msh diaphragm.pml head1.STL liver-smooth.obj Mesh.off mixed_3D_beam.msh robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
)
\ No newline at end of file
diff --git a/imaging/actions/itksegmentation/ITKSegmentationExtension.cpp b/imaging/actions/itksegmentation/ITKSegmentationExtension.cpp
index fb54953..87bd771 100644
--- a/imaging/actions/itksegmentation/ITKSegmentationExtension.cpp
+++ b/imaging/actions/itksegmentation/ITKSegmentationExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,9 +30,6 @@
#include "ManualThreshold.h"
#include "RegionGrowing.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(itksegmentationextension, ITKSegmentationExtension);
-
// --------------- getActions -------------------
void ITKSegmentationExtension::init() {
registerNewAction(OtsuFilter);
diff --git a/imaging/actions/itksegmentation/ITKSegmentationExtension.h b/imaging/actions/itksegmentation/ITKSegmentationExtension.h
index 210cc9b..a35d625 100644
--- a/imaging/actions/itksegmentation/ITKSegmentationExtension.h
+++ b/imaging/actions/itksegmentation/ITKSegmentationExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,7 +37,8 @@
**/
class ITKSegmentationExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.imaging.action.itksegmentation")
public:
/// the constructor
diff --git a/imaging/actions/itksegmentation/ManualThreshold.cpp b/imaging/actions/itksegmentation/ManualThreshold.cpp
index 5f441f0..f6c77bc 100644
--- a/imaging/actions/itksegmentation/ManualThreshold.cpp
+++ b/imaging/actions/itksegmentation/ManualThreshold.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -47,8 +47,8 @@ ManualThreshold::ManualThreshold(ActionExtension * extension) : Action(extension
setName("Manual Threshold Filter");
setDescription("<br/>Sets all the pixels / voxels scalar value according to the following rules:\
<ul> \
- <li>low threshold < scalar value < high threshold \=> white (255) </li> \
- <li>scalar value < low threshold OR scalar value > high threshold \=> black (0)</li> \
+ <li>low threshold < scalar value < high threshold > white (255) </li> \
+ <li>scalar value < low threshold OR scalar value > high threshold > black (0)</li> \
</ul>");
setComponent("ImageComponent");
@@ -97,7 +97,12 @@ void ManualThreshold::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_threshold";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -152,12 +157,11 @@ vtkSmartPointer<vtkImageData> ManualThreshold::itkProcess(vtkSmartPointer<vtkIma
itkToVtkFilter->Update();
// --------------------- Create and return a copy (the filters will be deleted)--
- vtkImageData * resultImage = itkToVtkFilter->GetOutput();
+ vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
int extent[6];
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
diff --git a/imaging/actions/itksegmentation/ManualThreshold.h b/imaging/actions/itksegmentation/ManualThreshold.h
index 9386dc8..53535ad 100644
--- a/imaging/actions/itksegmentation/ManualThreshold.h
+++ b/imaging/actions/itksegmentation/ManualThreshold.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/ManualThreshold.impl b/imaging/actions/itksegmentation/ManualThreshold.impl
index a526db7..7f7a904 100644
--- a/imaging/actions/itksegmentation/ManualThreshold.impl
+++ b/imaging/actions/itksegmentation/ManualThreshold.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/OtsuFilter.cpp b/imaging/actions/itksegmentation/OtsuFilter.cpp
index 3666e92..282b712 100644
--- a/imaging/actions/itksegmentation/OtsuFilter.cpp
+++ b/imaging/actions/itksegmentation/OtsuFilter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,6 +38,9 @@
#include <itkVTKImageToImageFilter.h>
#include <itkOtsuThresholdImageFilter.h>
+// Tmp Include
+#include <vtkSmartPointer.h>
+#include <vtkImageThreshold.h>
using namespace camitk;
@@ -94,12 +97,174 @@ void OtsuFilter::process(ImageComponent * comp) {
this->insideValue = property("Inside value").toInt();
this->outsideValue = property("Outside value").toInt();
- // ITK filter implementation using templates
+ /*
+ // V01: Only VTK, no pipeline cutting
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // b)If then, you close the original image -> memory of the original image is freed
+ // 2- Closing original image first
+ // a) If you first close original image -> no memory is freed
+ // (the threshold image is still linked to the original image via the pipeline)
+ // b) If you then close the threshold image -> memory of both images is freed
+
+ vtkSmartPointer<vtkImageData> inputImage = comp->getImageData();
+ vtkSmartPointer<vtkImageData> outputImage = NULL;
+ vtkSmartPointer<vtkImageThreshold> imageThreshold = vtkSmartPointer<vtkImageThreshold>::New();
+ imageThreshold->SetInput(inputImage);
+ unsigned char lower = 100;
+ unsigned char upper = 200;
+ imageThreshold->ThresholdBetween(lower, upper);
+ imageThreshold->ReplaceInOn();
+ imageThreshold->SetInValue(insideValue);
+ imageThreshold->ReplaceOutOn();
+ imageThreshold->SetOutValue(outsideValue);
+ imageThreshold->Update();
+ outputImage = imageThreshold->GetOutput();
+ QString newName;
+ QTextStream(&newName) << comp->getName() << "_otsu";
+ new ImageComponent(outputImage, newName);
+ Application::refresh();
+ */
+
+ /*
+ // V02: Only VTK, pipeline cutting by deep copy
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // b)If then, you close the original image -> memory of the original image is freed
+ // 2- Closing original image first
+ // a) If you first close original image -> memory of the original image is freed
+ // (the threshold image is no more linked to the original image via the pipeline)
+ // b) If you then close the threshold image -> memory of the threshold image is freed
+ vtkSmartPointer<vtkImageData> inputImage = comp->getImageData();
+ vtkSmartPointer<vtkImageData> outputImage = NULL;
+ vtkSmartPointer<vtkImageThreshold> imageThreshold = vtkSmartPointer<vtkImageThreshold>::New();
+ imageThreshold->SetInput(inputImage);
+ unsigned char lower = 100;
+ unsigned char upper = 200;
+ imageThreshold->ThresholdBetween(lower, upper);
+ imageThreshold->ReplaceInOn();
+ imageThreshold->SetInValue(insideValue);
+ imageThreshold->ReplaceOutOn();
+ imageThreshold->SetOutValue(outsideValue);
+ imageThreshold->Update();
+ outputImage = imageThreshold->GetOutput();
+ vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
+ int extent[6];
+ outputImage->GetExtent(extent);
+ result->SetExtent(extent);
+ result->DeepCopy(outputImage);
+ result->Update();
+ QString newName;
+ QTextStream(&newName) << comp->getName() << "_otsu";
+ new ImageComponent(result, newName);
+ Application::refresh();
+ */
+
+ /*
+ // V03: VTK and Itk Pipeline, trying to cut the pipeline by deep copy
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // b)If then, you close the original image -> memory of the original image is NOT freed
+ // --> A counter from the pipeline remains on the original image
+ // 2- Closing original image first
+ // a) If you first close original image -> memory of the original image is NOT freed
+ // --> A counter from the pipeline remains on the original image
+ // b) If you then close the threshod image -> memory of the threshold image is freed
+ vtkSmartPointer<vtkImageData> inputImage = comp->getImageData();
+ vtkSmartPointer<vtkImageData> outputImage = implementProcess(inputImage);
+ vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
+ int extent[6];
+ outputImage->GetExtent(extent);
+ result->SetExtent(extent);
+ result->DeepCopy(outputImage);
+ result->Update();
+ QString newName;
+ QTextStream(&newName) << comp->getName() << "_otsu";
+ new ImageComponent(result, newName);
+ Application::refresh();
+ */
+
+ /*
+ // V04: VTK and Itk Pipeline, trying to cut the pipeline by deep copy and pointers
+ // ==> The worse: the original image is never freed...
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // b)If then, you close the original image -> memory of the original image is NOT freed
+ // --> A counter from the pipeline remains on the original image
+ // 2- Closing original image first
+ // a) If you first close original image -> memory of the original image is NOT freed
+ // --> A counter from the pipeline remains on the original image
+ // b) If you then close the threshod image -> memory of the threshold image is freed
+ vtkSmartPointer<vtkImageData> inputImage = comp->getImageData();
+ vtkSmartPointer<vtkImageData> outputImage = implementProcess(inputImage);
+ vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
+ int extent[6];
+ outputImage->GetExtent(extent);
+ result->SetExtent(extent);
+ result->DeepCopy(outputImage);
+ result->Update();
+ QString newName;
+ QTextStream(&newName) << comp->getName() << "_otsu";
+ new ImageComponent(result, newName);
+ Application::refresh();
+ */
+
+ /*
+ // V05: VTK and Itk Pipeline, trying to cut the pipeline by 2 deep copies (argh !)
+ // ==> One of the created copies is never deleted !
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // But NOT the memory of its copy !
+ // b)If then, you close the original image -> memory of the original image is freed
+ // 2- Closing original image first
+ // a) If you first close original image -> memory of the original image is freed
+ // b) If you then close the threshod image -> memory of the threshold image is freed
+ // But NOT the memory of its copy !
+ vtkSmartPointer<vtkImageData> inputImage = vtkSmartPointer<vtkImageData>::New();
+ int extentInput[6];
+ comp->getImageData()->GetExtent(extentInput);
+ inputImage->SetExtent(extentInput);
+ inputImage->DeepCopy(comp->getImageData());
+ inputImage->Update();
+ vtkSmartPointer<vtkImageData> outputImage = implementProcess(inputImage);
+ inputImage = NULL;
+ vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
+ int extent[6];
+ outputImage->GetExtent(extent);
+ result->SetExtent(extent);
+ result->DeepCopy(outputImage);
+ result->Update();
+ outputImage = NULL;
+
+ QString newName;
+ QTextStream(&newName) << comp->getName() << "_otsu";
+ new ImageComponent(result, newName);
+ result = NULL;
+ Application::refresh();
+ */
+
+
+ // V06: VTK and Itk Pipeline, trying to cut the pipeline by 2 shallow copies (bof...)
+ // ==> One of the created copies is never deleted !
+ // 1- Closing threshold image first
+ // a)If you close first threshold image -> memory of the threshold image is freed
+ // But NOT the memory of its copy !
+ // b)If then, you close the original image -> memory of the original image is freed
+ // 2- Closing original image first
+ // a) If you first close original image -> memory of the original image is freed
+ // b) If you then close the threshod image -> memory of the threshold image is freed
+ // But NOT the memory of its copy !
vtkSmartPointer<vtkImageData> inputImage = comp->getImageData();
- vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
+ vtkSmartPointer<vtkImageData> outputImage = implementProcess(inputImage);
+
QString newName;
QTextStream(&newName) << comp->getName() << "_otsu";
- new ImageComponent(outputImage, newName);
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
+
Application::refresh();
}
@@ -109,7 +274,6 @@ void OtsuFilter::process(ImageComponent * comp) {
// ITK filter implementation
template <class InputPixelType, class OutputPixelType, const int dim>
vtkSmartPointer<vtkImageData> OtsuFilter::itkProcess(vtkSmartPointer<vtkImageData> img) {
- vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
// --------------------- Filters declaration and creation ----------------------
// Define ITK input and output image types with respect to the instanciation
@@ -123,13 +287,13 @@ vtkSmartPointer<vtkImageData> OtsuFilter::itkProcess(vtkSmartPointer<vtkImageDat
// Declare and create your own private ITK filter here...
typedef itk::OtsuThresholdImageFilter<InputImageType, OutputImageType> FilterType;
- typename FilterType::Pointer filter = FilterType::New();
+ typename itk::SmartPointer<FilterType> filter = FilterType::New();
// In the same way, once the image is filtered, we need to convert it again to
// VTK format to give it to CamiTK.
typedef itk::ImageToVTKImageFilter<OutputImageType> itkToVtkFilterType;
typename itkToVtkFilterType::Pointer itkToVtkFilter = itkToVtkFilterType::New();
-// ------------------------- WRITE YOUR CODE HERE ----------------------------------
+
// To update CamiTK progress bar while filtering, add an ITK observer to the filters.
ItkProgressObserver::Pointer observer = ItkProgressObserver::New();
@@ -140,34 +304,34 @@ vtkSmartPointer<vtkImageData> OtsuFilter::itkProcess(vtkSmartPointer<vtkImageDat
// --------------------- Plug filters and parameters ---------------------------
// From VTK to ITK
vtkToItkFilter->SetInput(img);
+
// For the filter itself
filter->SetInput(vtkToItkFilter->GetOutput());
filter->AddObserver ( itk::ProgressEvent(), observer );
filter->SetOutsideValue(this->outsideValue);
filter->SetInsideValue(this->insideValue);
-// ------------------------- WRITE YOUR CODE HERE ----------------------------------
-
// From ITK to VTK
// Change the following line to put your filter instead of vtkToItkFilter
+ filter->Update();
itkToVtkFilter->SetInput(filter->GetOutput());
-
// --------------------- Actually execute all filters parts --------------------
itkToVtkFilter->Update();
+ //this->usedThreshold = (double) filter->GetThreshold();
+ QObject::setProperty("Computed threshold:", (double) filter->GetThreshold());
+
// --------------------- Create and return a copy (the filters will be deleted)--
- vtkImageData * resultImage = itkToVtkFilter->GetOutput();
+ vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
+ vtkSmartPointer<vtkImageData> result = vtkSmartPointer<vtkImageData>::New();
int extent[6];
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
// Set CamiTK progress bar back to zero (the processing filter is over)
observer->Reset();
-
- //this->usedThreshold = (double) filter->GetThreshold();
- QObject::setProperty("Computed threshold:", (double) filter->GetThreshold());
+ observer = NULL;
return result;
diff --git a/imaging/actions/itksegmentation/OtsuFilter.h b/imaging/actions/itksegmentation/OtsuFilter.h
index 61dc3aa..1b053cd 100644
--- a/imaging/actions/itksegmentation/OtsuFilter.h
+++ b/imaging/actions/itksegmentation/OtsuFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/OtsuFilter.impl b/imaging/actions/itksegmentation/OtsuFilter.impl
index 8dccdec..ae9eb11 100644
--- a/imaging/actions/itksegmentation/OtsuFilter.impl
+++ b/imaging/actions/itksegmentation/OtsuFilter.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/RegionGrowing.cpp b/imaging/actions/itksegmentation/RegionGrowing.cpp
index 98dbb73..a4de2a2 100644
--- a/imaging/actions/itksegmentation/RegionGrowing.cpp
+++ b/imaging/actions/itksegmentation/RegionGrowing.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -140,7 +140,12 @@ void RegionGrowing::process(ImageComponent * comp) {
vtkSmartPointer<vtkImageData> outputImage = implementProcess (inputImage);
QString newName;
QTextStream(&newName) << comp->getName() << "_segmented";
- new ImageComponent(outputImage, newName);
+
+ ImageComponent* outputComp = new ImageComponent(outputImage, newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
@@ -233,12 +238,11 @@ vtkSmartPointer<vtkImageData> RegionGrowing::itkProcess(vtkSmartPointer<vtkImage
observer->Reset();
// --------------------- Create and return a copy (the filters will be deleted)--
- vtkImageData * resultImage = itkToVtkFilter->GetOutput();
+ vtkSmartPointer<vtkImageData> resultImage = itkToVtkFilter->GetOutput();
int extent[6];
resultImage->GetExtent(extent);
result->SetExtent(extent);
result->DeepCopy(resultImage);
- result->Update();
return result;
}
diff --git a/imaging/actions/itksegmentation/RegionGrowing.h b/imaging/actions/itksegmentation/RegionGrowing.h
index 674ddbf..3f2b8a4 100644
--- a/imaging/actions/itksegmentation/RegionGrowing.h
+++ b/imaging/actions/itksegmentation/RegionGrowing.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/RegionGrowing.impl b/imaging/actions/itksegmentation/RegionGrowing.impl
index 9904e2e..d362d5e 100644
--- a/imaging/actions/itksegmentation/RegionGrowing.impl
+++ b/imaging/actions/itksegmentation/RegionGrowing.impl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/RegionGrowingWidget.cpp b/imaging/actions/itksegmentation/RegionGrowingWidget.cpp
index 55aa3dd..48d99d2 100644
--- a/imaging/actions/itksegmentation/RegionGrowingWidget.cpp
+++ b/imaging/actions/itksegmentation/RegionGrowingWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -41,7 +41,6 @@ RegionGrowingWidget::RegionGrowingWidget(Action * action)
QObject::connect(ui.applyButton, SIGNAL(clicked()), myAction, SLOT(apply()));
-
}
RegionGrowingWidget::~RegionGrowingWidget() {
diff --git a/imaging/actions/itksegmentation/RegionGrowingWidget.h b/imaging/actions/itksegmentation/RegionGrowingWidget.h
index aee0bc3..5469dce 100644
--- a/imaging/actions/itksegmentation/RegionGrowingWidget.h
+++ b/imaging/actions/itksegmentation/RegionGrowingWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/actions/itksegmentation/resources/translate/translate_en.ts b/imaging/actions/itksegmentation/resources/translate/translate_en.ts
index 0660810..3577c74 100644
--- a/imaging/actions/itksegmentation/resources/translate/translate_en.ts
+++ b/imaging/actions/itksegmentation/resources/translate/translate_en.ts
@@ -27,39 +27,39 @@
<context>
<name>OtsuFilter</name>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>Computed threshold:</source>
<translation>Seuil calculé:</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>?</source>
<translation>?</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>The computed threshold found by the Otsu filter.
This property is read only and only updated after applying the action on a component.</source>
<translation>Le seuil calculé trouvé par le filtre Otsu.
La propriété est read only et only updated aprés l'application de l'action sur un component.</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="64"/>
+ <location filename="../../OtsuFilter.cpp" line="67"/>
<source>Inside value</source>
<translation>Valeur intérieure</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="64"/>
+ <location filename="../../OtsuFilter.cpp" line="67"/>
<source>The scalar type value assigned to voxels which have their scalar type BELOW the threshold value.</source>
<translation>La valeur du type scalaire assignée aux voxels qui ont leur type scalaire en dessous de la valeur de seuil.</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="70"/>
+ <location filename="../../OtsuFilter.cpp" line="73"/>
<source>Outside value</source>
<translation>Valeur extérieure</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="70"/>
+ <location filename="../../OtsuFilter.cpp" line="73"/>
<source>The scalar type value assigned to voxels which have their scalar type ABOVE the threshold value.</source>
<translation>La valeur du type scalaire assignée aux voxels qui ont leur type scalaire au-dessus de la valeur de seuil. </translation>
</message>
diff --git a/imaging/actions/itksegmentation/resources/translate/translate_fr.ts b/imaging/actions/itksegmentation/resources/translate/translate_fr.ts
index 0660810..0854c5e 100644
--- a/imaging/actions/itksegmentation/resources/translate/translate_fr.ts
+++ b/imaging/actions/itksegmentation/resources/translate/translate_fr.ts
@@ -1,6 +1,6 @@
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
+<TS version="2.0" language="fr_FR">
<context>
<name>ManualThreshold</name>
<message>
@@ -27,39 +27,39 @@
<context>
<name>OtsuFilter</name>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>Computed threshold:</source>
<translation>Seuil calculé:</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>?</source>
<translation>?</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="59"/>
+ <location filename="../../OtsuFilter.cpp" line="62"/>
<source>The computed threshold found by the Otsu filter.
This property is read only and only updated after applying the action on a component.</source>
<translation>Le seuil calculé trouvé par le filtre Otsu.
La propriété est read only et only updated aprés l'application de l'action sur un component.</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="64"/>
+ <location filename="../../OtsuFilter.cpp" line="67"/>
<source>Inside value</source>
<translation>Valeur intérieure</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="64"/>
+ <location filename="../../OtsuFilter.cpp" line="67"/>
<source>The scalar type value assigned to voxels which have their scalar type BELOW the threshold value.</source>
<translation>La valeur du type scalaire assignée aux voxels qui ont leur type scalaire en dessous de la valeur de seuil.</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="70"/>
+ <location filename="../../OtsuFilter.cpp" line="73"/>
<source>Outside value</source>
<translation>Valeur extérieure</translation>
</message>
<message>
- <location filename="../../OtsuFilter.cpp" line="70"/>
+ <location filename="../../OtsuFilter.cpp" line="73"/>
<source>The scalar type value assigned to voxels which have their scalar type ABOVE the threshold value.</source>
<translation>La valeur du type scalaire assignée aux voxels qui ont leur type scalaire au-dessus de la valeur de seuil. </translation>
</message>
diff --git a/imaging/components/dicom/CMakeLists.txt b/imaging/components/dicom/CMakeLists.txt
index 95baab1..d230712 100644
--- a/imaging/components/dicom/CMakeLists.txt
+++ b/imaging/components/dicom/CMakeLists.txt
@@ -3,5 +3,6 @@ camitk_extension( COMPONENT_EXTENSION
CEP_NAME CEP_IMAGING
DESCRIPTION "This allows one to read a single DICOM image file (.dcm) using the library GDCM 2.2.x"
TEST_APPLICATION ${APPLICATION_TEST_COMPONENT}
+ INSTALL_ALL_HEADERS
)
diff --git a/imaging/components/dicom/DicomComponent.cpp b/imaging/components/dicom/DicomComponent.cpp
index 81c059e..8c20b14 100644
--- a/imaging/components/dicom/DicomComponent.cpp
+++ b/imaging/components/dicom/DicomComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -41,32 +41,46 @@
#include <gdcmScanner.h>
#include <gdcmIPPSorter.h>
-
-
using namespace camitk;
// --------------- Constructor -------------------
DicomComponent::DicomComponent(DicomSerie* dicomSerie) throw(AbortException) : ImageComponent("") {
- std::vector<std::string> stdFileNames = dicomSerie->getStdFileNames();
+ // associated the component's dicom serie
+ serie = dicomSerie;
+ std::vector<std::string> stdFileNames = dicomSerie->getStdFileNames();
// scan files for serie description
gdcm::Scanner scanner;
gdcm::Tag serieDescriptionTag = gdcm::Tag(0x0008, 0x103e);
scanner.AddTag(serieDescriptionTag);
scanner.Scan(stdFileNames);
setName(QString(scanner.GetValue(stdFileNames.at(0).c_str(), serieDescriptionTag)));
-// std::cout << "SERIE name = " << getName().toStdString() << std::endl;
-
- // sort the files according to Patient position ect ...
- gdcm::IPPSorter ippSorter;
- ippSorter.SetComputeZSpacing(true);
- ippSorter.SetZSpacingTolerance(0.1);
- if(!ippSorter.Sort(stdFileNames))
- CAMITK_ERROR("DicomSerieComponent", "DicomSerieComponent", "IPPSorter sorting failed. Try to adjust Z spacing tolerance.")
- vtkSmartPointer<vtkStringArray> fileNamesSorted = vtkSmartPointer<vtkStringArray>::New();
- std::vector< std::string > files = ippSorter.GetFilenames();
-// std::cout << "IPP Sorter has found " << files.size() << " files" << std::endl;
+
+ // Use Image Position Patient filter (IPPSorter) to correctly sort slices according to their Z spacing
+ // Also deduce the actual Z spacing
+ std::vector< std::string > files;
+ double zSpacing = 0.0;
+ if (stdFileNames.size() > 1) {
+ gdcm::IPPSorter ippSorter;
+ ippSorter.SetComputeZSpacing(true);
+ ippSorter.SetZSpacingTolerance(0.001);
+ if(!ippSorter.Sort(stdFileNames)) {
+ CAMITK_ERROR("DicomSerieComponent", "DicomSerieComponent", "IPPSorter sorting failed. Try to adjust Z spacing tolerance.")
+ files = stdFileNames;
+ zSpacing = DicomParser::getZSpacing(files);
+ } else {
+ files = ippSorter.GetFilenames();
+ zSpacing = ippSorter.GetZSpacing();
+ }
+ } else {
+ files = stdFileNames;
+ zSpacing = DicomParser::getZSpacing(files);
+ }
+
+
+ // convert this list as a vtkStringArray
+ vtkSmartPointer<vtkStringArray> fileNamesSorted = vtkSmartPointer<vtkStringArray>::New();
foreach(std::string file, files)
fileNamesSorted->InsertNextValue(file.c_str());
@@ -79,26 +93,29 @@ DicomComponent::DicomComponent(DicomSerie* dicomSerie) throw(AbortException) : I
// TODO read the tag (0018, 5100) Patient position
// create image data corresponding to the component
- imageReader = vtkGDCMImageReader::New();
- imageReader->SetFileNames(fileNamesSorted);
+ imageReader = vtkSmartPointer<vtkGDCMImageReader>::New();
+ if(fileNamesSorted->GetSize() == 1)
+ imageReader->SetFileName(fileNamesSorted->GetValue(0));
+ else
+ imageReader->SetFileNames(fileNamesSorted);
imageReader->Update();
vtkSmartPointer<vtkImageData> rawData = imageReader->GetOutput();
- // TODO Store Image position patient as a CamiTK property?
+ /// TODO Store Image position patient as a CamiTK property?
// Update Z-spacing
// vtkGDCMImageReader missses this information, see: http://gdcm.sourceforge.net/2.4/html/classvtkGDCMImageReader.html#details
+ // Use the value found from IPPSorter or DicomParser::GetZSpacing()
double *spacing = imageReader->GetDataSpacing();
- double ippZSpacing = ippSorter.GetZSpacing();
- if (ippZSpacing == 0) {
- // if IPPSorter returned 0, it means that its input parameters were wrong, see: http://gdcm.sourceforge.net/2.4/html/classgdcm_1_1IPPSorter.html#aaef7af132da723719c52be5f8d3cb21d
- CAMITK_WARNING("DicomSerieComponent", "DicomSerieComponent", "IPPSorter Z spacing computation failed, try to adjust the tolerance. Setting it back to 1")
- ippZSpacing = 1;
- }
- vtkImageChangeInformation *imageInfoChanger = vtkImageChangeInformation::New();
- imageInfoChanger->SetInput(rawData); //translatedData);
-// std::cout << "spacing found = (" << spacing[0] << ", " << spacing[1] << ", " << ippZSpacing << ")" << std::endl;
- imageInfoChanger->SetOutputSpacing(spacing[0], spacing[1], ippZSpacing);
+
+ // Update Z Spacing using a VTK pipeline
+ vtkSmartPointer<vtkImageChangeInformation> imageInfoChanger = vtkSmartPointer<vtkImageChangeInformation>::New();
+ imageInfoChanger->SetInputData(rawData); //translatedData);
+
+ /// DEBUG
+ // std::cout << "spacing found = (" << spacing[0] << ", " << spacing[1] << ", " << zSpacing << ")" << std::endl;
+
+ imageInfoChanger->SetOutputSpacing(spacing[0], spacing[1], zSpacing);
imageInfoChanger->Update();
// Flip all actors in the Y axis
@@ -113,34 +130,43 @@ DicomComponent::DicomComponent(DicomSerie* dicomSerie) throw(AbortException) : I
flipYFilter->SetInputConnection(imageInfoChanger->GetOutputPort());
flipYFilter->Update();
- // Retrieve image position patient information
-
+ /// TODO Retrieve image position patient information
// put back to the origin
vtkSmartPointer<vtkImageData> image = flipYFilter->GetOutput();
setImageData(image, false, orientation);
// Wait for the LUT update in CamiTK and / or support for color image
- // updateLUT();
+ if(getLut()) // sometimes ImageComponent happens not to have a lut, strange behaviour
+ updateLUT();
+ else
+ CAMITK_WARNING("DicomComponent", "Constructor", "Image's lut is null.");
}
// --------------- destructor -------------------
DicomComponent::~DicomComponent() {
-
+ if(serie)
+ delete serie;
+// if(imageReader)
+// imageReader->Delete();
}
// --------------- updateLUT -------------------
void DicomComponent::updateLUT() {
// Update LUT
// Initialize our lut with vtkGDCMImageReader information found, as our LUT needs repair ...
- std::cout << "DicomSerieComponent::updateLUT >> ";
+// std::cout << "DicomSerieComponent::updateLUT >> ";
double range[2] = {0.0, 0.0};
imageReader->GetOutput()->GetScalarRange(range);
getLut()->SetRange(range); // we need to set up range and table values
+ getLut()->SetLevel((range[1] + range[0]) / 2);
getLut()->SetNumberOfTableValues(abs(range[0]) + abs(range[1]));
- std::cout << "UPDATE DONE" << std::endl;
+
+ /// DEBUG
+ // std::cout << "updateLut >> Range = ( " << range[0] << ", " << range[1] << ")" << std::endl;
+ // std::cout << "UPDATE DONE" << std::endl;
}
// --------------- readDirectCosinesAngle -------------------
@@ -150,7 +176,18 @@ camitk::ImageOrientationHelper::PossibleImageOrientations DicomComponent::readDi
gdcm::Scanner scanner;
gdcm::Tag iopTag = gdcm::Tag(0x0020, 0x0037);
scanner.AddTag(iopTag);
- scanner.Scan(fileNames);
+ if(!scanner.Scan(fileNames)) // Definitively, scan should never failed, since DicomParser::parseDirectory() has already filter files.
+ CAMITK_ERROR("DicomComponent", "readDirectCosinesAngle", "Scan failed looking for tag (0x0020, 0x0037) Image Orientation Patient");
+
+ // Check value tag exists
+ gdcm::Scanner::TagToValue const &ttv = scanner.GetMapping(fileNames[0].c_str());
+ gdcm::Scanner::TagToValue::const_iterator it = ttv.find(iopTag);
+ if(!(it != ttv.end())) {
+ CAMITK_WARNING("DicomComponent", "readDirectCosinesAngle","No tag (0x0020, 0x0037) Image Orientation Patient found on image " + fileNames[0]);
+ return ImageOrientationHelper::UNKNOWN;
+ }
+
+ // Then we know it exists
std::string value = scanner.GetValue(fileNames[0].c_str(), iopTag);
// convert the string into the appropriate couple of cosine vectors
diff --git a/imaging/components/dicom/DicomComponent.h b/imaging/components/dicom/DicomComponent.h
index 583825c..b9ad22c 100644
--- a/imaging/components/dicom/DicomComponent.h
+++ b/imaging/components/dicom/DicomComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,8 +32,9 @@
class DicomSerie;
class vtkGDCMImageReader;
+
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
* @brief
* DICOM Component represents a volumic image of a DICOM SERIE with its corresponding tags information (as CamiTK properties).
@@ -47,11 +48,18 @@ class DicomComponent : public camitk::ImageComponent {
public:
/**
- * Create a new Component that handles DICOM image
- * @param path: the path to a .dcm image file.
+ * Create a new Component that handles DICOM images
+ * @param pointor to the associated DicomSerie
**/
DicomComponent(DicomSerie*) throw(camitk::AbortException);
+ /**
+ * @brief Get the DicomSerie associated to this component.
+ */
+ DicomSerie* getSerie() {
+ return serie;
+ }
+
/// Default Destructor
virtual ~DicomComponent();
@@ -61,7 +69,7 @@ private:
*
* @note This class allows to make the bridge between GDCM and CamiTK.
*/
- vtkGDCMImageReader* imageReader;
+ vtkSmartPointer<vtkGDCMImageReader> imageReader;
/**
* @brief Update the LUT of the image by reading the good information from the DICOM headers.
@@ -83,6 +91,11 @@ private:
* @return the rounded cosine value -1, 0 or 1
*/
double roundCosine(const double & value) const;
+
+ /**
+ * @brief The associated DicomSerie to this component.
+ */
+ DicomSerie* serie;
};
#endif // DICOMCOMPONENT_H
diff --git a/imaging/components/dicom/DicomComponentExtension.cpp b/imaging/components/dicom/DicomComponentExtension.cpp
index c2655c8..4241f03 100644
--- a/imaging/components/dicom/DicomComponentExtension.cpp
+++ b/imaging/components/dicom/DicomComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,9 +43,6 @@
using namespace camitk;
-// --------------- Extension Declaration -------------------
-Q_EXPORT_PLUGIN2(dicomcomponentextension, DicomComponentExtension)
-
// --------------- GetFileExtensions -------------------
QStringList DicomComponentExtension::getFileExtensions() const {
QStringList ext;
@@ -87,7 +84,8 @@ Component * DicomComponentExtension::open(const QString & path) throw (AbortExce
(serie->getSerieName() == entry->getSerieName()) ) {
lastOpenedComponent = new DicomComponent(serie);
break;
- }
+ } else
+ delete serie;
}
}
diff --git a/imaging/components/dicom/DicomComponentExtension.h b/imaging/components/dicom/DicomComponentExtension.h
index d726346..15308f4 100644
--- a/imaging/components/dicom/DicomComponentExtension.h
+++ b/imaging/components/dicom/DicomComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,9 +30,8 @@
#include<ComponentExtension.h>
-namespace camitk
-{
- class Component;
+namespace camitk {
+class Component;
}
class DicomDialog;
@@ -42,7 +41,7 @@ class DicomDialogEntry;
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
* @brief
* DICOM image Component manager.
@@ -53,6 +52,7 @@ class DicomDialogEntry;
class DicomComponentExtension : public camitk::ComponentExtension {
Q_OBJECT
Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.imaging.component.dicom")
public:
/// Constructor
@@ -102,7 +102,6 @@ private:
/// The different Dicom SERIE parsed
QList<DicomSerie*> serieParsed;
-
/// The serie dialog entries representation in the VIEW
QList<DicomDialogEntry*> serieDialogEntries;
diff --git a/imaging/components/dicom/DicomDialog.cpp b/imaging/components/dicom/DicomDialog.cpp
index e6a32c9..0b33d01 100644
--- a/imaging/components/dicom/DicomDialog.cpp
+++ b/imaging/components/dicom/DicomDialog.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicom/DicomDialog.h b/imaging/components/dicom/DicomDialog.h
index 8e4e7e3..bc7e543 100644
--- a/imaging/components/dicom/DicomDialog.h
+++ b/imaging/components/dicom/DicomDialog.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,7 +37,7 @@ class DicomDialogEntry;
#include <QList>
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
* @brief
* Dialog class to select the DICOM series to open, using a GUI.
diff --git a/imaging/components/dicom/DicomDialogEntry.cpp b/imaging/components/dicom/DicomDialogEntry.cpp
index 2a9e948..844be40 100644
--- a/imaging/components/dicom/DicomDialogEntry.cpp
+++ b/imaging/components/dicom/DicomDialogEntry.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicom/DicomDialogEntry.h b/imaging/components/dicom/DicomDialogEntry.h
index 79c8fb8..ae822a5 100644
--- a/imaging/components/dicom/DicomDialogEntry.h
+++ b/imaging/components/dicom/DicomDialogEntry.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,7 +31,7 @@
#include <QDate>
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
* @brief This class represents a line in the Dialog box of the DICOM series the user is prompted to open.
*
diff --git a/imaging/components/dicom/DicomParser.cpp b/imaging/components/dicom/DicomParser.cpp
index 7a49f60..c99e5be 100644
--- a/imaging/components/dicom/DicomParser.cpp
+++ b/imaging/components/dicom/DicomParser.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,10 +24,12 @@
****************************************************************************/
// CamiTK includes
#include "DicomParser.h"
+#include <Log.h>
// GDCM includes
#include <gdcmScanner.h>
#include <gdcmIPPSorter.h>
+#include <gdcmImageReader.h>
// --------------- parseDirectory -------------------
@@ -40,12 +42,40 @@ QList<DicomSerie*> DicomParser::parseDirectory(const QString & directory) {
dir.Load(directory.toStdString().c_str(), true);
const std::vector< std::string > & fileNames = dir.GetFilenames();
+ // Filter files to retrieve only DICOM files featuring an image (PixelData dataset)
+ // Inspired for GDCM scanner basic example
+ // see : http://gdcm.sourceforge.net/html/SimpleScanner_8cxx-example.html#_a7
+ std::vector< std::string > imageFileNames;
+
+ gdcm::Scanner dicomImageScanner;
+ const gdcm::Tag tagPixelData(0x7fe0, 0x0010);
+ dicomImageScanner.AddTag(tagPixelData);
+ dicomImageScanner.Scan(fileNames);
+
+ CAMITK_DEBUG("DicomParser", "parseDirectory", "Parsing files for DICOM image files");
+ foreach(std::string file, dicomImageScanner.GetFilenames()) {
+ // 1st check the file is a valid DICOM file
+ if(dicomImageScanner.IsKey(file.c_str())) {
+ // 2nd check the dicom file is is an image file
+ gdcm::Scanner::TagToValue const &ttv = dicomImageScanner.GetMapping(file.c_str());
+ gdcm::Scanner::TagToValue::const_iterator it = ttv.find( tagPixelData );
+ if( it != ttv.end() ) {
+ CAMITK_DEBUG("DicomParser", "parseDirectory", file +" is a DICOM image file");
+ imageFileNames.push_back(file);
+ } else
+ CAMITK_DEBUG("DicomParser", "parseDirectory", file +" is a DICOM file WITHOUT PixelData information");
+ } else
+ CAMITK_DEBUG("DicomParser", "parseDirectory", file +" is not a valid DICOM file");
+ }
+
// filter files per image and STUDY
gdcm::Tag studyUIDTag = gdcm::Tag(0x0020,0x000d);
// Note : we can put an observer for load bar
gdcm::Scanner studyScanner;
studyScanner.AddTag(studyUIDTag);
- studyScanner.Scan(fileNames);
+
+ /// DEBUG
+ studyScanner.Scan(imageFileNames);
// retrieve all the studies results
const std::set< std::string > studyValues = studyScanner.GetValues();
@@ -65,32 +95,21 @@ QList<DicomSerie*> DicomParser::parseDirectory(const QString & directory) {
// get file associated with this serie
std::vector< std::string > serieFileNames = seriesScanner.GetAllFilenamesFromTagToValue(serieUIDTag, serieName.c_str());
- // This filter aims at removing volumic images containing only a few images, for doctors TOPO for instance
- // if ippsorter algorithm returns 0, it means it hasn't been able to sort the files according to their Z spacing
- // It could come from a bad z spacing tolerance or the image files have no z spacing
- gdcm::IPPSorter ippsorter;
- ippsorter.SetComputeZSpacing(true);
- ippsorter.SetZSpacingTolerance(0.01);
- ippsorter.Sort(serieFileNames);
- serieFileNames = ippsorter.GetFilenames();
-
// build a DicomSerie object corresponding to what we have found
if(serieFileNames.size() > 0) {
- DicomSerie* crtSerie = new DicomSerie();
- crtSerie->setAcquisitionDate(DicomParser::getAcquisitionDate(serieFileNames));
- crtSerie->setAcquisitionTime(DicomParser::getAcquisitionTime(serieFileNames));
- crtSerie->setStudyName(DicomParser::getStudyName(serieFileNames));
- crtSerie->setSerieName(DicomParser::getSerieName(serieFileNames));
- crtSerie->setSerieDescription(DicomParser::getSerieDescription(serieFileNames));
- crtSerie->setPatientName(DicomParser::getPatientName(serieFileNames));
- crtSerie->setStdFileNames(serieFileNames);
- crtSerie->setFileNames(stdListOfStringToQt(serieFileNames));
-
- dicomSeries.append(crtSerie);
+ DicomSerie* dicomSerie = new DicomSerie();
+ dicomSerie->setAcquisitionDate(DicomParser::getAcquisitionDate(serieFileNames));
+ dicomSerie->setAcquisitionTime(DicomParser::getAcquisitionTime(serieFileNames));
+ dicomSerie->setStudyName(DicomParser::getStudyName(serieFileNames));
+ dicomSerie->setSerieName(DicomParser::getSerieName(serieFileNames));
+ dicomSerie->setSerieDescription(DicomParser::getSerieDescription(serieFileNames));
+ dicomSerie->setPatientName(DicomParser::getPatientName(serieFileNames));
+ dicomSerie->setStdFileNames(serieFileNames);
+ dicomSerie->setFileNames(stdListOfStringToQt(serieFileNames));
+
+ dicomSeries.append(dicomSerie);
}
}
-
-
}
return dicomSeries;
@@ -192,6 +211,21 @@ std::vector< std::string > DicomParser::qtListOfStringToStd(const QList<QString>
return outputFileNames;
}
+// --------------- getZSpacing -------------------
+double DicomParser::getZSpacing(const std::vector<std::string> & serieFileNames) {
+ gdcm::Scanner scanner;
+ gdcm::Tag zSpacingTag = gdcm::Tag(0x0018, 0x0088);
+ scanner.AddTag(zSpacingTag);
+ scanner.Scan(serieFileNames);
+
+ std::string file = serieFileNames.at(0);
+ const char* value = scanner.GetValue(file.c_str(), zSpacingTag);
+ if(!value) {
+ CAMITK_ERROR("DicomParser", "getZSpacing", "No Z spacing found on image: " + serieFileNames.at(0));
+ return 1.0;
+ }
+ return atof(value);
+}
diff --git a/imaging/components/dicom/DicomParser.h b/imaging/components/dicom/DicomParser.h
index 59fe9bd..f146aae 100644
--- a/imaging/components/dicom/DicomParser.h
+++ b/imaging/components/dicom/DicomParser.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,9 +40,9 @@
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
- * @brief DicomParser allows one to parse a directory DICOM files looking for studies and series
+ * @brief DicomParser allows one to parse a directory of DICOM files looking for studies and series
*
* @note This class is part of the model (in the MVP pattern) of the DICOM COMPONENT
*
@@ -63,6 +63,13 @@ public:
*/
static QList<DicomSerie*> parseDirectory(const QString & directory);
+ /**
+ * @brief Retrieve the DICOM image file Z spacing attribute (commonly known as spacing between slices)
+ * @param serieFileNames the input DICOM image images to retrieve the Z spacing attribute from.
+ * @return the Z spacing value.
+ */
+ static double getZSpacing(const std::vector<std::string> & serieFileNames);
+
private:
/**
* @brief Convert a simple std list of string into a QList of QString.
@@ -120,8 +127,6 @@ private:
*/
static QString getStudyName(const std::vector<std::string> & serieFileNames);
-
-
};
#endif // DICOMPARSER_H
diff --git a/imaging/components/dicom/DicomSerie.cpp b/imaging/components/dicom/DicomSerie.cpp
index b703bba..ed57e90 100644
--- a/imaging/components/dicom/DicomSerie.cpp
+++ b/imaging/components/dicom/DicomSerie.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicom/DicomSerie.h b/imaging/components/dicom/DicomSerie.h
index 01d816d..c4a8200 100644
--- a/imaging/components/dicom/DicomSerie.h
+++ b/imaging/components/dicom/DicomSerie.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,13 +35,15 @@
/**
- * @ingroup group_cepimaging_components_dicomimage
+ * @ingroup group_cepimaging_components_dicom
*
* @brief DicomSerie is a CamiTK high level class to represent a DICOM SERIE
* This class encapsulates GDCM objects to handle a DICOM SERIE
*
* @note This class is part of the model (in the MVP pattern) of the DICOM COMPONENT
- * @note This class does NOT represent a CamiTK Component (@see DicomComponent)
+ * @note This class does NOT represent a CamiTK Component.
+ *
+ * @see DicomComponent
*
*/
class DicomSerie {
@@ -103,7 +105,6 @@ private:
/// The image file names associated to this SERIE (std list, for GDCM API)
std::vector<std::string> stdFileNames;
-
};
#endif // DICOMSERIE_H
diff --git a/imaging/components/dicomitk/DicomItkComponent.cpp b/imaging/components/dicomitk/DicomItkComponent.cpp
index a9639fe..811e618 100644
--- a/imaging/components/dicomitk/DicomItkComponent.cpp
+++ b/imaging/components/dicomitk/DicomItkComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomitk/DicomItkComponent.h b/imaging/components/dicomitk/DicomItkComponent.h
index 783cb02..8374977 100644
--- a/imaging/components/dicomitk/DicomItkComponent.h
+++ b/imaging/components/dicomitk/DicomItkComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -34,7 +34,6 @@
typedef itk::FilenamesContainer FilenamesContainerType;
/**
- * @ingroup group_cepimaging_components_dicom
*
* @brief
* This class manage Dicom volume images stored in directories.
diff --git a/imaging/components/dicomitk/DicomItkComponentExtension.cpp b/imaging/components/dicomitk/DicomItkComponentExtension.cpp
index 2ab5a7d..defaef5 100644
--- a/imaging/components/dicomitk/DicomItkComponentExtension.cpp
+++ b/imaging/components/dicomitk/DicomItkComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomitk/DicomItkComponentExtension.h b/imaging/components/dicomitk/DicomItkComponentExtension.h
index 25d1401..c9b57bb 100644
--- a/imaging/components/dicomitk/DicomItkComponentExtension.h
+++ b/imaging/components/dicomitk/DicomItkComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -89,7 +89,6 @@ typedef struct {
} CompareInfo;
/**
- * @ingroup group_cepimaging_components_dicom
*
* @brief
* This allows you to manipulate a limited number of dicom images.
diff --git a/imaging/components/dicomtree/DicomTreeComponentExtension.cpp b/imaging/components/dicomtree/DicomTreeComponentExtension.cpp
index 6e2c9e6..e0887dc 100644
--- a/imaging/components/dicomtree/DicomTreeComponentExtension.cpp
+++ b/imaging/components/dicomtree/DicomTreeComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomtree/DicomTreeComponentExtension.h b/imaging/components/dicomtree/DicomTreeComponentExtension.h
index 33ea4ce..31d5351 100644
--- a/imaging/components/dicomtree/DicomTreeComponentExtension.h
+++ b/imaging/components/dicomtree/DicomTreeComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,7 +31,6 @@
#include<ComponentExtension.h>
/**
- * @ingroup group_cepimaging_components_dicomdirectory
*
* @brief
* Manager for handling DICOM directories which store DICOM images.
diff --git a/imaging/components/dicomtree/DicomTreeDirectoryComponent.cpp b/imaging/components/dicomtree/DicomTreeDirectoryComponent.cpp
index 8a6ea12..1f4f262 100644
--- a/imaging/components/dicomtree/DicomTreeDirectoryComponent.cpp
+++ b/imaging/components/dicomtree/DicomTreeDirectoryComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomtree/DicomTreeDirectoryComponent.h b/imaging/components/dicomtree/DicomTreeDirectoryComponent.h
index 9abf1ff..182080e 100644
--- a/imaging/components/dicomtree/DicomTreeDirectoryComponent.h
+++ b/imaging/components/dicomtree/DicomTreeDirectoryComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,6 @@
#include <Component.h>
/**
- * @ingroup group_cepimaging_components_dicomdirectory
*
* @brief
* This component allows you to read DICOM images files from a directory.
diff --git a/imaging/components/dicomtree/DicomTreeSerieComponent.cpp b/imaging/components/dicomtree/DicomTreeSerieComponent.cpp
index 6f75c5f..2c81742 100644
--- a/imaging/components/dicomtree/DicomTreeSerieComponent.cpp
+++ b/imaging/components/dicomtree/DicomTreeSerieComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomtree/DicomTreeSerieComponent.h b/imaging/components/dicomtree/DicomTreeSerieComponent.h
index 95811fb..1a4b213 100644
--- a/imaging/components/dicomtree/DicomTreeSerieComponent.h
+++ b/imaging/components/dicomtree/DicomTreeSerieComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,6 @@ class ImageOrientationHelper;
class vtkGDCMImageReader;
/**
- * @ingroup group_cepimaging_components_dicomdirectory
*
* @brief
* This component allows you to read DICOM images files of a single SERIE of a given STUDY
diff --git a/imaging/components/dicomtree/DicomTreeStudyComponent.cpp b/imaging/components/dicomtree/DicomTreeStudyComponent.cpp
index d09de2b..d2adcc1 100644
--- a/imaging/components/dicomtree/DicomTreeStudyComponent.cpp
+++ b/imaging/components/dicomtree/DicomTreeStudyComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/dicomtree/DicomTreeStudyComponent.h b/imaging/components/dicomtree/DicomTreeStudyComponent.h
index 0a0226e..27c5ec7 100644
--- a/imaging/components/dicomtree/DicomTreeStudyComponent.h
+++ b/imaging/components/dicomtree/DicomTreeStudyComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,6 @@ class DicomTreeSerieComponent;
/**
- * @ingroup group_cepimaging_components_dicomdirectory
*
* @brief
* This component allows you to read DICOM images files of several SERIES of a same STUDY
diff --git a/imaging/components/itkimage/ItkImageComponent.cpp b/imaging/components/itkimage/ItkImageComponent.cpp
index 4a3d6bd..9b5bd28 100644
--- a/imaging/components/itkimage/ItkImageComponent.cpp
+++ b/imaging/components/itkimage/ItkImageComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -112,7 +112,6 @@ vtkSmartPointer<vtkImageData> ItkImageComponent::readVolume(const QString& filen
newImage->DeepCopy(oldPointer);
// set the original slices. Other orientation are build when/if required only.
- newImage->Update();
} catch ( itk::ExceptionObject & err ) {
std::cerr << "ExceptionObject caught !" << std::endl;
std::cerr << err << std::endl;
diff --git a/imaging/components/itkimage/ItkImageComponent.h b/imaging/components/itkimage/ItkImageComponent.h
index 0a5a6e9..16693a7 100644
--- a/imaging/components/itkimage/ItkImageComponent.h
+++ b/imaging/components/itkimage/ItkImageComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/imaging/components/itkimage/ItkImageComponentExtension.cpp b/imaging/components/itkimage/ItkImageComponentExtension.cpp
index d99c655..ad2cfac 100644
--- a/imaging/components/itkimage/ItkImageComponentExtension.cpp
+++ b/imaging/components/itkimage/ItkImageComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -34,10 +34,6 @@ using namespace camitk;
//-- Qt
#include <QMessageBox>
-
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2(itkimage, ItkImageComponentExtension);
-
// --------------- getName -------------------
QString ItkImageComponentExtension::getName() const {
return "ItkImages Component";
diff --git a/imaging/components/itkimage/ItkImageComponentExtension.h b/imaging/components/itkimage/ItkImageComponentExtension.h
index 42448f1..1def11a 100644
--- a/imaging/components/itkimage/ItkImageComponentExtension.h
+++ b/imaging/components/itkimage/ItkImageComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,11 +38,12 @@
*/
class ItkImageComponentExtension : public camitk::ImageComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.imaging.component.itkimage")
public:
/// the constructor (do nothing really)
- ItkImageComponentExtension() : ImageComponentExtension() {};
+ ItkImageComponentExtension() : ImageComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/imaging/doc/groups.h b/imaging/doc/groups.h
index 2c3fdb4..db94bda 100644
--- a/imaging/doc/groups.h
+++ b/imaging/doc/groups.h
@@ -34,22 +34,9 @@
* Specific @ref camitk::ImageComponent "ImageComponent"
* The following @ref camitk::ImageComponent "ImageComponent" are derived classes, useful to handle specific type of volumic image.
*
- *
* @defgroup group_cepimaging_components_dicom DICOM
* @ingroup group_cepimaging_components
- * Old DICOM @ref camitk::Component "Component" to handle DICOM image opened from a directory using ITK.
- *
- *
- * @defgroup group_cepimaging_components_dicomdirectory DICOM directory
- * @ingroup group_cepimaging_components
- * DICOM @ref camitk::Component "Component" to handle a bunch of DICOM images stored in a directory.
- * @note This component uses the external component GDCM.
- *
- *
- * @defgroup group_cepimaging_components_dicomimage DICOM Image
- * @ingroup group_cepimaging_components
- * DICOM @ref camitk::Component "Component" to handle a single DICOM image.
- * @note Typically, the file extension used for single DICOM image is .dcm. This component uses the external component GDCM.
+ * Old DICOM @ref camitk::Component "Component" to handle DICOM image opened from a directory using GDCM.
*
*
* @defgroup group_cepimaging_components_itkimage ITK Image
diff --git a/modeling/CMakeLists.txt b/modeling/CMakeLists.txt
index 2665123..955f39c 100644
--- a/modeling/CMakeLists.txt
+++ b/modeling/CMakeLists.txt
@@ -1,13 +1,24 @@
#--------------------------------------------
# Modeling extension project
#--------------------------------------------
-cmake_minimum_required(VERSION 2.6)
-
# Mini find CamiTK inside SDK
set(CAMITK_DIR ${CMAKE_BINARY_DIR})
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CAMITK_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cmake)
include(CamiTKConfig)
+# Sofa support is defined in separate files
+include(SofaSupport.cmake)
+# uncomment the following line for old versions of sofa: at your own risk!
+#include(SofaLegacySupport.cmake)
+
+# For packaging on windows, dash cannot be used as separator
+# => replace it by underscore
+if (PACKAGING_NSIS)
+ set(TARGET_NAME_SEPARATOR _)
+else()
+ set(TARGET_NAME_SEPARATOR -)
+endif()
+
camitk_extension_project(NAME "modeling"
CONTACT "Celine.Fouard at imag.fr,Emmanuel.Promayon at imag.fr"
DESCRIPTION "The modeling CamiTK Extension Project contains all the action and component extensions that are useful for biomechanical processing. It provides the LML, PML and MML libraries, and the related components and actions."
diff --git a/modeling/COPYRIGHT b/modeling/COPYRIGHT
index 2c6300a..f42d7b0 100644
--- a/modeling/COPYRIGHT
+++ b/modeling/COPYRIGHT
@@ -1,7 +1,7 @@
$CAMITK_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/modeling/SofaLegacySupport.cmake b/modeling/SofaLegacySupport.cmake
new file mode 100644
index 0000000..f33339f
--- /dev/null
+++ b/modeling/SofaLegacySupport.cmake
@@ -0,0 +1,204 @@
+# Old Legacy support for Sofa, not supported
+
+# "find" SOFA (you need to have a SOFA_BUILD_DIR environment variable
+# or to define it manually during configuration process)
+set(SOFA_BUILD_DIR $ENV{SOFA_BUILD_DIR} CACHE PATH "Where to find SOFA (for SOFA svn, this is the build directory)")
+if(EXISTS ${SOFA_BUILD_DIR})
+ # Compile SOFA .scn import filter? (ON or OFF)
+ option(SOFA_SUPPORT "Compile SOFA Simulator?" ON)
+endif(EXISTS ${SOFA_BUILD_DIR})
+
+# sofa settings
+# previous versions of Sofa
+# support for any other version of SOFA is not guaranted.
+# Previous versions of Sofa were supported in previous version of CamiTK:
+# - sofa svn version (or initial git version up to november 2014) -> CamiTK 3.4.0
+# - sofa 1.0 RC1 from the sofa website -> CamiTK 3.x up to 3.3
+# - the old sofa beta 4 from the debian repository -> CamiTK 2.x
+if(SOFA_SUPPORT)
+ # unsupported previous versions
+ # use at your own risk, no guarantee what so ever!
+ add_definitions(-DSOFA_SUPPORT)
+ add_definitions(-DSOFA_PATH="${SOFA_BUILD_DIR}")
+
+ option(MML_SOFA_SVN "Set to ON (default) if SOFA svn build dir is available in ${SOFA_BUILD_DIR}" ON)
+ option(MML_SOFA_1_0_RC1 "Set to ON if SOFA 1.0 RC1 is available in ${SOFA_BUILD_DIR}" OFF)
+ option(MML_SOFA_1_0_BETA4 "Set to if SOFA 1.0 beta 4 is available in ${SOFA_BUILD_DIR}" OFF)
+
+ # compilation flag
+ if (MML_SOFA_SVN)
+ # include and everything else needed => path to source tree needed
+ # automatically get the value of CMAKE_SOURCE_DIR in the build directory toplevel Makefile
+ # 1. Get the correct line from the CMakeCache file
+ file(STRINGS ${SOFA_BUILD_DIR}/CMakeCache.txt SOFA_SOURCE_DIR_LINE REGEX "^Sofa_SOURCE_DIR:STATIC=(.*)$")
+ # 2. Use a regex to extract the path from the line
+ string(REGEX REPLACE "^Sofa_SOURCE_DIR:STATIC=(.*)$" "\\1" SOFA_SOURCE_DIR "${SOFA_SOURCE_DIR_LINE}")
+ message("Detected sofa source directory is ${SOFA_SOURCE_DIR}")
+
+ add_definitions(-DSOFA_SVN)
+ endif()
+
+ if (MML_SOFA_1_0_RC1)
+ add_definitions(-DSOFA_1_0_RC1)
+ endif()
+
+ if (MML_SOFA_1_0_BETA4)
+ add_definitions(-DSOFA_1_0_BETA4)
+ endif()
+
+ # library settings depends on the sofa version
+
+ if (MML_SOFA_SVN)
+ set(SOFA_LIBS
+ # SOFA_LIB_NAME
+ #SofaGui
+ #SofaTree
+ SofaCore
+ SofaGuiQt
+ SofaHelper
+ SofaGuiGlut
+ SofaGuiMain
+ #SofaModeler
+ #SofaSimulation
+ #SofaObjectCreator
+ SofaDefaultType
+ #SofaGraph
+
+ # SOFA_LIB_COMPONENT_NAME
+ #SofaComponent
+ #SofaComponentDev
+ SofaComponentBase
+ SofaComponentMisc
+ SofaComponentCommon
+ SofaComponentGeneral
+ #SofaComponentMiscDev
+ SofaComponentAdvanced
+ #SofaComponentAdvancedDev
+
+ # SOFA_LIB_BASE_NAME
+ SofaBaseAnimationLoop
+ SofaBaseCollision
+ SofaBaseLinearSolver
+ SofaBaseMechanics
+ SofaBaseTopology
+ SofaBaseVisual
+
+ # SOFA_LIB_GENERAL_NAME
+ SofaBoundaryCondition
+ SofaConstraint
+ SofaDenseSolver
+ SofaEngine
+ SofaExporter
+ SofaGraphComponent
+ SofaOpenglVisual
+ SofaPreconditioner
+ SofaTopologyMapping
+ SofaUserInteraction
+ SofaValidation
+ SofaHaptics
+
+ # SOFA_LIB_ADVANCED_NAME
+ #SofaAdvancedConstraint
+ #SofaAdvancedFem
+ #SofaAdvancedInteraction
+ SofaEigen2Solver
+ SofaEulerianFluid
+ #SofaMjedFem
+ SofaNonUniformFem
+ #SofaNonUniformFemDev
+ SofaSphFluid
+ SofaVolumetricData
+
+ # SOFA_LIB_MISC_NAME
+ SofaMisc
+ SofaMiscCollision
+ #SofaMiscCollisionDev
+ SofaMiscFem
+ #SofaMiscDev
+ #SofaMiscFemDev
+ SofaMiscForceField
+ #SofaMiscForcefieldDev
+ SofaMiscMapping
+ #SofaMiscMappingDev
+ SofaMiscSolver
+ #SofaMiscSolverDev
+ SofaMiscTopology
+ #SofaMiscTopologyDev
+ SofaMiscEngine
+ )
+ set(SOFA_LIB_DIR ${SOFA_BUILD_DIR}/lib)
+ endif()
+
+ if (MML_SOFA_1_0_RC1)
+ # old sofa RC1 from the tarballs
+ if(WIN32)
+ set(SOFA_LIB_DIR ${SOFA_BUILD_DIR}/lib/win32/ReleaseVC9 ${SOFA_BUILD_DIR}/lib/win32 ${SOFA_BUILD_DIR}/lib ${SOFA_BUILD_DIR}/bin )
+ else()
+ set(SOFA_LIB_DIR ${SOFA_BUILD_DIR}/lib/linux ${SOFA_BUILD_DIR}/lib)
+ endif()
+
+ # set dependencies
+ set(SOFA_LIBS sofacore #sofa_component_dev
+ #sofa_component_advanced_dev sofa_component_misc_dev
+ sofa_component
+ #sofa_non_uniform_fem_dev
+ #sofa_advanced_fem
+ #sofa_mjed_fem
+ #sofa_advanced_constraint
+ #sofa_advanced_interaction
+ #sofa_misc_topology_dev
+ #sofa_misc_mapping_dev
+ #sofa_misc_forcefield_dev
+ #sofa_misc_fem_dev
+ #sofa_misc_collision_dev
+ #sofa_misc_solver_dev
+ #sofa_misc_dev
+ sofa_exporter sofa_loader sofa_misc_forcefield sofa_component_base sofa_component_common sofa_component_general sofa_component_advanced sofa_component_misc sofahelper sofa_engine sofa_sph_fluid sofa_non_uniform_fem sofa_base_topology sofa_boundary_condition sofa_haptics sofa_constraint sofatree sofa_base_linear_solver sofa_implicit_ode_solver sofa_simple_fem sofa_topology_mapping sofa_user_interaction sofa_misc_collision sofa_preconditioner sofa_misc_topology sofa_mesh_collision [...]
+ #sofabgl
+ sofa_base_collision sofa_deformable sofa_graph_component sofa_base_mechanics sofa_rigid sofa_base_animation_loop sofa_object_interaction sofa_explicit_ode_solver sofa_eigen2_solver sofa_validation sofa_dense_solver sofa_eulerian_fluid sofa_misc_mapping sofa_misc_fem sofa_misc_engine sofa_misc_solver sofa_misc
+ sofa_base_visual #-lnewmat -lGLEW -lpng
+ sofasimulation #-lminiFlowVR
+ sofacore #-ltinyxml
+ sofadefaulttype #-lQt3Support -lQtOpenGL -lQtGui -lQtCore -lGLU -lGL -lpthread
+ sofamodeler
+ )
+ endif()
+
+ if(MML_SOFA_1_0_BETA4)
+ # Sofa1.0beta4 from the package
+ set(SOFA_LIBS sofacore sofacomponent sofasimulation sofatree sofahelper sofadefaulttype)
+ endif()
+
+ # add debug suffix (TODO update for SOFA SVN)
+ if(WIN32)
+ if( CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "RelWithDebInfo" )
+ set(SOFA_LIBS_WIN32 ${SOFA_LIBS})
+ set(SOFA_LIBS)
+ if(MML_SOFA_1_0_RC1)
+ set(SOFA_VERSION_SUFFIX "_1_0d")
+ endif()
+ if(MML_SOFA_1_0_BETA4)
+ set(SOFA_VERSION_SUFFIX "d")
+ endif()
+ foreach(SOFA_LIB ${SOFA_LIBS_WIN32})
+ set(SOFA_LIBS ${SOFA_LIBS} ${SOFA_LIB}${SOFA_VERSION_SUFFIX})
+ endforeach()
+ endif()
+ endif()
+
+ # SOFA include directories
+ # use sofa source directory for sofa svn version
+ if (MML_SOFA_SVN)
+ set(SOFA_INCLUDE_DIR ${SOFA_SOURCE_DIR}/include ${SOFA_SOURCE_DIR}/modules ${SOFA_SOURCE_DIR}/framework
+ ${SOFA_SOURCE_DIR}/extlibs/miniBoost ${SOFA_SOURCE_DIR}/include/modules
+ ${SOFA_SOURCE_DIR}/include/framework ${SOFA_SOURCE_DIR}/include/extlibs/miniBoost
+ ${SOFA_SOURCE_DIR}/extlibs/tinyxml )
+ endif()
+
+ if (MML_SOFA_1_0_BETA4 OR MML_SOFA_1_0_RC1)
+ # includes
+ set(SOFA_INCLUDE_DIR ${SOFA_BUILD_DIR}/include ${SOFA_BUILD_DIR}/modules ${SOFA_BUILD_DIR}/framework
+ ${SOFA_BUILD_DIR}/extlibs/miniBoost ${SOFA_BUILD_DIR}/include/modules
+ ${SOFA_BUILD_DIR}/include/framework ${SOFA_BUILD_DIR}/include/extlibs/miniBoost )
+ endif()
+endif()
diff --git a/modeling/SofaSupport.cmake b/modeling/SofaSupport.cmake
new file mode 100644
index 0000000..aab9b68
--- /dev/null
+++ b/modeling/SofaSupport.cmake
@@ -0,0 +1,168 @@
+#
+# Sofa support in MML
+#
+# Note that only MML_SOFA_STABLE is currently/actively supported
+#
+# This file defines the following variables:
+# - SOFA_SUPPORTED_VERSION the name of the currently supported Sofa stable version
+# this is equal to the git tag
+# - SOFA_BUILD_DIR To be set by the user to the Sofa build directory
+# This is mandatory to have the Sofa support
+#
+# If Sofa support is enabled by the user by setting the build directory,
+# the following variables are defined:
+# - SOFA_SUPPORT Set to ON
+# - SOFA_SOURCE_DIR The top-level directory of the Sofa source.
+# Automatically extracted/hacked from the CMakeCache.txt in the
+# build directory (${SOFA_BUILD_DIR})
+# - SOFA_LIBS List of Sofa libraries to link against needed at link time
+# - SOFA_LIB_DIR Directory where to find the compiled Sofa libraries
+# - SOFA_INCLUDE_DIR Sofa include directories needed a compile time
+#
+# If Sofa support is enabled by the user by setting the build directory,
+# the following flags needs to be defined at compilation time:
+# -DSOFA_SUPPORT
+# -DSOFA_PATH="${SOFA_BUILD_DIR}"
+# -DSOFA_STABLE
+
+# list of possibly supported sofa STABLE version
+# Only stable version are supported in MML
+set(SOFA_STABLE_V15_03 "sofa-v15.03")
+
+# The currently supported Sofa version
+# Only stable version are supported in MML
+# To support a new version, add a new SOFA_STABLE_V... above and modify this
+set(SOFA_SUPPORTED_VERSION ${SOFA_STABLE_V15_03})
+
+# "find" SOFA (you need to have a SOFA_BUILD_DIR environment variable
+# or to define it manually during configuration process)
+set(SOFA_BUILD_DIR $ENV{SOFA_BUILD_DIR} CACHE PATH "Where to find SOFA (stable) ${SOFA_SUPPORTED_VERSION} build directory")
+if(EXISTS ${SOFA_BUILD_DIR})
+ # Compile SOFA .scn import filter? (ON or OFF)
+ option(SOFA_SUPPORT "Compile SOFA MML Simulator?" ON)
+endif()
+
+# reset it
+unset(SOFA_LIBS)
+
+# sofa settings
+if(SOFA_SUPPORT)
+ # supported stable version 15.03
+ if (SOFA_SUPPORTED_VERSION STREQUAL "${SOFA_STABLE_V15_03}")
+ message(STATUS "SOFA support on (supporting ${SOFA_SUPPORTED_VERSION})")
+
+ # TODO one day when Sofa includes an install phase and FindSofa.cmake, everything should be easier:
+ # # use Find SOFA script
+ # set(SOFA_BUILD_DIR ${SOFA_SOURCE_DIR})
+ # include(${SOFA_BUILD_DIR}/cmake/Modules/FindSOFA.cmake)
+ # list(APPEND CMAKE_MODULE_PATH "${SOFA_BUILD_DIR}/cmake/Modules")
+ # find_package(SOFA)
+ # # Check the FindSofa.cmake and "translate" all their variables here
+ # set(SOFA_INCLUDE_DIR ${SOFA_INCLUDE_DIRS})
+ # set(SOFA_LIBS ${SOFA_LIB_CORE}
+ # ${SOFA_LIB_HELPER}
+ # ${SOFA_LIB_DEFAULT_TYPE})
+
+ # For now, lets trick it!
+ # Problem with the current way Sofa uses cmake:
+ # - there is no install procedure
+ # - everything needed at MML compile-time (headers mainly) are to be found in the source directory
+ # - everything needed at MML link-time (lib mainly) are to be found in the build directory
+ # The hack to solve this consists in parsing the CMakeCache file (which is in the build directory toplevel)
+ # to automatically get the value the source directory (in the CMAKE_SOURCE_DIR variable)
+ # So here it is in two steps
+ # 1. Get the correct line from the CMakeCache file
+ file(STRINGS ${SOFA_BUILD_DIR}/CMakeCache.txt SOFA_SOURCE_DIR_LINE REGEX "^Sofa_SOURCE_DIR:STATIC=(.*)$")
+ # 2. Use a regex to extract the path from the line
+ string(REGEX REPLACE "^Sofa_SOURCE_DIR:STATIC=(.*)$" "\\1" SOFA_SOURCE_DIR "${SOFA_SOURCE_DIR_LINE}")
+ message("Detected Sofa ${MML_SOFA_STABLE} source directory is ${SOFA_SOURCE_DIR}")
+
+ # fill the list of needed libraries
+ # the only way to find the required lib is to hack the files generated by cmake:
+ # cd ${SOFA_BUILD_DIR}/applications/projects/runSofa
+ # cat CMakeFiles/runSofa.dir/link.txt | sed 's/\s/\n/g' | grep ../../../lib | sed "s+../../../lib/lib++g" | sed "s+.so++g"
+ # explained:
+ # - first sed to explode the one line into one word per line
+ # - first grep to get only the Sofa library
+ # - second sed to remove the ../../../lib/
+ # - third sed to remove the trailing .so
+ #
+ set(SOFA_LIBS
+ SofaSimulationTree
+ SofaGuiMain
+ SofaComponentMain
+ SofaSimulationGraph
+ SofaGuiQt
+ Qwt
+ SofaGuiGlut
+ SofaGuiCommon
+ SofaComponentMain
+ SofaComponentBase
+ SofaBaseAnimationLoop
+ SofaComponentCommon
+ SofaComponentGeneral
+ SofaExporter
+ SofaValidation
+ SofaLoader
+ SofaEngine
+ SofaHaptics
+ SofaPreconditioner
+ SofaComponentAdvanced
+ SofaEulerianFluid
+ SofaComponentMisc
+ SofaMiscForceField
+ SofaMiscFem
+ SofaMiscEngine
+ SofaNonUniformFem
+ SofaMiscCollision
+ SofaExplicitOdeSolver
+ SofaConstraint
+ SofaImplicitOdeSolver
+ SofaVolumetricData
+ SofaMiscSolver
+ SofaMisc
+ SofaMiscTopology
+ SofaUserInteraction
+ SofaGraphComponent
+ SofaMeshCollision
+ SofaBaseCollision
+ SofaSphFluid
+ SofaObjectInteraction
+ SofaDeformable
+ SofaMiscMapping
+ SofaRigid
+ SofaBaseMechanics
+ SofaSimpleFem
+ SofaOpenglVisual
+ SofaTopologyMapping
+ SofaBoundaryCondition
+ SofaEigen2Solver
+ SofaDenseSolver
+ SofaBaseLinearSolver
+ SofaBaseVisual
+ SofaBaseTopology
+ SofaSimulationTree
+ SofaSimulationCommon
+ SofaCore
+ SofaDefaultType
+ SofaHelper
+ tinyxml
+ )
+
+ # Library path
+ set(SOFA_LIB_DIR ${SOFA_BUILD_DIR}/lib)
+
+ # fill in the required include path
+ # use sofa source directory for sofa stable version
+ set(SOFA_INCLUDE_DIR ${SOFA_SOURCE_DIR}/include
+ ${SOFA_SOURCE_DIR}/modules
+ ${SOFA_SOURCE_DIR}/framework
+ ${SOFA_SOURCE_DIR}/extlibs/miniBoost
+ ${SOFA_SOURCE_DIR}/include/modules
+ ${SOFA_SOURCE_DIR}/include/framework
+ ${SOFA_SOURCE_DIR}/include/extlibs/miniBoost
+ ${SOFA_SOURCE_DIR}/extlibs/tinyxml
+ )
+
+ endif()
+endif()
diff --git a/modeling/actions/mml/CMakeLists.txt b/modeling/actions/mml/CMakeLists.txt
index 80907cd..c92760e 100644
--- a/modeling/actions/mml/CMakeLists.txt
+++ b/modeling/actions/mml/CMakeLists.txt
@@ -1,10 +1,8 @@
camitk_extension(ACTION_EXTENSION
- NEEDS_LIBXML2
NEEDS_XSD
- NEEDS_CEP_LIBRARIES pml mml monitoring lml
- NEEDS_COMPONENT_EXTENSION physicalmodel mml vtkmesh physicalmodel msh
+ NEEDS_CEP_LIBRARIES pml pmlschema lml lmlschema monitoring monitoringgui mmlschema
+ NEEDS_COMPONENT_EXTENSION pmlcomponent mmlcomponent vtkmesh msh
CEP_NAME CEP_MODELING
DESCRIPTION "Action MML features algorithms applicable on MML components."
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES BigEndian.hdr
)
\ No newline at end of file
diff --git a/modeling/actions/mml/CreateSC.cpp b/modeling/actions/mml/CreateSC.cpp
deleted file mode 100644
index 06f80ff..0000000
--- a/modeling/actions/mml/CreateSC.cpp
+++ /dev/null
@@ -1,177 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <PMManagerDC.h>
-
-#include <PhysicalModel.h>
-
-#include <StructuralComponentDC.h>
-#include <MultiComponentDC.h>
-
-#include "CreateSC.h"
-#include <QVector3D>
-#include <Log.h>
-#include <Application.h>
-using namespace camitk;
-
-// -------------------- CreateSC --------------------
-CreateSC::CreateSC(ActionExtension* extension) : Action(extension) {
- this->setName("CreateSC");
- this->setDescription("Generates a Structural Component from a given box selection");
- this->setComponent("PMManagerDC");
- this->setFamily("Mesh Processing");
- this->addTag("CreateSC");
- this->addTag("Select");
-
- setProperty("Name Of The New Component", "selection");
- //TODO setProperty("Select Only On Surface", (bool) false);
- setProperty("Bottom Corner", QVector3D(0.0,0.0,0.0));
- setProperty("Top Corner", QVector3D(0.0,0.0,0.0));
-}
-
-// --------------- getWidget -------------------
-QWidget * CreateSC::getWidget() {
-
- //-- init the property values using the selection state
- if (getTargets().size() == 1) {
- PMManagerDC *pmlDC = dynamic_cast<PMManagerDC*>(getTargets().last());
-
- //-- check if name exists, generate new if it does
- QString selectionName = property("Name Of The New Component").toString();
-
- while (pmlDC->getPhysicalModel()->getComponentByName(selectionName.toStdString())!=NULL) {
- // If the name contains a number then increment it
- QRegExp numSearch( "(^|[^\\d])(\\d+)" ); // we want to match as far left as possible, and when the number is at the start of the name
-
- // Does it have a number?
- int start = numSearch.lastIndexIn( selectionName );
-
- if (start != -1) {
- // It has a number, increment it
- start = numSearch.pos( 2 ); // we are only interested in the second group
- QString numAsStr = numSearch.capturedTexts()[ 2 ];
- QString number = QString::number( numAsStr.toInt() + 1 );
- number = number.rightJustified( numAsStr.length(), '0' );
- selectionName.replace( start, numAsStr.length(), number );
- } else {
- // no number
- start = selectionName.lastIndexOf('.');
-
- if (start != -1) {
- // has a . somewhere, e.g. it has an extension
- selectionName.insert(start, '1');
- } else {
- // no extension, just tack it on to the end
- selectionName += '1';
- }
- }
- }
-
- setProperty("Name Of The New Component",selectionName);
- double bounds[6]; // [xmin,xmax, ymin,ymax, zmin,zmax]
- pmlDC->getBounds(bounds);
-
- setProperty("Bottom Corner", QVector3D(bounds[0],bounds[2],bounds[4]));
- setProperty("Top Corner", QVector3D(bounds[1],bounds[3],bounds[5]));
- }
-
- return Action::getWidget();
-}
-
-// --------------- apply -------------------
-Action::ApplyStatus CreateSC::apply() {
- CAMITK_INFO("CreateSC", "apply", "Create Structural Component in " << getTargets().last()->getName().toStdString());
-
- // set waiting cursor and status bar
- QApplication::setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
- Application::showStatusBarMessage("Creating New Structural Component...");
- Application::resetProgressBar();
-
- // use the last target
- PMManagerDC *pmlDC = dynamic_cast<PMManagerDC*>(getTargets().last());
- PhysicalModel *pm=pmlDC->getPhysicalModel();
-
- // create the new component
- StructuralComponent * selection;
- QVector3D lower = property("Bottom Corner").value<QVector3D>();
- QVector3D top = property("Top Corner").value<QVector3D>();
-
- QString selectionName = property("Name Of The New Component").toString();
- selection = new StructuralComponent(pm, selectionName.toStdString());
- Cell *selectionC = new Cell(pm, StructureProperties::POLY_VERTEX);
- selection->addStructure(selectionC);
-
- unsigned int nbSelected = 0;
- Atom *a;
- double pos[3];
-
- for (unsigned int i = 0; i < pm->getAtoms()->getNumberOfStructures(); i++) {
- // get the src position
- a = (Atom *) pm->getAtoms()->getStructure(i);
- a->getPosition(pos);
-
- // should it be selected
- if (pos[0] >= lower.x() && pos[0] <= top.x() && pos[1] >= lower.y() && pos[1] <= top.y() && pos[2] >= lower.z() && pos[2] <= top.z()) {
- selectionC->addStructureIfNotIn(a);
- nbSelected++;
- }
- }
-
- Application::showStatusBarMessage("Done Creating New Structural Component (" + QString::number(nbSelected) + " atoms selected");
-
- // add the new SC to the informative component
- if (!pm->getInformativeComponents()) {
- MultiComponent *mc = new MultiComponent(pm, "Informative Components");
- pm->setInformativeComponents(mc);
- }
-
- pm->getInformativeComponents()->addSubComponent(selection);
-
- // Create the corresponding MCDC if needed
- MultiComponentDC *mcdc = pmlDC->getDC(pm->getInformativeComponents());
- StructuralComponentDC *scdc;
-
- if (!mcdc) {
- // no informative component => the creation of the informative component DC
- // is going to cascade down and create the new SCDC corresponding to selection
- new MultiComponentDC(pmlDC, pmlDC, pm->getInformativeComponents());
- scdc = pmlDC->getDC(selection);
- } else {
- // there is already the informative component, just add the new corresponding SCDC
- scdc = new StructuralComponentDC(mcdc,pmlDC,selection);
- }
-
- pmlDC->refreshInterfaceNode();
-
- Application::showStatusBarMessage("Created SC \"" + scdc->getName() + "\"");
-
- // -- refresh to show
- Application::refresh();
-
- // restore the normal cursor and progress bar
- Application::resetProgressBar();
- QApplication::restoreOverrideCursor();
- return SUCCESS;
-}
diff --git a/modeling/actions/mml/CreateSC.h b/modeling/actions/mml/CreateSC.h
deleted file mode 100644
index 3b6b99c..0000000
--- a/modeling/actions/mml/CreateSC.h
+++ /dev/null
@@ -1,56 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef CREATESC_H
-#define CREATESC_H
-
-#include <Action.h>
-/**
- * @ingroup group_cepmodeling_actions_mml
- *
- * @brief
- * Action to generate MML/Sofa scn from a vtk mesh.
- *
- *
- **/
-class CreateSC : public camitk::Action {
-
-public:
- /// the constructor
- CreateSC(camitk::ActionExtension* );
-
- /// the destructor
- virtual ~CreateSC() {};
-
- /// use the default widget (but update the values)
- virtual QWidget* getWidget();
-
-public slots:
- /// method applied when the action is called
- virtual ApplyStatus apply();
-
-};
-
-#endif // CREATESC_H
diff --git a/modeling/actions/mml/GenerateModel.cpp b/modeling/actions/mml/GenerateModel.cpp
index b586e32..59386ae 100644
--- a/modeling/actions/mml/GenerateModel.cpp
+++ b/modeling/actions/mml/GenerateModel.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,8 +27,8 @@
#include <MonitoringManagerFactory.h>
#include <SimulatorFactory.h>
-#include <mml/MonitorIn.hxx>
-#include <lml/Translation.h>
+#include <MonitorIn.hxx>
+#include <Translation.h>
#include <MultiComponent.h>
#include "GenerateModel.h"
@@ -46,13 +46,14 @@
#include <QFileInfo>
#include <QDateTime>
#include <QFileDialog>
+#include <QMessageBox>
using namespace camitk;
// -------------------- GenerateModel --------------------
GenerateModel::GenerateModel( ActionExtension* extension ) : Action( extension ) {
this->setName( "Generate Model" );
- this->setDescription( "Generates a model from a mesh: mml, pml and corresponding lml are generated" );
+ this->setDescription( "Generates a model from a mesh: mml, pml and corresponding lml are generated.<p>The current points selected by picking (<tt>Picked Selection</tt>) will be considered as fixed nodes." );
this->setComponent( "MeshComponent" );
this->setFamily( "Mesh Processing" );
this->addTag( "Build Biomechanical Model" );
@@ -83,7 +84,7 @@ Action::ApplyStatus GenerateModel::apply() {
//-- 0) get the selected node index into an handy list
fixedDOFIndex.clear();
- vtkSmartPointer<vtkSelectionNode> currentlySelected = targetMesh->getSelection( "Selected Points" );
+ vtkSmartPointer<vtkSelectionNode> currentlySelected = targetMesh->getSelection( "Picked Selection" );
if( currentlySelected != NULL ) {
vtkSmartPointer<vtkIdTypeArray> idList = vtkIdTypeArray::SafeDownCast( currentlySelected->GetSelectionList() );
// if the selection is not empty
@@ -234,32 +235,35 @@ void GenerateModel::saveMMLFiles( QString baseFilename ) {
// this hack should become a call to a static method to transform a sofa scn to a pml
MonitoringManager *mml = MonitoringManagerFactory::createManager( mmlFilename.toStdString().c_str() );
- // Modify mml to use pml file instead of sofa
- mmlIn.simulatorFile().reset();
- mmlIn.pmlFile( pmlFilename.toStdString().c_str() );
- // reopen for rewrite
- mmlofs.open( mmlFilename.toStdString().c_str(), std::ios_base::trunc );
- mml::monitoringIn( mmlofs, mmlIn, map );
- mmlofs.close();
-
- // Modify the pml to have the selected nodes fixed
- QString completePmlFilename = baseFilename + "-model.pml";
- PhysicalModel *pml = new PhysicalModel( completePmlFilename.toStdString().c_str() );
-
- // add the informative components containing the fixed dof
- if (fixedDOFIndex.size()>0 && property( "Selection Is Constrained" ).toBool() ) {
- StructuralComponent *fixedDof = new StructuralComponent( pml, "Fixed Dof" );
- std::set<int>::const_iterator pos;
- for( pos = fixedDOFIndex.begin(); pos != fixedDOFIndex.end(); ++pos )
- fixedDof->addStructure( pml->getAtom( *pos ) );
- pml->getInformativeComponents()->addSubComponent( fixedDof );
- }
+ if (mml != NULL) {
+ // Modify mml to use pml file instead of sofa
+ mmlIn.simulatorFile().reset();
+ mmlIn.pmlFile( pmlFilename.toStdString().c_str() );
+ // reopen for rewrite
+ mmlofs.open( mmlFilename.toStdString().c_str(), std::ios_base::trunc );
+ mml::monitoringIn( mmlofs, mmlIn, map );
+ mmlofs.close();
+
+ // Modify the pml to have the selected nodes fixed
+ QString completePmlFilename = baseFilename + "-model.pml";
+ PhysicalModel *pml = new PhysicalModel( completePmlFilename.toStdString().c_str() );
+
+ // add the informative components containing the fixed dof
+ if (fixedDOFIndex.size()>0 && property( "Selection Is Constrained" ).toBool() ) {
+ StructuralComponent *fixedDof = new StructuralComponent( pml, "Fixed Dof" );
+ std::set<int>::const_iterator pos;
+ for( pos = fixedDOFIndex.begin(); pos != fixedDOFIndex.end(); ++pos )
+ fixedDof->addStructure( pml->getAtom( *pos ) );
+ pml->getInformativeComponents()->addSubComponent( fixedDof );
+ }
- // reopen for rewrite
- ofstream pmlofs( completePmlFilename.toStdString().c_str(), std::ios_base::trunc );
- pml->xmlPrint( pmlofs );
- pmlofs.close();
+ // reopen for rewrite
+ ofstream pmlofs( completePmlFilename.toStdString().c_str(), std::ios_base::trunc );
+ pml->xmlPrint( pmlofs );
+ pmlofs.close();
- Application::open( mmlFilename );
+ Application::open( mmlFilename );
+ } else
+ QMessageBox::warning(NULL,"Generating Error", "Problem while generating the model<br/>Sofa Simulator not supported");
}
diff --git a/modeling/actions/mml/GenerateModel.h b/modeling/actions/mml/GenerateModel.h
index f3f378a..2749cba 100644
--- a/modeling/actions/mml/GenerateModel.h
+++ b/modeling/actions/mml/GenerateModel.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/actions/mml/MMLActionExtension.cpp b/modeling/actions/mml/MMLActionExtension.cpp
index 1b079c7..4f90208 100644
--- a/modeling/actions/mml/MMLActionExtension.cpp
+++ b/modeling/actions/mml/MMLActionExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,14 +24,12 @@
****************************************************************************/
#include "MMLActionExtension.h"
-#include "CreateSC.h"
#include "GenerateModel.h"
+#include "SimulationDialog.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(mmlactionextension, MMLActionExtension)
// -------------------- init --------------------
void MMLActionExtension::init() {
registerNewAction(GenerateModel);
- registerNewAction(CreateSC);
+ registerNewAction(SimulationDialog);
}
diff --git a/modeling/actions/mml/MMLActionExtension.h b/modeling/actions/mml/MMLActionExtension.h
index ec6cdb1..6987662 100644
--- a/modeling/actions/mml/MMLActionExtension.h
+++ b/modeling/actions/mml/MMLActionExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,13 +40,14 @@
class MMLActionExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.imaging.action.mml")
public:
/// the constructor
- MMLActionExtension() : ActionExtension() {};
+ MMLActionExtension() : ActionExtension() {}
/// the destructor
- virtual ~MMLActionExtension() {};
+ virtual ~MMLActionExtension() {}
/// Method must be reimplemented when an ActionExtension is done,
/// the own actions of an extension are load there.
@@ -67,4 +68,4 @@ public:
-#endif // MMLACTIONEXTENSION_H
\ No newline at end of file
+#endif // MMLACTIONEXTENSION_H
diff --git a/modeling/actions/mml/SimulationDialog.cpp b/modeling/actions/mml/SimulationDialog.cpp
new file mode 100644
index 0000000..41ce366
--- /dev/null
+++ b/modeling/actions/mml/SimulationDialog.cpp
@@ -0,0 +1,55 @@
+
+
+#include "SimulationDialog.h"
+
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+#include <Application.h>
+#include <QFrame>
+#include <MonitoringDialog.h>
+#include <MonitoringGuiManager.h>
+#include <Log.h>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+SimulationDialog::SimulationDialog(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("Simulation Dialog");
+ setDescription("Show MML Simulation Dialog");
+ setComponent("MMLComponent");
+
+ // Setting classification family and tags
+ setFamily("Modeling");
+}
+
+// --------------- destructor -------------------
+SimulationDialog::~SimulationDialog() {
+}
+
+// --------------- getWidget -------------------
+QWidget* SimulationDialog::getWidget() {
+ MMLComponent * input = dynamic_cast<MMLComponent *> (getTargets().last());
+ QWidget * myWidget = NULL;
+
+ if( input ) {
+ myWidget = input->getMonitoringGuiManager()->getDialog();
+ // show the widget
+ myWidget->show();
+ } else {
+ CAMITK_ERROR("SimulationDialog", "getWidget", "MMLComponent not valid: no simulation tab can be shown");
+ }
+
+
+ return myWidget;
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus SimulationDialog::apply() {
+ return SUCCESS;
+}
+
+
diff --git a/modeling/actions/mml/SimulationDialog.h b/modeling/actions/mml/SimulationDialog.h
new file mode 100644
index 0000000..258f478
--- /dev/null
+++ b/modeling/actions/mml/SimulationDialog.h
@@ -0,0 +1,43 @@
+
+
+#ifndef SIMULATIONTABS_H
+#define SIMULATIONTABS_H
+
+#include <Action.h>
+
+#include <MMLComponent.h>
+
+/**
+ * @ingroup group_cepmodeling_actions_mml
+ *
+ * @brief
+ * Action to show the MML Simulation Dialog
+ *
+ *
+ **/
+class SimulationDialog : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ SimulationDialog(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~SimulationDialog();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of SimulationDialog (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+ virtual QWidget * getWidget();
+
+private:
+
+};
+
+#endif // SIMULATIONTABS_H
+
diff --git a/modeling/actions/pml/AddNewPropertyWidget.ui b/modeling/actions/pml/AddNewPropertyWidget.ui
new file mode 100644
index 0000000..ff5ecaf
--- /dev/null
+++ b/modeling/actions/pml/AddNewPropertyWidget.ui
@@ -0,0 +1,112 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>ui_AddNewPropertyWidget</class>
+ <widget class="QDialog" name="ui_AddNewPropertyWidget">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>407</width>
+ <height>125</height>
+ </rect>
+ </property>
+ <property name="windowTitle">
+ <string>Add New Property</string>
+ </property>
+ <property name="sizeGripEnabled">
+ <bool>false</bool>
+ </property>
+ <property name="modal">
+ <bool>true</bool>
+ </property>
+ <layout class="QFormLayout" name="formLayout">
+ <property name="sizeConstraint">
+ <enum>QLayout::SetDefaultConstraint</enum>
+ </property>
+ <property name="fieldGrowthPolicy">
+ <enum>QFormLayout::AllNonFixedFieldsGrow</enum>
+ </property>
+ <property name="labelAlignment">
+ <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+ </property>
+ <item row="0" column="0">
+ <widget class="QLabel" name="nameLabel">
+ <property name="text">
+ <string>Name</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="nameLineEdit"/>
+ </item>
+ <item row="3" column="0">
+ <widget class="QLabel" name="valueLabel">
+ <property name="text">
+ <string>Value</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="1">
+ <widget class="QLineEdit" name="valueLineEdit"/>
+ </item>
+ <item row="4" column="1">
+ <widget class="QDialogButtonBox" name="buttonBox">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="standardButtons">
+ <set>QDialogButtonBox::Cancel|QDialogButtonBox::Ok</set>
+ </property>
+ </widget>
+ </item>
+ <item row="4" column="0">
+ <spacer name="horizontalSpacer">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ <resources/>
+ <connections>
+ <connection>
+ <sender>buttonBox</sender>
+ <signal>accepted()</signal>
+ <receiver>ui_AddNewPropertyWidget</receiver>
+ <slot>accept()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>248</x>
+ <y>254</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>157</x>
+ <y>274</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>buttonBox</sender>
+ <signal>rejected()</signal>
+ <receiver>ui_AddNewPropertyWidget</receiver>
+ <slot>reject()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>316</x>
+ <y>260</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>286</x>
+ <y>274</y>
+ </hint>
+ </hints>
+ </connection>
+ </connections>
+</ui>
diff --git a/modeling/actions/pml/CMakeLists.txt b/modeling/actions/pml/CMakeLists.txt
new file mode 100644
index 0000000..c455aed
--- /dev/null
+++ b/modeling/actions/pml/CMakeLists.txt
@@ -0,0 +1,9 @@
+# Call CamiTK CMake Macro to define the action
+camitk_extension( ACTION_EXTENSION
+ NEEDS_COMPONENT_EXTENSION pmlcomponent
+ NEEDS_CEP_LIBRARIES pml pmlschema
+ NEEDS_XSD
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "Feature PML actions which aims at displaying and manipulating structural information about a PML component."
+ )
+
diff --git a/modeling/actions/pml/CamiTKPropertyList.cpp b/modeling/actions/pml/CamiTKPropertyList.cpp
new file mode 100644
index 0000000..a71deb9
--- /dev/null
+++ b/modeling/actions/pml/CamiTKPropertyList.cpp
@@ -0,0 +1,60 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include "CamiTKPropertyList.h"
+
+using namespace camitk;
+
+// ---------------------- Destructor ----------------------------
+CamiTKPropertyList::~CamiTKPropertyList() {
+ // delete all properties
+ foreach(Property* prop, propertyMap.values())
+ delete prop;
+ propertyMap.clear();
+}
+
+// ---------------------- getProperty ----------------------------
+Property* CamiTKPropertyList::getProperty(QString name) {
+ return propertyMap.value(name);
+}
+
+Property* CamiTKPropertyList::getProperty ( unsigned int index) {
+ return getProperty(QString(dynamicPropertyNames().at(index)));
+}
+
+// ---------------------- addProperty ----------------------------
+bool CamiTKPropertyList::addProperty(Property * prop) {
+ // add a dynamic Qt Meta Object property with the same name
+ bool returnStatus = setProperty(prop->getName().toStdString().c_str(), prop->getInitialValue() );
+ // add to the map
+ propertyMap.insert(prop->getName(),prop);
+
+ return returnStatus;
+}
+
+// ---------------------- getNumberOfProperties ----------------------------
+unsigned int CamiTKPropertyList::getNumberOfProperties() const {
+ return dynamicPropertyNames().size();
+}
+
diff --git a/modeling/actions/pml/CamiTKPropertyList.h b/modeling/actions/pml/CamiTKPropertyList.h
new file mode 100644
index 0000000..a1f7ad4
--- /dev/null
+++ b/modeling/actions/pml/CamiTKPropertyList.h
@@ -0,0 +1,72 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include <QObject>
+#include <QMap>
+#include <Property.h>
+
+#ifndef PMLITEMPROPERTY_H
+#define PMLITEMPROPERTY_H
+
+/** This class holds a list of CamiTK Properties and can be used as an editable QObject
+ * for the ObjectControler widget
+ */
+class CamiTKPropertyList : public QObject {
+ Q_OBJECT
+
+public:
+
+ // destructor
+ virtual ~CamiTKPropertyList();
+
+ /** Get a Property given its name
+ * @param name the property name
+ * @return NULL if the name does not match any property name
+ *
+ * @see Property
+ */
+ Q_INVOKABLE virtual camitk::Property * getProperty(QString name);
+
+ /** Add a new CamiTK property to the component.
+ * If the property already exist, it will just change its value.
+ *
+ * \note
+ * The component takes ownership of the Property instance.
+ *
+ * @return false if the Qt Meta Object property was added by this method (otherwise the property was already defined and true is returned if it was successfully updated)
+ */
+ virtual bool addProperty(camitk::Property*);
+
+ /// get the number of properties
+ virtual unsigned int getNumberOfProperties() const;
+
+ /// get the property stored at the given index
+ virtual camitk::Property* getProperty(unsigned int);
+
+private:
+ /// list of CamiTK property decorating the dynamic properties
+ QMap<QString, camitk::Property*> propertyMap;
+
+};
+#endif // PMLITEMPROPERTY_H
\ No newline at end of file
diff --git a/modeling/actions/pml/CreateSC.cpp b/modeling/actions/pml/CreateSC.cpp
new file mode 100644
index 0000000..5b9a28b
--- /dev/null
+++ b/modeling/actions/pml/CreateSC.cpp
@@ -0,0 +1,321 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <PMLComponent.h>
+
+#include <PhysicalModel.h>
+#include <MultiComponent.h>
+
+#include "CreateSC.h"
+#include <QVector3D>
+#include <Log.h>
+#include <Application.h>
+#include <vtkIdTypeArray.h>
+
+using namespace camitk;
+
+// -------------------- CreateSC --------------------
+CreateSC::CreateSC(ActionExtension * extension) : Action(extension) {
+ checkEvents = false;
+
+ this->setName("Create Structural Component From Selection");
+ this->setDescription("Generates a Structural Component from a given bounding box or current PML explorer selection");
+ this->setComponent("PMLComponent");
+ this->setFamily("Physical Model");
+ this->addTag("CreateSC");
+ this->addTag("Select");
+
+ setProperty("Name Of The New Component", "selection");
+ //TODO setProperty("Select Only On Surface", (bool) false);
+ setProperty("Use PML Selection", (bool) false);
+ setProperty("Use Picking Selection", (bool) false);
+ setProperty("Bottom Corner", QVector3D(0.0, 0.0, 0.0));
+ setProperty("Top Corner", QVector3D(0.0, 0.0, 0.0));
+
+ // every time a property is changed, the action will be informed, see method event(..)
+ setAutoUpdateProperties(true);
+}
+
+// ---------------------- event ----------------------------
+bool CreateSC::event(QEvent * e) {
+ if (checkEvents && e->type() == QEvent::DynamicPropertyChange) {
+ e->accept();
+ QDynamicPropertyChangeEvent * changeEvent = dynamic_cast<QDynamicPropertyChangeEvent *>(e);
+
+ if (!changeEvent) {
+ return false;
+ }
+
+ // if the user change the boolean properties, update bounds
+ PMLComponent * pmlComponent = dynamic_cast<PMLComponent *>(getTargets().last());
+
+ if (pmlComponent != NULL && changeEvent->propertyName() == "Use PML Selection" || changeEvent->propertyName() == "Use Picking Selection") {
+ updateCorners(pmlComponent);
+ }
+
+ return true;
+ }
+
+ return QObject::event(e);
+}
+
+// --------------- getWidget -------------------
+QWidget * CreateSC::getWidget() {
+
+ //-- init the property values using the selection state
+ if (getTargets().size() == 1) {
+ PMLComponent * pmlComponent = dynamic_cast<PMLComponent *>(getTargets().last());
+
+ //-- check if name exists, generate new if it does
+ QString selectionName = property("Name Of The New Component").toString();
+
+ while (pmlComponent->getPhysicalModel()->getComponentByName(selectionName.toStdString()) != NULL) {
+ // If the name contains a number then increment it
+ QRegExp numSearch("(^|[^\\d])(\\d+)"); // we want to match as far left as possible, and when the number is at the start of the name
+
+ // Does it have a number?
+ int start = numSearch.lastIndexIn(selectionName);
+
+ if (start != -1) {
+ // It has a number, increment it
+ start = numSearch.pos(2); // we are only interested in the second group
+ QString numAsStr = numSearch.capturedTexts()[ 2 ];
+ QString number = QString::number(numAsStr.toInt() + 1);
+ number = number.rightJustified(numAsStr.length(), '0');
+ selectionName.replace(start, numAsStr.length(), number);
+ } else {
+ // no number
+ start = selectionName.lastIndexOf('.');
+
+ if (start != -1) {
+ // has a . somewhere, e.g. it has an extension
+ selectionName.insert(start, '1');
+ } else {
+ // no extension, just tack it on to the end
+ selectionName += '1';
+ }
+ }
+ }
+
+ setProperty("Name Of The New Component", selectionName);
+
+ // update corner values depending on the selection (if this is what the user wants)
+ updateCorners(pmlComponent);
+
+ // now that we have a widget, consider all events
+ checkEvents = true;
+ }
+
+ return Action::getWidget();
+}
+
+// --------------- computeBoundsOfPointIds -------------------
+void CreateSC::computeBoundsOfPointIds(PMLComponent * comp, vtkSmartPointer< vtkIdTypeArray > selectedIds, double bounds[6]) {
+ // compute the bounds of the selected atoms only
+ Atom * a;
+ double pos[3];
+ PhysicalModel * pml = comp->getPhysicalModel();
+
+ // bounds = [xmin,xmax, ymin,ymax, zmin,zmax]
+ bounds[0] = bounds[2] = bounds[4] = VTK_DOUBLE_MAX;
+ bounds[1] = bounds[3] = bounds[5] = -VTK_DOUBLE_MAX;
+
+ for (vtkIdType i = 0; i < selectedIds->GetNumberOfTuples(); i++) {
+ a = pml->getAtom(selectedIds->GetValue(i));
+
+ if (a) {
+ a->getPosition(pos);
+
+ for (int j = 0; j < 3; j++) {
+ if (pos[j] < bounds[2 * j]) {
+ bounds[2 * j] = pos[j];
+ }
+
+ if (pos[j] > bounds[2 * j + 1]) {
+ bounds[2 * j + 1] = pos[j];
+ }
+ }
+ }
+ }
+}
+
+// --------------- computeBoundsOfCellIds -------------------
+void CreateSC::computeBoundsOfCellIds(PMLComponent * comp, vtkSmartPointer< vtkIdTypeArray > selectedCellIds, double bounds[6]) {
+ vtkSmartPointer< vtkIdTypeArray > selectedIds = vtkSmartPointer<vtkIdTypeArray>::New();
+ Cell * c;
+ PhysicalModel * pml = comp->getPhysicalModel();
+
+ for (vtkIdType i = 0; i < selectedCellIds->GetNumberOfTuples(); i++) {
+ c = pml->getCell(selectedCellIds->GetValue(i));
+
+ // insert all the cell atoms
+ for (unsigned int j = 0; j < c->getNumberOfStructures(); j++) {
+ selectedIds->InsertNextValue(c->getStructure(j)->getIndex());
+ }
+ }
+
+ computeBoundsOfPointIds(comp, selectedIds, bounds);
+}
+
+// --------------- mergeBounds -------------------
+void CreateSC::mergeBounds(double bounds1[6], double bounds2[6]) {
+ // [xmin,xmax, ymin,ymax, zmin,zmax]
+ for (int j = 0; j < 3; j++) {
+ if (bounds1[2 * j] < bounds2[2 * j]) {
+ // negative expansion
+ bounds2[2 * j] = bounds1[2 * j];
+ }
+
+ if (bounds1[2 * j + 1] > bounds2[2 * j + 1]) {
+ // position expansion
+ bounds2[2 * j + 1] = bounds1[2 * j + 1];
+ }
+ }
+}
+
+// --------------- computeBoundsOfSelection -------------------
+bool CreateSC::computeBoundsOfSelection(PMLComponent * pmlComponent, QString selectionName, double bounds[6]) {
+ // get the point selection
+ vtkSmartPointer<vtkSelectionNode> selectionNode = pmlComponent->getSelection(selectionName);
+
+ if (selectionNode) {
+ vtkSmartPointer<vtkIdTypeArray> indices = vtkIdTypeArray::SafeDownCast(selectionNode->GetSelectionList());
+
+ if (indices->GetNumberOfTuples() > 0) {
+ if (selectionNode->GetFieldType() == vtkSelectionNode::POINT) {
+ computeBoundsOfPointIds(pmlComponent, indices, bounds);
+ return true;
+ } else if (selectionNode->GetFieldType() == vtkSelectionNode::CELL) {
+ computeBoundsOfCellIds(pmlComponent, vtkIdTypeArray::SafeDownCast(selectionNode->GetSelectionList()), bounds);
+ return true;
+ }
+ }
+ }
+
+ return false;
+
+}
+
+
+// --------------- updateCorners -------------------
+void CreateSC::updateCorners(PMLComponent * pmlComponent) {
+ double bounds[6];
+ // bounds = [xmin,xmax, ymin,ymax, zmin,zmax]
+ bounds[0] = bounds[2] = bounds[4] = VTK_DOUBLE_MAX;
+ bounds[1] = bounds[3] = bounds[5] = -VTK_DOUBLE_MAX;
+
+ bool usePMLSelection = property("Use PML Selection").toBool();
+ bool usePickingSelection = property("Use Picking Selection").toBool();
+ bool boundsInitialized = false;
+
+ // restrain to the selection
+ if (usePMLSelection) {
+ // get the point selection
+ boundsInitialized = computeBoundsOfSelection(pmlComponent, "Selected Atoms", bounds);
+ // get the cell selection
+ double cellBounds[6];
+ bool cellBoundsIsNotEmpty = computeBoundsOfSelection(pmlComponent, "Selected Cells", cellBounds);
+ boundsInitialized = boundsInitialized || cellBoundsIsNotEmpty;
+ if (cellBoundsIsNotEmpty)
+ mergeBounds(cellBounds, bounds);
+ } else if (usePickingSelection) {
+ // get the point selection
+ boundsInitialized = computeBoundsOfSelection(pmlComponent, "Picked Selection", bounds);
+ }
+
+ if (!boundsInitialized) {
+ pmlComponent->getBounds(bounds);
+ }
+
+ setProperty("Bottom Corner", QVector3D(bounds[0], bounds[2], bounds[4]));
+ setProperty("Top Corner", QVector3D(bounds[1], bounds[3], bounds[5]));
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus CreateSC::apply() {
+ CAMITK_INFO("CreateSC", "apply", "Create Structural Component in " << getTargets().last()->getName().toStdString());
+
+ // set waiting cursor and status bar
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ Application::showStatusBarMessage("Creating New Structural Component...");
+ Application::resetProgressBar();
+
+ // use the last target
+ PMLComponent * pmlComponent = dynamic_cast<PMLComponent *>(getTargets().last());
+ PhysicalModel * pm = pmlComponent->getPhysicalModel();
+
+ // update corner and selection settings
+ updateCorners(pmlComponent);
+
+ // create the new component
+ StructuralComponent * selection;
+ QVector3D lower = property("Bottom Corner").value<QVector3D>();
+ QVector3D top = property("Top Corner").value<QVector3D>();
+
+ QString selectionName = property("Name Of The New Component").toString();
+ selection = new StructuralComponent(pm, selectionName.toStdString());
+ Cell * selectionC = new Cell(pm, StructureProperties::POLY_VERTEX);
+ selection->addStructure(selectionC);
+
+ unsigned int nbSelected = 0;
+ Atom * a;
+ double pos[3];
+
+ for (unsigned int i = 0; i < pm->getAtoms()->getNumberOfStructures(); i++) {
+ // get the src position
+ a = (Atom *) pm->getAtoms()->getStructure(i);
+ a->getPosition(pos);
+
+ // should it be selected
+ if (pos[0] >= lower.x() && pos[0] <= top.x() && pos[1] >= lower.y() && pos[1] <= top.y() && pos[2] >= lower.z() && pos[2] <= top.z()) {
+ selectionC->addStructureIfNotIn(a);
+ nbSelected++;
+ }
+ }
+
+ Application::showStatusBarMessage("Done Creating New Structural Component (" + QString::number(nbSelected) + " atoms selected");
+
+ // add the new SC to the informative component
+ if (!pm->getInformativeComponents()) {
+ MultiComponent * mc = new MultiComponent(pm, "Informative Components");
+ pm->setInformativeComponents(mc);
+ }
+
+ pm->getInformativeComponents()->addSubComponent(selection);
+
+ // reinitialize prop and geometry
+ pmlComponent->init();
+ pmlComponent->setModified();
+
+ Application::showStatusBarMessage("Created SC \"" + QString(selection->getName().c_str()) + "\"");
+
+ // -- refresh to show
+ Application::refresh();
+
+ // restore the normal cursor and progress bar
+ Application::resetProgressBar();
+ QApplication::restoreOverrideCursor();
+ return SUCCESS;
+}
diff --git a/modeling/actions/pml/CreateSC.h b/modeling/actions/pml/CreateSC.h
new file mode 100644
index 0000000..1b80d87
--- /dev/null
+++ b/modeling/actions/pml/CreateSC.h
@@ -0,0 +1,81 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef CREATESC_H
+#define CREATESC_H
+
+#include <Action.h>
+
+class PMLComponent;
+
+/**
+ * @ingroup group_cepmodeling_actions_mml
+ *
+ * @brief
+ * Action to generate MML/Sofa scn from a vtk mesh.
+ *
+ *
+ **/
+class CreateSC : public camitk::Action {
+
+public:
+ /// the constructor
+ CreateSC(camitk::ActionExtension* );
+
+ /// the destructor
+ virtual ~CreateSC() {};
+
+ /// use the default widget (but update the values)
+ virtual QWidget* getWidget();
+
+ /// intercept signal for dynamic property changed
+ virtual bool event(QEvent* e);
+
+public slots:
+ /// method applied when the action is called
+ virtual ApplyStatus apply();
+
+private:
+ /// compute and update bound properties (bottom and top corner) considering selection parameters
+ void updateCorners(PMLComponent *);
+
+ /// compute the bounds of a named selection
+ /// @return true if the selection exists and is not empty
+ bool computeBoundsOfSelection(PMLComponent *comp, QString selectionName, double bounds[6]);
+
+ /// compute bounds of a given point selection (list of Point Ids)
+ void computeBoundsOfPointIds(PMLComponent *comp, vtkSmartPointer<vtkIdTypeArray> selectedIds,double bounds[6]);
+
+ /// compute bounds of a given cell selection (list of cell Ids)
+ void computeBoundsOfCellIds(PMLComponent *comp, vtkSmartPointer<vtkIdTypeArray> selectedIds,double bounds[6]);
+
+ // merge 1st bounds to 2nd bounds (expand 2nd bounding box if needed)
+ void mergeBounds(double bounds1[6], double bounds2[6]);
+
+ /// if this is initialization time, do not consider any event
+ bool checkEvents;
+};
+
+#endif // CREATESC_H
diff --git a/modeling/actions/pml/PMLActionExtension.cpp b/modeling/actions/pml/PMLActionExtension.cpp
new file mode 100644
index 0000000..d5463b9
--- /dev/null
+++ b/modeling/actions/pml/PMLActionExtension.cpp
@@ -0,0 +1,38 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "PMLActionExtension.h"
+
+// include generated actions headers
+#include "PMLExplorerAction.h"
+#include "CreateSC.h"
+
+// --------------- getActions -------------------
+void PMLActionExtension::init() {
+ // Creating and registering the instance of PMLExploreAction
+ registerNewAction(PMLExplorerAction);
+ registerNewAction(CreateSC);
+}
+
diff --git a/modeling/actions/pml/PMLActionExtension.h b/modeling/actions/pml/PMLActionExtension.h
new file mode 100644
index 0000000..b455f8f
--- /dev/null
+++ b/modeling/actions/pml/PMLActionExtension.h
@@ -0,0 +1,60 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef PMLACTIONEXTENSION_H
+#define PMLACTIONEXTENSION_H
+
+#include <ActionExtension.h>
+
+class PMLActionExtension : public camitk::ActionExtension {
+ Q_OBJECT
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.modeling.action.pml")
+
+public:
+ /// Constructor
+ PMLActionExtension() : ActionExtension() {}
+
+ /// Destructor
+ virtual ~PMLActionExtension() {}
+
+ /// Method returning the action extension name
+ virtual QString getName() {
+ return "PMLExploreExtension";
+ };
+
+ /// Method returning the action extension descrption
+ virtual QString getDescription() {
+ return "Feature the actions of PML Explore which aims at displaying structural information about a PML component.";
+ };
+
+ /// initialize all the actions
+ virtual void init();
+
+};
+
+#endif // PMLACTIONEXTENSION_H
+
+
diff --git a/modeling/actions/pml/PMLExplorerAction.cpp b/modeling/actions/pml/PMLExplorerAction.cpp
new file mode 100644
index 0000000..f1e36f1
--- /dev/null
+++ b/modeling/actions/pml/PMLExplorerAction.cpp
@@ -0,0 +1,87 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+// CamiTK includes
+#include <PMLExplorerWidget.h>
+#include <Application.h>
+#include <PMLComponent.h>
+#include "PMLExplorerAction.h"
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+PMLExplorerAction::PMLExplorerAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("Explore PML Content");
+ setDescription("This action aims at exploring inner PML information (atoms, cells and components). Features a specific Qt explorer.");
+ setComponent("PMLComponent");
+
+ // Setting classification family and tag
+ setFamily("Physical Model");
+ addTag("pml");
+ addTag("physicalmodel");
+ addTag("physical");
+ addTag("physical model");
+
+ // else getWidget seg fault !
+ pmlExplorerWidget = NULL;
+
+}
+
+// --------------- destructor -------------------
+PMLExplorerAction::~PMLExplorerAction() {
+ if(pmlExplorerWidget)
+ delete pmlExplorerWidget;
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus PMLExplorerAction::apply() {
+
+ // The action itselft does not launch an algorithm, only display a widget to explore the PML component.
+ // => return always success
+ return SUCCESS;
+}
+
+// --------------- getWidget -------------------
+QWidget* PMLExplorerAction::getWidget() {
+ // The action only explores one PML component, here explore the last selected one
+ // (in case of multi component selection)
+ PMLComponent *comp = dynamic_cast<PMLComponent*>(getTargets().last());
+ if(comp) {
+ if(!pmlExplorerWidget)
+ pmlExplorerWidget = new PMLExplorerWidget(comp);
+ else
+ pmlExplorerWidget->updateTarget(comp);
+ }
+
+ return pmlExplorerWidget;
+}
\ No newline at end of file
diff --git a/modeling/actions/pml/PMLExplorerAction.h b/modeling/actions/pml/PMLExplorerAction.h
new file mode 100644
index 0000000..d82e912
--- /dev/null
+++ b/modeling/actions/pml/PMLExplorerAction.h
@@ -0,0 +1,68 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef PMLEXPLOREACTION_H
+#define PMLEXPLOREACTION_H
+
+// Camitk includes
+#include <Action.h>
+
+class PMLExplorerWidget;
+class PMLComponent;
+
+class PMLExplorerAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ PMLExplorerAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~PMLExplorerAction();
+
+ /// @{
+ /// @name Reimplemented from camitk::Action class
+ /// Returns a QTreeWidget that displays in a tree view the PML component structure.
+ QWidget* getWidget();
+ /// @}
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of PMLExploreAction (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+
+ /// The widget of this action.
+ /// Based on a Qt TreeView widget, allows to explore the PML structure.
+ PMLExplorerWidget* pmlExplorerWidget;
+
+};
+
+#endif // PMLEXPLOREACTION_H
+
diff --git a/modeling/actions/pml/PMLExplorerWidget.cpp b/modeling/actions/pml/PMLExplorerWidget.cpp
new file mode 100644
index 0000000..42628a1
--- /dev/null
+++ b/modeling/actions/pml/PMLExplorerWidget.cpp
@@ -0,0 +1,644 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "ui_PmlExplorerWidget.h"
+#include "ui_AddNewPropertyWidget.h"
+#include "PMLExplorerWidget.h"
+#include "CamiTKPropertyList.h"
+
+//CamiTK includes
+#include <PMLComponent.h>
+#include <PhysicalModel.h>
+#include <MultiComponent.h>
+#include <StructuralComponent.h>
+#include <Atom.h>
+#include <Cell.h>
+#include <CellProperties.h>
+#include <Log.h>
+
+#include <ObjectController.h>
+
+// Qt includes
+#include <QTreeWidgetItem>
+#include <QPixmap>
+#include <QMap>
+#include <QVector3D>
+#include <QDialog>
+
+// vtk
+#include <vtkPointData.h>
+
+// --------------- constructor -------------------
+PMLExplorerWidget::PMLExplorerWidget ( PMLComponent * comp ) : QWidget() {
+ ui = new Ui::ui_PmlExplorerWidget();
+ ui->setupUi ( this );
+
+ objectController = new camitk::ObjectController ( ui->propEditorFrame, camitk::ObjectController::BUTTON );
+ ui->propEditorFrame->layout()->addWidget ( objectController );
+
+ // connect the buttons
+ QObject::connect ( ui->applyButton, SIGNAL ( clicked() ), objectController, SLOT ( apply() ) );
+ QObject::connect ( ui->applyButton, SIGNAL ( clicked() ), this, SLOT ( propertyChanged() ) );
+ QObject::connect ( ui->revertButton, SIGNAL ( clicked() ), objectController, SLOT ( revert() ) );
+ QObject::connect ( ui->addButton, SIGNAL ( clicked() ), this, SLOT ( createNewProperty() ) );
+ QObject::connect ( ui->showAtomGlyphCB, SIGNAL ( toggled ( bool ) ), this, SLOT ( showAtomGlyphToggled ( bool ) ) );
+
+ physicalModelItem = NULL;
+ atomsItem = NULL;
+ exclusiveComponentItem = NULL;
+ informativeComponentItem = NULL;
+ init ( comp );
+}
+
+// --------------- Destructor -------------------
+PMLExplorerWidget::~PMLExplorerWidget() {
+ delete objectController;
+ objectController = NULL;
+
+ foreach ( QObject * o, widgetPropertiesMap ) {
+ delete o;
+ }
+
+ if ( ui ) {
+ delete ui;
+ }
+}
+
+// --------------- buildPhysicalModelTreeWidgetItem -------------------
+void PMLExplorerWidget::buildPhysicalModelTreeWidgetItem() {
+ // This can't take time on big PML file
+ QApplication::setOverrideCursor ( Qt::WaitCursor );
+
+ editedItem = NULL;
+
+ // create the main PhysicalModel node
+ physicalModelItem = new QTreeWidgetItem ( ui->treeWidget );
+
+ // get extra text from unknown prop added on the atom
+ QString extraProp ( "" );
+
+ for ( unsigned int prop_index = 0; prop_index < physicalModel->getProperties()->numberOfFields(); prop_index++ ) {
+ extraProp += "[" + QString ( physicalModel->getProperties()->getField ( prop_index ).c_str() ) + " = " + QString ( physicalModel->getProperties()->getString ( physicalModel->getProperties()->getField ( prop_index ) ).c_str() ) + "]";
+ }
+
+ QString pmlText = "Physical Model \"" + QString ( physicalModel->getName().c_str() );
+ physicalModelItem->setText ( 0, pmlText + extraProp );
+ physicalModelItem->setIcon ( 0, pmlComponent->getIcon() );
+
+ // Create the Atoms structure Tree wigdet
+ atomsItem = buildStructuralComponentTreeWidgetItem ( physicalModel->getAtoms(), physicalModelItem );
+
+ // Create the Exclusive components Tree wigdet
+ exclusiveComponentItem = buildMultiComponentTreeWidgetItem ( physicalModel->getExclusiveComponents(), physicalModelItem );
+
+ // informative components
+ if ( physicalModel->getNumberOfInformativeComponents() > 0 ) {
+ // Create the Informative components Tree wigdet
+ informativeComponentItem = buildMultiComponentTreeWidgetItem ( physicalModel->getInformativeComponents(), physicalModelItem );
+ }
+
+ QApplication::restoreOverrideCursor();
+}
+
+
+// --------------- buildMultiComponentTreeWidgetItem -------------------
+QTreeWidgetItem * PMLExplorerWidget::buildMultiComponentTreeWidgetItem ( MultiComponent * inputMC, QTreeWidgetItem * parent ) {
+ // Add the current item in the QTreeView list
+ QTreeWidgetItem * mcItem = new QTreeWidgetItem ( parent );
+ widgetComponentMap.insert ( mcItem, inputMC );
+
+ mcItem->setText ( 0, inputMC->getName().c_str() );
+ mcItem->setIcon ( 0, QPixmap ( ":/MultiComponentIcon" ) );
+
+ // recursively consider sub components
+ for ( unsigned int i = 0; i < inputMC->getNumberOfSubComponents(); i++ ) {
+ if ( MultiComponent * mc = dynamic_cast<MultiComponent *> ( inputMC->getSubComponent ( i ) ) ) {
+ buildMultiComponentTreeWidgetItem ( mc, mcItem );
+ } else if ( StructuralComponent * sc = dynamic_cast<StructuralComponent *> ( inputMC->getSubComponent ( i ) ) ) {
+ buildStructuralComponentTreeWidgetItem ( sc, mcItem );
+ }
+ }
+
+ return mcItem;
+}
+
+// --------------- buildStructuralComponentTreeWidgetItem -------------------
+QTreeWidgetItem * PMLExplorerWidget::buildStructuralComponentTreeWidgetItem ( StructuralComponent * sc, QTreeWidgetItem * parent ) {
+ // Add the structural item in the QTreeView list
+ QTreeWidgetItem * scItem = new QTreeWidgetItem ( parent );
+ widgetComponentMap.insert ( scItem, sc );
+
+ scItem->setText ( 0, sc->getName().c_str() );
+ scItem->setIcon ( 0, QPixmap ( ":/StructuralComponentIcon" ) );
+
+ // add its atoms / cells content
+ for ( unsigned int i = 0; i < sc->getNumberOfStructures(); i++ ) {
+ if ( Atom * a = dynamic_cast<Atom *> ( sc->getStructure ( i ) ) ) {
+ buildAtomTreeWidgetItem ( a, scItem );
+ } else if ( Cell * c = dynamic_cast<Cell *> ( sc->getStructure ( i ) ) ) {
+ buildCellTreeWidgetItem ( c, scItem );
+ }
+ }
+
+ return scItem;
+}
+
+// --------------- buildAtomTreeWidgetItem -------------------
+QTreeWidgetItem * PMLExplorerWidget::buildAtomTreeWidgetItem ( Atom * atom, QTreeWidgetItem * parent ) {
+ QTreeWidgetItem * atomItem = new QTreeWidgetItem ( parent );
+ widgetAtomMap.insert ( atomItem, atom );
+
+ QString atomItemText = "Atom #" + QString::number ( atom->getIndex() );
+ atomItem->setText ( 0, atomItemText );
+ atomItem->setIcon ( 0, QPixmap ( ":/AtomIcon" ) );
+
+ return atomItem;
+}
+
+// --------------- buildCellTreeWidgetItem -------------------
+QTreeWidgetItem * PMLExplorerWidget::buildCellTreeWidgetItem ( Cell * cell, QTreeWidgetItem * parent ) {
+ QTreeWidgetItem * cellItem = new QTreeWidgetItem ( parent );
+ widgetComponentMap.insert ( cellItem, cell );
+ QString cellItemText = "Cell ";
+
+ if ( cell->hasIndex ) {
+ cellItemText += "#" + QString::number ( cell->getIndex() );
+ }
+
+ cellItem->setText ( 0, cellItemText );
+ cellItem->setIcon ( 0, QPixmap ( ":/CellIcon" ) );
+
+ // Add the cell's atoms
+ for ( unsigned int i = 0; i < cell->getNumberOfStructures(); i++ ) {
+ if ( Atom * a = dynamic_cast<Atom *> ( cell->getStructure ( i ) ) ) {
+ buildAtomTreeWidgetItem ( a, cellItem );
+ }
+ }
+
+ return cellItem;
+
+}
+
+// --------------- showAtomGlyphToggled -------------------
+void PMLExplorerWidget::showAtomGlyphToggled ( bool checkBoxState ) {
+ showAtomGlyph = checkBoxState;
+ selectItems();
+}
+
+// --------------- selectItems -------------------
+void PMLExplorerWidget::selectItems() {
+ QApplication::setOverrideCursor ( Qt::WaitCursor );
+
+ // First, unselect all previously selected items
+ pmlComponent->unselectItems();
+
+ // let's find out the corresponding Atom, SC, MC or Cell selected and ask to select them in the 3D structure
+ QList<QTreeWidgetItem *> itemsSelected = ui->treeWidget->selectedItems();
+
+ foreach ( QTreeWidgetItem * item, itemsSelected ) {
+ if ( widgetAtomMap.contains ( item ) ) {
+ // Is it an atom ?
+ Atom * atomSelected = widgetAtomMap.value ( item );
+ pmlComponent->selectAtom ( atomSelected );
+ // create the corresponding QObject
+ updateProperty ( item );
+ } else if ( widgetComponentMap.contains ( item ) ) {
+ Component * comp = widgetComponentMap.value ( item );
+
+ if ( Cell * cellSelected = dynamic_cast<Cell *> ( comp ) ) { // Is it a cell ?
+ pmlComponent->selectCell ( cellSelected, showAtomGlyph );
+ } else if ( MultiComponent * mc = dynamic_cast<MultiComponent *> ( comp ) ) { // Is it a MC ?
+ pmlComponent->selectMC ( mc, showAtomGlyph );
+ } else if ( StructuralComponent * sc = dynamic_cast<StructuralComponent *> ( comp ) ) { // Is it a SC ?
+ pmlComponent->selectSC ( sc, showAtomGlyph );
+ }
+
+ // create the corresponding QObject
+ updateProperty ( item );
+ }
+ // in any case (even for item == physicalModelItem), update the property
+ updateProperty ( item );
+ }
+
+ pmlComponent->updateSelection();
+ pmlComponent->refreshDisplay();
+
+ QApplication::restoreOverrideCursor();
+}
+
+// --------------- updateTargets -------------------
+void PMLExplorerWidget::updateTarget ( PMLComponent * comp ) {
+ editedItem = NULL;
+ objectController->setObject ( NULL );
+ // Disconnect the selection changed signal, avoiding
+ // vicious bugs (Qt slots thread may call signal method while
+ // constructing the tree content).
+ disconnect ( ui->treeWidget, SIGNAL ( itemSelectionChanged() ), this, SLOT ( selectItems() ) );
+
+ foreach ( QObject * o, widgetPropertiesMap ) {
+ delete o;
+ }
+ foreach ( QObject * o, atomPropertiesMap ) {
+ delete o;
+ }
+
+ // Clear maps content
+ widgetAtomMap.clear();
+ widgetComponentMap.clear();
+ widgetPropertiesMap.clear();
+ atomPropertiesMap.clear();
+
+ // Clear the tree content (remove items and delete them)
+ ui->treeWidget->clear();
+ physicalModelItem = NULL;
+ atomsItem = NULL;
+ exclusiveComponentItem = NULL;
+ informativeComponentItem = NULL;
+
+ init ( comp );
+}
+
+// --------------- init -------------------
+void PMLExplorerWidget::init ( PMLComponent * comp ) {
+ // Build back the tree for the new component
+ pmlComponent = comp;
+ this->physicalModel = comp->getPhysicalModel();
+
+ // build the tree view
+ buildPhysicalModelTreeWidgetItem();
+
+ // show/display the first level
+ physicalModelItem->setExpanded ( true );
+ exclusiveComponentItem->setExpanded ( true );
+
+ if ( exclusiveComponentItem->childCount() > 0 ) {
+ exclusiveComponentItem->child ( 0 )->setExpanded ( true );
+ }
+
+ if ( informativeComponentItem ) {
+ informativeComponentItem->setExpanded ( true );
+
+ if ( informativeComponentItem->childCount() > 0 ) {
+ informativeComponentItem->child ( 0 )->setExpanded ( true );
+ }
+ }
+
+ ui->treeWidget->setHeaderLabel ( comp->getName() );
+
+ // Reconnect back the SLOT
+ connect ( ui->treeWidget, SIGNAL ( itemSelectionChanged() ), this, SLOT ( selectItems() ) );
+
+ // reset the atom glyph status
+ showAtomGlyph = ui->showAtomGlyphCB->isChecked();
+}
+
+// --------------- updateProperty -------------------
+void PMLExplorerWidget::updateProperty ( QTreeWidgetItem * item ) {
+ // get or create
+ QObject * itemProperties = widgetPropertiesMap.value ( item );
+
+ // update properties
+ if ( !itemProperties ) {
+ if ( widgetAtomMap.contains ( item ) ) {
+ Atom * a = widgetAtomMap.value ( item );
+ if ( a ) {
+ // check if this atom already has an list of properties
+ itemProperties = atomPropertiesMap.value ( a );
+ // always recreate the property list as there might be some new data array
+ delete itemProperties;
+ itemProperties = createAtomPropertyList ( a );
+ atomPropertiesMap.insert ( a,itemProperties );
+ }
+ } else if ( widgetComponentMap.contains ( item ) ) {
+ Component * comp = widgetComponentMap.value ( item );
+
+ // cell properties
+ if ( Cell * c = dynamic_cast<Cell*> ( comp ) ) {
+ itemProperties = createCellPropertyList ( c );
+ } else if ( StructuralComponent * sc = dynamic_cast<StructuralComponent*> ( comp ) ) {
+ itemProperties = createSCPropertyList ( sc );
+ } else if ( MultiComponent *mc = dynamic_cast<MultiComponent*> ( comp ) ) {
+ itemProperties = createMCPropertyList ( mc );
+ }
+
+ // insert the new property list in the map
+ widgetPropertiesMap.insert ( item, itemProperties );
+
+ } else if ( item == physicalModelItem ) {
+ // the component has already set all the dynamic properties
+ itemProperties = pmlComponent;
+ } else {
+ editedItem = NULL;
+ }
+ }
+ // update the ObjectController
+ editedItem = item;
+ objectController->setObject ( itemProperties );
+
+}
+
+// --------------- createNewProperty -------------------
+void PMLExplorerWidget::createNewProperty() {
+ if ( editedItem != NULL ) {
+ QDialog *newPropertyDialog = new QDialog ( this );
+ Ui::ui_AddNewPropertyWidget addNewPropertyUI;
+ addNewPropertyUI.setupUi ( newPropertyDialog );
+ newPropertyDialog->setModal ( true );
+ QRegExp noSpaceStartWithLetter("[a-z][a-z0-9-_]*");
+ noSpaceStartWithLetter.setCaseSensitivity(Qt::CaseInsensitive);
+ addNewPropertyUI.nameLineEdit->setValidator(new QRegExpValidator(noSpaceStartWithLetter));
+
+ if ( newPropertyDialog->exec() == QDialog::Accepted ) {
+ QString propName = addNewPropertyUI.nameLineEdit->text();
+ QString propValue = addNewPropertyUI.valueLineEdit->text();
+ camitk::Property *newProp = new camitk::Property ( propName, propValue, "", "" );
+ if ( editedItem == physicalModelItem ) {
+ physicalModel->getProperties()->set ( propName.toStdString(), propValue.toStdString() );
+ pmlComponent->addProperty ( newProp );
+ // update object controller
+ objectController->setObject ( NULL );
+ objectController->setObject ( pmlComponent );
+ } else {
+ QObject * editedObject;
+ if ( Atom * a = widgetAtomMap.value ( editedItem ) ) {
+ editedObject = atomPropertiesMap.value ( a );
+
+ } else if ( widgetComponentMap.contains ( editedItem ) ) {
+ editedObject = widgetPropertiesMap.value ( editedItem );
+
+ }
+ CamiTKPropertyList *propList = dynamic_cast<CamiTKPropertyList *> ( editedObject );
+ propList->addProperty ( newProp );
+ // update object controller
+ objectController->setObject ( NULL );
+ objectController->setObject ( propList );
+ }
+
+ }
+
+ delete newPropertyDialog;
+ }
+}
+
+// --------------- createAtomPropertyList -------------------
+CamiTKPropertyList* PMLExplorerWidget::createAtomPropertyList ( Atom* a ) {
+ CamiTKPropertyList* itemProperties = new CamiTKPropertyList;
+
+ // index
+ camitk::Property *indexProp = new camitk::Property ( "index", QVariant ( ( int ) a->getIndex() ), "Unique index of the atom (can be different than its order number in the atom structure, atom indexes do not have to be contiguous). <br/><b>WARNING :</b> if physical model not valid if two atoms have the same index, becareful when you modify this value!", "unsigned int" );
+ itemProperties->addProperty ( indexProp );
+
+ // position
+ double pos[3];
+ a->getPosition ( pos );
+ itemProperties->addProperty ( new camitk::Property ( "Position", QVector3D ( pos[0], pos[1], pos[2] ), "Atom properties", "same unit as the PML" ) );
+
+ // atom name
+ QString atomName ( a->getName().c_str() );
+ if ( atomName != "" ) {
+ itemProperties->addProperty ( new camitk::Property ( "name", atomName , "(optional) name of this atom", "" ) );
+ }
+
+ // get extra prop
+ for ( unsigned int propIndex = 0; propIndex < a->getProperties()->numberOfFields(); propIndex++ ) {
+ itemProperties->addProperty ( new camitk::Property ( a->getProperties()->getField ( propIndex ).c_str(), QString ( a->getProperties()->getString ( a->getProperties()->getField ( propIndex ) ).c_str() ) , "Additional property", "" ) );
+ }
+
+ // add all data array value
+ vtkSmartPointer<vtkPointData> allPointData = pmlComponent->getPointSet()->GetPointData();
+ std::string activeDataName;
+ if (allPointData->GetScalars()) {
+ activeDataName = allPointData->GetScalars()->GetName();
+ }
+ for (int i=0; i<allPointData->GetNumberOfArrays(); i++) {
+ vtkSmartPointer<vtkDataArray> array = allPointData->GetArray(i);
+ std::string arrayName = array->GetName();
+ std::string dataName = "Monitoring Data";
+ bool isActive = (activeDataName.compare(arrayName) == 0);
+ // check if this array is the active one
+ if (isActive) {
+ arrayName += " (*)";
+ dataName += " (active/displayed data point)";
+ }
+ double * val = array->GetTuple(pmlComponent->getPointId(a));
+ camitk::Property *dataProp = new camitk::Property(arrayName.c_str() , *val, dataName.c_str(), "");
+ dataProp->setGroupName("Monitors");
+ itemProperties->addProperty(dataProp);
+ }
+
+ return itemProperties;
+}
+
+// --------------- createCellPropertyList -------------------
+CamiTKPropertyList* PMLExplorerWidget::createCellPropertyList ( Cell* c ) {
+ CamiTKPropertyList* itemProperties = new CamiTKPropertyList;
+
+ // index
+ camitk::Property *indexProp = new camitk::Property ( "index", QVariant ( ( int ) c->getIndex() ), "Unique index of the cell (can be totally arbirtrary, cell indexes do not have to be contiguous)", "unsigned int" );
+ indexProp->setReadOnly ( true );
+ itemProperties->addProperty ( indexProp );
+
+ // number of structures
+ camitk::Property *nbOfStructureProp = new camitk::Property ( "Number Of Atoms", QVariant ( ( int ) c->getNumberOfStructures() ) , "Number of atoms composing this cell (linked with the cell type)", "" );
+ nbOfStructureProp->setReadOnly ( true );
+ itemProperties->addProperty ( nbOfStructureProp );
+
+ camitk::Property *typeProp = new camitk::Property ( "Type", StructureProperties::toString ( c->getProperties()->getType() ).c_str() , "Geometric Type", "" );
+ typeProp->setReadOnly ( true );
+ itemProperties->addProperty ( typeProp );
+
+ // cell name
+ QString cellName ( ( ( Structure* ) c )->getName().c_str() );
+ if ( cellName != "" ) {
+ itemProperties->addProperty ( new camitk::Property ( "name", cellName , "(optional) name of this cell", "" ) );
+ }
+
+ /* TODO manage read-write color, add this property + on update modify the physicalModel data + interactively change the VTK representation
+ double *cellColorValues;
+ cellColorValues = c->getColor();
+ QColor cellColor(cellColorValues[0], cellColorValues[1], cellColorValues[2], cellColorValues[3]);
+ camitk::Property *colorProp = new camitk::Property("Color", cellColor, "Color of the cell (not always visible)", "");
+ itemProperties->addProperty(colorProp);
+
+ */
+
+ // get extra prop
+ for ( unsigned int propIndex = 0; propIndex < c->getProperties()->numberOfFields(); propIndex++ ) {
+ itemProperties->addProperty ( new camitk::Property ( c->getProperties()->getField ( propIndex ).c_str(), QString ( c->getProperties()->getString ( c->getProperties()->getField ( propIndex ) ).c_str() ) , "Additional property", "" ) );
+ }
+
+ return itemProperties;
+}
+
+// --------------- createSCPropertyList -------------------
+CamiTKPropertyList* PMLExplorerWidget::createSCPropertyList ( StructuralComponent* sc ) {
+ CamiTKPropertyList* itemProperties = new CamiTKPropertyList;
+
+ // sc name
+ QString scName ( sc->getName().c_str() );
+ if ( scName != "" ) {
+ itemProperties->addProperty ( new camitk::Property ( "name", scName , "(optional) name of this structural component", "" ) );
+ }
+
+ // composed by
+ QString composedByValue;
+ switch ( sc->composedBy() ) {
+ case StructuralComponent::ATOMS:
+ composedByValue = "Atoms";
+ break;
+ case StructuralComponent::CELLS:
+ composedByValue = "Cells";
+ break;
+ default:
+ composedByValue = "Nothing !";
+ }
+ camitk::Property *composedByProp = new camitk::Property ( "Composed By", composedByValue, "Nature of the structures (cells or atoms)", "" );
+ composedByProp->setReadOnly ( true );
+ itemProperties->addProperty ( composedByProp );
+
+ // number of structures
+ camitk::Property *nbOfStructureProp = new camitk::Property ( "Number Of Structures", QVariant ( ( int ) sc->getNumberOfStructures() ) , "Number of cells or atoms (depending on the nature of the structure) composing this structural component", "" );
+ nbOfStructureProp->setReadOnly ( true );
+ itemProperties->addProperty ( nbOfStructureProp );
+
+ // RO color
+ double *scColorValues;
+ scColorValues = sc->getColor();
+ QColor cellColor ( scColorValues[0], scColorValues[1], scColorValues[2], scColorValues[3] );
+ camitk::Property *colorProp = new camitk::Property ( "Color", cellColor, "Color of the structural component (not always visible)", "" );
+ colorProp->setReadOnly ( true );
+ itemProperties->addProperty ( colorProp );
+
+ // get extra prop
+ for ( unsigned int propIndex = 0; propIndex < sc->getProperties()->numberOfFields(); propIndex++ ) {
+ itemProperties->addProperty ( new camitk::Property ( sc->getProperties()->getField ( propIndex ).c_str(), QString ( sc->getProperties()->getString ( sc->getProperties()->getField ( propIndex ) ).c_str() ) , "Additional property", "" ) );
+ }
+
+ return itemProperties;
+}
+
+// --------------- createMCPropertyList -------------------
+CamiTKPropertyList* PMLExplorerWidget::createMCPropertyList ( MultiComponent* mc ) {
+ CamiTKPropertyList* itemProperties = new CamiTKPropertyList;
+
+ // mc name
+ QString mcName ( mc->getName().c_str() );
+ if ( mcName != "" ) {
+ itemProperties->addProperty ( new camitk::Property ( "name", mcName , "(optional) name of this multi-component", "" ) );
+ }
+
+ // number of subcomponents
+ camitk::Property *nbOfComponentProp = new camitk::Property ( "Number Of Subcomponents", QVariant ( ( int ) mc->getNumberOfSubComponents() ) , "Number of subcomponents composing this multi-component", "" );
+ nbOfComponentProp->setReadOnly ( true );
+ itemProperties->addProperty ( nbOfComponentProp );
+
+ // get extra prop
+ for ( unsigned int propIndex = 0; propIndex < mc->getProperties()->numberOfFields(); propIndex++ ) {
+ itemProperties->addProperty ( new camitk::Property ( mc->getProperties()->getField ( propIndex ).c_str(), QString ( mc->getProperties()->getString ( mc->getProperties()->getField ( propIndex ) ).c_str() ) , "Additional property", "" ) );
+ }
+
+ return itemProperties;
+}
+
+
+// --------------- propertyChanged -------------------
+void PMLExplorerWidget::propertyChanged() {
+
+ if ( editedItem == physicalModelItem ) {
+ // in the case of the physicalModelItem, nothing to do, this will be taken into account by the property explorer of the component, just refres
+ pmlComponent->refresh();
+ } else {
+
+ if ( Atom * a = widgetAtomMap.value ( editedItem ) ) {
+ QObject * editedObject = atomPropertiesMap.value ( a );
+ CamiTKPropertyList *propList = dynamic_cast<CamiTKPropertyList *> ( editedObject );
+
+ QVector3D pos = propList->property ( "Position" ).value<QVector3D>();
+ a->setPosition ( pos.x(), pos.y(), pos.z() );
+
+ QString name = propList->property ( "name" ).value<QString>();
+ if ( !name.isEmpty() ) {
+ a->setName ( name.toStdString() );
+ }
+
+ int index = propList->property ( "index" ).value<int>();
+ a->setIndex ( index );
+
+ // all other properties
+ for ( unsigned int i=0; i<propList->getNumberOfProperties(); i++ ) {
+ QString propName = propList->getProperty ( i )->getName();
+ if ( propName != "index" && propName != "Position" && propName != "name" && !propList->getProperty ( i )->getReadOnly() ) {
+ // any other property
+ QString value = propList->property ( propName.toStdString().c_str() ).value<QString>();
+ a->getProperties()->set ( propName.toStdString(), value.toStdString() );
+ }
+ }
+
+ // just in case the position was changed, refresh the whole scene
+ pmlComponent->refreshDisplay();
+
+ } else if ( widgetComponentMap.contains ( editedItem ) ) {
+ QObject * editedObject = widgetPropertiesMap.value ( editedItem );
+ CamiTKPropertyList *propList = dynamic_cast<CamiTKPropertyList *> ( editedObject );
+
+ Component * comp = widgetComponentMap.value ( editedItem );
+ QString name = propList->property ( "name" ).value<QString>();
+
+ if ( Cell * c = dynamic_cast<Cell*> ( comp ) ) {
+ ( ( Structure * ) c )->setName ( name.toStdString() );
+ // all other properties
+ for ( unsigned int i=0; i<propList->getNumberOfProperties(); i++ ) {
+ QString propName = propList->getProperty ( i )->getName();
+ if ( propName != "name" && !propList->getProperty ( i )->getReadOnly() ) {
+ // any other property
+ QString value = propList->property ( propName.toStdString().c_str() ).value<QString>();
+ c->getProperties()->set ( propName.toStdString(), value.toStdString() );
+ }
+ }
+ } else {
+ comp->setName ( name.toStdString() );
+ // all other properties
+ for ( unsigned int i=0; i<propList->getNumberOfProperties(); i++ ) {
+ QString propName = propList->getProperty ( i )->getName();
+ if ( propName != "name" && !propList->getProperty ( i )->getReadOnly() ) {
+ // any other property
+ QString value = propList->property ( propName.toStdString().c_str() ).value<QString>();
+ comp->getProperties()->set ( propName.toStdString(), value.toStdString() );
+ }
+ }
+ }
+ }
+ }
+
+ pmlComponent->setModified();
+}
+
+
+
+
+
+
+
+
diff --git a/modeling/actions/pml/PMLExplorerWidget.h b/modeling/actions/pml/PMLExplorerWidget.h
new file mode 100644
index 0000000..8ca2831
--- /dev/null
+++ b/modeling/actions/pml/PMLExplorerWidget.h
@@ -0,0 +1,203 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef PMLEXPLORERWIDGET_H
+#define PMLEXPLORERWIDGET_H
+
+// Qt includes
+#include <QWidget>
+#include <QMap>
+class QTreeWidgetItem;
+
+// Qt Designer generated .ui
+namespace Ui {
+class ui_PmlExplorerWidget;
+}
+
+namespace camitk {
+class ObjectController;
+}
+
+// CamiTK forward declaration
+class PMLComponent;
+class CamiTKPropertyList;
+
+// Pml forward declaration
+class PhysicalModel;
+class MultiComponent;
+class StructuralComponent;
+class Atom;
+class Cell;
+class Component;
+
+
+/** This class is the Pml explore action widget presented/controller.
+ * It allows to map the graphical treeview widget from the pml object.
+ *
+ * Considering the MVP pattern:
+ * - M = the PMLComponent and the PhysicalModel instances it encapsulates
+ * - V = the Qt Widget build using Qt Designer (ui_pmlExploreWidget)
+ * - P = this class, it uses the data in the PMLComponent/PhysicalModel to build the
+ * GUI representation (update the widget) and use the user feedback to modify the
+ * PMLComponent/PhysicalModel.
+ */
+class PMLExplorerWidget : public QWidget {
+ Q_OBJECT
+
+public:
+ /// Constructor
+ PMLExplorerWidget ( PMLComponent * comp );
+
+ /// Destructor
+ virtual ~PMLExplorerWidget(); //{ if (this->ui) delete ui; }
+
+ /// Update the widget content as the input selected component changed.
+ void updateTarget ( PMLComponent * comp );
+
+public slots:
+ /// called when the user click on apply in the object controller
+ void propertyChanged();
+
+ /// called when the user click on new in the object controller
+ void createNewProperty();
+
+ /// This slot is connected to the corresponding UI Checkbox, update the showAtomGlyph state
+ void showAtomGlyphToggled(bool);
+
+private slots:
+
+ /// The slot defined to select the QTreeWidgetItem in its corresponding pml element (SC, MC, Atom or Cell)
+ /// to correctly highlight it in the 3D structure and display its properties.
+ void selectItems();
+
+private:
+ /// The PML Component associated with the action.
+ PMLComponent * pmlComponent;
+
+ /// The PML Component to explore with the action
+ PhysicalModel * physicalModel;
+
+ /// The graphical user interface automatically generated by the moc and QtDesigner.
+ Ui::ui_PmlExplorerWidget * ui;
+
+ /// A pml::component <-> QTreeWidgetItem map to find out, once selected the corresponding pml::Component
+ /// (StructuralComponent, MultiComponent or Cell) associated to the QTreeWidgetItem.
+ QMap<QTreeWidgetItem *, Component *> widgetComponentMap;
+
+ /// A pml::Atom <-> QTreeWidgetItem map to find out, once selected the corresponding pml::Atom associated
+ /// to the QTreeWidgetItem.
+ QMap<QTreeWidgetItem *, Atom *> widgetAtomMap;
+
+ /// Map QTreeWidgetItem <-> CamiTKPropertyList for all PML components (Cell, SC, MC).
+ /// A CamiTKPropertyList is build if not already build, it allows the user to interact with
+ /// the physical model field attributes/properties using the explorer's ObjectController.
+ /// This is only used for PML components (Cell, SC, MC) not for atoms
+ /// The only exception is for the PMLComponent holding the top-level physicalModel properties:
+ /// it is not a CamiTKPropertyList but directly a QObject
+ QMap<QTreeWidgetItem *, QObject *> widgetPropertiesMap;
+
+ /// Map QTreeWidgetItem <-> CamiTKPropertyList for atom
+ /// For the atoms, there is only one CamiTKPropertyList per atom
+ QMap<Atom*, QObject*> atomPropertiesMap;
+
+ /// build a QObject from physical model properties
+ void updateProperty ( QTreeWidgetItem* );
+
+ /// the QObject are displaying properties in the ObjectController
+ camitk::ObjectController * objectController;
+
+ /// item being currently edited
+ QTreeWidgetItem *editedItem;
+
+ /// the state of the show atom glyph checkbox
+ bool showAtomGlyph;
+
+ /// @name Tree widget item management
+ ///@{
+
+ /// initialize component, physicalmodel and interaction
+ void init ( PMLComponent * );
+
+ /// The main tree widget items, at the base of the structure
+ QTreeWidgetItem * physicalModelItem;
+
+ /// the atom SC tree widget item
+ QTreeWidgetItem * atomsItem;
+
+ /// the exclusive component MC tree widget item
+ QTreeWidgetItem * exclusiveComponentItem;
+
+ /// the informative component MC tree widget item
+ QTreeWidgetItem * informativeComponentItem;
+
+ /// Parse the basic contents of the PML component: its atoms, exclusive and informative components
+ /// and call other methods to fill the widget with the pml structure.
+ /// @return the top-level item
+ void buildPhysicalModelTreeWidgetItem();
+
+ /// Recursive method to add an entry for the current multicomponent to the widget.
+ /// @param multiComponent the current multiComponent to add to the widget
+ /// @param parent the parent QTreeWidgetItem
+ /// @return the top-level item
+ QTreeWidgetItem * buildMultiComponentTreeWidgetItem ( MultiComponent * multiComponent, QTreeWidgetItem * parent );
+
+ /// Add an entry for the current structural component to the widget.
+ /// @param sc the current structural component to add to the widget
+ /// @param parent the parent QTreeWidgetItem
+ /// @return the top-level item
+ QTreeWidgetItem * buildStructuralComponentTreeWidgetItem ( StructuralComponent * sc, QTreeWidgetItem * parent );
+
+ /// Add an entry for the current cell to the widget
+ /// @param cell the current cell parsed to add to the widget
+ /// @param parent the parent QTreeWidgetItem
+ /// @return the top-level item
+ QTreeWidgetItem * buildCellTreeWidgetItem ( Cell * cell, QTreeWidgetItem * parent );
+
+ /// Add an entry for the current atom to the widget
+ /// @param atom the current atom parsed to add to the widget
+ /// @param parent the parent QTreeWidgetItem
+ /// @return the atom item
+ QTreeWidgetItem * buildAtomTreeWidgetItem ( Atom * atom, QTreeWidgetItem * parent );
+ ///@}
+
+ /// @name PML components and atoms properties
+ ///@{
+ /// Creates a CamiTKPropertyList for this atom or get the existing one
+ CamiTKPropertyList* createAtomPropertyList(Atom *);
+
+ /// Creates a CamiTKPropertyList for this cell or get the existing one
+ CamiTKPropertyList* createCellPropertyList(Cell *);
+
+ /// Creates a CamiTKPropertyList for this MC or get the existing one
+ CamiTKPropertyList* createMCPropertyList(MultiComponent *);
+
+ /// Creates a CamiTKPropertyList for this SC or get the existing one
+ CamiTKPropertyList* createSCPropertyList(StructuralComponent *);
+
+ ///@}
+};
+
+
+#endif // PMLEXPLORERWIDGET_H
\ No newline at end of file
diff --git a/modeling/actions/pml/PmlExplorerWidget.ui b/modeling/actions/pml/PmlExplorerWidget.ui
new file mode 100644
index 0000000..427d85a
--- /dev/null
+++ b/modeling/actions/pml/PmlExplorerWidget.ui
@@ -0,0 +1,157 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>ui_PmlExplorerWidget</class>
+ <widget class="QWidget" name="ui_PmlExplorerWidget">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>264</width>
+ <height>404</height>
+ </rect>
+ </property>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="windowTitle">
+ <string>PML Explore</string>
+ </property>
+ <property name="layoutDirection">
+ <enum>Qt::LeftToRight</enum>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout">
+ <item>
+ <widget class="QTreeWidget" name="treeWidget">
+ <property name="enabled">
+ <bool>true</bool>
+ </property>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>0</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>16777215</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="dragEnabled">
+ <bool>false</bool>
+ </property>
+ <property name="selectionMode">
+ <enum>QAbstractItemView::ExtendedSelection</enum>
+ </property>
+ <property name="animated">
+ <bool>true</bool>
+ </property>
+ <property name="columnCount">
+ <number>1</number>
+ </property>
+ <column>
+ <property name="text">
+ <string notr="true">Physical Model Explorer</string>
+ </property>
+ </column>
+ </widget>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_2">
+ <item>
+ <widget class="QCheckBox" name="showAtomGlyphCB">
+ <property name="toolTip">
+ <string>If checked, display a glyph on the atoms composing the current selection</string>
+ </property>
+ <property name="whatsThis">
+ <string>If checked, display a glyph on the atoms composing the current selection</string>
+ </property>
+ <property name="text">
+ <string>Show Atom Glyph</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <widget class="QFrame" name="editorFrame">
+ <property name="frameShape">
+ <enum>QFrame::StyledPanel</enum>
+ </property>
+ <property name="frameShadow">
+ <enum>QFrame::Raised</enum>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_4">
+ <item>
+ <widget class="QFrame" name="propEditorFrame">
+ <property name="frameShape">
+ <enum>QFrame::StyledPanel</enum>
+ </property>
+ <property name="frameShadow">
+ <enum>QFrame::Raised</enum>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_2"/>
+ </widget>
+ </item>
+ <item>
+ <widget class="QFrame" name="buttonFrame">
+ <property name="frameShape">
+ <enum>QFrame::StyledPanel</enum>
+ </property>
+ <property name="frameShadow">
+ <enum>QFrame::Raised</enum>
+ </property>
+ <layout class="QHBoxLayout" name="horizontalLayout">
+ <item>
+ <widget class="QPushButton" name="applyButton">
+ <property name="text">
+ <string>Apply</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="revertButton">
+ <property name="text">
+ <string>Revert</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="addButton">
+ <property name="toolTip">
+ <string>Click here to add a new property</string>
+ </property>
+ <property name="statusTip">
+ <string>Click here to add a new property</string>
+ </property>
+ <property name="whatsThis">
+ <string>Click here to add a new property</string>
+ </property>
+ <property name="text">
+ <string>Add</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ <resources/>
+ <connections/>
+ <slots>
+ <slot>showAtomGlyphToggled(bool)</slot>
+ </slots>
+</ui>
diff --git a/modeling/actions/pml/resources/PMLExploreIcons.qrc b/modeling/actions/pml/resources/PMLExploreIcons.qrc
new file mode 100644
index 0000000..ca56af1
--- /dev/null
+++ b/modeling/actions/pml/resources/PMLExploreIcons.qrc
@@ -0,0 +1,8 @@
+<RCC>
+ <qresource prefix="/">
+ <file alias="AtomIcon">atom_20x20.xpm</file>
+ <file alias="CellIcon">cell_20x20.xpm</file>
+ <file alias="StructuralComponentIcon">structuralcomponent_20x20.xpm</file>
+ <file alias="MultiComponentIcon">multicomponent_20x20.xpm</file>
+ </qresource>
+</RCC>
diff --git a/modeling/actions/pml/resources/atom_20x20.xpm b/modeling/actions/pml/resources/atom_20x20.xpm
new file mode 100644
index 0000000..f72941c
--- /dev/null
+++ b/modeling/actions/pml/resources/atom_20x20.xpm
@@ -0,0 +1,166 @@
+/* XPM */
+static const char *atom_20x20[]={
+"20 20 143 2",
+"Qt c None",
+"#7 c #054581",
+"#8 c #0c4b87",
+"#H c #3383c8",
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+".N c #ffe6cb",
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+".F c #ffe9e8",
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+"QtQtQtQtQtQtQtQtQtQtQtQtQtQtQtQtQtQtQtQt"};
diff --git a/modeling/actions/pml/resources/cell_20x20.xpm b/modeling/actions/pml/resources/cell_20x20.xpm
new file mode 100644
index 0000000..89821eb
--- /dev/null
+++ b/modeling/actions/pml/resources/cell_20x20.xpm
@@ -0,0 +1,262 @@
+/* XPM */
+static const char *cell_20x20[]={
+"20 20 239 2",
+"Qt c None",
+".w c #363064",
+".x c #373164",
+"ba c #393365",
+"#W c #393366",
+"bo c #3a3467",
+"#S c #3b3063",
+"#k c #3c3668",
+"bu c #3d3666",
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+".v c #433664",
+".5 c #4a4270",
+".y c #4b3863",
+".8 c #4d2141",
+"#w c #534970",
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+"#x c #7b7699",
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+".Q c #920601",
+"aX c #940500",
+"bb c #95818d",
+"bz c #97243c",
+".l c #9892ac",
+".V c #99342f",
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+".R c #994647",
+".I c #997885",
+".U c #9a0601",
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+"#E c #9d868c",
+"aW c #a0140f",
+".C c #a10803",
+"aG c #a23d39",
+"#j c #a29fb7",
+".P c #a50702",
+".T c #aa0702",
+"#X c #ac9da7",
+".k c #aca9bf",
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+".u c #d01a17",
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diff --git a/modeling/actions/pml/resources/multicomponent_20x20.xpm b/modeling/actions/pml/resources/multicomponent_20x20.xpm
new file mode 100644
index 0000000..37358d2
--- /dev/null
+++ b/modeling/actions/pml/resources/multicomponent_20x20.xpm
@@ -0,0 +1,183 @@
+/* XPM */
+static const char *multicomponent_20x20[]={
+"20 20 160 2",
+".o c #000000",
+".l c #010101",
+".g c #0c0c0c",
+".n c #0f0f0f",
+".m c #111111",
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+"#S c #7a7c78",
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+".N c #7c868d",
+"#h c #7d7c76",
+".O c #7d8b96",
+".f c #7f7f7f",
+".e c #838383",
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+"#. c #ab9472",
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diff --git a/modeling/actions/pml/resources/structuralcomponent_20x20.xpm b/modeling/actions/pml/resources/structuralcomponent_20x20.xpm
new file mode 100644
index 0000000..5f220c8
--- /dev/null
+++ b/modeling/actions/pml/resources/structuralcomponent_20x20.xpm
@@ -0,0 +1,316 @@
+/* XPM */
+static const char *structuralcomponent_20x20[]={
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diff --git a/modeling/actions/pml/resources/translate/translate_en.ts b/modeling/actions/pml/resources/translate/translate_en.ts
new file mode 100644
index 0000000..84b5712
--- /dev/null
+++ b/modeling/actions/pml/resources/translate/translate_en.ts
@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="en_US">
+<context>
+ <name>ui_AddNewPropertyWidget</name>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="14"/>
+ <source>Add New Property</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="35"/>
+ <source>Name</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="45"/>
+ <source>Value</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>ui_PmlExplorerWidget</name>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="20"/>
+ <source>PML Explore</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="73"/>
+ <location filename="../../PmlExplorerWidget.ui" line="76"/>
+ <source>If checked, display a glyph on the atoms composing the current selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="79"/>
+ <source>Show Atom Glyph</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="117"/>
+ <source>Apply</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="124"/>
+ <source>Revert</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="131"/>
+ <location filename="../../PmlExplorerWidget.ui" line="134"/>
+ <location filename="../../PmlExplorerWidget.ui" line="137"/>
+ <source>Click here to add a new property</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="140"/>
+ <source>Add</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/actions/pml/resources/translate/translate_fr.ts b/modeling/actions/pml/resources/translate/translate_fr.ts
new file mode 100644
index 0000000..8693e4b
--- /dev/null
+++ b/modeling/actions/pml/resources/translate/translate_fr.ts
@@ -0,0 +1,63 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="fr_FR">
+<context>
+ <name>ui_AddNewPropertyWidget</name>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="14"/>
+ <source>Add New Property</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="35"/>
+ <source>Name</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AddNewPropertyWidget.ui" line="45"/>
+ <source>Value</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>ui_PmlExplorerWidget</name>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="20"/>
+ <source>PML Explore</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="73"/>
+ <location filename="../../PmlExplorerWidget.ui" line="76"/>
+ <source>If checked, display a glyph on the atoms composing the current selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="79"/>
+ <source>Show Atom Glyph</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="117"/>
+ <source>Apply</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="124"/>
+ <source>Revert</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="131"/>
+ <location filename="../../PmlExplorerWidget.ui" line="134"/>
+ <location filename="../../PmlExplorerWidget.ui" line="137"/>
+ <source>Click here to add a new property</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../PmlExplorerWidget.ui" line="140"/>
+ <source>Add</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/actions/simulationtabs/SimulationTabs.cpp b/modeling/actions/simulationtabs/SimulationTabs.cpp
deleted file mode 100644
index f9c7499..0000000
--- a/modeling/actions/simulationtabs/SimulationTabs.cpp
+++ /dev/null
@@ -1,52 +0,0 @@
-
-
-#include "SimulationTabs.h"
-
-#include <QString>
-#include <QMessageBox>
-#include <QTextStream>
-#include <Application.h>
-#include <QFrame>
-#include <MonitoringDialog.h>
-#include <MonitoringGuiManager.h>
-#include <Log.h>
-
-
-using namespace camitk;
-
-
-// --------------- Constructor -------------------
-SimulationTabs::SimulationTabs(ActionExtension * extension) : Action(extension) {
- // Setting name, description and input component
- setName("SimulationTabs");
- setDescription("Display tabs for simulation");
- setComponent("MMLComponent");
-
- // Setting classification family and tags
- setFamily("Modeling");
-}
-QWidget* SimulationTabs::getWidget() {
-
- MMLComponent * input = dynamic_cast<MMLComponent *> (getTargets().last());
- QWidget * widget;
-
- if( input ) {
- widget = input->getMonitoringGuiManager()->getDialog();
- } else {
- CAMITK_ERROR("SimulationTabs", "getWidget", "NULL widget");
- widget = NULL;
- }
-
- return widget;
-}
-// --------------- destructor -------------------
-SimulationTabs::~SimulationTabs() {
-
-}
-// --------------- apply -------------------
-Action::ApplyStatus SimulationTabs::apply() {
-
- return SUCCESS;
-}
-
-
diff --git a/modeling/actions/simulationtabs/SimulationTabs.h b/modeling/actions/simulationtabs/SimulationTabs.h
deleted file mode 100644
index 0f97a78..0000000
--- a/modeling/actions/simulationtabs/SimulationTabs.h
+++ /dev/null
@@ -1,38 +0,0 @@
-
-
-#ifndef SIMULATIONTABS_H
-#define SIMULATIONTABS_H
-
-#include <Action.h>
-
-#include <MMLComponent.h>
-
-
-
-class SimulationTabs : public camitk::Action {
-
-public:
-
- /// Default Constructor
- SimulationTabs(camitk::ActionExtension *);
-
- /// Default Destructor
- virtual ~SimulationTabs();
-
-public slots:
- /** this method is automatically called when the action is triggered.
- * Call getTargets() method to get the list of components to use.
- * \note getTargets() is automatically filtered so that it only contains compatible components,
- * i.e., instances of SimulationTabs (or a subclass).
- */
- virtual ApplyStatus apply();
-
- virtual QWidget * getWidget();
-
-private:
-
-
-};
-
-#endif // SIMULATIONTABS_H
-
diff --git a/modeling/actions/simulationtabs/SimulationTabsExtension.cpp b/modeling/actions/simulationtabs/SimulationTabsExtension.cpp
deleted file mode 100644
index ee8148f..0000000
--- a/modeling/actions/simulationtabs/SimulationTabsExtension.cpp
+++ /dev/null
@@ -1,16 +0,0 @@
-
-
-#include "SimulationTabsExtension.h"
-
-// include generated actions headers
-#include "SimulationTabs.h"
-
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(simulationtabsextension, SimulationTabsExtension);
-
-// --------------- getActions -------------------
-void SimulationTabsExtension::init() {
- // Creating and registering the instance of SimulationTabs
- registerNewAction(SimulationTabs);
-}
-
diff --git a/modeling/actions/simulationtabs/SimulationTabsExtension.h b/modeling/actions/simulationtabs/SimulationTabsExtension.h
deleted file mode 100644
index db99769..0000000
--- a/modeling/actions/simulationtabs/SimulationTabsExtension.h
+++ /dev/null
@@ -1,36 +0,0 @@
-
-
-#ifndef SIMULATIONTABSEXTENSION_H
-#define SIMULATIONTABSEXTENSION_H
-
-#include <ActionExtension.h>
-
-class SimulationTabsExtension : public camitk::ActionExtension {
- Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
-
-public:
- /// Constructor
- SimulationTabsExtension() : ActionExtension() {};
-
- /// Destructor
- virtual ~SimulationTabsExtension() {};
-
- /// Method returning the action extension name
- virtual QString getName() {
- return "SimulationTabsExtension";
- };
-
- /// Method returning the action extension descrption
- virtual QString getDescription() {
- return "Display";
- };
-
- /// initialize all the actions
- virtual void init();
-
-};
-
-#endif // SIMULATIONTABSEXTENSION_H
-
-
diff --git a/modeling/applications/CMakeLists.txt b/modeling/applications/CMakeLists.txt
index f6e5568..0ce7b1e 100644
--- a/modeling/applications/CMakeLists.txt
+++ b/modeling/applications/CMakeLists.txt
@@ -9,7 +9,19 @@
# Find applications
get_subdirectories(APPLICATIONS_LIST)
+# -- Define for subdirectory usage (test and tools)
+# create some useful variables for subdirectories applications
+# This lines have to be below the camitk_application macro call
+set(LML_DEPENDENCY library${TARGET_NAME_SEPARATOR}lml)
+set(LMLSCHEMA_DEPENDENCY library${TARGET_NAME_SEPARATOR}lmlschema)
+set(LML_DEPENDENCIES ${LML_DEPENDENCY} ${LMLSCHEMA_DEPENDENCY})
+set(PML_DEPENDENCY library${TARGET_NAME_SEPARATOR}pml)
+set(PMLSCHEMA_DEPENDENCY library${TARGET_NAME_SEPARATOR}pmlschema)
+set(PML_DEPENDENCIES ${PML_DEPENDENCY} ${PMLSCHEMA_DEPENDENCY})
+set(PMLLML_DEPENDENCY ${PML_DEPENDENCY} ${PMLSCHEMA_DEPENDENCY} ${LML_DEPENDENCY} ${LMLSCHEMA_DEPENDENCY})
+
# --- add every given application
foreach(APPLICATION_NAME ${APPLICATIONS_LIST})
add_subdirectory(${APPLICATION_NAME})
endforeach()
+
diff --git a/modeling/applications/lmltest/CMakeLists.txt b/modeling/applications/lmltest/CMakeLists.txt
new file mode 100644
index 0000000..2748d66
--- /dev/null
+++ b/modeling/applications/lmltest/CMakeLists.txt
@@ -0,0 +1,36 @@
+set(LMLTEST_TARGET_NAME library${TARGET_NAME_SEPARATOR}lmltest)
+
+set(SRCS lmltest.cpp)
+include_directories(${CAMITK_INCLUDE_DIR}/libraries)
+link_directories(${CAMITK_LINK_DIRECTORIES})
+add_executable(${LMLTEST_TARGET_NAME} ${SRCS})
+target_link_libraries(${LMLTEST_TARGET_NAME} ${LML_DEPENDENCIES}) # both lml and lmlschema are needed
+add_dependencies(${LMLTEST_TARGET_NAME} ${LML_DEPENDENCY}) # as lml depends on lmlschema, only lml needed here
+
+# in debug mode, add postfix
+if (MSVC)
+ set_target_properties(${LMLTEST_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
+endif()
+
+#----------
+# Testing
+#----------
+set(LMLTEST_BASENAME "lml-${LMLTEST_TARGET_NAME}")
+# TODO compare output csv with a static output csv (that it should produce)
+camitk_init_test(${LMLTEST_TARGET_NAME})
+# should pass because lmltest run with no arguments shows usage and exit success
+camitk_add_test(PROJECT_NAME ${LMLTEST_BASENAME} TEST_SUFFIX "-")
+
+# should pass because invoking lmltest with a faulty arguments results in printing
+# an "Argument error" message (and exit failure)
+camitk_add_test(EXECUTABLE_ARGS "-error"
+ PASS_REGULAR_EXPRESSION "Argument errors: "
+ PROJECT_NAME ${LMLTEST_BASENAME} TEST_SUFFIX "-")
+
+# should pass because reading test.lml should not modify it (input == output)
+if(NOT WIN32) #this test fails on windows7 VM due to missing tweek for -debug
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/test.lml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/test.lml
+ PROJECT_NAME ${LMLTEST_BASENAME} TEST_SUFFIX "-")
+endif()
+
diff --git a/modeling/libraries/lml/test/cube.lml b/modeling/applications/lmltest/cube.lml
similarity index 100%
rename from modeling/libraries/lml/test/cube.lml
rename to modeling/applications/lmltest/cube.lml
diff --git a/modeling/libraries/lml/test/direction-toward.lml b/modeling/applications/lmltest/direction-toward.lml
similarity index 100%
rename from modeling/libraries/lml/test/direction-toward.lml
rename to modeling/applications/lmltest/direction-toward.lml
diff --git a/modeling/applications/lmltest/lmltest.cpp b/modeling/applications/lmltest/lmltest.cpp
new file mode 100644
index 0000000..1d12d32
--- /dev/null
+++ b/modeling/applications/lmltest/lmltest.cpp
@@ -0,0 +1,275 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// include the needed files
+#include <lml/Loads.h>
+#include <lml/Translation.h>
+#include <lml/Force.h>
+#include <string>
+#include <string.h>
+#include <ostream>
+#include <fstream>
+
+void testActivation(std::string imlFile, double dt, std::string outcsv = "") {
+ // read the loads
+ Loads list(imlFile.c_str());
+
+ // search for the first event
+ double tmin = list.getFirstEventDate();
+
+ // search for the last event
+ double tmax = list.getLastEventDate();
+
+ std::cout << "Checking load activation, with time = [" << tmin << ".." << tmax << "], dt="
+ << dt << std::endl;
+
+ // open the output file if needed
+ std::ofstream outStream;
+
+ if (outcsv != "") {
+ outStream.open(outcsv.c_str());
+ }
+
+ double t;
+
+ if (outcsv != "") {
+ outStream << "t ";
+
+ for (unsigned int i=0; i<list.numberOfLoads(); i++) {
+ outStream << list.getLoad(i)->getType() << " ";
+ }
+
+ outStream << std::endl;
+ }
+
+ // loop from tmin to tmax and display each list of loads at each time t
+ for (t=tmin-dt; t<=tmax+dt; t+=dt) {
+ std::cout << "---------------------------" << std::endl;
+ std::cout << "time t=" << t << std::endl;
+
+ if (outcsv != "") {
+ outStream << t << " ";
+ }
+
+ // check all the loads
+ for (unsigned int i=0; i<list.numberOfLoads(); i++) {
+ Load * l = list.getLoad(i);
+
+ // print the value
+ if (l->isActive(t)) {
+ std::cout << "\t- active ";
+ std::cout << l->getType() << ": ";
+
+ if (l->getDirection().isToward()) {
+ std::cout << "dir toward Atom#" << l->getDirection().getToward() << ", ";
+ } else {
+ std::cout << "dir=(";
+
+ // x
+ if (l->getDirection().isXSpecified())
+ std::cout << l->getDirection().getX();
+ else if (l->getDirection().isXNull())
+ std::cout << "NULL";
+ else
+ std::cout << "free";
+
+ std::cout << ",";
+
+ // y
+ if (l->getDirection().isYSpecified())
+ std::cout << l->getDirection().getY();
+ else if (l->getDirection().isYNull())
+ std::cout << "NULL";
+ else
+ std::cout << "free";
+
+ std::cout << ",";
+
+ // z
+ if (l->getDirection().isZSpecified())
+ std::cout << l->getDirection().getZ();
+ else if (l->getDirection().isZNull())
+ std::cout << "NULL";
+ else
+ std::cout << "free";
+
+ std::cout << "), ";
+ }
+
+ std::cout << "val=" << l->getValue(t);
+ std::cout << std::endl;
+
+ if (outcsv != "") {
+ outStream << l->getValue(t) << " ";
+ }
+ } else {
+ if (outcsv != "") {
+ outStream << 0.0 << " ";
+ }
+ }
+ }
+
+ if (outcsv != "") {
+ outStream << std::endl;
+ }
+ }
+
+ if (outcsv != "") {
+ outStream.close();
+ }
+}
+
+
+int main(int argc, char *argv[]) {
+ // test param
+ std::string ifile;
+ bool inputTest;
+ std::string ofile;
+ bool outputTest;
+ double dt;
+ bool activationTest;
+ std::string afile;
+ bool ansysOutput;
+ std::string csvfile = "";
+
+ // test the arguments
+ inputTest = outputTest = activationTest = ansysOutput = false;
+
+ for (int i=1; i<argc; i++) {
+ if (!strcmp(argv[i],"-i")) {
+ ifile = argv[i+1];
+ inputTest = true;
+ }
+
+ if (!strcmp(argv[i],"-o")) {
+ ofile = argv[i+1];
+ outputTest = true;
+ }
+
+ if (!strcmp(argv[i],"-dt")) {
+ dt = atof(argv[i+1]);
+ activationTest = true;
+ }
+
+ if (!strcmp(argv[i],"-a")) {
+ afile = argv[i+1];
+ ansysOutput = true;
+ }
+
+ if (!strcmp(argv[i],"-plot")) {
+ csvfile = argv[i+1];
+ }
+ }
+
+ if ((!activationTest && !inputTest && !outputTest) ||
+ (!inputTest && ansysOutput) // can't do an ansys output if there are no input file
+ ) {
+ if (argc>1) {
+ std::cout << "Argument errors: ";
+ for(int i=1; i<argc; i++) {
+ std::cout << "[" << argv[i] << "] ";
+ }
+ }
+ std::cout << std::endl;
+ std::cout << "usage: lmltest [-i file.xml] [-o out.xml] [-dt dt] [-a ansys.mac] [-plot out.csv]" << std::endl;
+ std::cout << "\t-i in.xml\treading test: read the file, create object and then print them on stdout" << std::endl;
+ std::cout << "\t-o out.xml\twriting test: a file 'out.xml' will be created with synthesis data and then re-read for testing" << std::endl;
+ std::cout << "\t-dt dt\tactivation test: the delta t used to check load activations (if not given, no activation test)" << std::endl;
+ std::cout << "\t-plot out.csv\toptional for the activation test: output a simple csv file that can be use to plot the loads values along time (column1=time)" << std::endl;
+ std::cout << "\t-a ansys.mac\tprint out the input file in ansys format" << std::endl;
+ std::cout << std::endl;
+ std::cout << "LML " << Loads::VERSION << std::endl;
+ if (argc>1)
+ return EXIT_FAILURE;
+ else
+ return EXIT_SUCCESS;
+ }
+
+ if (inputTest) {
+ Loads allLoads(ifile);
+ allLoads.xmlPrint(std::cout);
+
+ if (ansysOutput) {
+ std::cout << "ANSYS translation to: " << afile << std::endl;
+ std::ofstream outputFile;
+ outputFile.open(afile.c_str());
+ allLoads.ansysPrint(outputFile);
+ outputFile.close();
+ }
+ }
+
+ if (outputTest) {
+ // 1. create a new synthetic load list
+ Loads l;
+
+ // 2. add a translation
+ Translation * t = new Translation();
+
+ t->addTarget("1-20");
+ t->setDirection(0.21, 12.0, 5.39);
+ t->addEvent(new ValueEvent(10.0, 0.5));
+ t->addEvent(new ValueEvent(100.0, 1.5));
+ t->setUnit(TranslationUnit::MM());
+
+ // insert the translation t in l
+ l.addLoad(t);
+
+ // 3 . add a force
+ Force * f = new Force();
+
+ f->addTarget("1-5,7,10-12");
+ f->setDirection(0.21, 12.0, 5.39);
+ f->addEvent(new ValueEvent(0.0, 1.0));
+ f->addEvent(new ValueEvent(15.0, 2.0));
+ f->addEvent(new ValueEvent(0.0, 3.0));
+ f->setUnit(ForceUnit::KN());
+
+ // insert the translation t in l
+ l.addLoad(f);
+
+ // 4. print to file
+ std::cout << "Writing test loads to:" << argv[1] << std::endl;
+ std::ofstream outputFile;
+ outputFile.open(ofile.c_str());
+ l.xmlPrint(outputFile);
+ outputFile.close();
+
+ // 5. Try to read it again and print to stdout
+ std::cout << "Printing of loads from: " << ifile << std::endl;
+ Loads l2(ofile);
+ l2.xmlPrint(std::cout);
+ }
+
+ // test the load activations, using time step=0.1
+ if (activationTest) {
+ if (inputTest)
+ testActivation(ifile, dt, csvfile);
+
+ if (outputTest)
+ testActivation(ofile, dt, csvfile);
+ }
+
+ return EXIT_SUCCESS;
+}
diff --git a/modeling/libraries/lml/test/load-sample1.lml b/modeling/applications/lmltest/load-sample1.lml
similarity index 100%
rename from modeling/libraries/lml/test/load-sample1.lml
rename to modeling/applications/lmltest/load-sample1.lml
diff --git a/modeling/libraries/lml/test/load-sample2.lml b/modeling/applications/lmltest/load-sample2.lml
similarity index 100%
rename from modeling/libraries/lml/test/load-sample2.lml
rename to modeling/applications/lmltest/load-sample2.lml
diff --git a/modeling/libraries/lml/test/named-target.lml b/modeling/applications/lmltest/named-target.lml
similarity index 100%
rename from modeling/libraries/lml/test/named-target.lml
rename to modeling/applications/lmltest/named-target.lml
diff --git a/modeling/libraries/lml/test/null-direction.lml b/modeling/applications/lmltest/null-direction.lml
similarity index 100%
rename from modeling/libraries/lml/test/null-direction.lml
rename to modeling/applications/lmltest/null-direction.lml
diff --git a/modeling/libraries/lml/test/test.lml b/modeling/applications/lmltest/test.lml
similarity index 100%
rename from modeling/libraries/lml/test/test.lml
rename to modeling/applications/lmltest/test.lml
diff --git a/modeling/applications/mml/CMakeLists.txt b/modeling/applications/mml/CMakeLists.txt
new file mode 100644
index 0000000..58f80c7
--- /dev/null
+++ b/modeling/applications/mml/CMakeLists.txt
@@ -0,0 +1,77 @@
+# MML applications
+
+# The mml applications are not defined as camitk applications
+# (they do not use the camitk_application macro)
+# because they are not publicly published yet...
+# => includes, libraries and link path have to be defined manually
+# and used in the subdirectories CMakeLists.txt
+# respectively with:
+# include_directories(${MML_INCLUDE_DIRECTORIES})
+# set(applicationname_LIBRARIES ${MML_LIBRARIES} ...)
+# link_directories(${MML_LINK_DIRECTORIES})
+
+# To publish them as camitk application, the following would be needed:
+# - a global naming (such as camitk-mml-appname)
+# - a man page
+# - for GUI app: an icon, a .desktop file etc...
+
+set(MML_INCLUDE_DIRECTORIES
+ ${CAMITK_INCLUDE_DIRECTORIES}
+ ${CAMITK_INCLUDE_DIR}/libraries
+ ${MMLSCHEMA_INCLUDE_DIR}
+ ${CAMITK_INCLUDE_DIR}/libraries/mmlschema
+ ${CAMITK_INCLUDE_DIR}/libraries/monitoring
+ ${CAMITK_INCLUDE_DIR}/libraries/pml
+ ${CAMITK_INCLUDE_DIR}/libraries/lml
+ ${LIBXML2_INCLUDE_DIR}
+ ${XERCESC_INCLUDE_DIR}
+ ${XSD_INCLUDE_DIR}
+ ${SOFA_INCLUDE_DIR}
+)
+set(MML_LIBRARIES
+ ${LIBXML2_LIBRARIES}
+ ${XERCESC_LIBRARIES}
+ monitoring
+)
+set(MML_LINK_DIRECTORIES
+ ${CAMITK_LINK_DIRECTORIES}
+ ${SOFA_LIB_DIR}
+)
+
+set(MMLSCHEMA_INCLUDE_DIR ${CAMITK_INCLUDE_DIR}/libraries/mmlschema)
+
+# define names of the mml libraries globally
+set(MMLSCHEMA_DEPENDENCY library${TARGET_NAME_SEPARATOR}mmlschema)
+set(MONITORING_DEPENDENCY library${TARGET_NAME_SEPARATOR}monitoring)
+set(MONITORING_GUI_DEPENDENCY library${TARGET_NAME_SEPARATOR}monitoringgui)
+set(MML_DEPENDENCY ${MONITORING_DEPENDENCY} ${MMLSCHEMA_DEPENDENCY} ${PMLLML_DEPENDENCY})
+
+option(MML_GENERATE_BENCHMARK "Generates benchmark binary" OFF)
+if(MML_GENERATE_BENCHMARK)
+ add_subdirectory(benchmark)
+endif()
+
+if(MML_GENERATE_GUI)
+ option(MML_GENERATE_BENCHMARKGUI "Generates benchmarkgui binary" OFF)
+ if(MML_GENERATE_BENCHMARKGUI)
+ add_subdirectory(benchmarkgui)
+ endif()
+endif()
+
+if(SOFA_SUPPORT)
+ option(MML_GENERATE_SCN2PML "Generates scn2pml binary" OFF)
+ if(MML_GENERATE_SCN2PML)
+ add_subdirectory(scn2pml)
+ endif()
+endif()
+
+option(MML_GENERATE_PML2MMLOUT "Generates pml2mmlOut binary" OFF)
+if(MML_GENERATE_PML2MMLOUT)
+ add_subdirectory(pml2mmlOut)
+endif()
+
+option(MML_GENERATE_PARAMEXPLORER "Generates paramExplorer binary" OFF)
+if(MML_GENERATE_PARAMEXPLORER)
+ add_subdirectory(paramExplorer)
+endif()
+
diff --git a/modeling/applications/mml/benchmark/CMakeLists.txt b/modeling/applications/mml/benchmark/CMakeLists.txt
new file mode 100644
index 0000000..198afff
--- /dev/null
+++ b/modeling/applications/mml/benchmark/CMakeLists.txt
@@ -0,0 +1,31 @@
+project(benchmark)
+
+if(MML_GENERATE_GUI)
+ set(QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+ find_package(Qt5 COMPONENTS ${QT_COMPONENTS} REQUIRED)
+ if (Qt5_FOUND)
+ # cmake_policy(SET CMP0020 NEW) # policy for Qt core linking to qtmain.lib
+ message(STATUS "Modeling application benchmark: found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+ include_directories(${QT_INCLUDE_DIRS})
+ else()
+ message(SEND_ERROR "Modeling application benchmark: Failed to find Qt 5.x. This is needed by ${LIBRARY_TARGET_NAME}.")
+ endif()
+ add_definitions(-DMML_GENERATE_GUI)
+endif()
+
+set(HEADERS
+)
+
+set(SRCS
+ benchmark.cpp
+ ${HEADERS}
+)
+
+include_directories(${MML_INCLUDE_DIRECTORIES})
+link_directories(${MML_LINK_DIRECTORIES})
+add_executable(benchmark ${SRCS})
+qt5_use_modules(benchmark ${QT_COMPONENTS})
+target_link_libraries(benchmark ${MML_DEPENDENCY})
+add_dependencies(benchmark ${MONITORING_DEPENDENCY})
+
diff --git a/modeling/applications/mml/benchmark/benchmark.cpp b/modeling/applications/mml/benchmark/benchmark.cpp
new file mode 100644
index 0000000..9b5edd7
--- /dev/null
+++ b/modeling/applications/mml/benchmark/benchmark.cpp
@@ -0,0 +1,58 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <memory> // std::auto_ptr
+#include <iostream>
+
+#include <MonitoringManager.h>
+#include <MonitoringManagerFactory.h>
+
+#ifdef MML_GENERATE_GUI
+#include <QApplication>
+#endif
+
+using namespace std;
+
+int
+main (int argc, char* argv[]) {
+ if (argc != 2) {
+ cerr << "usage: " << argv[0] << " file.mml" << endl;
+ return 1;
+ }
+
+ try {
+#ifdef MML_GENERATE_GUI
+ QApplication app(argc, argv);
+#endif
+ MonitoringManager* c = MonitoringManagerFactory::createManager(argv[1]);
+
+ c->simulate();
+ delete c;
+ } catch (const xml_schema::exception& e) {
+ cerr << e << endl;
+ return 1;
+ }
+}
+
diff --git a/modeling/applications/mml/benchmarkgui/CMakeLists.txt b/modeling/applications/mml/benchmarkgui/CMakeLists.txt
new file mode 100644
index 0000000..afd90ff
--- /dev/null
+++ b/modeling/applications/mml/benchmarkgui/CMakeLists.txt
@@ -0,0 +1,35 @@
+project(benchmarkgui)
+
+if(MML_GENERATE_GUI)
+ set(QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+ find_package(Qt5 COMPONENTS ${QT_COMPONENTS} REQUIRED)
+ if (Qt5_FOUND)
+ # cmake_policy(SET CMP0020 NEW) # policy for Qt core linking to qtmain.lib
+ message(STATUS "Modeling application benchmarkgui: found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+ include_directories(${QT_INCLUDE_DIRS})
+ else()
+ message(SEND_ERROR "Modeling application benchmarkgui: Failed to find Qt 5.x. This is needed by ${LIBRARY_TARGET_NAME}.")
+ endif()
+ add_definitions(-DMML_GENERATE_GUI)
+endif()
+
+set(benchmarkgui_LIBRARIES
+ ${MML_DEPENDENCY}
+ ${MONITORING_GUI_DEPENDENCY}
+)
+
+set(HEADERS
+)
+
+set(SRCS
+ benchmarkgui.cpp
+ ${HEADERS}
+)
+
+include_directories(${MML_INCLUDE_DIRECTORIES})
+link_directories(${MML_LINK_DIRECTORIES})
+add_executable(benchmarkgui ${SRCS})
+qt5_use_modules(benchmarkgui ${QT_COMPONENTS})
+target_link_libraries(benchmarkgui ${benchmarkgui_LIBRARIES})
+add_dependencies(benchmarkgui ${MONITORING_DEPENDENCY})
diff --git a/modeling/applications/mml/benchmarkgui/benchmarkgui.cpp b/modeling/applications/mml/benchmarkgui/benchmarkgui.cpp
new file mode 100644
index 0000000..eadbb0b
--- /dev/null
+++ b/modeling/applications/mml/benchmarkgui/benchmarkgui.cpp
@@ -0,0 +1,37 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <QApplication>
+#include <monitoringgui/MonitoringGuiManager.h>
+
+using namespace std;
+
+int main (int argc, char* argv[]) {
+ // just instanciate MonitoringGuiManager
+ QApplication app(argc, argv);
+ MonitoringGuiManager* manager = new MonitoringGuiManager();
+ return app.exec();
+ delete manager;
+}
\ No newline at end of file
diff --git a/modeling/applications/mml/benchmarkgui/resources/translate/translate_en.ts b/modeling/applications/mml/benchmarkgui/resources/translate/translate_en.ts
new file mode 100644
index 0000000..03c6581
--- /dev/null
+++ b/modeling/applications/mml/benchmarkgui/resources/translate/translate_en.ts
@@ -0,0 +1,284 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="en_US">
+<context>
+ <name>MonitoringDialog</name>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="26"/>
+ <location filename="../../MonitoringDialog.ui" line="57"/>
+ <source>Simulation</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="65"/>
+ <source>dt:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="72"/>
+ <source>refresh dt:</source>
+ <translation>dt rafraichi:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="82"/>
+ <source>time:</source>
+ <translation>temps:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="89"/>
+ <source>current fps:</source>
+ <translation>fps courante:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="106"/>
+ <source>average fps:</source>
+ <translation>fps moyenne:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="218"/>
+ <source>pml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="232"/>
+ <location filename="../../MonitoringDialog.ui" line="253"/>
+ <location filename="../../MonitoringDialog.ui" line="543"/>
+ <source>Browse</source>
+ <translation>Naviguer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="239"/>
+ <source>lml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="276"/>
+ <source>Monitors</source>
+ <translation>Moniteurs</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="307"/>
+ <location filename="../../MonitoringDialog.ui" line="426"/>
+ <source>Type</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="312"/>
+ <source>Target</source>
+ <translation>Cible</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="317"/>
+ <source>Start At</source>
+ <translation>Démarrer à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="322"/>
+ <source>Stop At</source>
+ <translation>Stopper à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="327"/>
+ <source>Reference</source>
+ <translation>Référence</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="337"/>
+ <location filename="../../MonitoringDialog.ui" line="446"/>
+ <source>Add</source>
+ <translation>Ajouter</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="357"/>
+ <location filename="../../MonitoringDialog.ui" line="466"/>
+ <source>Edit</source>
+ <translation>Editer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="364"/>
+ <location filename="../../MonitoringDialog.ui" line="473"/>
+ <source>Remove</source>
+ <translation>Retirer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="413"/>
+ <source>Stopping Criteria</source>
+ <translation>Critère d'arrêt</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="431"/>
+ <source>Condition</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="436"/>
+ <source>Scope</source>
+ <translation>Etendue</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="529"/>
+ <source>mml in:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="552"/>
+ <source>Save mml in</source>
+ <translation>Sauver mml in</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="561"/>
+ <source>Save mml out</source>
+ <translation>Sauver mml out</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="568"/>
+ <source>Save output as .csv</source>
+ <translation>Sauver sortie comme .csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="586"/>
+ <location filename="../../MonitoringDialog.ui" line="589"/>
+ <source>rewind simulation</source>
+ <translation>rembobiner simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="599"/>
+ <source>Ctrl+R</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="637"/>
+ <location filename="../../MonitoringDialog.ui" line="640"/>
+ <source>play simulation</source>
+ <translation>jouer simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="650"/>
+ <source>P</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="675"/>
+ <location filename="../../MonitoringDialog.ui" line="678"/>
+ <source>play one step</source>
+ <translation>jouer une étape</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="688"/>
+ <source>S</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="710"/>
+ <location filename="../../MonitoringDialog.ui" line="713"/>
+ <source>pause simulation</source>
+ <translation>simulation en pause</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="125"/>
+ <source>Open MMLIn</source>
+ <translation>Ouvrir MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="125"/>
+ <location filename="../../MonitoringDialog.cpp" line="134"/>
+ <location filename="../../MonitoringDialog.cpp" line="150"/>
+ <source>MML files (*.mml)</source>
+ <translation>Fichiers MML (*.mml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="134"/>
+ <source>Save MMLOut</source>
+ <translation>Sauver MMLOut</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="142"/>
+ <source>Save as Csv</source>
+ <translation>Sauver comme Csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="142"/>
+ <source>CSV files (*.csv)</source>
+ <translation>Fichiers CSV (*.csv)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="150"/>
+ <source>Save MMLIn</source>
+ <translation>Sauver MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="159"/>
+ <source>Changing Lml</source>
+ <translation>Changement Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="159"/>
+ <source>Changing lml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de lml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="161"/>
+ <source>Open Lml</source>
+ <translation>Ouvrir Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="161"/>
+ <source>LML files (*.lml)</source>
+ <translation>Fichiers LML (*.lml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="172"/>
+ <source>Changing Pml</source>
+ <translation>Changement Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="172"/>
+ <source>Changing pml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de pml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="174"/>
+ <source>Open Pml</source>
+ <translation>Ouvrir Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="174"/>
+ <source>PML files (*.pml)</source>
+ <translation>Fichiers PML (*.pml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="195"/>
+ <source>Rewind Simulation</source>
+ <translation>Rembobiner la simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="195"/>
+ <source>Rewind simulation?
+ Not saved data will be lost.</source>
+ <translation>Rembobiner la simulation ?
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="309"/>
+ <source>Simulator</source>
+ <translation>Simulateur</translation>
+ </message>
+</context>
+<context>
+ <name>MonitoringGuiManager</name>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>Simulation finished</source>
+ <translation>Simulation Terminée</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>The simulation is finished (Stopping Criterion reached).</source>
+ <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/applications/mml/benchmarkgui/resources/translate/translate_fr.ts b/modeling/applications/mml/benchmarkgui/resources/translate/translate_fr.ts
new file mode 100644
index 0000000..03c6581
--- /dev/null
+++ b/modeling/applications/mml/benchmarkgui/resources/translate/translate_fr.ts
@@ -0,0 +1,284 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="en_US">
+<context>
+ <name>MonitoringDialog</name>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="26"/>
+ <location filename="../../MonitoringDialog.ui" line="57"/>
+ <source>Simulation</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="65"/>
+ <source>dt:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="72"/>
+ <source>refresh dt:</source>
+ <translation>dt rafraichi:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="82"/>
+ <source>time:</source>
+ <translation>temps:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="89"/>
+ <source>current fps:</source>
+ <translation>fps courante:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="106"/>
+ <source>average fps:</source>
+ <translation>fps moyenne:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="218"/>
+ <source>pml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="232"/>
+ <location filename="../../MonitoringDialog.ui" line="253"/>
+ <location filename="../../MonitoringDialog.ui" line="543"/>
+ <source>Browse</source>
+ <translation>Naviguer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="239"/>
+ <source>lml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="276"/>
+ <source>Monitors</source>
+ <translation>Moniteurs</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="307"/>
+ <location filename="../../MonitoringDialog.ui" line="426"/>
+ <source>Type</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="312"/>
+ <source>Target</source>
+ <translation>Cible</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="317"/>
+ <source>Start At</source>
+ <translation>Démarrer à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="322"/>
+ <source>Stop At</source>
+ <translation>Stopper à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="327"/>
+ <source>Reference</source>
+ <translation>Référence</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="337"/>
+ <location filename="../../MonitoringDialog.ui" line="446"/>
+ <source>Add</source>
+ <translation>Ajouter</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="357"/>
+ <location filename="../../MonitoringDialog.ui" line="466"/>
+ <source>Edit</source>
+ <translation>Editer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="364"/>
+ <location filename="../../MonitoringDialog.ui" line="473"/>
+ <source>Remove</source>
+ <translation>Retirer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="413"/>
+ <source>Stopping Criteria</source>
+ <translation>Critère d'arrêt</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="431"/>
+ <source>Condition</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="436"/>
+ <source>Scope</source>
+ <translation>Etendue</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="529"/>
+ <source>mml in:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="552"/>
+ <source>Save mml in</source>
+ <translation>Sauver mml in</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="561"/>
+ <source>Save mml out</source>
+ <translation>Sauver mml out</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="568"/>
+ <source>Save output as .csv</source>
+ <translation>Sauver sortie comme .csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="586"/>
+ <location filename="../../MonitoringDialog.ui" line="589"/>
+ <source>rewind simulation</source>
+ <translation>rembobiner simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="599"/>
+ <source>Ctrl+R</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="637"/>
+ <location filename="../../MonitoringDialog.ui" line="640"/>
+ <source>play simulation</source>
+ <translation>jouer simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="650"/>
+ <source>P</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="675"/>
+ <location filename="../../MonitoringDialog.ui" line="678"/>
+ <source>play one step</source>
+ <translation>jouer une étape</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="688"/>
+ <source>S</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="710"/>
+ <location filename="../../MonitoringDialog.ui" line="713"/>
+ <source>pause simulation</source>
+ <translation>simulation en pause</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="125"/>
+ <source>Open MMLIn</source>
+ <translation>Ouvrir MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="125"/>
+ <location filename="../../MonitoringDialog.cpp" line="134"/>
+ <location filename="../../MonitoringDialog.cpp" line="150"/>
+ <source>MML files (*.mml)</source>
+ <translation>Fichiers MML (*.mml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="134"/>
+ <source>Save MMLOut</source>
+ <translation>Sauver MMLOut</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="142"/>
+ <source>Save as Csv</source>
+ <translation>Sauver comme Csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="142"/>
+ <source>CSV files (*.csv)</source>
+ <translation>Fichiers CSV (*.csv)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="150"/>
+ <source>Save MMLIn</source>
+ <translation>Sauver MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="159"/>
+ <source>Changing Lml</source>
+ <translation>Changement Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="159"/>
+ <source>Changing lml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de lml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="161"/>
+ <source>Open Lml</source>
+ <translation>Ouvrir Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="161"/>
+ <source>LML files (*.lml)</source>
+ <translation>Fichiers LML (*.lml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="172"/>
+ <source>Changing Pml</source>
+ <translation>Changement Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="172"/>
+ <source>Changing pml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de pml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="174"/>
+ <source>Open Pml</source>
+ <translation>Ouvrir Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="174"/>
+ <source>PML files (*.pml)</source>
+ <translation>Fichiers PML (*.pml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="195"/>
+ <source>Rewind Simulation</source>
+ <translation>Rembobiner la simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="195"/>
+ <source>Rewind simulation?
+ Not saved data will be lost.</source>
+ <translation>Rembobiner la simulation ?
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="309"/>
+ <source>Simulator</source>
+ <translation>Simulateur</translation>
+ </message>
+</context>
+<context>
+ <name>MonitoringGuiManager</name>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>Simulation finished</source>
+ <translation>Simulation Terminée</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>The simulation is finished (Stopping Criterion reached).</source>
+ <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/applications/mml/paramExplorer/CMakeLists.txt b/modeling/applications/mml/paramExplorer/CMakeLists.txt
new file mode 100644
index 0000000..fbce5ab
--- /dev/null
+++ b/modeling/applications/mml/paramExplorer/CMakeLists.txt
@@ -0,0 +1,34 @@
+project(paramExplorer)
+
+if(MML_GENERATE_GUI)
+ set(QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+ find_package(Qt5 COMPONENTS ${QT_COMPONENTS} REQUIRED)
+ if (Qt5_FOUND)
+ # cmake_policy(SET CMP0020 NEW) # policy for Qt core linking to qtmain.lib
+ message(STATUS "Modeling application paramExplorer: found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+ include_directories(${QT_INCLUDE_DIRS})
+ else()
+ message(SEND_ERROR "Modeling application paramExplorer: Failed to find Qt 5.x. This is needed by ${LIBRARY_TARGET_NAME}.")
+ endif()
+ add_definitions(-DMML_GENERATE_GUI)
+endif()
+
+set(paramExplorer_LIBRARIES
+ ${MML_DEPENDENCY}
+)
+
+set(HEADERS
+)
+
+set(SRCS
+ paramExplorer.cpp
+ ${HEADERS}
+)
+
+include_directories(${MML_INCLUDE_DIRECTORIES})
+link_directories(${MML_LINK_DIRECTORIES})
+add_executable(paramExplorer ${SRCS})
+qt5_use_modules(paramExplorer ${QT_COMPONENTS})
+target_link_libraries(paramExplorer ${paramExplorer_LIBRARIES})
+add_dependencies(paramExplorer ${MONITORING_DEPENDENCY})
diff --git a/modeling/applications/mml/paramExplorer/paramExplorer.cpp b/modeling/applications/mml/paramExplorer/paramExplorer.cpp
new file mode 100644
index 0000000..6c72ce9
--- /dev/null
+++ b/modeling/applications/mml/paramExplorer/paramExplorer.cpp
@@ -0,0 +1,135 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <memory> // std::auto_ptr
+#include <iostream>
+#include <fstream>
+#include <map>
+
+#include <MonitoringManager.h>
+#include <MonitoringManagerFactory.h>
+
+// pml component is needed
+#include <pml/MultiComponent.h>
+
+#ifdef MML_GENERATE_GUI
+#include <QApplication>
+#endif
+#include <map>
+
+using namespace std;
+
+int
+main (int argc, char* argv[]) {
+ if (argc != 2) {
+ cout << "usage: " << argv[0] << " file.txt" << endl;
+ cout << "file.txt should a text file with:" << endl;
+ cout << "file.mml" << endl;
+ cout << "out" << endl;
+ cout << "parameterToExplore valMin valMax step" << endl;
+ cout << "parameter1 val1" << endl;
+ cout << "parameter2 val2" << endl;
+ cout << "parameter3 val3" << endl;
+ cout << "etc..." << endl;
+
+ exit(0);
+ }
+
+ try {
+#ifdef MML_GENERATE_GUI
+ QApplication app(argc, argv);
+#endif
+
+ std::string mmlFile;
+ std::string parameterToExplore;
+ std::string out;
+ double valMin,valMax,step,current;
+ std::map<std::string,std::string> parameters;
+ ifstream file;
+ ofstream outFile;
+ std::string s1,s2;
+ cout << "reading "<< argv[1] << endl;
+ file.open(argv[1], ios::in);
+ if (file.bad()) {
+ cout << "reading "<< argv[1] << " failed" << endl;
+ exit(1);
+ }
+ file >> mmlFile;
+ cout << "mml file read" << endl;
+ file >> out;
+ cout << "output file read" << endl;
+ file >> parameterToExplore;
+ file >> valMin;
+ current=valMin;
+ file >> valMax;
+ file >> step;
+ cout << "Parameter to explore read" << endl;
+ file >> s1;
+ while (!file.eof()) {
+ file >> s2;
+ parameters.insert(std::pair<std::string,std::string>(s1,s2));
+ file >> s1;
+ }
+ cout << "Parameters read" << endl;
+
+ outFile.open(out.c_str(),ios::out);
+
+ while(current<valMax) {
+ cout << "Computation for " << parameterToExplore << " = " << current << endl;
+ MonitoringManager* m=MonitoringManagerFactory::createManager(mmlFile.c_str());
+ Properties* prop=m->getPml()->getExclusiveComponents()->getProperties();
+ std::map<std::string, std::string>::iterator iter;
+ for(iter=parameters.begin(); iter!=parameters.end(); iter++) {
+ prop->set(iter->first,iter->second);
+ }
+ prop->set(parameterToExplore,current);
+
+ if (m->init()) {
+ m->doMove();
+ while(!m->checkStop()) {
+ m->doMove();
+ }
+ }
+ cout << "Computation finished, exporting results to output file" << endl;
+
+ outFile << parameterToExplore << ": " << current << std::endl;
+ for (int i=0; i<m->numberOfMonitor(); i++) {
+ outFile << "Monitor " << i << ": ";
+ for(int j=0; j<m->getMonitor(i)->getNumberOfValues(); j++) {
+ outFile<< m->getMonitor(i)->getValue(j) << " ";
+ }
+ outFile << endl;
+ }
+ m->end();
+ current+=step;
+ delete m;
+ }
+
+ } catch (const xml_schema::exception& e) {
+ cerr << e << endl;
+ return 1;
+ }
+}
+
diff --git a/modeling/applications/mml/pml2mmlOut/CMakeLists.txt b/modeling/applications/mml/pml2mmlOut/CMakeLists.txt
new file mode 100644
index 0000000..f613e49
--- /dev/null
+++ b/modeling/applications/mml/pml2mmlOut/CMakeLists.txt
@@ -0,0 +1,34 @@
+project(pml2mmlOut)
+
+if(MML_GENERATE_GUI)
+ set(QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+ find_package(Qt5 COMPONENTS ${QT_COMPONENTS} REQUIRED)
+ if (Qt5_FOUND)
+ # cmake_policy(SET CMP0020 NEW) # policy for Qt core linking to qtmain.lib
+ message(STATUS "Modeling application pml2mmlOut: found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+ include_directories(${QT_INCLUDE_DIRS})
+ else()
+ message(SEND_ERROR "Modeling application pml2mmlOut: Failed to find Qt 5.x. This is needed by ${LIBRARY_TARGET_NAME}.")
+ endif()
+ add_definitions(-DMML_GENERATE_GUI)
+endif()
+
+set(pml2mmlOut_LIBRARIES
+ ${MML_DEPENDENCY}
+)
+
+set(HEADERS
+)
+
+set(SRCS
+ pml2mmlOut.cpp
+ ${HEADERS}
+)
+
+include_directories(${MML_INCLUDE_DIRECTORIES})
+link_directories(${MML_LINK_DIRECTORIES})
+add_executable(pml2mmlOut ${SRCS})
+qt5_use_modules(pml2mmlOut ${QT_COMPONENTS})
+target_link_libraries(pml2mmlOut ${pml2mmlOut_LIBRARIES})
+add_dependencies(pml2mmlOut ${MONITORING_DEPENDENCY})
diff --git a/modeling/applications/mml/pml2mmlOut/pml2mmlOut.cpp b/modeling/applications/mml/pml2mmlOut/pml2mmlOut.cpp
new file mode 100644
index 0000000..777a8cf
--- /dev/null
+++ b/modeling/applications/mml/pml2mmlOut/pml2mmlOut.cpp
@@ -0,0 +1,90 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <sstream>
+
+#include <pml/PhysicalModel.h>
+
+#include <MonitorOut.hxx>
+
+#ifdef MML_GENERATE_GUI
+#include <QApplication>
+#endif
+
+using namespace std;
+
+int
+main (int argc, char* argv[]) {
+ if (argc != 2) {
+ cerr << "usage: " << argv[0] << " file.pml" << endl;
+ return 1;
+ }
+
+ try {
+#ifdef MML_GENERATE_GUI
+ QApplication app(argc, argv);
+#endif
+ PhysicalModel pml=PhysicalModel(argv[1]);
+
+ ostringstream indexes;
+ ostringstream data;
+ double pos[3];
+ for (int i =0; i<pml.getNumberOfAtoms(); i++) {
+ Atom* a=(Atom*)(pml.getAtoms()->getStructure(i));
+ indexes << a->getIndex() << " ";
+ a->getPosition(pos);
+ data << pos[0] << " " << pos[1] << " " << pos[2] << " ";
+ }
+
+ string filename=argv[1];
+ string::size_type pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += ".mml";
+ }
+
+ mml::MonitoringOut mml(argv[1]);
+ mml::TimeStep t =mml::TimeStep(1000000, "s");
+ mml::Monitor monit =mml::Monitor(mml::TimeParameter(0.0,"s"),mml::TimeParameter(1000000.0,"s"),mml::MonitorType::Position,1,"");
+ monit.data(data.str().c_str());
+ monit.indexes(indexes.str().c_str());
+ t.monitor().push_back(monit);
+ mml::MonitoringOut::time_sequence& ts(mml.time());
+ ts.push_back(t);
+
+ xml_schema::namespace_infomap map;
+ map[""].name = "";
+ map[""].schema = "";
+
+ ofstream ofs(filename.c_str());
+ mml::monitoringOut(ofs, mml, map);
+
+ } catch (const xml_schema::exception& e) {
+ cerr << e << endl;
+ return 1;
+ }
+}
+
diff --git a/modeling/applications/mml/scn2pml/CMakeLists.txt b/modeling/applications/mml/scn2pml/CMakeLists.txt
new file mode 100644
index 0000000..0d6a597
--- /dev/null
+++ b/modeling/applications/mml/scn2pml/CMakeLists.txt
@@ -0,0 +1,33 @@
+project(scn2pml)
+
+# specific flags needed for sofa
+add_definitions(-DSOFA_SUPPORT)
+add_definitions(-DSOFA_PATH="${SOFA_BUILD_DIR}")
+add_definitions(-DSOFA_STABLE)
+
+if(MML_GENERATE_GUI)
+ find_package(Qt4 REQUIRED)
+ include(${QT_USE_FILE})
+ set(scn2pml_LIBRARIES ${QT_LIBRARIES})
+ add_definitions(-DMML_GENERATE_GUI)
+endif()
+
+set(scn2pml_LIBRARIES
+ ${scn2pml_LIBRARIES}
+ ${MML_DEPENDENCY}
+)
+
+
+set(HEADERS )
+
+set(SRCS
+ scn2pml.cpp
+ ${HEADERS}
+)
+
+
+include_directories(${MML_INCLUDE_DIRECTORIES})
+link_directories(${MML_LINK_DIRECTORIES})
+add_executable(scn2pml ${SRCS})
+target_link_libraries(scn2pml ${scn2pml_LIBRARIES})
+add_dependencies(scn2pml ${MONITORING_DEPENDENCY})
diff --git a/modeling/applications/mml/scn2pml/scn2pml.cpp b/modeling/applications/mml/scn2pml/scn2pml.cpp
new file mode 100644
index 0000000..e8b734b
--- /dev/null
+++ b/modeling/applications/mml/scn2pml/scn2pml.cpp
@@ -0,0 +1,63 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+
+#include <monitoring/SofaSimulator.h>
+
+#ifdef MML_GENERATE_GUI
+#include <QApplication>
+#endif
+
+using namespace std;
+
+int
+main (int argc, char* argv[]) {
+ if (argc != 2) {
+ cerr << "usage: " << argv[0] << " file.scn" << endl;
+ return 1;
+ }
+
+ try {
+#ifdef MML_GENERATE_GUI
+ QApplication app(argc, argv);
+#endif
+ SofaSimulator* simul = new SofaSimulator(NULL,argv[1]);
+
+ string pmlFileName=argv[1];
+ string::size_type pLast = pmlFileName.rfind(".");
+ if (pLast != string::npos) {
+ pmlFileName.erase(pLast);
+ pmlFileName += ".pml";
+ }
+
+ simul->createPml(argv[1],pmlFileName.c_str());
+
+ } catch (const xml_schema::exception& e) {
+ cerr << e << endl;
+ return 1;
+ }
+}
+
diff --git a/modeling/applications/pmltest/CMakeLists.txt b/modeling/applications/pmltest/CMakeLists.txt
new file mode 100644
index 0000000..2bf76c8
--- /dev/null
+++ b/modeling/applications/pmltest/CMakeLists.txt
@@ -0,0 +1,72 @@
+set(PMLTEST_TARGET_NAME library${TARGET_NAME_SEPARATOR}pmltest)
+
+set(SRCS pmltest.cpp)
+include_directories(${CAMITK_INCLUDE_DIR}/libraries)
+link_directories(${CAMITK_LINK_DIRECTORIES})
+add_executable(${PMLTEST_TARGET_NAME} ${SRCS})
+target_link_libraries(${PMLTEST_TARGET_NAME} ${PML_DEPENDENCIES}) # both pml and pmlschema are needed
+add_dependencies(${PMLTEST_TARGET_NAME} ${PML_DEPENDENCY}) # as pml depends on pmlschema, only pml needed here
+
+# XSD Dependencies
+find_package(XSD REQUIRED)
+include_directories(${XSD_INCLUDE_DIR})
+
+# in debug mode, add postfix
+if (MSVC)
+ set_target_properties(${PMLTEST_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
+endif()
+
+#----------
+# Testing
+#----------
+set(PMLTEST_BASENAME "pml-${PMLTEST_TARGET_NAME}")
+# TODO build one pml file with every tests in it, use it and check that inputFilename-output-pmltest.pml is identical to inputFilename.pml
+camitk_init_test(${PMLTEST_TARGET_NAME})
+# should pass because lmltest run with no arguments shows usage and exit success
+camitk_add_test(PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+# should pass because invoking lmltest with a faulty arguments results in printing
+# an "Argument error" message (and exit failure)
+camitk_add_test(EXECUTABLE_ARGS "-error"
+ PASS_REGULAR_EXPRESSION "Argument errors: "
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+# should pass because reading a file and writing it back should not modify it (input == output)
+if(NOT WIN32)#this test fails on windows7 VM due to missing tweek for -debug
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/cube1.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/cube1.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/cube2.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/cube2.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/cube3.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/cube3.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/cube4.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/cube4.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/customProperty-example.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/customProperty-example.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/diaph.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/diaph.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/human-trunk.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/human-trunk.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/icosahedron.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/icosahedron.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/visage.pml"
+ PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/visage.pml
+ PROJECT_NAME ${PMLTEST_BASENAME} TEST_SUFFIX "-")
+
+endif()
diff --git a/modeling/applications/pmltest/cube1.pml b/modeling/applications/pmltest/cube1.pml
new file mode 100644
index 0000000..413fe9f
--- /dev/null
+++ b/modeling/applications/pmltest/cube1.pml
@@ -0,0 +1,80 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="cube 1" nrOfAtoms="8"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="1"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
+<nrOfStructures value="8"/>
+<atom>
+<atomProperties index="0" x="-5" y="5" z="-5" name="a0"/>
+</atom>
+<atom>
+<atomProperties index="1" x="5" y="5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="2" x="5" y="5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-5" y="5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-5" y="-5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="5" x="5" y="-5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="6" x="5" y="-5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-5" y="-5" z="5"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="Exclusive components">
+<structuralComponent name="One cubic cell" mode="WIREFRAME_AND_SURFACE">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="HEXAHEDRON"/>
+<nrOfStructures value="8"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Informative Components">
+<structuralComponent name="up facet" mode="SURFACE">
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+</structuralComponent>
+<structuralComponent name="down facet" mode="SURFACE">
+<nrOfStructures value="4"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/cube2.pml b/modeling/applications/pmltest/cube2.pml
new file mode 100644
index 0000000..0bec57f
--- /dev/null
+++ b/modeling/applications/pmltest/cube2.pml
@@ -0,0 +1,394 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="cube 2" nrOfAtoms="14"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="39"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
+<nrOfStructures value="14"/>
+<atom>
+<atomProperties index="0" x="-5" y="5" z="-5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="1" x="5" y="5" z="-5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="2" x="5" y="5" z="5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-5" y="5" z="5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-5" y="-5" z="-5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="5" x="5" y="-5" z="-5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="6" x="5" y="-5" z="5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-5" y="-5" z="5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="8" x="0" y="5" z="0" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="9" x="0" y="-5" z="0" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="10" x="0" y="0" z="-5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="11" x="0" y="0" z="5" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="12" x="5" y="0" z="0" mass="100"/>
+</atom>
+<atom>
+<atomProperties index="13" x="-5" y="0" z="0" mass="100"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="exclusive component">
+<structuralComponent name="Atoms of the elastic region">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="POLY_VERTEX" phymulType="elastic"/>
+<nrOfStructures value="14"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+<atomRef index="8"/>
+<atomRef index="9"/>
+<atomRef index="10"/>
+<atomRef index="11"/>
+<atomRef index="12"/>
+<atomRef index="13"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Phymul Informative Component">
+<structuralComponent name="Element Neighborhoods">
+<color r="0.5" g="0.5" b="0.5" a="1"/>
+<nrOfStructures value="14"/>
+<cell>
+<cellProperties index="0" type="POLY_VERTEX" name="E#0"/>
+<nrOfStructures value="6"/>
+<atomRef index="1"/>
+<atomRef index="10"/>
+<atomRef index="4"/>
+<atomRef index="13"/>
+<atomRef index="3"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="1" type="POLY_VERTEX" name="E#1"/>
+<nrOfStructures value="6"/>
+<atomRef index="2"/>
+<atomRef index="12"/>
+<atomRef index="5"/>
+<atomRef index="10"/>
+<atomRef index="0"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="2" type="POLY_VERTEX" name="E#2"/>
+<nrOfStructures value="6"/>
+<atomRef index="3"/>
+<atomRef index="11"/>
+<atomRef index="6"/>
+<atomRef index="12"/>
+<atomRef index="1"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="3" type="POLY_VERTEX" name="E#3"/>
+<nrOfStructures value="6"/>
+<atomRef index="0"/>
+<atomRef index="13"/>
+<atomRef index="7"/>
+<atomRef index="11"/>
+<atomRef index="2"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="4" type="POLY_VERTEX" name="E#4"/>
+<nrOfStructures value="6"/>
+<atomRef index="0"/>
+<atomRef index="10"/>
+<atomRef index="5"/>
+<atomRef index="9"/>
+<atomRef index="7"/>
+<atomRef index="13"/>
+</cell>
+<cell>
+<cellProperties index="5" type="POLY_VERTEX" name="E#5"/>
+<nrOfStructures value="6"/>
+<atomRef index="1"/>
+<atomRef index="12"/>
+<atomRef index="6"/>
+<atomRef index="9"/>
+<atomRef index="4"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="6" type="POLY_VERTEX" name="E#6"/>
+<nrOfStructures value="6"/>
+<atomRef index="2"/>
+<atomRef index="11"/>
+<atomRef index="7"/>
+<atomRef index="9"/>
+<atomRef index="5"/>
+<atomRef index="12"/>
+</cell>
+<cell>
+<cellProperties index="7" type="POLY_VERTEX" name="E#7"/>
+<nrOfStructures value="6"/>
+<atomRef index="3"/>
+<atomRef index="13"/>
+<atomRef index="4"/>
+<atomRef index="9"/>
+<atomRef index="6"/>
+<atomRef index="11"/>
+</cell>
+<cell>
+<cellProperties index="8" type="POLY_VERTEX" name="E#8"/>
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="3"/>
+<atomRef index="2"/>
+<atomRef index="1"/>
+</cell>
+<cell>
+<cellProperties index="9" type="POLY_VERTEX" name="E#9"/>
+<nrOfStructures value="4"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+<cell>
+<cellProperties index="10" type="POLY_VERTEX" name="E#10"/>
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="5"/>
+<atomRef index="4"/>
+</cell>
+<cell>
+<cellProperties index="11" type="POLY_VERTEX" name="E#11"/>
+<nrOfStructures value="4"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="7"/>
+<atomRef index="6"/>
+</cell>
+<cell>
+<cellProperties index="12" type="POLY_VERTEX" name="E#12"/>
+<nrOfStructures value="4"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="6"/>
+<atomRef index="5"/>
+</cell>
+<cell>
+<cellProperties index="13" type="POLY_VERTEX" name="E#13"/>
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="4"/>
+<atomRef index="7"/>
+<atomRef index="3"/>
+</cell>
+</structuralComponent>
+<structuralComponent name="Facet of region #0 (cubeMaud)" mode="WIREFRAME_AND_SURFACE">
+<color r="1" g="0.89" b="0.53" a="1"/>
+<nrOfStructures value="24"/>
+<cell>
+<cellProperties index="14" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="15" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="10"/>
+<atomRef index="4"/>
+</cell>
+<cell>
+<cellProperties index="16" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="4"/>
+<atomRef index="13"/>
+</cell>
+<cell>
+<cellProperties index="17" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="13"/>
+<atomRef index="3"/>
+</cell>
+<cell>
+<cellProperties index="18" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="3"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="19" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="8"/>
+<atomRef index="1"/>
+</cell>
+<cell>
+<cellProperties index="20" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="12"/>
+</cell>
+<cell>
+<cellProperties index="21" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="12"/>
+<atomRef index="5"/>
+</cell>
+<cell>
+<cellProperties index="22" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="5"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="23" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="8"/>
+<atomRef index="2"/>
+</cell>
+<cell>
+<cellProperties index="24" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="11"/>
+</cell>
+<cell>
+<cellProperties index="25" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="11"/>
+<atomRef index="6"/>
+</cell>
+<cell>
+<cellProperties index="26" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="6"/>
+<atomRef index="12"/>
+</cell>
+<cell>
+<cellProperties index="27" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="8"/>
+<atomRef index="3"/>
+</cell>
+<cell>
+<cellProperties index="28" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="3"/>
+<atomRef index="13"/>
+<atomRef index="7"/>
+</cell>
+<cell>
+<cellProperties index="29" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="3"/>
+<atomRef index="7"/>
+<atomRef index="11"/>
+</cell>
+<cell>
+<cellProperties index="30" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="4"/>
+<atomRef index="10"/>
+<atomRef index="5"/>
+</cell>
+<cell>
+<cellProperties index="31" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="9"/>
+</cell>
+<cell>
+<cellProperties index="32" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="4"/>
+<atomRef index="9"/>
+<atomRef index="7"/>
+</cell>
+<cell>
+<cellProperties index="33" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="4"/>
+<atomRef index="7"/>
+<atomRef index="13"/>
+</cell>
+<cell>
+<cellProperties index="34" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="5"/>
+<atomRef index="12"/>
+<atomRef index="6"/>
+</cell>
+<cell>
+<cellProperties index="35" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="9"/>
+</cell>
+<cell>
+<cellProperties index="36" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="6"/>
+<atomRef index="11"/>
+<atomRef index="7"/>
+</cell>
+<cell>
+<cellProperties index="37" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+<atomRef index="9"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/cube3.pml b/modeling/applications/pmltest/cube3.pml
new file mode 100644
index 0000000..c9695eb
--- /dev/null
+++ b/modeling/applications/pmltest/cube3.pml
@@ -0,0 +1,133 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="simple cubic element" nrOfAtoms="8"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="7"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="Atoms" externW="0" mass="0" viscosityW="0">
+<color r="0.972549" g="0.788235" b="1" a="1"/>
+<nrOfStructures value="8"/>
+<atom>
+<atomProperties index="0" x="-0.05" y="0.05" z="-0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="1" x="0.05" y="0.05" z="-0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="2" x="0.05" y="0.05" z="0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-0.05" y="0.05" z="0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-0.05" y="-0.05" z="-0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="5" x="0.05" y="-0.05" z="-0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="6" x="0.05" y="-0.05" z="0.05" mass="1"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-0.05" y="-0.05" z="0.05" mass="1"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="Exclusive Component">
+<structuralComponent name="Element list" externW="0" mass="0" viscosityW="0">
+<color r="0.972549" g="0.788235" b="1" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="POLY_VERTEX" aggregat="0" externW="0" mass="0" masterRegion="0" viscosityW="0"/>
+<color r="0.972549" g="0.788235" b="1" a="1"/>
+<nrOfStructures value="8"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Informative Component">
+<structuralComponent name="Facets" mode="WIREFRAME_AND_SURFACE">
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="6"/>
+<cell>
+<cellProperties index="1" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+</cell>
+<cell>
+<cellProperties index="2" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="1"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="2"/>
+</cell>
+<cell>
+<cellProperties index="3" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="2"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+<atomRef index="3"/>
+</cell>
+<cell>
+<cellProperties index="4" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="3"/>
+<atomRef index="7"/>
+<atomRef index="4"/>
+<atomRef index="0"/>
+</cell>
+<cell>
+<cellProperties index="5" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="1"/>
+</cell>
+<cell>
+<cellProperties index="6" type="QUAD"/>
+<color r="0.972549" g="0.843137" b="1" a="0.607843"/>
+<nrOfStructures value="4"/>
+<atomRef index="4"/>
+<atomRef index="7"/>
+<atomRef index="6"/>
+<atomRef index="5"/>
+</cell>
+</structuralComponent>
+<structuralComponent name="Cube base" mode="SURFACE" externW="0" mass="0" viscosityW="0">
+<nrOfStructures value="4"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/cube4.pml b/modeling/applications/pmltest/cube4.pml
new file mode 100644
index 0000000..33e538f
--- /dev/null
+++ b/modeling/applications/pmltest/cube4.pml
@@ -0,0 +1,82 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="cube 4" nrOfAtoms="8"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="1"
+ comment="This is a comment, testing the physicalModel properties!"
+ otherGlobalAttributes="4.0"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
+<nrOfStructures value="8"/>
+<atom>
+<atomProperties index="0" x="-5" y="5" z="-5" name="a0"/>
+</atom>
+<atom>
+<atomProperties index="1" x="5" y="5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="2" x="5" y="5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-5" y="5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-5" y="-5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="5" x="5" y="-5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="6" x="5" y="-5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-5" y="-5" z="5"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="Exclusive components">
+<structuralComponent name="One cubic cell" mode="WIREFRAME_AND_SURFACE">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="HEXAHEDRON"/>
+<nrOfStructures value="8"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Informative Components">
+<structuralComponent name="up facet" mode="SURFACE">
+<nrOfStructures value="4"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+</structuralComponent>
+<structuralComponent name="down facet" mode="SURFACE">
+<nrOfStructures value="4"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/customProperty-example.pml b/modeling/applications/pmltest/customProperty-example.pml
new file mode 100644
index 0000000..9182d1c
--- /dev/null
+++ b/modeling/applications/pmltest/customProperty-example.pml
@@ -0,0 +1,60 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="custom physical properties test" nrOfAtoms="8"
+ nrOfExclusiveComponents="1"
+ nrOfCells="1"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="atom list">
+<nrOfStructures value="8"/>
+<atom>
+<atomProperties index="0" x="-5" y="5" z="-5" name="a0" atomIntProp="-103"/>
+</atom>
+<atom>
+<atomProperties index="1" x="5" y="5" z="-5" atomStringProp="a string property!"/>
+</atom>
+<atom>
+<atomProperties index="2" x="5" y="5" z="5" AtomUIntProp="141304"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-5" y="5" z="5" aToMdOuBlEpRoP="-155.34"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-5" y="-5" z="-5" aToMdOuBlEpRoP="4.88801" atomStringProp="same string property!"/>
+</atom>
+<atom>
+<atomProperties index="5" x="5" y="-5" z="-5"/>
+</atom>
+<atom>
+<atomProperties index="6" x="5" y="-5" z="5"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-5" y="-5" z="5"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="Exclusive components" evenHere="it works!" globalToMulticomponent="yes">
+<structuralComponent name="One SC" mode="WIREFRAME_AND_SURFACE" scBoolProp="1" scCharProp="$">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="HEXAHEDRON" name="cell property test" cellFloatProp="100.256" cellIntProp="4" scBoolProp="1" scCharProp="@"/>
+<nrOfStructures value="8"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/diaph.pml b/modeling/applications/pmltest/diaph.pml
new file mode 100644
index 0000000..05ca2c6
--- /dev/null
+++ b/modeling/applications/pmltest/diaph.pml
@@ -0,0 +1,7237 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Phymulob" nrOfAtoms="283"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="767"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
+<nrOfStructures value="283"/>
+<atom>
+<atomProperties index="0" x="-0.525" y="1.41491" z="-0.88"/>
+</atom>
+<atom>
+<atomProperties index="1" x="0.225" y="1.5" z="-0.88"/>
+</atom>
+<atom>
+<atomProperties index="2" x="0.375" y="1.45" z="-0.88"/>
+</atom>
+<atom>
+<atomProperties index="3" x="0.525" y="1.41019" z="-0.88"/>
+</atom>
+<atom>
+<atomProperties index="4" x="0.675" y="1.38019" z="-0.88"/>
+</atom>
+<atom>
+<atomProperties index="5" x="0.825" y="1.35495" z="-0.84"/>
+</atom>
+<atom>
+<atomProperties index="6" x="-0.825987" y="1.25572" z="-0.771593"/>
+</atom>
+<atom>
+<atomProperties index="7" x="-0.674784" y="1.33001" z="-0.819262"/>
+</atom>
+<atom>
+<atomProperties index="8" x="-0.375" y="1.5" z="-0.86"/>
+</atom>
+<atom>
+<atomProperties index="9" x="0.225" y="2.1218" z="-0.77"/>
+</atom>
+<atom>
+<atomProperties index="10" x="0.375" y="2.408" z="-0.77"/>
+</atom>
+<atom>
+<atomProperties index="11" x="0.525" y="2.55791" z="-0.77"/>
+</atom>
+<atom>
+<atomProperties index="12" x="0.675" y="2.59199" z="-0.77"/>
+</atom>
+<atom>
+<atomProperties index="13" x="0.975108" y="1.30849" z="-0.773181"/>
+</atom>
+<atom>
+<atomProperties index="14" x="-0.975" y="1.2101" z="-0.66"/>
+</atom>
+<atom>
+<atomProperties index="15" x="-0.825" y="2.42466" z="-0.66"/>
+</atom>
+<atom>
+<atomProperties index="16" x="-0.675" y="2.47108" z="-0.66"/>
+</atom>
+<atom>
+<atomProperties index="17" x="-0.525" y="2.41968" z="-0.66"/>
+</atom>
+<atom>
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diff --git a/modeling/applications/pmltest/human-trunk.pml b/modeling/applications/pmltest/human-trunk.pml
new file mode 100644
index 0000000..23bff10
--- /dev/null
+++ b/modeling/applications/pmltest/human-trunk.pml
@@ -0,0 +1,5243 @@
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diff --git a/modeling/applications/pmltest/icosahedron.pml b/modeling/applications/pmltest/icosahedron.pml
new file mode 100644
index 0000000..583d042
--- /dev/null
+++ b/modeling/applications/pmltest/icosahedron.pml
@@ -0,0 +1,347 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Ico" nrOfAtoms="12"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="3"
+ nrOfCells="33"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list" myCustomProperty1="123" myCustomProperty2="another value">
+<nrOfStructures value="12"/>
+<atom>
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+</atom>
+<atom>
+<atomProperties index="1" x="40.4508" y="77.8211" z="-13.143" myCustomProperty2="yo!"/>
+</atom>
+<atom>
+<atomProperties index="2" x="25" y="77.8211" z="34.41"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-25" y="77.8211" z="34.41" myCustomProperty1="999" myCustomProperty2="2 customs at the same time"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-40.4508" y="77.8211" z="-13.143"/>
+</atom>
+<atom>
+<atomProperties index="5" x="25" y="120.354" z="-34.41"/>
+</atom>
+<atom>
+<atomProperties index="6" x="40.4508" y="120.354" z="13.143"/>
+</atom>
+<atom>
+<atomProperties index="7" x="0" y="120.354" z="42.533"/>
+</atom>
+<atom>
+<atomProperties index="8" x="-40.4508" y="120.354" z="13.143"/>
+</atom>
+<atom>
+<atomProperties index="9" x="-25" y="120.354" z="-34.41"/>
+</atom>
+<atom>
+<atomProperties index="10" x="0" y="51.5346" z="0"/>
+</atom>
+<atom>
+<atomProperties index="11" x="0" y="146.64" z="0"/>
+</atom>
+</structuralComponent>
+</atoms>
+<!-- list of exclusive components : -->
+<exclusiveComponents>
+<multiComponent name="Regions">
+<structuralComponent name="Region #0 icosahedron" mode="POINTS">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="1"/>
+<cell>
+<cellProperties index="0" type="POLY_VERTEX" myCustomProperty1="14.5" myCustomProperty2="2"/>
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+<atomRef index="0"/>
+<atomRef index="1"/>
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+<atomRef index="9"/>
+<atomRef index="10"/>
+<atomRef index="11"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Facets and neighbourhood">
+<structuralComponent name="Element Neighborhoods">
+<color r="0.5" g="0.5" b="0.5" a="1"/>
+<nrOfStructures value="12"/>
+<cell>
+<cellProperties index="1" type="POLY_VERTEX"/>
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+<atomRef index="10"/>
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+<cellProperties index="11" type="POLY_VERTEX"/>
+<nrOfStructures value="5"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+</cell>
+<cell>
+<cellProperties index="12" type="POLY_VERTEX"/>
+<nrOfStructures value="5"/>
+<atomRef index="9"/>
+<atomRef index="8"/>
+<atomRef index="7"/>
+<atomRef index="6"/>
+<atomRef index="5"/>
+</cell>
+</structuralComponent>
+<structuralComponent name="Facet of region #0 (icosahedron)" mode="WIREFRAME_AND_SURFACE">
+<color r="0.8" g="0.8" b="0.2" a="1"/>
+<nrOfStructures value="15"/>
+<cell>
+<cellProperties index="13" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="10"/>
+<atomRef index="4"/>
+</cell>
+<cell>
+<cellProperties index="14" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="4"/>
+<atomRef index="9"/>
+</cell>
+<cell>
+<cellProperties index="15" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="9"/>
+<atomRef index="5"/>
+</cell>
+<cell>
+<cellProperties index="16" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="5"/>
+<atomRef index="1"/>
+</cell>
+<cell>
+<cellProperties index="17" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="0"/>
+<atomRef index="1"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="18" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="5"/>
+<atomRef index="6"/>
+</cell>
+<cell>
+<cellProperties index="19" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="6"/>
+<atomRef index="2"/>
+</cell>
+<cell>
+<cellProperties index="20" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="1"/>
+<atomRef index="2"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="21" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="3"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="22" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="3"/>
+<atomRef index="8"/>
+<atomRef index="4"/>
+</cell>
+<cell>
+<cellProperties index="23" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="3"/>
+<atomRef index="4"/>
+<atomRef index="10"/>
+</cell>
+<cell>
+<cellProperties index="24" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="4"/>
+<atomRef index="8"/>
+<atomRef index="9"/>
+</cell>
+<cell>
+<cellProperties index="25" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="3"/>
+<atomRef index="7"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="26" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="7"/>
+<atomRef index="3"/>
+</cell>
+<cell>
+<cellProperties index="27" type="TRIANGLE"/>
+<nrOfStructures value="3"/>
+<atomRef index="2"/>
+<atomRef index="6"/>
+<atomRef index="7"/>
+</cell>
+</structuralComponent>
+<structuralComponent name="Facet of Chapeau(5)" mode="WIREFRAME_AND_SURFACE">
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="5"/>
+<cell>
+<cellProperties index="28" type="TRIANGLE"/>
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="3"/>
+<atomRef index="5"/>
+<atomRef index="9"/>
+<atomRef index="11"/>
+</cell>
+<cell>
+<cellProperties index="29" type="TRIANGLE"/>
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="3"/>
+<atomRef index="5"/>
+<atomRef index="11"/>
+<atomRef index="6"/>
+</cell>
+<cell>
+<cellProperties index="30" type="TRIANGLE"/>
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="3"/>
+<atomRef index="6"/>
+<atomRef index="11"/>
+<atomRef index="7"/>
+</cell>
+<cell>
+<cellProperties index="31" type="TRIANGLE"/>
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="3"/>
+<atomRef index="7"/>
+<atomRef index="11"/>
+<atomRef index="8"/>
+</cell>
+<cell>
+<cellProperties index="32" type="TRIANGLE"/>
+<color r="1" g="0.74902" b="0" a="1"/>
+<nrOfStructures value="3"/>
+<atomRef index="8"/>
+<atomRef index="11"/>
+<atomRef index="9"/>
+</cell>
+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltest/pmltest.cpp b/modeling/applications/pmltest/pmltest.cpp
new file mode 100644
index 0000000..129e6f2
--- /dev/null
+++ b/modeling/applications/pmltest/pmltest.cpp
@@ -0,0 +1,129 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+#include <string.h>
+#include <sys/stat.h>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/Atom.h>
+#include <pml/StructuralComponent.h>
+
+
+int main ( int argc, char ** argv ) {
+ bool inputTest = false;
+ bool statMode = false;
+ std::string ifile;
+ std::string ofile;
+
+ // analyze arguments
+ for (int i=1; i<argc; i++) {
+ if (!strcmp(argv[i],"-i")) {
+ ifile = argv[i+1];
+ inputTest = true;
+ }
+
+ if (!strcmp(argv[i],"-stat")) {
+ statMode = true;
+ }
+ }
+
+ if (!inputTest) {
+ if (argc>1) {
+ std::cout << "Argument errors: ";
+
+ for(int i=1; i<argc; i++) {
+ std::cout << "[" << argv[i] << "] ";
+ }
+ }
+
+ cout << endl;
+ cout << "usage: pmltest [-i file.pml] [-stat]" << endl;
+ cout << "\t-i in.xml\treading test: read the file, create object and then print them on stdout" << endl;
+ cout << "\t-stat\t\tsame as above but instead of printing back on stdout, show some stats" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+
+ if (argc>1)
+ return EXIT_FAILURE;
+ else
+ return EXIT_SUCCESS;
+ }
+
+ try {
+ string filename ( ifile );
+
+
+ PhysicalModel pm ( filename.c_str() );
+
+ if (statMode) {
+ cout << "name= " << pm.getName() << endl;
+ cout << "nr of atoms= " << pm.getNumberOfAtoms() << endl;
+ cout << "nr of cells= " << pm.getNumberOfCells() << endl;
+
+ double bary[3];
+
+ for ( int i=0; i<3; i++ )
+ bary[i] = 0.0;
+
+ double pos[3];
+
+ for (unsigned int i=0; i<pm.getNumberOfAtoms(); i++ ) {
+ dynamic_cast<Atom*>(pm.getAtoms()->getStructure( i ))->getPosition ( pos );
+
+ for ( int j=0; j<3; j++ )
+ bary[j] += pos[j];
+ }
+
+ for ( int i=0; i<3; i++ )
+ bary[i] /= pm.getNumberOfAtoms();
+
+ cout << "barycenters of atoms= (" << bary[0] << "," << bary[1] << "," << bary[2] << ")" << endl;
+
+ unsigned int pLast = filename.rfind ( "." );
+
+ if ( pLast != string::npos ) {
+ filename.erase ( pLast );
+ filename += "-output-pmltest.pml";
+ } else
+ filename="output-pmltest.pml";
+
+ cout << "-> saved as " << filename << endl;
+ ofstream outputFile ( filename.c_str() );
+ pm.xmlPrint ( outputFile );
+ } else {
+ pm.xmlPrint(cout);
+ }
+
+ return EXIT_SUCCESS;
+ } catch ( PMLAbortException ae ) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+
+ return EXIT_FAILURE;
+
+}
diff --git a/modeling/applications/pmltest/visage.pml b/modeling/applications/pmltest/visage.pml
new file mode 100644
index 0000000..1263672
--- /dev/null
+++ b/modeling/applications/pmltest/visage.pml
@@ -0,0 +1,49201 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Face mesh" nrOfAtoms="4215"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="1"
+ nrOfCells="2885"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="The atoms">
+<nrOfStructures value="4215"/>
+<atom>
+<atomProperties index="0" x="-0.0280686" y="0.390867" z="0.144781"/>
+</atom>
+<atom>
+<atomProperties index="1" x="-0.0252617" y="0.387765" z="0.14979"/>
+</atom>
+<atom>
+<atomProperties index="2" x="-0.0224549" y="0.385167" z="0.152963"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-0.019648" y="0.383037" z="0.155079"/>
+</atom>
+<atom>
+<atomProperties index="4" x="-0.00842058" y="0.378456" z="0.15765"/>
+</atom>
+<atom>
+<atomProperties index="5" x="-0.00280686" y="0.377916" z="0.158033"/>
+</atom>
+<atom>
+<atomProperties index="6" x="0" y="0.377883" z="0.158046"/>
+</atom>
+<atom>
+<atomProperties index="7" x="0.00561372" y="0.378084" z="0.157936"/>
+</atom>
+<atom>
+<atomProperties index="8" x="0.0168412" y="0.381339" z="0.156397"/>
+</atom>
+<atom>
+<atomProperties index="9" x="0.019648" y="0.383037" z="0.155079"/>
+</atom>
+<atom>
+<atomProperties index="10" x="0.0224549" y="0.385167" z="0.152963"/>
+</atom>
+<atom>
+<atomProperties index="11" x="0.0252617" y="0.387765" z="0.14979"/>
+</atom>
+<atom>
+<atomProperties index="12" x="0.0280686" y="0.390867" z="0.144781"/>
+</atom>
+<atom>
+<atomProperties index="13" x="0.0252617" y="0.393138" z="0.149139"/>
+</atom>
+<atom>
+<atomProperties index="14" x="0.0224549" y="0.395211" z="0.152675"/>
+</atom>
+<atom>
+<atomProperties index="15" x="0.019648" y="0.397086" z="0.15547"/>
+</atom>
+<atom>
+<atomProperties index="16" x="0.0168412" y="0.398757" z="0.157607"/>
+</atom>
+<atom>
+<atomProperties index="17" x="0.0140343" y="0.400209" z="0.158697"/>
+</atom>
+<atom>
+<atomProperties index="18" x="0.0112274" y="0.401418" z="0.159469"/>
+</atom>
+<atom>
+<atomProperties index="19" x="0.00842058" y="0.402306" z="0.15984"/>
+</atom>
+<atom>
+<atomProperties index="20" x="0.00280686" y="0.400908" z="0.159946"/>
+</atom>
+<atom>
+<atomProperties index="21" x="0" y="0.400218" z="0.159968"/>
+</atom>
+<atom>
+<atomProperties index="22" x="-0.00561372" y="0.402126" z="0.159809"/>
+</atom>
+<atom>
+<atomProperties index="23" x="-0.00842058" y="0.402306" z="0.15984"/>
+</atom>
+<atom>
+<atomProperties index="24" x="-0.0112274" y="0.401418" z="0.159469"/>
+</atom>
+<atom>
+<atomProperties index="25" x="-0.0140343" y="0.400209" z="0.158697"/>
+</atom>
+<atom>
+<atomProperties index="26" x="-0.0168412" y="0.398757" z="0.157607"/>
+</atom>
+<atom>
+<atomProperties index="27" x="-0.019648" y="0.397086" z="0.15547"/>
+</atom>
+<atom>
+<atomProperties index="28" x="-0.0224549" y="0.395211" z="0.152675"/>
+</atom>
+<atom>
+<atomProperties index="29" x="-0.0252617" y="0.393138" z="0.149139"/>
+</atom>
+<atom>
+<atomProperties index="30" x="-0.0280686" y="0.390869" z="0.150334"/>
+</atom>
+<atom>
+<atomProperties index="31" x="-0.0252617" y="0.387766" z="0.155343"/>
+</atom>
+<atom>
+<atomProperties index="32" x="-0.0224549" y="0.385167" z="0.159288"/>
+</atom>
+<atom>
+<atomProperties index="33" x="-0.019648" y="0.383037" z="0.162303"/>
+</atom>
+<atom>
+<atomProperties index="34" x="-0.00842058" y="0.378457" z="0.16767"/>
+</atom>
+<atom>
+<atomProperties index="35" x="-0.00280686" y="0.377916" z="0.168057"/>
+</atom>
+<atom>
+<atomProperties index="36" x="0" y="0.377882" z="0.16807"/>
+</atom>
+<atom>
+<atomProperties index="37" x="0.00561372" y="0.378083" z="0.167958"/>
+</atom>
+<atom>
+<atomProperties index="38" x="0.0168412" y="0.38134" z="0.164522"/>
+</atom>
+<atom>
+<atomProperties index="39" x="0.019648" y="0.383037" z="0.162303"/>
+</atom>
+<atom>
+<atomProperties index="40" x="0.0224549" y="0.385167" z="0.159288"/>
+</atom>
+<atom>
+<atomProperties index="41" x="0.0252617" y="0.387766" z="0.155343"/>
+</atom>
+<atom>
+<atomProperties index="42" x="0.0280686" y="0.390869" z="0.150334"/>
+</atom>
+<atom>
+<atomProperties index="43" x="0.0252617" y="0.393137" z="0.154692"/>
+</atom>
+<atom>
+<atomProperties index="44" x="0.0224549" y="0.395211" z="0.158228"/>
+</atom>
+<atom>
+<atomProperties index="45" x="0.019648" y="0.397086" z="0.161023"/>
+</atom>
+<atom>
+<atomProperties index="46" x="0.0168412" y="0.398757" z="0.16316"/>
+</atom>
+<atom>
+<atomProperties index="47" x="0.0140343" y="0.40021" z="0.164722"/>
+</atom>
+<atom>
+<atomProperties index="48" x="0.0112274" y="0.401419" z="0.165794"/>
+</atom>
+<atom>
+<atomProperties index="49" x="0.00842058" y="0.402305" z="0.166464"/>
+</atom>
+<atom>
+<atomProperties index="50" x="0.00280686" y="0.400907" z="0.166962"/>
+</atom>
+<atom>
+<atomProperties index="51" x="0" y="0.400219" z="0.166984"/>
+</atom>
+<atom>
+<atomProperties index="52" x="-0.00561372" y="0.402127" z="0.166822"/>
+</atom>
+<atom>
+<atomProperties index="53" x="-0.00842058" y="0.402305" z="0.166464"/>
+</atom>
+<atom>
+<atomProperties index="54" x="-0.0112274" y="0.401419" z="0.165794"/>
+</atom>
+<atom>
+<atomProperties index="55" x="-0.0140343" y="0.40021" z="0.164722"/>
+</atom>
+<atom>
+<atomProperties index="56" x="-0.0168412" y="0.398757" z="0.16316"/>
+</atom>
+<atom>
+<atomProperties index="57" x="-0.019648" y="0.397086" z="0.161023"/>
+</atom>
+<atom>
+<atomProperties index="58" x="-0.0224549" y="0.395211" z="0.158228"/>
+</atom>
+<atom>
+<atomProperties index="59" x="-0.0252617" y="0.393137" z="0.154692"/>
+</atom>
+<atom>
+<atomProperties index="60" x="-0.05115" y="0.4212" z="0.1431"/>
+</atom>
+<atom>
+<atomProperties index="61" x="-0.0601263" y="0.416853" z="0.130282"/>
+</atom>
+<atom>
+<atomProperties index="62" x="-0.04395" y="0.4107" z="0.147"/>
+</atom>
+<atom>
+<atomProperties index="63" x="-0.0542712" y="0.40728" z="0.136547"/>
+</atom>
+<atom>
+<atomProperties index="64" x="-0.0477" y="0.3912" z="0.140553"/>
+</atom>
+<atom>
+<atomProperties index="65" x="0.05085" y="0.4215" z="0.14304"/>
+</atom>
+<atom>
+<atomProperties index="66" x="0.05655" y="0.41973" z="0.13614"/>
+</atom>
+<atom>
+<atomProperties index="67" x="0.05115" y="0.4095" z="0.14034"/>
+</atom>
+<atom>
+<atomProperties index="68" x="0.0423441" y="0.417066" z="0.147644"/>
+</atom>
+<atom>
+<atomProperties index="69" x="-0.0328707" y="0.400248" z="0.150119"/>
+</atom>
+<atom>
+<atomProperties index="70" x="0.0322707" y="0.400248" z="0.150119"/>
+</atom>
+<atom>
+<atomProperties index="71" x="0.00842058" y="0.402305" z="0.167664"/>
+</atom>
+<atom>
+<atomProperties index="72" x="0.0112274" y="0.401419" z="0.166994"/>
+</atom>
+<atom>
+<atomProperties index="73" x="0.0168412" y="0.398757" z="0.16436"/>
+</atom>
+<atom>
+<atomProperties index="74" x="-0.036012" y="0.387198" z="0.149908"/>
+</atom>
+<atom>
+<atomProperties index="75" x="0.0385596" y="0.391057" z="0.148513"/>
+</atom>
+<atom>
+<atomProperties index="76" x="-0.0325974" y="0.401331" z="0.149383"/>
+</atom>
+<atom>
+<atomProperties index="77" x="0.0315474" y="0.401331" z="0.149383"/>
+</atom>
+<atom>
+<atomProperties index="78" x="0.0300216" y="0.390774" z="0.142203"/>
+</atom>
+<atom>
+<atomProperties index="79" x="-0.0300216" y="0.390774" z="0.142203"/>
+</atom>
+<atom>
+<atomProperties index="80" x="-0.035749" y="0.388152" z="0.148054"/>
+</atom>
+<atom>
+<atomProperties index="81" x="0.0377399" y="0.392282" z="0.147801"/>
+</atom>
+<atom>
+<atomProperties index="82" x="0.0236836" y="0.352627" z="0.138072"/>
+</atom>
+<atom>
+<atomProperties index="83" x="-0.0467832" y="0.380037" z="0.105252"/>
+</atom>
+<atom>
+<atomProperties index="84" x="0.0465" y="0.380037" z="0.105252"/>
+</atom>
+<atom>
+<atomProperties index="85" x="0.0258822" y="0.575376" z="0.0389451"/>
+</atom>
+<atom>
+<atomProperties index="86" x="0.0616434" y="0.441399" z="0.12675"/>
+</atom>
+<atom>
+<atomProperties index="87" x="0.0631005" y="0.448329" z="0.124361"/>
+</atom>
+<atom>
+<atomProperties index="88" x="-0.0210402" y="0.497745" z="0.153781"/>
+</atom>
+<atom>
+<atomProperties index="89" x="0.0260419" y="0.497994" z="0.152098"/>
+</atom>
+<atom>
+<atomProperties index="90" x="-0.026628" y="0.504639" z="0.151177"/>
+</atom>
+<atom>
+<atomProperties index="91" x="0.0369912" y="0.502692" z="0.146931"/>
+</atom>
+<atom>
+<atomProperties index="92" x="0.00205727" y="0.573687" z="0.108119"/>
+</atom>
+<atom>
+<atomProperties index="93" x="-0.000525" y="0.577248" z="0.102"/>
+</atom>
+<atom>
+<atomProperties index="94" x="0.00684327" y="0.577263" z="0.0979377"/>
+</atom>
+<atom>
+<atomProperties index="95" x="0.0262839" y="0.575793" z="0.0431535"/>
+</atom>
+<atom>
+<atomProperties index="96" x="0.0263372" y="0.576255" z="0.0488871"/>
+</atom>
+<atom>
+<atomProperties index="97" x="0.0260419" y="0.576762" z="0.0561456"/>
+</atom>
+<atom>
+<atomProperties index="98" x="0.0254987" y="0.577218" z="0.0616404"/>
+</atom>
+<atom>
+<atomProperties index="99" x="0.0247074" y="0.577617" z="0.0653721"/>
+</atom>
+<atom>
+<atomProperties index="100" x="0.0234313" y="0.577962" z="0.0691374"/>
+</atom>
+<atom>
+<atomProperties index="101" x="0.0216703" y="0.578253" z="0.0729363"/>
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+</multiComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/applications/pmltools/CMakeLists.txt b/modeling/applications/pmltools/CMakeLists.txt
new file mode 100644
index 0000000..a3048f2
--- /dev/null
+++ b/modeling/applications/pmltools/CMakeLists.txt
@@ -0,0 +1,67 @@
+# this is the macro to use in all subdirs CMakeLists
+macro(pml_tool)
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} PMLTOOL_NAME)
+
+ parse_arguments(${PMLTOOL_NAME_CMAKE}
+ "" # possible lists
+ "NEEDS_LML" # possible options
+ ${ARGN}
+ )
+
+ # if this extension is enabled, do everything needed
+ # otherwise... do nothing
+ if (PML_TOOLS)
+ gather_headers_and_sources(PMLTOOL_NAME)
+
+ if (${PMLTOOL_NAME_CMAKE}_NEEDS_LML)
+ set(NEEDED_LML_DEPENDENCIES ${LML_DEPENDENCY} ${LMLSCHEMA_DEPENDENCY})
+ set(NEEDED_LML_DEPENDENCY ${LML_DEPENDENCY})
+ endif()
+
+ # check for target name
+ set(PML_TOOLS_TARGET_NAME pml-tool-${PMLTOOL_NAME})
+
+ include_directories(${CAMITK_INCLUDE_DIR}/libraries)
+ link_directories(${CAMITK_LINK_DIRECTORIES})
+ add_executable(${PML_TOOLS_TARGET_NAME} ${PMLTOOL_NAME_SOURCES})
+ target_link_libraries(${PML_TOOLS_TARGET_NAME} ${PML_DEPENDENCIES} ${NEEDED_LML_DEPENDENCIES}) # pml, pmlschema, lml and lmlschema are all needed at link time
+
+ # target properties
+ set_target_properties(${PML_TOOLS_TARGET_NAME}
+ PROPERTIES OUTPUT_NAME ${PMLTOOL_NAME}
+ )
+ add_dependencies(${PML_TOOLS_TARGET_NAME} ${PML_DEPENDENCY} ${NEEDED_LML_DEPENDENCY}) # pml and lml are needed, lmlschema/pmlschema are not as lml/pml depends on lmlschema already
+
+ # installation
+ install(TARGETS ${PML_TOOLS_TARGET_NAME}
+ RUNTIME DESTINATION bin
+ COMPONENT pml-tools
+ )
+ endif()
+
+endmacro()
+
+# if this is the first run
+if(NOT PML_TOOLS_INTERNAL)
+ message(STATUS "Checking for pml tools")
+ # add option to enable/disable this pml tools
+ set(PML_TOOLS FALSE CACHE BOOL "Build all pml tools")
+ set(PML_TOOLS_INTERNAL TRUE CACHE INTERNAL "Is PML_TOOLS already created?")
+ mark_as_advanced(PML_TOOLS_INTERNAL)
+endif()
+
+# select possible tools
+include_directories( ${PML_INCLUDE_DIRECTORIES})
+set(PMLTOOLS_SOURCE_DIR ${PML_SOURCE_DIR}/tools)
+
+# use CamiTK macro to detect the subdirectories
+# find components
+get_subdirectories(PMLTOOLS_LIST)
+
+message(STATUS "Building pml tools: ${PML_TOOLS}")
+
+# --- add every given/valid tools
+# using the FOREACH statement allows the case where tools_SUBDIRS is empty!
+foreach(PMLTOOL_NAME ${PMLTOOLS_LIST})
+ add_subdirectory(${PMLTOOL_NAME})
+endforeach()
\ No newline at end of file
diff --git a/modeling/libraries/pml/tools/ansys2pml/CMakeLists.txt b/modeling/applications/pmltools/ansys2pml/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/ansys2pml/CMakeLists.txt
rename to modeling/applications/pmltools/ansys2pml/CMakeLists.txt
diff --git a/modeling/applications/pmltools/ansys2pml/ansys2pml.cpp b/modeling/applications/pmltools/ansys2pml/ansys2pml.cpp
new file mode 100644
index 0000000..926babc
--- /dev/null
+++ b/modeling/applications/pmltools/ansys2pml/ansys2pml.cpp
@@ -0,0 +1,380 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+
+#include "programarg.h"
+
+// global parameters (command line arguments)
+string outputPML;
+vector <string> nodeFileNames;
+vector <string> elemFileNames;
+StructureProperties::GeometricType type;
+
+// maps to get the correspondance between atom id and node file id
+namespace std {
+typedef std::pair<unsigned int, Atom *> AtomIndexPair;
+typedef map <unsigned int, Atom *> AtomIndexMap;
+typedef map <unsigned int, Atom *> ::iterator AtomIndexMapIterator;
+}
+
+// one map for each node file
+vector <AtomIndexMap> maps;
+
+// the input node.txt file
+class InputFile {
+public:
+ string fileName;
+ std::ifstream stream;
+ unsigned lineNr;
+ bool eof;
+ unsigned int id;
+
+ InputFile(string f, unsigned int index) : fileName(f), id(index) {
+ open();
+ };
+
+ ~InputFile() {
+ stream.close();
+ }
+
+ void init() {
+ eof = false;
+ lineNr = 0;
+ }
+
+ void open() {
+ stream.open(fileName.c_str());
+ if (!stream.is_open()) {
+ cerr << "Error: cannot open file " << fileName << endl;
+ exit(1);
+ }
+ init();
+ }
+};
+
+// a node file line
+// NUM X Y Z, where NUM is the node number
+typedef struct {
+ int id;
+ double pos[3];
+} NodeLine;
+
+NodeLine currentNodeLine;
+
+// an elem file line
+/* read two lines
+ * For tetrahedron : node id are 1,2,3 and 5
+ * Elem Id is the last nr of the second lines
+ */
+typedef struct {
+ int node[4];
+ int type;
+ int id;
+} TetraElemLine;
+
+TetraElemLine currentElemLine;
+
+// -------------------- getNextNode ------------------------
+void getNextNode(InputFile & nodes) {
+ char l[200];
+
+ if (!nodes.eof) {
+ // read the next line
+ nodes.eof = !(nodes.stream.getline(l,199));
+ nodes.lineNr++;
+ // analyze
+ stringstream line(l);
+ // if the node id is found
+ if ((line >> currentNodeLine.id)) {
+ for (unsigned int i=0; i<3; i++) {
+ if (!(line >> currentNodeLine.pos[i])) {
+ cerr << "Error in " << nodes.fileName << " line " << nodes.lineNr << " node #" << currentNodeLine.id << ": cannot find coordinate " << i+1 << " (set to 0.0)" << endl;
+ currentNodeLine.pos[i] = 0.0;
+ }
+ }
+ }
+ }
+}
+
+// -------------------- getNextElem ------------------------
+void getNextElem(InputFile & elems) {
+ char l[200];
+ int data[14];
+
+ if (!elems.eof) {
+ // read the first line
+ elems.eof = !(elems.stream.getline(l,199));
+ elems.lineNr++;
+ stringstream line2(l);
+ for (unsigned int i=0; i<14; i++)
+ line2 >> data[i];
+
+ // mat is the 10th value
+ currentElemLine.type = data[9];
+
+ if (type==StructureProperties::TETRAHEDRON || currentElemLine.type==2) {
+ // node id is the 1st,2nd,3rd and 5th integer
+ currentElemLine.node[0] = data[0];
+ currentElemLine.node[1] = data[1];
+ currentElemLine.node[2] = data[2];
+ currentElemLine.node[3] = data[4];
+ }
+ if (type==StructureProperties::QUAD) {
+ // node id are 6th, 7th, 8th and 9th integer
+ currentElemLine.node[0] = data[6];
+ currentElemLine.node[1] = data[7];
+ currentElemLine.node[2] = data[8];
+ currentElemLine.node[3] = data[9];
+ }
+
+ // elem id is the last data
+ currentElemLine.id = data[13];
+
+ // read the second line, no data there
+ if (type==StructureProperties::TETRAHEDRON) {
+ elems.eof = !(elems.stream.getline(l,199));
+ elems.lineNr++;
+ }
+ }
+}
+
+// -------------------- nodesToAtoms ------------------------
+StructuralComponent * nodesToAtoms(StructuralComponent * atoms, unsigned int * atomIndex, InputFile & nodes) {
+ // create a new map
+ AtomIndexMap m;
+
+ // create the corresponding SC
+ StructuralComponent * nodeSC = new StructuralComponent(NULL, nodes.fileName);
+
+ cout << nodes.fileName << "=> atom #" << *atomIndex;
+ // go to the first node line
+ getNextNode(nodes);
+
+ do {
+ // currentNodeLine.id becomes atomIndex
+ Atom *a = new Atom(NULL, (*atomIndex), currentNodeLine.pos);
+ atoms->addStructure(a);
+ (*atomIndex)++;
+
+ // add the atom to the SC
+ nodeSC->addStructure(a);
+
+ // add the local index
+ m.insert(AtomIndexPair(currentNodeLine.id, a));
+
+ // next one!
+ getNextNode(nodes);
+ } while (!nodes.eof);
+
+ cout << " to atom #" << (*atomIndex)-1 << endl;
+
+ // add the map to the list
+ maps.push_back(m);
+
+ return nodeSC;
+}
+
+
+// -------------------- elemToSC ------------------------
+StructuralComponent * elemToSC(StructuralComponent * elemSC, InputFile & elems) {
+ StructuralComponent * infoSC = new StructuralComponent(NULL, elems.fileName + " elements");
+ Cell *c;
+
+ // go to the first elem directive
+ getNextElem(elems);
+
+ // process f directives
+ do {
+ if (type==StructureProperties::TETRAHEDRON || currentElemLine.type==2) {
+ // create tetrahedron cell
+ c = new Cell(NULL, StructureProperties::TETRAHEDRON, currentElemLine.id);
+
+ if (c!=NULL) {
+ // add atoms
+ for (unsigned int i=0; i<4; i++) {
+ // get the atom from the corresponding map
+ AtomIndexMapIterator mapIt;
+ mapIt = maps[elems.id].find(currentElemLine.node[i]);
+ Atom *a = (mapIt == maps[elems.id].end()) ? NULL : mapIt->second;
+
+ if (a!=NULL)
+ c->addStructure(a);
+ else
+ cerr << "Error in " << elems.fileName << ", line " << elems.lineNr << ": cannot find atom #" << currentElemLine.node[i] << endl;
+ }
+
+ // add the cell to the informative and exclusive component
+ elemSC->addStructure(c);
+ infoSC->addStructure(c);
+ }
+ } else if (type==StructureProperties::QUAD) {
+ // create quad cell
+ c = new Cell(NULL, StructureProperties::QUAD, currentElemLine.id);
+
+ if (c!=NULL) {
+ // add atoms
+ for (unsigned int i=0; i<4; i++) {
+ // get the atom from the corresponding map
+ AtomIndexMapIterator mapIt;
+ mapIt = maps[elems.id].find(currentElemLine.node[i]);
+ Atom *a = (mapIt == maps[elems.id].end()) ? NULL : mapIt->second;
+
+ if (a!=NULL)
+ c->addStructure(a);
+ else
+ cerr << "Error in " << elems.fileName << ", line " << elems.lineNr << ": cannot find atom #" << currentElemLine.node[i] << endl;
+ }
+
+ // add the cell to the informative and exclusive component
+ elemSC->addStructure(c);
+ infoSC->addStructure(c);
+ }
+ } else {
+ cerr << "Warning in " << elems.fileName << ", line " << elems.lineNr << ": type is unknown (" << currentElemLine.type << ")" << endl;
+ }
+
+ // go to the next directive
+ getNextElem(elems);
+ } while (!elems.eof);
+
+ cout << elems.fileName << " => " << infoSC->getNumberOfStructures() << " elements" << endl;
+ return infoSC;
+}
+
+// -------------------- processArg ------------------------
+void processArg() {
+
+ if (argVal["-n"]=="none") {
+ cerr << "Argument error: -n is mandatory" << usage << endl;
+ exit(-1);
+ }
+
+ stringstream nodeNames(argVal["-n"]);
+ char line[200];
+ bool eof=false;
+ while (!eof) {
+ eof = !(nodeNames.getline(line,199,','));
+ if (line[0]!='\0')
+ nodeFileNames.push_back(line);
+ }
+
+ stringstream elemNames(argVal["-e"]);
+ if (argVal["-e"]!="none") {
+ eof=false;
+ while (!eof) {
+ eof = !(elemNames.getline(line,199,','));
+ if (line[0]!='\0')
+ elemFileNames.push_back(line);
+ }
+ if (elemFileNames.size()!=nodeFileNames.size()) {
+ cerr << "Warning: the number of element files (" << elemFileNames.size() << " and node files (" << nodeFileNames.size() << " are differents" << endl;
+ }
+ }
+
+ outputPML = argVal["-o"];
+
+ type = StructureProperties::toType(argVal["-t"]);
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "ansys2pml generating " << outputPML << " from node files ";
+ for (unsigned int i=0; i<nodeFileNames.size(); i++) {
+ cout << nodeFileNames[i];
+ if (i!=nodeFileNames.size()-1)
+ cout << ",";
+ }
+ cout << " and elem files ";
+ for (unsigned int i=0; i<elemFileNames.size(); i++) {
+ cout << elemFileNames[i];
+ if (i!=elemFileNames.size()-1)
+ cout << ",";
+ }
+ cout << endl;
+ cout << "Elements are of type " << StructureProperties::toString(type) << endl;
+ cout << endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+
+ processArg();
+ printArg();
+
+ try {
+
+ // create a new physical model
+ PhysicalModel * pm = new PhysicalModel();
+ pm->setName("PML for " + argVal["-n"]);
+ pm->setInformativeComponents(new MultiComponent(NULL, "Informative Components"));
+
+ // create the new atom SC
+ StructuralComponent * atoms = new StructuralComponent(NULL, "Atoms");
+ // very important: start at 1 to have the same index system
+ unsigned int atomIndex=1;
+
+ // open the node files
+ for (unsigned int i=0; i<nodeFileNames.size(); i++) {
+ InputFile nodes(nodeFileNames[i],i);
+ StructuralComponent *nodeSC = nodesToAtoms(atoms,&atomIndex,nodes);
+ // add the nodeSC to the pml
+ pm->getInformativeComponents()->addSubComponent(nodeSC);
+ }
+ // add the atom list to the pml
+ pm->setAtoms(atoms);
+
+ // create the new element SC
+ StructuralComponent * elemSC = new StructuralComponent(NULL, "Elements");
+
+ // open the elem files
+ for (unsigned int i=0; i<elemFileNames.size(); i++) {
+ InputFile elems(elemFileNames[i],i);
+ StructuralComponent * yetAnotherSC = elemToSC(elemSC, elems);
+ // add the yetAnotherSC to the pml
+ pm->getInformativeComponents()->addSubComponent(yetAnotherSC);
+ }
+ // add the element list to the pml
+ pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
+ pm->getExclusiveComponents()->addSubComponent(elemSC);
+
+ // save the result in the pml file
+ ofstream outputFile(outputPML.c_str());
+ pm->xmlPrint(outputFile);
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/applications/pmltools/ansys2pml/programarg.h b/modeling/applications/pmltools/ansys2pml/programarg.h
new file mode 100644
index 0000000..7bdbe11
--- /dev/null
+++ b/modeling/applications/pmltools/ansys2pml/programarg.h
@@ -0,0 +1,99 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+/**
+ * @ingroup group_cepmodeling_libraries_pml
+ *
+ * @brief
+ * TODO Comment class here.
+ *
+ **/
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for(unsigned int i=0; i<sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for(int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if(equal == string::npos) {
+ std::cerr << "Command line error: " << argv[i] << std::endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if(find(name) == end()) {
+ std::cerr << name << std::endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << std::endl;
+ for(iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << std::endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-n", "none" },
+ { "-e", "none" },
+ { "-t", "none" },
+ { "-o", "ansys2pml-output.pml" },
+};
+
+const char* usage = "usage:\n"
+ "ansys2pml -n=nodes1.txt,..,nodesN.txt [-e=elem1.txt,..elemN.txt] [-t=ELEM_TYPE] [-o=output]\n"
+ "Transform nodes and elements ANSYS files to a PML\n"
+ "To produce a correct PML, the file are to be ordered the same way they were exported in ANSYS\n"
+ "(Note no space around '=')\n"
+ "Where the flags can be any of: \n"
+ " -n input node files separated by a comma\n"
+ " -e input element files separated by a comma\n"
+ " -t element type (see below)\n"
+ " -o output PML file name\n"
+ "\n"
+ "Element type defines the element geometry:\n"
+ "- TETRAHEDRON elements are tetrahedron, node index are integer #1, #2, #3 and #5 for each element file line\n"
+ "- QUAD elements are 2D quads, node index are integer #1, #2, #3 and #4 (I,J,K,L) for each element file line\n"
+ ;
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+
diff --git a/modeling/libraries/pml/tools/bash-scripts/README b/modeling/applications/pmltools/bash-scripts/README
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/README
rename to modeling/applications/pmltools/bash-scripts/README
diff --git a/modeling/libraries/pml/tools/bash-scripts/all-on-one-line.sed b/modeling/applications/pmltools/bash-scripts/all-on-one-line.sed
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/all-on-one-line.sed
rename to modeling/applications/pmltools/bash-scripts/all-on-one-line.sed
diff --git a/modeling/libraries/pml/tools/bash-scripts/ansysComponent2csv.bash b/modeling/applications/pmltools/bash-scripts/ansysComponent2csv.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/ansysComponent2csv.bash
rename to modeling/applications/pmltools/bash-scripts/ansysComponent2csv.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/atomscsv2atomspml.bash b/modeling/applications/pmltools/bash-scripts/atomscsv2atomspml.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/atomscsv2atomspml.bash
rename to modeling/applications/pmltools/bash-scripts/atomscsv2atomspml.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/atomspml2atomscsv.bash b/modeling/applications/pmltools/bash-scripts/atomspml2atomscsv.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/atomspml2atomscsv.bash
rename to modeling/applications/pmltools/bash-scripts/atomspml2atomscsv.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/cutInBits.bash b/modeling/applications/pmltools/bash-scripts/cutInBits.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/cutInBits.bash
rename to modeling/applications/pmltools/bash-scripts/cutInBits.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/extractSC.bash b/modeling/applications/pmltools/bash-scripts/extractSC.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/extractSC.bash
rename to modeling/applications/pmltools/bash-scripts/extractSC.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/incr_num.sed b/modeling/applications/pmltools/bash-scripts/incr_num.sed
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/incr_num.sed
rename to modeling/applications/pmltools/bash-scripts/incr_num.sed
diff --git a/modeling/libraries/pml/tools/bash-scripts/node2cell.bash b/modeling/applications/pmltools/bash-scripts/node2cell.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/node2cell.bash
rename to modeling/applications/pmltools/bash-scripts/node2cell.bash
diff --git a/modeling/libraries/pml/tools/bash-scripts/removeCellIndex.bash b/modeling/applications/pmltools/bash-scripts/removeCellIndex.bash
similarity index 100%
rename from modeling/libraries/pml/tools/bash-scripts/removeCellIndex.bash
rename to modeling/applications/pmltools/bash-scripts/removeCellIndex.bash
diff --git a/modeling/libraries/pml/tools/elementsToNeighborhood/CMakeLists.txt b/modeling/applications/pmltools/elementsToNeighborhood/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/elementsToNeighborhood/CMakeLists.txt
rename to modeling/applications/pmltools/elementsToNeighborhood/CMakeLists.txt
diff --git a/modeling/applications/pmltools/elementsToNeighborhood/elementsToNeighborhood.cpp b/modeling/applications/pmltools/elementsToNeighborhood/elementsToNeighborhood.cpp
new file mode 100644
index 0000000..682eeec
--- /dev/null
+++ b/modeling/applications/pmltools/elementsToNeighborhood/elementsToNeighborhood.cpp
@@ -0,0 +1,700 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+
+/// class facet to old and compare facet
+class Facet {
+public:
+ /// create a facet using size nodes and their indexes
+ Facet(unsigned int size, unsigned int id[]);
+
+ /// destructor
+ virtual ~Facet();
+
+ /// if it is the same (equivalent) facet, increment used (return true if equivalence)
+ bool testEquivalence(unsigned int size, unsigned int id[]);
+
+ /// return the corresponding PML cell
+ Cell * getCell(PhysicalModel *) const;
+
+ /// print on stdout
+ void debug();
+
+ /// get the number of time it is being used
+ unsigned int getUsed() const;
+
+private:
+ /// is this atom index present in this facet (no check on the order)
+ bool isIn(unsigned int) const;
+
+ /// the facet atom indexes
+ unsigned int *id;
+
+ /// nr of atoms composing the facet (3 = triangle, 4 = quad)
+ unsigned int size;
+
+ /// nr of times the facet is used
+ unsigned int used;
+};
+
+
+// -------------------- constructor/destructor ------------------------
+Facet::Facet(unsigned int size, unsigned int id[]) {
+ this->size = size;
+ this->id = new unsigned int[size];
+ for (unsigned int i=0; i<size; i++)
+ this->id[i]=id[i];
+ used = 1;
+}
+
+Facet::~Facet() {
+ delete [] id;
+}
+
+// -------------------- debug ------------------------
+void Facet::debug() {
+ switch (size) {
+ case 3:
+ cout << "triangle <";
+ break;
+ case 4:
+ cout << "quad <";
+ break;
+ default:
+ cout << "unknown facet <";
+ break;
+ }
+ unsigned int i;
+ for (i=0; i<size-1; i++)
+ cout << id[i] << ",";
+ cout << id[i] << "> used " << used << " times" << endl;
+}
+
+
+// -------------------- testEquivalence ------------------------
+bool Facet::testEquivalence(unsigned int size, unsigned int id[]) {
+ if (this->size != size) {
+ return false;
+ } else {
+ unsigned int i=0;
+ while (i<size && isIn(id[i])) {
+ i++;
+ }
+
+ if (i==size)
+ used++;
+
+ return (i==size);
+ }
+}
+
+// -------------------- isIn ------------------------
+bool Facet::isIn(unsigned int index) const {
+ unsigned int i=0;
+ while (i<size && id[i]!=index)
+ i++;
+ return (i!=size);
+}
+
+// -------------------- getCell ------------------------
+Cell * Facet::getCell(PhysicalModel *pm) const {
+ Cell *c;
+ // create the correct geometric type cell
+ switch (size) {
+ case 3:
+ c = new Cell(NULL, StructureProperties::TRIANGLE);
+ break;
+ case 4:
+ c = new Cell(NULL, StructureProperties::QUAD);
+ break;
+ default:
+ c=NULL;
+ }
+ // get the atom corresponding to the index stored in id
+ // and insert them in the cell
+ for (unsigned int i=0; i<size; i++) {
+ Atom *a = pm->getAtom(id[i]);
+ if (a==NULL) {
+ cout << "Argh! Cannot find atom #" << id[i] << endl;
+ } else {
+ c->addStructureIfNotIn(a);
+ }
+ }
+ return c;
+}
+
+// -------------------- getUsed ------------------------
+unsigned int Facet::getUsed() const {
+ return used;
+}
+
+// -------------------- Neigborhood Map ------------------------
+// associative map of all the neighboors for a given index of an atom
+map<unsigned int, Cell*> neighMap;
+
+// -------------------- getIterator ------------------------
+// get the iterator on the correct atom index in the neighMap
+// if non existant create it
+map<unsigned int, Cell*>::iterator getIterator(unsigned int index) {
+ map<unsigned int, Cell*>::iterator it;
+
+ // find atom index in the map
+ it = neighMap.find(index);
+
+ // not present, insert a new cell, associated with index
+ if (it==neighMap.end()) {
+ // instanciate
+ Cell *nc = new Cell(NULL, StructureProperties::POLY_VERTEX);
+ // name
+ stringstream n(std::stringstream::out);
+ n << "Atom #" << index << '\0';
+ ((Structure *)nc)->setName(n.str());
+ // insert the new cell in the map
+ pair<map<unsigned int, Cell*>::iterator, bool> ins = neighMap.insert(map<unsigned int, Cell*>::value_type(index, nc));
+ // it show where it has been inserted
+ it = ins.first;
+ }
+
+ return it;
+}
+
+// -------------------- generateNeighborhood ------------------------
+/// generate the neighborhoods
+StructuralComponent * generateNeighborhood(StructuralComponent *sc) {
+ // an iterator
+ map<unsigned int, Cell*>::iterator it;
+
+ // for each cells recreate neighborhoods
+ for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
+ // c is an hexahedron
+ Cell *c = sc->getCell(i);
+
+ switch(c->getType()) {
+ case StructureProperties::TRIANGLE:
+ if (c->getNumberOfStructures()!=3) {
+ cout << "cell #" << c->getIndex() << " of type TRIANGLE does not contains 3 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // TRIANGLE
+ // 1 facet: lines:
+ // / \ 0,1,2 0,1
+ // / \ 1,2
+ // 2-----0 2,0
+
+ // -- add atom 0 neighbors
+ // get neighbors list for atom 0
+ it = getIterator(c->getStructure(0)->getIndex());
+ // it.second is the cell containing all the atoms that are neighbors of atom 0
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+
+ // -- add atom 1 neighbors
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ // -- add atom 2 neighbors
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ }
+ break;
+ case StructureProperties::QUAD:
+ if (c->getNumberOfStructures()!=4) {
+ cout << "cell #" << c->getIndex() << " of type QUAD does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // QUAD
+ // 3--------2 lines:
+ // | | 0,1
+ // | | 1,2
+ // | | 2,3
+ // 0--------1 3,0
+
+ // -- add atom 0 neighbors
+ // get neighbors list for atom 0
+ it = getIterator(c->getStructure(0)->getIndex());
+ // it.second is the cell containing all the atoms that are neighbors of atom 0
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+
+ // -- add atom 1 neighbors
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ // -- add atom 2 neighbors
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+
+ // -- add atom 3 neighbors
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ }
+ break;
+ case StructureProperties::WEDGE:
+ if (c->getNumberOfStructures()!=6) {
+ cout << "cell #" << c->getIndex() << " of type WEDGE does not contains 6 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // WEDGE
+ // 1-------------4 facets (quad): facets (triangles): lines:
+ // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
+ // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
+ // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
+ // \ \ \ \ 0,3 5,3
+ // \ 2-----------\--5 1,4
+ it = getIterator(c->getStructure(0)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ it = getIterator(c->getStructure(4)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+
+ it = getIterator(c->getStructure(5)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ }
+ break;
+
+ case StructureProperties::TETRAHEDRON:
+ if (c->getNumberOfStructures()!=4) {
+ cout << "cell #" << c->getIndex() << " of type TETRAHEDRON does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // tetrahedron are defined as follow:
+ // 3 triangular base: 0,1,2
+ // /| \ -
+ // / | \ So to generate the neighborhodd,
+ // 2__|___\1 we just have to loop on all the
+ // \ | / atoms and add them their corresponding neigh
+ // \ | / This is easy as in a tetrahedron all atoms
+ // \|/ are neighbors to all atoms...
+ // 0
+ for (unsigned int j=0; j<4; j++) {
+ // get current atom
+ it = getIterator(c->getStructure(j)->getIndex());
+ // add all others to its neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure((j+1)%4));
+ (*it).second->addStructureIfNotIn(c->getStructure((j+2)%4));
+ (*it).second->addStructureIfNotIn(c->getStructure((j+3)%4));
+ }
+ }
+ break;
+
+ case StructureProperties::HEXAHEDRON:
+ if (c->getNumberOfStructures()!=8) {
+ cout << "cell #" << c->getIndex() << " of type HEXAHEDRON does not contains 8 atoms (found only " << c->getNumberOfStructures() << "). Cell skiped." << endl;
+ } else {
+ // hexahedron are defined as follow:
+ // 2-------------6
+ // / \ / \ So to generate the neighborhood,
+ // / \ / \ we just have to loop on all the
+ // 1-----\-------5 \ atoms and add them their corresponding neigh
+ // \ 3-------------7
+ // \ / \ /
+ // \ / \ /
+ // 0-------------4
+
+ // atom 0 is neigbor of atoms : 1, 3, 4
+ it = getIterator(c->getStructure(0)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+
+ // atom 1 is neigbor of atoms : 0, 2, 5
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+
+ // atom 2 is neigbor of atoms : 1, 3, 6
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+
+ // atom 3 is neigbor of atoms : 0, 2, 7
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 4 is neigbor of atoms : 0, 5, 7
+ it = getIterator(c->getStructure(4)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 5 is neigbor of atoms : 1, 4, 6
+ it = getIterator(c->getStructure(5)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+
+ // atom 6 is neigbor of atoms : 2, 5, 7
+ it = getIterator(c->getStructure(6)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 7 is neigbor of atoms : 3, 4, 6
+ it = getIterator(c->getStructure(7)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+ }
+ break;
+ default:
+ cout << "Cannot generate neighborhood for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
+ break;
+ }
+ }
+
+ // now that we have in neighMap all the neighborhoods, just add them in a new SC
+ StructuralComponent *neigh = new StructuralComponent(NULL, "Neighborhoods");
+
+ for (it=neighMap.begin(); it!=neighMap.end(); it++) {
+ neigh->addStructure((*it).second);
+ }
+
+ return neigh;
+}
+
+// -------------------- All border facets ------------------------
+/// storing all the facets
+vector <Facet *> allFacets;
+
+// -------------------- equivalent ------------------------
+// check if equivalent of already existing facet
+void equivalent(int size, unsigned int id[]) {
+ vector <Facet *>::iterator it;
+
+ // look into allFacets for equivalence
+ it = allFacets.begin();
+ while (it!=allFacets.end() && !(*it)->testEquivalence(size, id))
+ it++;
+
+ // not found => insert
+ if (it==allFacets.end())
+ allFacets.push_back(new Facet(size,id));
+}
+
+
+// -------------------- generateExternalSurface ------------------------
+/// generate the outside surface
+MultiComponent * generateExternalSurface(StructuralComponent *sc) {
+ // outside/external facets are facets that are used in only one element
+
+ // for each cells update the counter
+ for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
+ // c is an hexahedron
+ Cell *c = sc->getCell(i);
+
+ // Facets have to be described in anticlockwise (trigonometrywise) when
+ // looking at them from outside
+ switch(c->getType()) {
+ case StructureProperties::TRIANGLE: {
+ // TRIANGLE (as viewed from outside)
+ // 1 facet: lines:
+ // / \ 0,1,2 0,1
+ // / \ 1,2
+ // 2-----0 2,0
+ unsigned idT[3];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(1)->getIndex();
+ idT[2]=c->getStructure(2)->getIndex();
+ equivalent(3,idT);
+ break;
+ }
+ case StructureProperties::QUAD: {
+ // QUAD
+ // 3--------2 lines:
+ // | | 0,1
+ // | | 1,2
+ // | | 2,3
+ // 0--------1 3,0
+
+ unsigned idT[4];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(1)->getIndex();
+ idT[2]=c->getStructure(2)->getIndex();
+ idT[3]=c->getStructure(3)->getIndex();
+ equivalent(4,idT);
+ break;
+ }
+ case StructureProperties::WEDGE: {
+ // WEDGE
+ // 1-------------4 facets (quad): facets (triangles): lines:
+ // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
+ // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
+ // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
+ // \ \ \ \ 0,3 5,3
+ // \ 2-----------\--5 1,4
+ unsigned int idQ[4];
+ idQ[0]=c->getStructure(2)->getIndex();
+ idQ[1]=c->getStructure(5)->getIndex();
+ idQ[2]=c->getStructure(4)->getIndex();
+ idQ[3]=c->getStructure(1)->getIndex();
+ equivalent(4,idQ);
+
+ idQ[0]=c->getStructure(0)->getIndex();
+ idQ[1]=c->getStructure(1)->getIndex();
+ idQ[2]=c->getStructure(4)->getIndex();
+ idQ[3]=c->getStructure(3)->getIndex();
+ equivalent(4,idQ);
+
+ idQ[0]=c->getStructure(2)->getIndex();
+ idQ[1]=c->getStructure(0)->getIndex();
+ idQ[2]=c->getStructure(3)->getIndex();
+ idQ[3]=c->getStructure(5)->getIndex();
+ equivalent(4,idQ);
+
+ unsigned int idT[3];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(2)->getIndex();
+ idT[2]=c->getStructure(1)->getIndex();
+ equivalent(3,idT);
+
+ idT[0]=c->getStructure(3)->getIndex();
+ idT[1]=c->getStructure(4)->getIndex();
+ idT[2]=c->getStructure(5)->getIndex();
+ equivalent(3,idT);
+ break;
+ }
+ case StructureProperties::TETRAHEDRON: {
+ // tetrahedron are defined as follow:
+ // 3
+ // /| \ So to generate the facet list,
+ // / | \ we just have to loop on all the
+ // 1__|___\ 2 tetrahedron and add the corresponding 4 facets :
+ // \ | / f0=0,1,2 f2=0,3,1
+ // \ | / f1=0,2,3 f3=2,1,3
+ // \|/
+ // 0
+ unsigned int id[3];
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(2)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(2)->getIndex();
+ id[2]=c->getStructure(3)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(3)->getIndex();
+ id[2]=c->getStructure(1)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(2)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(3)->getIndex();
+ equivalent(3,id);
+ break;
+ }
+
+ case StructureProperties::HEXAHEDRON: {
+ // hexahedron are defined as follow:
+ // 2-------------6
+ // / \ . \ So to generate the facet list,
+ // / \ / \ we just have to loop on all the
+ // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
+ // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
+ // \ / \ / f1=0,4,7,3 f4=1,2,6,5
+ // \ / . / f2=0,1,5,4 f5=4,5,6,7
+ // 0-------------4
+
+ unsigned int id[4];
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(3)->getIndex();
+ id[2]=c->getStructure(2)->getIndex();
+ id[3]=c->getStructure(1)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(4)->getIndex();
+ id[2]=c->getStructure(7)->getIndex();
+ id[3]=c->getStructure(3)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(5)->getIndex();
+ id[3]=c->getStructure(4)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(3)->getIndex();
+ id[1]=c->getStructure(7)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(2)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(1)->getIndex();
+ id[1]=c->getStructure(2)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(5)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(4)->getIndex();
+ id[1]=c->getStructure(5)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(7)->getIndex();
+ equivalent(4,id);
+ break;
+ }
+ default:
+ cout << "Cannot generate sub facets for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
+ break;
+ }
+ }
+
+ // now that we have in facetMap all the facet and the number of times they have been used
+ // just add in a new SC all the one that are used only once
+ StructuralComponent *facet = new StructuralComponent(NULL, "extern");
+
+ for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++) {
+ //(*it)->debug();
+ if ((*it)->getUsed()==1) // used only once
+ facet->addStructure((*it)->getCell(sc->getPhysicalModel()));
+ }
+
+ // delete all facets
+ for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++)
+ delete (*it);
+
+ // create the enclosed volume
+ MultiComponent *mc = new MultiComponent(NULL, "Enclosed Volumes");
+ mc->addSubComponent(facet);
+
+ // return the SC
+ return mc;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=2) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml" << endl;
+ cout << "generates neighborhood and external surface information, output to: file-neighborhood.pml" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ cout << "-> please wait while reading " << filename << " for adding neighborhood/enclosed volumes" << endl;
+ PhysicalModel pm(filename.c_str());
+
+ // find the structural component "Elements" in the exclusive components
+ Component * c = pm.getComponentByName("Elements");
+ if (!c) {
+ throw PMLAbortException("Cannot find any component named \"Elements\"");
+ }
+
+ // check if it is a correct one
+ if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
+ throw PMLAbortException("Cannot translate the \"Elements\" component: not exclusive or not a structural component.");
+ }
+
+ // check if c is made of hexahedron
+ StructuralComponent *sc = (StructuralComponent *) c;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
+ sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON &&
+ sc->getCell(0)->getType()!=StructureProperties::WEDGE &&
+ sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
+ sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
+ throw PMLAbortException("Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON, WEDGE, TRIANGLE, QUAD or TETRAHEDRON. Exiting");
+ }
+
+ // now, we have the right component, let's do some work...
+ cout << "-> please wait while generating neighborhood" << endl;
+ StructuralComponent * neighborhoods = generateNeighborhood(sc);
+ cout << "-> please wait while generating external surface" << endl;
+ MultiComponent * polyhedrons = generateExternalSurface(sc);
+
+ // add the new SC to the informative component
+ if (neighborhoods)
+ pm.getExclusiveComponents()->addSubComponent(neighborhoods);
+ if (polyhedrons)
+ pm.getExclusiveComponents()->addSubComponent(polyhedrons);
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-neighborhood.pml";
+ } else
+ filename="neighborhood.pml";
+
+ cout << "-> please wait while saving result in " << filename << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm.setName(pm.getName()+" neighborhoods");
+ // do not change cell and atom id
+ pm.xmlPrint(outputFile,false);
+
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/elementsToNeighborhood/mef.pml b/modeling/applications/pmltools/elementsToNeighborhood/mef.pml
similarity index 100%
rename from modeling/libraries/pml/tools/elementsToNeighborhood/mef.pml
rename to modeling/applications/pmltools/elementsToNeighborhood/mef.pml
diff --git a/modeling/libraries/pml/tools/extractCells/CMakeLists.txt b/modeling/applications/pmltools/extractCells/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/extractCells/CMakeLists.txt
rename to modeling/applications/pmltools/extractCells/CMakeLists.txt
diff --git a/modeling/applications/pmltools/extractCells/extractCells.cpp b/modeling/applications/pmltools/extractCells/extractCells.cpp
new file mode 100644
index 0000000..e26bf5d
--- /dev/null
+++ b/modeling/applications/pmltools/extractCells/extractCells.cpp
@@ -0,0 +1,193 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+
+bool isIn(StructuralComponent *sc, Atom *a) {
+ unsigned int i=0;
+ bool found=false;
+ while (i<sc->getNumberOfStructures() && !found) {
+ found = (sc->getStructure(i)==a);
+ i++;
+ }
+ return found;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=3 && argc!=4) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml \"c1\" \"c2\"" << endl;
+ cout << "\t\tOnly select cells of component c1 of file.pml where all atoms are also in component c2, output to: file-extracted.pml (c2 is either component of file.pml or a separated csv file)" << endl;
+ cout << "\t" << argv[0] << " file.pml \"c\"" << endl;
+ cout << "\t\tSelect component c of file.pml, output to: component.pml (pseudo pml)" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ cout << "-> please wait while reading " << filename << " for extraction of ";
+ string c1(argv[2]);
+ string c2;
+ if (argc==3) {
+ cout << "component " << c1 << endl;
+ } else if (argc==4) {
+ c2 = argv[3];
+ cout << "all cells in " << c1 << " having all atoms in " << c2 << endl;
+ }
+
+ PhysicalModel * pm = new PhysicalModel(filename.c_str());
+
+ cout << "-> get " << c1 << endl;
+
+ // get the component
+ Component *cpt1 = pm->getComponentByName(c1);
+ if (!cpt1) {
+ throw PMLAbortException("No component named " + c1);
+ }
+
+ if (argc==3) {
+ // save cpt
+ string cptOutName(c1);
+ cptOutName += ".pml";
+ cout << "-> saving " << cptOutName << endl;
+
+ ofstream cptOut(cptOutName.c_str());
+ cpt1->xmlPrint(cptOut);
+ cptOut.close();
+ } else if (argc==4) {
+ cout << "-> get " << c2 << endl;
+
+ // atom list of c2
+ StructuralComponent * atom2;
+ atom2 = new StructuralComponent(NULL);
+
+ // get the cell and build atom2
+ Component *cpt2 = pm->getComponentByName(c2);
+ if (!cpt2) {
+ // try to open a file name c2 as csv
+ cout << "-> cannot find component " << c2 << " trying to open file " << c2 << endl;
+
+ // open the file
+ ifstream atomList(c2.c_str());
+
+ while (!atomList.eof()) {
+ char l[200000];
+ // read the next line
+ if (atomList.getline(l,199999)) {
+ // analyze
+ std::stringstream line(l);
+ unsigned int id;
+ while ((line >> id)) {
+ Atom *a = pm->getAtom(id);
+ if (a)
+ atom2->addStructureIfNotIn(a);
+ }
+ }
+ }
+ if (atom2->getNumberOfStructures()>0) {
+ cout << "-> found " << atom2->getNumberOfStructures() << " atoms in file " << c2 << endl;
+ } else {
+ throw PMLAbortException("Cannot find any atoms in file " + c2);
+ }
+
+ } else {
+ // cpt2 is found, just get all atoms in it
+ for (unsigned int i=0; i<cpt2->getNumberOfCells(); i++) {
+ Cell *c=cpt2->getCell(i);
+ for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
+ atom2->addStructureIfNotIn(c->getStructure(j));
+ }
+ cout << "-> found " << atom2->getNumberOfStructures() << " atoms in component " << c2 << endl;
+ }
+
+ // create the new component
+ StructuralComponent * extracted;
+ extracted = new StructuralComponent(pm, c1 + "/" + c2 +" extracted");
+
+ // create atom list of atoms in cell
+ cout << "-> please wait while extracting from " << c1 << " (" << cpt1->getNumberOfCells() << " cells)..." << endl;
+
+ unsigned int ok=0;
+ // check each cell and all atoms in the cell
+ for (unsigned int i=0; i<cpt1->getNumberOfCells(); i++) {
+ Cell *c = cpt1->getCell(i);
+ unsigned int j=0;
+ bool isOk = true;
+ while (j<c->getNumberOfStructures() && isOk) {
+ isOk = isOk && isIn(atom2, (Atom *)c->getStructure(j));
+ j++;
+ }
+ if (isOk) {
+ ok++;
+ // copy the cell
+ Cell *newCell = new Cell(pm,c->getType());
+ for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
+ newCell->addStructureIfNotIn(c->getStructure(j));
+ extracted->addStructureIfNotIn(newCell);
+ //cout << '\r' << c->Structure::getName() << endl;
+ }
+ cout << '\r' << (i+1) << "/" << ok;
+ }
+ cout << endl << "-> found " << ok << " matching cells, " << cpt1->getNumberOfCells() - ok << " excluded" << endl;
+
+ // add the new SC to the informative component
+ pm->getInformativeComponents()->addSubComponent(extracted);
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-extracted.pml";
+ } else
+ filename="extracted.pml";
+
+ cout << "-> please wait while saving " << filename << " " << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" "+c1+"/"+c2+" Extracted");
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+ }
+
+ delete pm;
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/genatoms/CMakeLists.txt b/modeling/applications/pmltools/genatoms/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/genatoms/CMakeLists.txt
rename to modeling/applications/pmltools/genatoms/CMakeLists.txt
diff --git a/modeling/applications/pmltools/genatoms/genatoms.cpp b/modeling/applications/pmltools/genatoms/genatoms.cpp
new file mode 100644
index 0000000..a58204b
--- /dev/null
+++ b/modeling/applications/pmltools/genatoms/genatoms.cpp
@@ -0,0 +1,137 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+//
+// C++ Implementation: genatoms
+//
+// Description: generate a simple pml containing only the atoms SC using a list of floats
+// in a text file (floats are considered as 3d coordinates xi yi zi)
+//
+// Input: a text file containing
+// x1 y1 z1
+// ...
+// xn yn zn...
+//
+// Output: the pml equivalent with n atoms
+//
+// Exemple of inputs:
+// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
+// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
+// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
+// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
+// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
+//
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <stdlib.h>
+
+using namespace std;
+
+int main(int argc, char ** argv) {
+
+ if (argc<2) {
+ cout << "Usage: " << argv[0] << " position.csv" << endl;
+ exit(-1);
+ }
+ // open the noboite.txt file
+ string filename(argv[1]);
+ ifstream coordList(filename.c_str());
+
+ // save the result in the pml file
+ unsigned int pLast = filename.rfind(".");
+ string basename = filename;
+ if (pLast != string::npos) {
+ basename.erase(pLast);
+ filename = basename + "-out.pml";
+ } else
+ filename += "-out.pml";
+ ofstream outputFile(filename.c_str());
+ outputFile << "<!-- Created by genatoms (c) E Promayon, TIMC (c) 2005 -->" << endl;
+ outputFile << "<physicalModel name=\"" << basename << "\" >" << endl;
+
+ // vertices
+ outputFile << "<atoms>" << endl;
+ outputFile << "<structuralComponent name=\"vertices\">" << endl;
+
+ double x, y, z;
+ unsigned int i=1;
+ while (coordList.good()) {
+ // read position
+ coordList >> x;
+ if (coordList.good())
+ coordList >> y;
+ if (coordList.good()) {
+ coordList >> z;
+ // write atom
+ outputFile << "<atom>" << endl;
+ outputFile << "<atomProperties index=\"" << i << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
+ outputFile << "</atom>" << endl;
+ i++;
+ }
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</atoms>" << endl;
+
+ // regions
+ outputFile << "<exclusiveComponents>" << endl;
+ outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
+ /* outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
+ outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
+ for (unsigned int i=1; i<=nVertices; i++)
+ outputFile << "<atomRef index=\"" << i << "\"/>" << endl;
+ outputFile << "</cell>" << endl;
+ outputFile << "</structuralComponent>" << endl;
+
+ // tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
+ unsigned int nTetra;
+ nobox >> nTetra;
+
+ outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+ outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ int id;
+ for (unsigned int i=0;i<nTetra; i++) {
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties type=\"TETRAHEDRON\" />" << endl;
+ for (unsigned int j=0; j<4; j++) {
+ nobox >> id;
+ outputFile << "<atomRef index=\"" << id << "\" />" << endl;
+ }
+ outputFile << "</cell>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;*/
+ outputFile << "</multiComponent>" << endl;
+ outputFile << "</exclusiveComponents>" << endl;
+ outputFile << "<informativeComponents>" << endl;
+ outputFile << "</informativeComponents>" << endl;
+ outputFile << "</physicalModel>" <<endl;
+
+ outputFile.close();
+
+}
diff --git a/modeling/libraries/pml/tools/gencells/CMakeLists.txt b/modeling/applications/pmltools/gencells/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/gencells/CMakeLists.txt
rename to modeling/applications/pmltools/gencells/CMakeLists.txt
diff --git a/modeling/applications/pmltools/gencells/gencells.cpp b/modeling/applications/pmltools/gencells/gencells.cpp
new file mode 100644
index 0000000..3982809
--- /dev/null
+++ b/modeling/applications/pmltools/gencells/gencells.cpp
@@ -0,0 +1,131 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+//
+// C++ Implementation: gencells
+//
+// Description:
+// if one arguments given: generate on stdout a structural component containing cells using a simple text file where each
+// line describes the atom indexes of a facet.
+// If two arguments given: generate a POLY_VERTEX cell using all atoms indexes between 1st arg and 2nd arg
+//
+// Input: a text file containing
+// ref0 ref1 ref2
+// ref3 ref5 ref4 ref18
+// ...
+//
+// Output: the pml structural component containing the cells
+//
+// Exemple of inputs:
+// 0 9 6
+// 1 0 6
+// 9 0 7
+// 0 3 5 4
+//
+// The output will be a structural component containing 4 cells, the first three cells are triangles, the
+// last one is a quad.
+//
+// Input : two arguments
+// Output : one pml cell containing all atoms between 1st and 2n arg
+//
+// Exemple of intputs:
+// 14 545
+// This will output a cell that uses atomRef 14, atomRef 15, atomRef 16... atomRef 545
+//
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <sstream>
+#include <vector>
+#include <stdlib.h>
+
+using namespace std;
+
+void genFromFile(string filename) {
+ // open the input.txt file
+ ifstream facetList(filename.c_str());
+
+ // output to stdout
+ cout << "<structuralComponent name=\"" << filename << "\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+ cout << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ while (!facetList.eof()) {
+ char l[200000];
+ // read the next line
+ if (facetList.getline(l,199999)) {
+ cout << "<cell>" << endl;
+ // analyze
+ std::stringstream line(l);
+ std::vector<unsigned int> atomRefs;
+ unsigned int id;
+ while ((line >> id)) {
+ atomRefs.push_back(id);
+ }
+ cout << "<cellProperties type=\"";
+ switch (atomRefs.size()) {
+ case 3:
+ cout << "TRIANGLE";
+ break;
+ case 4:
+ cout << "QUAD";
+ break;
+ default:
+ cout << "POLY_VERTEX";
+ break;
+ }
+ cout << "\"/>" << endl;
+ for (unsigned int i=0; i<atomRefs.size(); i++)
+ cout << "<atomRef index=\"" << atomRefs[i] << "\" />" << endl;
+ cout << "</cell>" << endl;
+ }
+ }
+
+ cout << "</structuralComponent>" << endl;
+}
+
+void genFromIndex(unsigned int start, unsigned int end) {
+ // output to stdout
+ cout << "<structuralComponent name=\"GenCell\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+ cout << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+ cout << "<cell>" << endl;
+ cout << "<cellProperties type=\"POLY_VERTEX\"/>" << endl;
+ for (unsigned int i=start; i<=end; i++)
+ cout << "<atomRef index=\"" << i << "\" />" << endl;
+ cout << "</cell>" << endl;
+}
+
+int main(int argc, char ** argv) {
+ if (argc==3) {
+ cout << "<!-- generating cell from indexes: " << argv[1] << " to " << argv[2] << " -->" << endl;
+ genFromIndex(atoi(argv[1]), atoi(argv[2]));
+ } else if (argc==2) {
+ cout << "<!-- generating cell using " << argv[1] << " -->" << endl;
+ genFromFile(argv[1]);
+ } else {
+ cout << argv[0] << ", usage:" << endl;
+ cout << argv[0] << " [fileName | id_start id_end]" << endl;
+ }
+
+}
diff --git a/modeling/libraries/pml/tools/gensphere/CMakeLists.txt b/modeling/applications/pmltools/gensphere/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/gensphere/CMakeLists.txt
rename to modeling/applications/pmltools/gensphere/CMakeLists.txt
diff --git a/modeling/applications/pmltools/gensphere/gensphere.cpp b/modeling/applications/pmltools/gensphere/gensphere.cpp
new file mode 100644
index 0000000..9798138
--- /dev/null
+++ b/modeling/applications/pmltools/gensphere/gensphere.cpp
@@ -0,0 +1,323 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+#include <math.h>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+
+#include "../ansys2pml/programarg.h"
+
+// global parameters (command line arguments)
+string outputPML;
+int subdiv;
+PhysicalModel * pm;
+unsigned int atomIndex;
+StructuralComponent * elemSC;
+string shapeType;
+vector <double *> vertices;
+vector <unsigned int *> faces;
+
+// coordinates of one of the icosahedron vertex
+#define X 0.525731112119133696
+#define Z 0.850650808352039932
+
+// icosahedron vertices
+double icosahedronVertex[12][3] = {
+ {-X, 0.0, Z}, {X, 0.0, Z}, {-X, 0.0, -Z}, {X, 0.0, -Z},
+ {0.0, Z, X}, {0.0, Z, -X}, {0.0, -Z, X}, {0.0, -Z, -X},
+ {Z, X, 0.0}, {-Z, X, 0.0}, {Z, -X, 0.0}, {-Z, -X, 0.0}
+};
+
+// icosahedron faces
+unsigned int icosahedronFace[20][3] = {
+ {1,4,0}, {4,9,0}, {4,5,9}, {8,5,4}, {1,8,4},
+ {1,10,8}, {10,3,8}, {8,3,5}, {3,2,5}, {3,7,2},
+ {3,10,7}, {10,6,7}, {6,11,7}, {6,0,11}, {6,1,0},
+ {10,1,6}, {11,0,9}, {2,11,9}, {5,2,9}, {11,2,7}
+};
+
+// coordinates of the cube vertices
+#define C 0.5773502691896257645
+
+// cube vertices
+double cubeVertex[8][3] = {
+ {C, C, -C}, {C, C, C}, {C, -C, C}, {C, -C, -C},
+ {-C, C, -C}, {-C, C, C}, {-C, -C, C}, {-C, -C, -C}
+};
+
+// cube faces
+unsigned int cubeFace[6][4] = {
+ {0,1,2,3}, {0,4,5,1}, {1,5,6,2},
+ {4,0,3,7}, {5,4,7,6}, {2,6,7,3}
+};
+
+// -------------------- processArg ------------------------
+void processArg() {
+ outputPML = argVal["-o"];
+ subdiv = atoi(argVal["-l"].c_str());
+ shapeType = argVal["-t"];
+ if (shapeType=="ico") {
+ for (unsigned int i=0; i<12; i++)
+ vertices.push_back(icosahedronVertex[i]);
+ for (unsigned int i=0; i<20; i++)
+ faces.push_back(icosahedronFace[i]);
+ }
+ if (shapeType=="cube") {
+ for (unsigned int i=0; i<8; i++) {
+ vertices.push_back(cubeVertex[i]);
+ }
+ for (unsigned int i=0; i<6; i++)
+ faces.push_back(cubeFace[i]);
+ }
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "gensphere generating " << outputPML << " using " << subdiv << " level" << "of shape " << shapeType << endl;
+ cout << "The idea of subdvision is taken from the book of Frank Nielsen \"Visual Computing: Geometry, Graphics, and Vision\" , ISBN 1-58450-427-7, see http://www.charlesriver.com/visualcomputing" << endl;
+}
+
+// -------------------- newAtom ------------------------
+Atom * newAtom(double posA[3]) {
+ // look for a similar atom (similar position)
+ StructuralComponent *atoms = pm->getAtoms();
+ bool found = false;
+ unsigned int i=0;
+ while (i<atoms->getNumberOfStructures() && !found) {
+ double pos[3];
+ ((Atom *)atoms->getStructure(i))->getPosition(pos);
+ found = (sqrt((posA[0]-pos[0])*(posA[0]-pos[0]) + (posA[1]-pos[1])*(posA[1]-pos[1]) + (posA[2]-pos[2])*(posA[2]-pos[2])) < 1e-6);
+ i++;
+ }
+ if (!found) {
+ // new atom
+ Atom *a = new Atom(pm, atomIndex, posA);
+ pm->addAtom(a);
+ atomIndex++;
+ return a;
+ } else {
+ return ((Atom *)atoms->getStructure(i-1));
+ }
+}
+
+// -------------------- normalize ------------------------
+// Vertices should belong to the unit sphere.
+// so we perform normalization
+void normalize(double v[3]) {
+ double d = sqrt(v[0]*v[0] + v[1]*v[1] + v[2]*v[2]);
+ if (d>1.0e-6) {
+ v[0]/=d;
+ v[1]/=d;
+ v[2]/=d;
+ }
+}
+
+// -------------------- subdivide (3) ------------------------
+// Recursively subdivide the sphere
+void subdivide(Atom *a1, Atom *a2, Atom *a3, int depth) {
+ double v1[3], v2[3], v3[3];
+ a1->getPosition(v1);
+ a2->getPosition(v2);
+ a3->getPosition(v3);
+
+ if (depth == 0) {
+ normalize(v1);
+ a1->setPosition(v1);
+ normalize(v2);
+ a2->setPosition(v2);
+ normalize(v3);
+ a3->setPosition(v3);
+
+ // insert a new cell
+ Cell *c = new Cell(NULL, StructureProperties::TRIANGLE);
+
+ // add atoms
+ c->addStructure(a1);
+ c->addStructure(a2);
+ c->addStructure(a3);
+
+ // add the cell to the informative and exclusive component
+ elemSC->addStructure(c);
+
+ } else {
+ double v12[3], v23[3], v31[3];
+ // midpoint
+ for (unsigned int i = 0; i < 3; i++) {
+ v12[i] = (v1[i]+v2[i])/2.0;
+ v23[i] = (v2[i]+v3[i])/2.0;
+ v31[i] = (v3[i]+v1[i])/2.0;
+ }
+
+ // lift midpoints on the sphere
+ normalize(v12);
+ normalize(v23);
+ normalize(v31);
+
+ // insert them in the atoms
+ Atom *a12 = newAtom(v12);
+ Atom *a23 = newAtom(v23);
+ Atom *a31 = newAtom(v31);
+
+ // subdivide new triangles in 4
+ subdivide(a1, a12, a31, depth-1);
+ subdivide(a2, a23, a12, depth-1);
+ subdivide(a3, a31, a23, depth-1);
+ subdivide(a12, a23, a31, depth-1);
+ }
+}
+
+// -------------------- subdivide (4) ------------------------
+// Recursively subdivide the sphere
+void subdivide(Atom *a1, Atom *a2, Atom *a3, Atom *a4, int depth) {
+ double v1[3], v2[3], v3[3], v4[3];
+ a1->getPosition(v1);
+ a2->getPosition(v2);
+ a3->getPosition(v3);
+ a4->getPosition(v4);
+
+ if (depth == 0) {
+ normalize(v1);
+ a1->setPosition(v1);
+ normalize(v2);
+ a2->setPosition(v2);
+ normalize(v3);
+ a3->setPosition(v3);
+ normalize(v4);
+ a4->setPosition(v4);
+
+ // insert a new cell
+ Cell *c = new Cell(NULL, StructureProperties::QUAD);
+
+ // add atoms
+ c->addStructure(a1);
+ c->addStructure(a2);
+ c->addStructure(a3);
+ c->addStructure(a4);
+
+ // add the cell to the informative and exclusive component
+ elemSC->addStructure(c);
+
+ } else {
+ double v12[3], v23[3], v34[3], v41[3], vc[3];
+ // midpoint
+ for (unsigned int i = 0; i < 3; i++) {
+ v12[i] = (v1[i]+v2[i])/2.0;
+ v23[i] = (v2[i]+v3[i])/2.0;
+ v34[i] = (v3[i]+v4[i])/2.0;
+ v41[i] = (v4[i]+v1[i])/2.0;
+ vc[i] = (v1[i]+v2[i]+v3[i]+v4[i])/4.0;
+ }
+
+ // lift midpoints on the sphere
+ normalize(v12);
+ normalize(v23);
+ normalize(v34);
+ normalize(v41);
+ normalize(vc);
+
+ // insert them in the atoms
+ Atom *a12 = newAtom(v12);
+ Atom *a23 = newAtom(v23);
+ Atom *a34 = newAtom(v34);
+ Atom *a41 = newAtom(v41);
+ Atom *ac = newAtom(vc);
+
+ // subdivide new quad in 4
+ subdivide( a1, a12, ac, a41, depth-1);
+ subdivide(a12, a2, a23, ac, depth-1);
+ subdivide( ac, a23, a3, a34, depth-1);
+ subdivide(a41, ac, a34, a4, depth-1);
+ }
+}
+
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+
+ processArg();
+ printArg();
+
+ try {
+
+ // create a new physical model
+ pm = new PhysicalModel();
+ pm->setName("synthetic sphere subdiv " + argVal["-l"]);
+ pm->setInformativeComponents(new MultiComponent(NULL, "Informative Components"));
+
+ // create the new atom SC
+ StructuralComponent * atoms = new StructuralComponent(pm, "Atoms");
+ atomIndex=0;
+
+ // starts with the the initial shape
+ for (unsigned int i=0; i<vertices.size(); i++) {
+ Atom *a = new Atom(pm, atomIndex, vertices[i]);
+ atoms->addStructure(a);
+ atomIndex++;
+ }
+
+ // add the atom list to the pml
+ pm->setAtoms(atoms);
+
+ // create the new element SC
+ elemSC = new StructuralComponent(NULL, "Elements");
+
+ // subdivide each face of the triangle
+ for (unsigned int i=0; i<faces.size(); i++) {
+ if (shapeType=="ico") {
+ subdivide(pm->getAtom(faces[i][0]),
+ pm->getAtom(faces[i][1]),
+ pm->getAtom(faces[i][2]),
+ subdiv);
+ }
+ if (shapeType=="cube") {
+ subdivide(pm->getAtom(faces[i][0]),
+ pm->getAtom(faces[i][1]),
+ pm->getAtom(faces[i][2]),
+ pm->getAtom(faces[i][3]),
+ subdiv);
+ }
+ }
+
+ // add the element list to the pml
+ pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
+ pm->getExclusiveComponents()->addSubComponent(elemSC);
+
+ // save the result in the pml file
+ ofstream outputFile(outputPML.c_str());
+ pm->xmlPrint(outputFile);
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/insideout/CMakeLists.txt b/modeling/applications/pmltools/insideout/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/insideout/CMakeLists.txt
rename to modeling/applications/pmltools/insideout/CMakeLists.txt
diff --git a/modeling/applications/pmltools/insideout/insideout.cpp b/modeling/applications/pmltools/insideout/insideout.cpp
new file mode 100644
index 0000000..d66d79a
--- /dev/null
+++ b/modeling/applications/pmltools/insideout/insideout.cpp
@@ -0,0 +1,123 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+
+bool isIn(StructuralComponent *sc, Atom *a) {
+ unsigned int i=0;
+ bool found=false;
+ while (i<sc->getNumberOfStructures() && !found) {
+ found = (sc->getStructure(i)==a);
+ i++;
+ }
+ return found;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=3 && argc!=4) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml \"component\"" << endl;
+ cout << "\tRevert inside/out a given component, i.e. turn TRIANGLE and QUAD facet orientation inside/out or outside/in, output to: file-insideout.pml" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ cout << "-> please wait while reading " << filename << " for reverting orientation of ";
+ string c(argv[2]);
+ cout << "component " << c << endl;
+
+ PhysicalModel * pm = new PhysicalModel(filename.c_str());
+
+ cout << "-> get " << c << endl;
+
+ // get the component
+ Component *cpt = pm->getComponentByName(c);
+ if (!cpt) {
+ throw PMLAbortException("No component named " + c);
+ }
+ if (!cpt->isInstanceOf("StructuralComponent")) {
+ throw PMLAbortException("Component \"" + c +"\" is not a Structural Component");
+ }
+ StructuralComponent *sc=(StructuralComponent *) cpt;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
+ sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
+ throw PMLAbortException("Component \"" + c + "\": cannot revert component: does not contains any cell geometric type TRIANGLE or QUAD");
+ }
+
+ // Transform "inplace"
+ for (unsigned int i=0; i<cpt->getNumberOfCells(); i++) {
+ Cell *c=cpt->getCell(i);
+ if (c->getType()==StructureProperties::TRIANGLE
+ || c->getType()==StructureProperties::QUAD) {
+ // copy structures
+ vector <Structure *> copy;
+ for (unsigned int j=0; j<c->getNumberOfStructures(); j++) {
+ copy.push_back(c->getStructure(j));
+ }
+ c->deleteAllStructures();
+ // invert
+ for (int j=copy.size()-1; j>=0; j--) {
+ c->addStructure(copy[j]);
+ }
+ }
+ }
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-insideout.pml";
+ } else
+ filename="insideout.pml";
+
+ cout << "-> please wait while saving " << filename << " " << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" reverted " + c);
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+
+ delete pm;
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/mooreNeighborhood/CMakeLists.txt b/modeling/applications/pmltools/mooreNeighborhood/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/mooreNeighborhood/CMakeLists.txt
rename to modeling/applications/pmltools/mooreNeighborhood/CMakeLists.txt
diff --git a/modeling/applications/pmltools/mooreNeighborhood/mooreNeighborhood.cpp b/modeling/applications/pmltools/mooreNeighborhood/mooreNeighborhood.cpp
new file mode 100644
index 0000000..5fb8c19
--- /dev/null
+++ b/modeling/applications/pmltools/mooreNeighborhood/mooreNeighborhood.cpp
@@ -0,0 +1,174 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc != 3 && argc!=4) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml d [vonNeumann]" << endl;
+ cout << "create Moore neighborhood of distance d in a new exclusive structural component called \"Moore Neighborhood\", output to: file-Moore.pml" << endl;
+ cout << "Ai is a Moore neighbor of distance d of Aj if Aix-Ajx<d and Aiy-Ajy<d and Aiz-Ajz<d" << endl;
+ cout << "NOTE: to get von Neumann neighborhood, add vonNeumann as the thirs parameter (it will then use dist(ai,aj)<d as a criteria)" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ double mooreDist = atof(argv[2]);
+ bool isMoore = true;
+
+ if (argc == 4)
+ isMoore = (string(argv[3]) != "vonNeumann");
+
+ cout << "-> please wait while processing " << filename << " with d=" << mooreDist << endl;
+
+ PhysicalModel * pm = new PhysicalModel(filename.c_str());
+
+ // create the neigborhood
+ StructuralComponent * moore;
+
+ moore = new StructuralComponent(pm, "New Neighborhoods");
+
+ // get all atoms
+ StructuralComponent *sc = pm->getAtoms();
+
+ Atom *a;
+
+ double pos[3];
+
+ Atom *n;
+
+ double posn[3];
+
+ Cell *nCell;
+
+ unsigned int minN = UINT_MAX;
+
+ unsigned int maxN = 0;
+
+ unsigned int added = 0;
+
+ // brute force neighborhood
+ for (unsigned int i = 0; i < sc->getNumberOfStructures(); i++) {
+ a = (Atom *) sc->getStructure(i);
+ a->getPosition(pos);
+
+ // create neighborhood cell
+ nCell = new Cell(pm, StructureProperties::POLY_VERTEX);
+ stringstream nCellName;
+ nCellName << "Atom #" << a->getIndex();
+ ((Structure*)nCell)->setName(nCellName.str());
+
+ // check all other atoms!
+
+ for (unsigned int j = 0; j < sc->getNumberOfStructures(); j++) {
+ if (i != j) {
+ n = (Atom *) sc->getStructure(j);
+ n->getPosition(posn);
+
+ if (isMoore) {
+ if (fabs(posn[0] - pos[0]) <= mooreDist && fabs(posn[1] - pos[1]) <= mooreDist && fabs(posn[2] - pos[2]) <= mooreDist) {
+ nCell->addStructure(n);
+ added++;
+ }
+ } else {
+ // von Neumann
+ if (sqrt((posn[0] - pos[0])*(posn[0] - pos[0]) + (posn[1] - pos[1])*(posn[1] - pos[1]) + (posn[2] - pos[2])*(posn[2] - pos[2])) <= mooreDist) {
+ nCell->addStructure(n);
+ added++;
+ }
+ }
+ }
+ }
+
+ unsigned int nNeigh = nCell->getNumberOfStructures();
+
+ if (nNeigh > 0) {
+ moore->addStructure(nCell);
+ }
+
+ if (minN > nNeigh)
+ minN = nNeigh;
+
+ if (maxN < nNeigh)
+ maxN = nNeigh;
+ }
+
+ cout << "-> minN=" << minN << ", maxN=" << maxN << ", total: " << added << endl;
+
+ // add the new SC to the exclusive component
+ pm->getExclusiveComponents()->addSubComponent(moore);
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-";
+ }
+
+ if (isMoore)
+ filename += "Moore.pml";
+ else
+ filename += "vonNeumann.pml";
+
+ cout << "-> please wait while saving " << filename << endl;
+
+ ofstream outputFile(filename.c_str());
+ stringstream pmname(stringstream::out);
+ pmname << pm->getName();
+ if (isMoore)
+ pmname << " Moore";
+ else
+ filename += " vonNeumann";
+ pmname << " Neighborhoods d=" << mooreDist;
+ pm->setName(pmname.str());
+
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+
+ cout << "WARNING: there is now two Exclusive component representing neighborhood : \"Neighborhoods\" (the old neighborhood) and \"New Neighborhoods\" (the generated moore/vonNeumann neighborhood), do not forget to remove the old one" << endl;
+
+ delete pm;
+ } catch (PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/nobox2pml/CMakeLists.txt b/modeling/applications/pmltools/nobox2pml/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/nobox2pml/CMakeLists.txt
rename to modeling/applications/pmltools/nobox2pml/CMakeLists.txt
diff --git a/modeling/applications/pmltools/nobox2pml/nobox2pml.cpp b/modeling/applications/pmltools/nobox2pml/nobox2pml.cpp
new file mode 100644
index 0000000..7874f1a
--- /dev/null
+++ b/modeling/applications/pmltools/nobox2pml/nobox2pml.cpp
@@ -0,0 +1,366 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+//
+// C++ Implementation: nobox2pml
+//
+// Description:
+// WARNING: this is NOT a direct .noboite to PML translator !!!
+// the first argument is the name of a file (the nobox file) that you will have to arrange manually from the noboite.
+// The nobox format is as follow :
+// - nr of vertices (as given by the ghs3d command output) on the first line
+// - list of all coordinates (cut & paste the end part of the noboite to the beginning)
+// - nr of tetrahedra (as given by the ghs3d command output)
+// - and finally then the list of tetrahedra (the first part of the noboite file without the first garbage looking line)
+
+// here is an example of a nobox file:
+// 201
+// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
+// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
+// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
+// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
+// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
+// 204.927002 211.143997 65.9347992 204.996002 203.227005 63.8834991
+// 204.904999 197.218994 58.0499001 205.156998 195.229996 49.9992981
+// 204.904007 197.218002 41.9476013 204.994003 203.225998 36.1137009
+// 204.925995 211.143997 34.0623016 205.076996 218.942993 36.2391014
+// 205.117996 224.679993 42.0769997 195.733994 233.279999 49.9991989
+// 195.425995 231.682007 58.651001 195.128006 227.037003 65.908699
+// 194.822998 219.987 70.8787994 194.681 211.408997 72.7072983 194.744995
+// 202.714005 70.9886017 194.737 195.322006 66.1066971 194.841003
+// 190.419006 58.8510017 194.957001 188.701004 49.9998016 194.837997
+// 190.419006 41.1478004 194.733002 195.320999 33.8917999 194.740005
+// 202.712997 29.0091991 194.677994 211.406998 27.2901993 194.820999
+// 219.985992 29.1184006 195.126999 227.037003 34.0895996 195.425995
+// 231.682007 41.3474007 182.660004 238.115997 49.9992981 182.451996
+// 236.664993 58.9043999 182.085007 232.565994 66.7394028 181.636993
+// 226.253998 72.8107986 181.039993 218.354004 76.5053024 180.806
+// 209.505997 77.3675003 181.317993 200.705994 75.1343002 181.591995
+// 193.024002 70.060997 181.746994 187.490005 62.9435005 181.738007
+// 184.610001 54.4679985 181.735992 184.610001 45.5321999 181.742004
+// 187.490005 37.0563011 181.585007 193.024002 29.9388008 181.311996
+// 200.703003 24.8658009 180.802994 209.505005 22.6319008 181.039001
+// 218.352005 23.4941006 181.636002 226.253006 27.1879997 182.084
+// 232.565002 33.2593994 182.451004 236.664993 41.0942001 167.472
+// 240.304993 49.9994011 167.315994 238.871994 59.1222 166.912003
+// 234.809998 67.2751999 166.324997 228.537994 73.7573013 165.412003
+// 220.673004 77.9524994 163.651001 212.367996 79.447998 165.856003
+// 202.725006 77.8918991 166.429993 194.429001 73.637001 166.608002
+// 187.936996 67.093399 166.662003 183.886993 59.0017014 166.753998
+// 182.429001 50.0009003 166.658997 183.886993 41.0004005 166.602005
+// 187.936996 32.908699 166.423004 194.427994 26.3642006 165.848999
+// 202.725006 22.1098995 163.647995 212.365997 20.5538998 165.410995
+// 220.671005 22.0482006 166.324005 228.537003 26.2420998 166.910995
+// 234.809006 32.7238998 167.315994 238.871994 40.8764 151.835999
+// 239.468002 49.9996986 151.660004 237.951004 59.1351013 151.274002
+// 233.610992 67.2938004 150.830002 226.940994 73.6313019 150.115997
+// 218.690994 77.3936005 149.949997 209.399002 78.143898 150.544998
+// 200.186996 75.7360992 150.968002 192.516006 70.6867981 151.110992
+// 186.903 63.3594017 151.274994 183.906998 54.6599998 151.274002
+// 183.906998 45.3432999 151.106995 186.903 36.6436005 150.962006
+// 192.516006 29.3166008 150.539001 200.188004 24.2667007 149.944
+// 209.399994 21.8596992 150.113007 218.690994 22.6088009 150.828003
+// 226.940002 26.3701 151.272003 233.610992 32.7069016 151.660004
+// 237.951004 40.8646011 137.266006 235.638 50.0005989 137.052002
+// 233.746994 59.2244987 136.727997 228.546005 67.0988007 136.380997
+// 220.755997 72.3856964 136.190002 211.565002 74.2394028 136.380997
+// 202.220993 72.3259964 136.684998 194.445007 67.0942993 136.906998
+// 189.218994 59.2350998 137.018005 187.365005 50.0015984 136.906006
+// 189.220001 40.767601 136.682007 194.447006 32.9085007 136.378006
+// 202.223007 27.6765995 136.186005 211.567001 25.7646008 136.378998
+// 220.757996 27.6180992 136.727005 228.546997 32.9045982 137.052002
+// 233.748001 40.7779999 125.139 229.164001 50.0024986 124.925003
+// 226.662003 58.8370018 124.797997 220.257996 65.3336029 124.700996
+// 211.386993 67.7137985 124.739998 202.552994 65.2739029 124.971001
+// 196.110001 58.8339996 125.170998 193.675995 50.0007019 124.971001
+// 196.112 41.167099 124.737999 202.557007 34.7289009 124.698997
+// 211.391006 32.2905998 124.796997 220.261993 34.6725006 124.926003
+// 226.664001 41.1697998 116.166 220.483002 50.0068016 116.230003
+// 215.843994 58.0330009 116.362 206.574005 58.0284996 116.43 201.942001
+// 49.9977989 116.365997 206.580994 41.9715004 116.234001 215.852005
+// 41.9760017 114.734001 210.878006 49.9991989 174.122116 217.068161
+// 31.7504559 172.845322 217.308792 48.5277519 167.153168 214.523697
+// 39.7758484 181.559479 210.526749 34.7726517 188.018204 215.87796
+// 39.7380791 184.143738 224.294205 42.0575256 197.055756 214.458328
+// 38.7829208 194.991425 210.800476 54.7543221 193.28717 202.241409
+// 40.9057541 204.158218 205.777817 50.9520607 197.350235 221.431885
+// 46.0859756 205.353348 213.013306 46.1315346 136.512878 212.353867
+// 63.7603073 136.803589 212.550674 48.2269096 137.144806 220.346344
+// 61.4673576 145.934494 210.935974 55.5667152 147.122406 219.049301
+// 65.7673264 127.637863 213.684891 57.7648048 155.055756 219.283691
+// 57.2817078 157.627609 218.691803 68.3738556 158.877777 227.444443
+// 60.4090767 157.239014 214.618912 42.7295799 150.678391 224.44072
+// 42.8708191 156.86319 228.042023 52.577179 167.16449 229.505142
+// 47.8503952 166.877808 224.886551 59.4400215 167.344315 209.241409
+// 57.7920151 156.016373 211.103333 65.0439377 125.501251 217.264023
+// 49.4178391 144.429642 209.962738 39.080452 130.778366 213.858948
+// 40.0691223 140.463333 222.008209 39.4355965 139.815598 225.72168
+// 49.4672127 136.28949 202.349487 41.0455284 145.962448 195.281769
+// 48.8271103 147.488693 198.23613 37.7950897 136.704361 200.614502
+// 59.242939 150.481583 199.411041 60.4735184 152.468857 198.37587
+// 45.7318878 157.677902 191.62085 51.4769325 196.616882 218.971909
+// 57.1982651 204.238693 213.30249 54.1141624 159.744888 232.552795
+// 43.8564072 168.660782 225.179016 37.9129562 191.862534 205.648514
+// 62.5157318 180.80452 209.505508 49.9997406 183.883865 197.143555
+// 56.6907158 145.60112 228.086609 57.396431 175.108383 231.910431
+// 53.4562454 175.68959 225.918808 59.6542206 185.944397 224.478149
+// 56.2026367 174.792694 192.130005 49.9737282 174.053543 196.442856
+// 37.7757225 182.502289 197.298569 48.2248764 166.223877 195.831894
+// 42.2486687 173.008575 202.979706 46.7984734 166.829437 195.548477
+// 57.1409531 157.996948 207.388916 32.52491 171.89621 216.18663
+// 67.2036209 173.671951 200.933304 66.221962 180.062073 210.119934
+// 64.1635513 187.354813 211.602554 65.3569107 194.980927 199.277191
+// 52.4201088 123.912224 207.559799 50.1583328 158.063065 201.043579
+// 66.0226746 157.567657 206.597137 51.0658493 183.447632 200.285034
+// 38.0877419 169.998138 205.641113 32.1545448 136.224457 199.33667
+// 50.2796478 159.975189 221.28949 31.02672 144.484528 214.412399
+// 33.054985 146.594879 207.633087 66.7936783 158.706665 193.814636
+// 36.3628883
+// 764
+// 129 130 131 132 133 129 130 134 129 133 132 51 135 133 32 31 135 136 137 138
+// 135 136 139 133 135 18 139 140 135 138 137 16 135 16 137 31 141 142 143 144 141
+// 98 145 97 141 146 112 143 147 148 149 145 147 150 144 151 130 147 152 150 150
+// 130 153 152 154 147 152 130 147 155 130 154 156 154 155 147 141 143 142 146 142
+// 146 143 157 142 158 159 160 142 160 157 161 162 163 164 158 163 144 165 166 166
+// 163 101 165 85 86 103 163 163 144 166 167 83 163 101 166 84 163 168 85 163 168
+// 167 166 84 163 83 168 163 83 168 166 169 8 170 140 171 172 151 92 171 172 92 73
+// 136 173 174 175 171 172 73 74 171 55 152 153 171 153 74 55 176 145 77 96 143
+// 144 147 145 161 144 147 143 147 143 176 161 161 152 75 176 176 161 94 75 176 76
+// 152 75 147 176 145 149 149 76 57 56 149 145 148 78 147 152 149 154 149 154 56
+// 57 149 78 148 58 149 58 154 57 177 153 74 54 177 178 57 154 177 153 54 134 177
+// 134 130 153 178 177 37 179 177 153 56 55 130 154 178 177 180 181 182 47 180 181
+// 183 184 180 64 185 65 180 65 183 66 180 182 45 46 180 184 183 185 168 185 65
+// 183 131 183 150 186 187 61 188 41 187 178 58 39 178 187 189 39 187 40 60 41 178
+// 189 179 39 187 188 189 41 190 25 173 24 24 173 136 11 136 179 174 190 169 190
+// 23 179 190 40 189 41 133 134 34 52 179 190 23 39 40 39 190 189 13 191 12 138
+// 192 159 162 118 142 192 165 146 187 156 155 193 136 12 170 11 136 138 191 137
+// 179 174 190 189 136 179 133 174 136 169 11 170 136 190 174 173 136 137 174 133
+// 130 131 132 184 129 172 130 134 172 130 150 131 131 130 150 184 130 150 184 194
+// 49 195 31 132 130 189 155 174 189 155 187 130 196 181 49 195 196 49 181 68 129
+// 131 196 132 192 159 118 126 142 165 192 197 196 186 131 70 196 50 132 49 186
+// 198 70 90 167 150 144 194 150 199 198 186 151 150 199 198 186 90 199 198 186 88
+// 199 89 186 150 199 158 194 130 147 155 158 186 150 167 150 131 198 172 150 199
+// 158 151 147 150 194 144 200 98 99 80 129 196 50 132 129 172 72 198 192 197 115
+// 116 129 132 50 51 196 186 183 131 131 184 150 183 186 201 68 196 196 186 69 68
+// 186 150 131 198 130 174 132 133 88 201 68 186 194 155 156 166 150 194 130 147
+// 147 194 155 156 158 167 150 144 130 174 155 184 135 136 138 140 147 194 156 144
+// 155 174 175 184 130 155 187 154 161 110 94 109 194 184 185 183 142 151 161 144
+// 142 197 162 144 162 144 158 142 28 27 175 45 144 197 162 163 193 156 80 60 187
+// 193 155 188 193 82 166 83 155 193 185 188 80 193 200 156 178 179 38 39 193 156
+// 166 200 135 140 16 17 144 145 200 156 176 95 143 96 145 143 97 96 145 79 156
+// 148 147 176 149 152 196 183 186 201 67 68 201 183 196 181 183 68 196 181 184
+// 183 180 181 66 183 181 49 195 48 181 66 183 67 180 181 184 182 180 44 185 64
+// 201 168 85 66 194 167 168 166 168 185 64 65 167 168 85 201 194 183 168 167 168
+// 66 183 65 175 44 26 43 175 174 136 191 175 184 180 185 155 175 174 189 133 130
+// 179 134 190 174 173 189 187 193 60 156 184 150 183 194 147 150 151 152 152 130
+// 153 154 147 161 176 152 172 129 52 134 194 168 183 185 196 132 184 195 181 184
+// 182 195 193 83 185 63 194 185 155 166 186 158 164 167 194 166 168 185 168 201
+// 183 66 168 201 167 183 201 183 66 67 68 181 183 67 201 164 88 87 168 83 185 166
+// 177 56 154 57 177 130 179 178 130 178 189 179 187 59 39 58 178 154 58 57 200
+// 166 100 165 141 200 99 165 187 156 60 148 81 80 193 200 144 166 200 165 141 144
+// 200 165 141 142 144 165 141 97 145 143 199 158 105 88 186 158 199 88 85 201 86
+// 167 169 22 10 9 199 91 151 198 108 160 107 91 160 107 91 199 199 159 107 106
+// 158 164 105 88 186 164 158 88 160 159 107 199 200 99 81 80 188 63 44 43 135 34
+// 133 139 33 135 34 133 135 32 133 33 133 137 31 135 133 32 132 51 133 139 34 134
+// 174 184 132 195 133 179 139 134 135 138 16 140 138 137 15 191 138 140 6 16 138
+// 13 191 14 138 6 140 1 138 191 15 14 188 44 185 175 140 6 7 1 62 63 193 188 187
+// 155 189 188 43 189 175 188 176 76 149 152 141 97 143 112 187 130 178 189 188
+// 189 41 42 155 185 193 166 192 118 162 117 158 159 199 105 169 23 11 10 159 158
+// 199 160 159 157 121 127 150 152 153 151 174 133 130 179 179 134 36 20 177 179
+// 36 37 177 153 154 56 196 132 131 184 139 179 20 134 174 137 195 132 144 158 167
+// 163 171 172 74 153 191 29 14 28 199 160 151 91 171 151 172 153 182 175 184 180
+// 180 181 47 66 168 185 83 64 166 100 82 200 163 168 85 167 174 175 184 182 174
+// 184 195 182 180 185 44 175 147 148 156 154 188 185 44 63 177 134 54 36 172 134
+// 53 54 177 179 130 134 177 179 134 36 191 175 173 136 170 11 4 3 155 166 193 156
+// 151 152 75 161 149 148 154 58 130 174 184 132 166 200 82 193 187 193 61 60 187
+// 59 148 60 189 179 39 190 187 154 155 156 177 130 154 153 12 170 138 136 195 182
+// 47 29 181 48 195 47 167 186 150 183 185 65 183 180 163 165 197 101 192 157 128
+// 123 163 162 164 103 194 155 185 184 165 166 100 101 164 167 163 86 163 197 162
+// 103 152 153 55 56 176 94 161 95 163 101 197 102 192 159 127 157 142 161 157 143
+// 141 142 165 146 142 159 192 157 192 123 146 157 160 159 157 121 161 143 95 111
+// 161 93 151 109 160 161 151 109 118 159 105 119 192 162 197 117 138 15 6 5 160
+// 151 161 142 176 145 96 143 176 161 143 95 161 157 110 121 194 166 144 167 72
+// 172 92 198 186 89 199 90 172 153 54 74 130 174 179 189 198 91 71 90 146 112 143
+// 111 199 158 151 160 163 86 103 164 63 193 188 185 194 144 166 156 79 156 60 80
+// 145 200 79 98 149 145 78 77 145 148 78 79 197 162 103 117 39 187 189 40 170 9
+// 10 3 192 114 146 124 193 166 185 83 148 187 154 58 193 82 62 81 141 112 146 113
+// 181 195 182 47 191 28 182 29 141 113 146 114 151 198 91 92 192 127 159 126 193
+// 60 80 61 154 130 178 187 149 58 77 78 148 60 59 79 190 41 189 42 169 179 21 20
+// 190 173 42 189 139 35 134 20 139 134 35 34 139 8 140 19 140 7 2 1 135 136 133
+// 137 196 132 195 49 174 195 137 182 138 5 1 4 170 1 2 3 169 21 22 9 192 157 127
+// 128 179 39 22 38 132 133 129 130 140 7 18 19 135 33 17 32 157 122 111 110 146
+// 124 113 123 192 125 116 115 192 126 117 125 159 119 127 120 159 127 119 126 192
+// 117 126 118 137 29 191 182 192 125 128 126 197 115 116 101 159 118 126 119 159
+// 127 121 120 146 111 123 112 157 123 111 122 192 115 124 125 201 167 183 186 192
+// 126 128 127 173 11 25 12 197 117 103 116 160 108 120 121 170 3 4 1 161 121 110
+// 109 52 172 53 72 159 106 119 107 157 127 128 122 172 151 92 198 160 107 120 108
+// 139 136 179 133 11 24 169 136 162 118 159 105 162 118 105 104 148 79 156 60 137
+// 182 195 29 157 122 110 121 129 130 172 131 159 199 105 106 199 107 90 106 146
+// 113 124 114 129 196 70 50 186 198 131 70 146 123 113 112 170 9 3 2 165 114 100
+// 99 192 116 125 117 143 96 111 112 129 70 198 71 187 59 60 40 161 111 95 110 179
+// 21 37 38 145 97 79 78 145 77 96 78 192 124 115 114 157 122 121 127 145 98 79 97
+// 192 123 128 124 160 92 91 108 160 92 108 109 109 94 161 93 199 106 90 89 160
+// 121 109 108 197 116 103 102 188 175 43 44 129 134 133 52 165 115 101 100 162
+// 104 103 117 101 166 100 83 199 106 89 105 159 107 119 120 164 105 87 104 164 88
+// 87 105 145 78 96 97 162 104 117 118 190 42 25 41 169 139 136 179 195 31 132 137
+// 86 167 163 85 141 113 114 99 196 49 69 50 165 114 115 100 193 83 63 82 141 97
+// 113 98 132 137 31 133 173 174 175 189 129 72 52 71 144 158 142 151 144 156 200
+// 166 164 104 87 86 192 124 146 123 141 112 113 97 139 140 169 136 192 146 114
+// 165 200 100 82 99 176 96 77 95 147 144 161 151 148 78 59 58 176 95 76 94 192
+// 197 165 115 151 109 93 92 174 137 191 182 171 93 74 73 163 102 84 101 198 71 91
+// 72 183 68 201 196 196 186 70 69 163 197 103 102 140 169 136 170 136 11 173 12
+// 68 186 69 88 169 179 22 21 198 90 71 70 73 72 172 92 23 179 22 169 195 48 30 47
+// 150 172 198 151 186 90 70 89 25 190 173 42 169 9 170 8 170 140 8 2 163 101 84
+// 83 172 73 53 72 199 88 105 89 143 111 96 95 200 82 193 81 66 201 86 85 201 86
+// 67 66 188 42 43 189 157 122 128 123 174 133 137 132 168 84 64 83 136 12 173 191
+// 93 75 151 171 176 75 94 76 153 172 130 150 166 82 100 83 142 162 192 159 161
+// 110 95 94 99 200 81 82 169 190 24 23 197 116 102 101 143 96 112 97 12 191 26
+// 173 148 79 59 78 200 79 98 80 196 131 183 184 26 43 25 173 163 84 102 85 138
+// 170 4 1 187 41 189 40 193 81 61 80 191 27 175 28 26 191 175 173 176 95 77 76 37
+// 56 36 177 191 12 138 136 56 36 177 55 4 12 170 138 171 93 73 92 54 73 172 74
+// 171 92 151 93 190 169 136 179 152 154 56 149 153 152 154 56 140 8 2 19 75 151
+// 171 152 129 50 70 51 196 70 50 69 171 93 75 74 171 152 151 153 75 93 151 161
+// 191 28 14 27 93 94 161 75 164 104 86 103 192 128 125 124 150 172 151 153 171 75
+// 152 55 201 87 67 86 201 87 88 68 161 111 157 143 176 149 77 145 79 156 200 145
+// 159 106 105 119 161 110 157 111 199 107 91 90 163 144 158 162 142 158 162 159
+// 129 71 52 51 168 84 85 65 186 89 69 88 72 129 52 172 145 143 176 147 147 145
+// 156 148 175 180 45 44 179 38 22 21 196 68 69 49 181 67 68 48 138 4 13 5 180 66
+// 46 65 155 184 175 185 152 56 55 75 133 33 52 34 193 82 63 62 193 61 81 62 200
+// 99 165 100 186 89 70 69 155 188 175 189 54 36 74 177 175 28 182 191 182 175 180
+// 45 31 133 32 132 45 28 182 175 137 30 195 31 140 17 7 6 57 177 37 178 129 131
+// 172 198 129 71 198 72 158 159 105 162 187 39 59 40 176 77 149 76 178 57 58 38
+// 186 201 167 164 177 74 153 55 149 56 152 76 178 38 58 39 149 57 76 77 187 154
+// 58 178 179 178 38 37 160 159 120 107 160 109 151 92 160 161 109 121 163 103 85
+// 102 183 167 194 150 150 158 144 151 53 54 73 172 151 158 142 160 182 47 29 46
+// 135 31 17 16 155 188 185 175 180 65 46 45 134 35 54 20 134 34 53 35 185 64 44
+// 63 168 65 85 66 180 46 66 47 133 51 33 32 160 159 121 120 160 161 121 157 142
+// 157 160 159 139 20 8 35 138 15 137 16 180 64 45 44 129 133 51 52 132 31 50 32
+// 134 54 35 53 36 74 177 55 141 200 145 98 138 14 5 13 134 172 53 52 169 8 21 9
+// 190 40 23 39 130 134 172 153 160 151 91 92 198 92 72 91 173 12 25 26 181 47 67
+// 48 187 193 188 61 195 49 31 48 187 58 148 59 147 154 149 148 195 29 47 30 39
+// 179 22 23 137 29 30 15 182 29 28 46 180 65 45 64 170 11 3 10 129 70 196 131 37
+// 178 38 57 175 44 27 26 168 84 65 64 132 50 31 49 195 30 48 31 199 198 90 91 136
+// 24 169 190 188 62 43 42 43 175 173 26 193 62 188 61 149 77 58 57 135 33 34 18
+// 179 37 20 36 182 45 46 28 173 43 25 42 189 42 43 173 163 165 144 197 181 48 68
+// 49 190 41 25 24 136 191 174 137 56 57 177 37 190 173 136 24 27 26 191 175 188
+// 61 62 42 190 23 40 24 141 113 99 98 23 169 11 24 152 56 75 76 190 41 24 40 169
+// 20 139 179 169 8 139 20 169 140 139 8 135 139 136 140 187 41 60 61 134 34 52 53
+// 147 145 144 156 179 20 37 21 139 19 140 18 171 55 74 75 135 140 17 18 135 139
+// 18 34 137 15 191 29 138 170 1 140 170 140 2 1 169 170 10 11 136 138 140 170 139
+// 19 35 8 135 32 17 31 169 10 22 23 134 20 54 36 169 20 21 8 135 33 18 17 132 51
+// 32 50 140 18 7 17 129 131 198 70 138 1 5 6 181 67 47 66 169 10 170 9 80 79 156
+// 200 170 2 8 9 139 34 35 19 137 31 16 30 138 16 6 15 137 30 16 15 188 42 41 61
+// 172 54 153 134 138 5 14 15 142 192 146 157 191 13 27 14 170 12 4 11 191 14 29
+// 15 147 151 161 152 191 26 27 13 180 47 182 46 186 201 164 88 137 29 195 30 196
+// 181 195 184 165 197 101 115 201 87 68 67 141 165 99 114 141 145 144 143 173 189
+// 175 43 142 192 162 197 192 165 114 115 185 63 83 64 138 4 12 13 13 12 191 26
+// 154 148 156 187 164 104 162 105 146 157 123 111 201 86 164 87 173 25 11 24 201
+// 164 86 167 163 164 158 167 192 117 197 116 175 45 27 44 158 164 162 105 129 71
+// 51 70 164 103 162 104 133 52 33 51 141 114 146 165 142 143 144 161 146 157 111
+// 143 182 174 175 191 141 200 98 99 140 16 17 6 140 19 2 7 139 18 34 19 188 63 43
+// 62 184 155 130 194 141 144 145 200 142 197 144 165
+
+#include <iostream>
+#include <string>
+#include <fstream>
+
+using namespace std;
+
+int main(int argc, char ** argv) {
+
+ // open the noboite.txt file
+ string filename(argv[1]);
+ ifstream nobox(filename.c_str());
+
+ // save the result in the pml file
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-out.pml";
+ } else
+ filename += "-out.pml";
+ ofstream outputFile(filename.c_str());
+ outputFile << "<!-- Created by npbox2pml (c) E Promayon, TIMC (c) 1997-2005 -->" << endl;
+ outputFile << "<physicalModel name=\"from ghs3d\" >" << endl;
+
+ // vertices
+ unsigned int nVertices;
+ nobox >> nVertices;
+
+ outputFile << "<atoms>" << endl;
+ outputFile << "<structuralComponent name=\"vertices\">" << endl;
+
+ double x, y, z;
+ for (unsigned int i=1; i<=nVertices; i++) {
+ // read position
+ nobox >> x;
+ nobox >> y;
+ nobox >> z;
+ // write atom
+ outputFile << "<atom>" << endl;
+ outputFile << "<atomProperties index=\"" << i << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
+ outputFile << "</atom>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</atoms>" << endl;
+
+ // regions
+ outputFile << "<exclusiveComponents>" << endl;
+ outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
+ outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
+ outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
+ for (unsigned int i=1; i<=nVertices; i++)
+ outputFile << "<atomRef index=\"" << i << "\"/>" << endl;
+ outputFile << "</cell>" << endl;
+ outputFile << "</structuralComponent>" << endl;
+
+ // tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
+ unsigned int nTetra;
+ nobox >> nTetra;
+
+ outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+ outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ int id;
+ for (unsigned int i=0; i<nTetra; i++) {
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties type=\"TETRAHEDRON\" />" << endl;
+ for (unsigned int j=0; j<4; j++) {
+ nobox >> id;
+ outputFile << "<atomRef index=\"" << id << "\" />" << endl;
+ }
+ outputFile << "</cell>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</multiComponent>" << endl;
+ outputFile << "</exclusiveComponents>" << endl;
+ outputFile << "</physicalModel>" <<endl;
+
+ outputFile.close();
+
+}
diff --git a/modeling/libraries/pml/tools/obj2pml/CMakeLists.txt b/modeling/applications/pmltools/obj2pml/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/obj2pml/CMakeLists.txt
rename to modeling/applications/pmltools/obj2pml/CMakeLists.txt
diff --git a/modeling/applications/pmltools/obj2pml/obj2pml.cpp b/modeling/applications/pmltools/obj2pml/obj2pml.cpp
new file mode 100644
index 0000000..b1e9ba6
--- /dev/null
+++ b/modeling/applications/pmltools/obj2pml/obj2pml.cpp
@@ -0,0 +1,274 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// obj format description: http://www.cs.huji.ac.il/~danix/modeling/Format_Obj.html
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+
+// the input .obj file
+std::ifstream objStream;
+PhysicalModel *pm;
+unsigned lineNr;
+bool eof;
+
+// a .obj line
+typedef struct {
+ string directive;
+ string data;
+ bool ok;
+} ObjLine;
+
+ObjLine currentLine;
+
+// -------------------- getNext ------------------------
+// get the next current line
+void getNext() {
+ char l[200];
+ string line;
+ currentLine.ok = false;
+
+ while (!eof && !currentLine.ok) {
+ eof = !(objStream.getline(l,199));
+ lineNr++;
+ if (l[0]!='#') {
+ line = l;
+
+ unsigned int space = line.find(' ');
+ if (space != string::npos && space != 0) {
+ currentLine.directive = line.substr(0,space);
+ currentLine.data = line.substr(space+1);
+ currentLine.ok = true;
+ }
+ }
+ }
+
+}
+
+// -------------------- getVector ------------------------
+// get the double 3D vector in the current data
+void getVector(double d[3]) {
+ stringstream data(currentLine.data, std::stringstream::in);
+
+ for (unsigned int i=0; i<3; i++)
+ data >> d[i];
+}
+
+// -------------------- getFacetType ------------------------
+// return 3 for triangular facets and 4 for quadrangular facets, 0 if there is an error
+// current data is something like "vertexId/textureId/normalId vertexId/textureId/normalId..."
+unsigned int getFacetType() {
+ int count=0;
+ unsigned int space = 0;
+
+ do {
+ space = currentLine.data.find(' ', space+1);
+ if (space != string::npos)
+ count++;
+ } while (space != string::npos);
+
+ return count+1;
+}
+
+// -------------------- getVertex ------------------------
+// get the vertex list {i0, j0, k0} in a facet directive data "i0/j0/k0 i1/j1/k1 i2/j2/k2"
+void getVertex(unsigned int size, int v[]) {
+ stringstream data(currentLine.data, std::stringstream::in);
+ string buff;
+
+ for (unsigned int i=0; i<size; i++) {
+ data >> buff; // buff is of the form "4/4" or "2/33/32" or "4"
+ unsigned int slash = buff.find('/');
+ //if (slash != string::npos) {
+ v[i] = atoi(buff.substr(0,slash).c_str());
+ //}
+ }
+}
+
+
+// -------------------- vertexToAtoms ------------------------
+StructuralComponent * vertexToAtoms() {
+ StructuralComponent * atoms = new StructuralComponent(NULL, "Atoms");
+ double pos[3];
+ unsigned int atomIndex;
+
+ // very important: start at 1 to have the same index system
+ atomIndex=1;
+
+ // go to the first v directive
+ while (!eof && currentLine.directive!="v") {
+ getNext();
+ }
+
+ do {
+ if (currentLine.ok && currentLine.directive=="v") {
+ getVector(pos);
+ atoms->addStructure(new Atom(NULL, atomIndex++, pos));
+ }
+ getNext();
+ } while (!eof);
+
+ cout << "Found atom #1 to #" << atomIndex << endl;
+
+ return atoms;
+}
+
+// -------------------- facetsToSC ------------------------
+void facetsToSC(MultiComponent *mother) {
+ StructuralComponent * group = new StructuralComponent(NULL, "Facets");
+ int * vertex;
+ Cell *c;
+ unsigned int type;
+
+ // go to the first f directive
+ while (!eof && currentLine.directive!="f" && currentLine.directive!="g" && currentLine.directive!="o") {
+ getNext();
+ }
+
+ // process f directives
+ do {
+ if (currentLine.ok && (currentLine.directive=="g" || currentLine.directive=="o")) {
+ // insert the current group if exists
+ if (group->getNumberOfStructures()>0)
+ mother->addSubComponent(group);
+ // create a new group
+ group = new StructuralComponent(NULL, currentLine.data);
+ }
+ if (currentLine.ok && currentLine.directive=="f") {
+ // create cell depending on type
+ type = getFacetType();
+ switch (type) {
+ case 3:
+ c = new Cell(NULL, StructureProperties::TRIANGLE);
+ break;
+ case 4:
+ c = new Cell(NULL, StructureProperties::QUAD);
+ break;
+ default:
+ c=NULL;
+ cerr << "line " << lineNr << ": error: cannot manage facet using " << type << " vertices" << endl;
+ break;
+ }
+
+ if (c!=NULL) {
+ // get atom indexes
+ vertex = new int[type];
+ getVertex(type, vertex);
+
+ // add atoms
+ for (unsigned int i=0; i<type; i++) {
+ Atom *a = pm->getAtom(vertex[i]);
+ if (a!=NULL)
+ c->addStructure(a);
+ else
+ cerr << "line " << lineNr << ": error: cannot find vertex #" << vertex[i] << endl;
+ }
+
+ // add facet to current group
+ group->addStructure(c);
+
+ delete [] vertex;
+ }
+ }
+
+ // go to the next directive
+ getNext();
+ } while (!eof);
+
+ // insert the current group if exists
+ if (group->getNumberOfStructures()>0)
+ mother->addSubComponent(group);
+
+ cout << "Found " << mother->getNumberOfSubComponents() << " groups, total " << mother->getNumberOfCells() << " facets" << endl;
+}
+
+// -------------------- init ------------------------
+void init() {
+ currentLine.ok = false;
+ eof = false;
+ lineNr = 0;
+}
+
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=2) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.obj" << endl;
+ cout << "if file.obj is a valid Wavefront OBJ format, then a corresponding file.pml is created" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+
+ // open the obj file
+ string filename(argv[1]);
+ objStream.open(filename.c_str());
+ if (!objStream.is_open()) {
+ cerr << "Error: cannot open file " << filename << endl;
+ exit(1);
+ }
+ init();
+
+ // create a new physical model
+ pm = new PhysicalModel();
+ pm->setName("PML for " + filename);
+
+ // first pass: read the vertex, and build atoms
+ pm->setAtoms(vertexToAtoms());
+
+ // rewind
+ objStream.clear(); // clear the ios::eof flag, etc...
+ objStream.seekg(0,ios::beg); // rewind
+ init();
+
+ // second pass: read the facets and build the corresponding SC
+ pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
+ facetsToSC(pm->getExclusiveComponents());
+ // close input
+ objStream.close();
+
+ // save the result in the pml file
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += ".pml";
+ } else
+ filename += ".pml";
+ ofstream outputFile(filename.c_str());
+ pm->xmlPrint(outputFile);
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/obj2pml/truth_cube.obj b/modeling/applications/pmltools/obj2pml/truth_cube.obj
similarity index 100%
rename from modeling/libraries/pml/tools/obj2pml/truth_cube.obj
rename to modeling/applications/pmltools/obj2pml/truth_cube.obj
diff --git a/modeling/libraries/pml/tools/optimizeMesh/CMakeLists.txt b/modeling/applications/pmltools/optimizeMesh/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/optimizeMesh/CMakeLists.txt
rename to modeling/applications/pmltools/optimizeMesh/CMakeLists.txt
diff --git a/modeling/applications/pmltools/optimizeMesh/optimizeMesh.cpp b/modeling/applications/pmltools/optimizeMesh/optimizeMesh.cpp
new file mode 100644
index 0000000..e17e4b7
--- /dev/null
+++ b/modeling/applications/pmltools/optimizeMesh/optimizeMesh.cpp
@@ -0,0 +1,381 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <math.h>
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+
+/// global variables
+// -------------------- the physical model being processed ------------------------
+PhysicalModel * pm;
+
+// -------------------- all cluster ------------------------
+class Cluster;
+vector <Cluster *> allClusters;
+
+// first atom is now replaced by 2nd atom
+map<Atom *, Atom *> replacement;
+
+double precision;
+unsigned int nrOfNewAtoms;
+
+/** class Cluster
+ *
+ * a cluster is a set of point that are nearly at the same place (at a given precision)
+ */
+class Cluster {
+public:
+ /// create a cluster of this atom, using the given precision
+ Cluster(double distance);
+
+ ~Cluster();
+
+ /// get composing atom by index
+ Atom * getAtom(unsigned int id);
+
+ /// add an atom to the cluster if in the given precision (true if added) (update center)
+ bool addAtom(Atom *);
+
+ /// get the center (create if necessary)
+ Atom * getCenter();
+
+ /// get nr of atoms in the cluster
+ unsigned int nrOfAtoms();
+
+ /// current atom index for new atoms
+ static unsigned int atomIndex;
+
+private:
+ /// cluster center
+ Atom *center;
+
+ /// the cluster cell
+ Cell *myCell;
+
+ /// distance precision
+ double distance;
+
+ /// update center position
+ void updateCenter();
+};
+
+unsigned int Cluster::atomIndex = 10000;
+
+
+// -------------------- constructor/destructor ------------------------
+Cluster::Cluster(double distance) {
+ this->distance = distance;
+ myCell = new Cell(pm, StructureProperties::POLY_VERTEX);
+ center = new Atom(pm, Cluster::atomIndex++);
+ Cluster::atomIndex++;
+ nrOfNewAtoms++;
+ //pm->addAtom(center);
+}
+
+Cluster::~Cluster() {
+ delete myCell;
+ delete center;
+}
+
+// -------------------- updateCenter ------------------------
+void Cluster::updateCenter() {
+ double pos[3];
+ double posC[3];
+ unsigned int size = myCell->getNumberOfStructures();
+
+ for (unsigned int j=0; j<3; j++)
+ posC[j] = 0.0;
+
+ for (unsigned int i=0; i<size; i++) {
+ ((Atom *)myCell->getStructure(i))->getPosition(pos);
+ for (unsigned int j=0; j<3; j++)
+ posC[j] += pos[j];
+ }
+
+ for (unsigned int j=0; j<3; j++)
+ posC[j] /= ((double)size);
+
+ center->setPosition(posC);
+}
+
+// -------------------- getCenter ------------------------
+Atom * Cluster::getCenter() {
+ return center;
+}
+
+// -------------------- getAtom ------------------------
+Atom * Cluster::getAtom(unsigned int id) {
+ return ((Atom*)myCell->getStructure(id));
+}
+
+// -------------------- nrOfAtoms ------------------------
+unsigned int Cluster::nrOfAtoms() {
+ return myCell->getNumberOfStructures();
+}
+
+// -------------------- addAtom ------------------------
+bool Cluster::addAtom(Atom *a) {
+ double posC[3];
+ center->getPosition(posC);
+ double pos[3];
+ a->getPosition(pos);
+ double dist = 0.0;
+ for (unsigned int i=0; i<3; i++)
+ dist += (posC[i]-pos[i])*(posC[i]-pos[i]);
+ dist = sqrt(dist);
+
+ if (nrOfAtoms()==0 || dist<distance) {
+ myCell->addStructure(a);
+ updateCenter();
+ return true;
+ } else {
+ return false;
+ }
+}
+
+
+// -------------------- insert ------------------------
+Cluster * insert(Atom *a) {
+ vector <Cluster *>::iterator it;
+
+ // look into allClusters for equivalence
+ it = allClusters.begin();
+ while (it!=allClusters.end() && !(*it)->addAtom(a))
+ it++;
+
+ // not found => insert
+ if (it==allClusters.end()) {
+ // no cluster found: create a new one
+ Cluster *c = new Cluster(precision);
+ c->addAtom(a);
+ allClusters.push_back(c);
+ return c;
+ } else {
+ return (*it);
+ }
+
+}
+
+// -------------------- update ------------------------
+void update(MultiComponent *mc) {
+ if (mc==NULL) {
+ cout << "0 cells)" << endl;
+ return;
+ }
+
+ cout << mc->getNumberOfCells() << " cells)" << endl;
+ unsigned int degeneratedCount=0;
+
+ // WARNING non-rentrant loop
+ for (unsigned int i=0; i<mc->getNumberOfCells(); i++) {
+ Cell *c = mc->getCell(i);
+ StructuralComponent *sc = c->getAtoms();
+ c->deleteAllStructures();
+ cout << '\r' << i << flush;
+ // remove previous list
+ for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
+ c->removeStructure(sc->getStructure(j));
+ }
+ // check it was done properly
+ if (c->getNumberOfStructures()>0) {
+ cout << "Cell #" << c->getIndex() << " cannot delete all atoms (still has " <<c->getNumberOfStructures() << ")" << endl;
+ }
+ // add new atoms
+ map<Atom *, Atom *>::iterator proxy;
+ for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
+ proxy = replacement.find((Atom *)sc->getStructure(j));
+ if (proxy==replacement.end()) {
+ // not found?!
+ cout << "Cell #" << c->getIndex() << " cannot find replacement for Atom#" << sc->getStructure(i)->getIndex() << endl;
+ } else {
+ c->addStructureIfNotIn(proxy->second);
+ }
+ }
+ // check that the cell did not degenerate
+ StructureProperties::GeometricType t = c->getType();
+ int normalSize = ((t == StructureProperties::LINE)?2:
+ ((t == StructureProperties::TRIANGLE)?3:
+ ((t == StructureProperties::QUAD)?4:
+ ((t == StructureProperties::TETRAHEDRON)?4:
+ ((t == StructureProperties::WEDGE)?6:
+ ((t == StructureProperties::HEXAHEDRON)?8:-1))))));
+ if (normalSize!=-1 && normalSize!=(int)c->getNumberOfStructures()) {
+ cout << "deleting degenerated Cell #" << c->getIndex() << ": it is a " <<
+ StructureProperties::toString(t) << " and should have " << normalSize <<
+ " atoms, but has now " << c->getNumberOfStructures() << flush;
+ degeneratedCount++;
+ c->getStructuralComponent(0)->removeStructure(c);
+ // a cell was deleted, as it is a non re-entrant loop, get back one index
+ i--;
+ }
+ }
+ cout << flush;
+ cout << degeneratedCount << " degenerated cells removed " << endl;
+}
+
+// -------------------- saveClusters ------------------------
+void saveClusters(string clusterFile) {
+ stringstream clusterOSS;
+ clusterOSS << precision;
+
+
+ string nonClusterFile = clusterFile;
+ unsigned int pLast = clusterFile.rfind(".");
+
+ if (pLast != string::npos) {
+ clusterFile.erase(pLast);
+ clusterFile += "-clusters-" + clusterOSS.str() + ".txt";
+ } else
+ clusterFile="clusters-" + clusterOSS.str() + ".txt";
+
+ pLast = nonClusterFile.rfind(".");
+ if (pLast != string::npos) {
+ nonClusterFile.erase(pLast);
+ nonClusterFile += "-non-clusters-" + clusterOSS.str() + ".txt";
+ } else
+ nonClusterFile = "non-clusters-" + clusterOSS.str() + ".txt";
+
+ cout << "-> please wait while saving cluster informations in " << clusterFile << " (" << pm->getNumberOfAtoms() - allClusters.size() << " clusters) and non-clusters in " << nonClusterFile << endl;
+ ofstream clusterOutputFile(clusterFile.c_str());
+ ofstream nonClusterOutputFile(nonClusterFile.c_str());
+ for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
+ if ((*it)->nrOfAtoms()>1) {
+ clusterOutputFile << (*it)->getCenter()->getIndex() << " : ";
+ for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++)
+ clusterOutputFile << (*it)->getAtom(i)->getIndex() << " ";
+ clusterOutputFile << endl;
+ } else {
+ nonClusterOutputFile << (*it)->getAtom(0)->getIndex() << endl;
+ }
+ }
+ clusterOutputFile.close();
+ nonClusterOutputFile.close();
+}
+
+// -------------------- optimize ------------------------
+void optimize(string clusterFile) {
+ StructuralComponent *atoms = pm->getAtoms();
+
+ // create clusters
+ for (unsigned int i=0; i<atoms->getNumberOfStructures(); i++) {
+ insert((Atom *) atoms->getStructure(i));
+ cout << '\r' << i << flush;
+ }
+ cout << endl;
+
+ cout << "found " << allClusters.size() << " clusters, for " << atoms->getNumberOfStructures() << " atoms" << endl;
+ cout << "-> please wait while removing " << atoms->getNumberOfStructures() - allClusters.size() << " atoms" << endl;
+
+ // create newAtoms with all atoms that are alone in their clusters and
+ // all cluster centers
+ StructuralComponent * newAtoms = new StructuralComponent(pm);
+ for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
+ if ((*it)->nrOfAtoms()==1) {
+ newAtoms->addStructure((*it)->getAtom(0));
+ replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(0), (*it)->getAtom(0)));
+ } else {
+ newAtoms->addStructure((*it)->getCenter());
+ // memorize replacements
+ for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++) {
+ replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(i), (*it)->getCenter()));
+ }
+ }
+ }
+
+ // save the clusters and non cluster
+ saveClusters(clusterFile);
+
+ // update all atoms using replacements
+ cout << "-> please wait while replacing atoms in exclusive components (";
+ update(pm->getExclusiveComponents());
+ cout << "-> please wait while replacing atoms in informative components (";
+ update(pm->getInformativeComponents());
+
+ // Use new atoms instead of atoms
+ cout << "-> please wait while changing atoms" << endl;
+ pm->setAtoms(newAtoms, false); // do not delete old atom list!
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=3) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml precision" << endl;
+ cout << "output to: file-optimized-precision.pml" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ precision = atof(argv[2]);
+ // read the pml
+ string filename(argv[1]);
+ cout << "-> please wait while opening " << filename << " for optimizing precision " << precision << endl;
+ pm = new PhysicalModel(filename.c_str());
+
+ cout << "-> please wait while optimizing " << pm->getNumberOfAtoms() << " atoms..." << endl;
+
+ optimize(filename);
+ /*
+ // now, we have the right component, let's do some work...
+ nrOfNewAtoms = 0;
+ StructuralComponent * refined = refine(sc);
+
+ // add the new SC to the exclusive component
+ if (refined)
+ pm->getExclusiveComponents()->addSubComponent(refined);
+ */
+
+ // save the result
+ stringstream clusterOSS;
+ clusterOSS << precision;
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-optimized-" + clusterOSS.str() + ".pml";
+ } else
+ filename="optimized-" + clusterOSS.str() + ".pml";
+
+ cout << "-> please wait while saving " << filename << " (" << nrOfNewAtoms << " new atoms)" << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" optimized for "+clusterOSS.str());
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+ outputFile.close();
+
+ delete pm;
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/pml2ansys/CMakeLists.txt b/modeling/applications/pmltools/pml2ansys/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/pml2ansys/CMakeLists.txt
rename to modeling/applications/pmltools/pml2ansys/CMakeLists.txt
diff --git a/modeling/applications/pmltools/pml2ansys/pml2ansys.cpp b/modeling/applications/pmltools/pml2ansys/pml2ansys.cpp
new file mode 100644
index 0000000..3bd31c6
--- /dev/null
+++ b/modeling/applications/pmltools/pml2ansys/pml2ansys.cpp
@@ -0,0 +1,212 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+
+// the input .obj file
+PhysicalModel *pm;
+string pmlFile;
+string outputBase;
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for(unsigned int i=0; i<sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for(int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if(equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if(find(name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+ for(iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-f", "none" },
+ { "-o", "pml2ansys-output" },
+};
+
+const char* usage = "usage:\n"
+ "pml2ansys -f=document.pml [-o=output]\n"
+ "Transform a PML document containing an 'Elements' exclusive structural component to a .node and .elem (readable in ANSYS)\n"
+ "(Note no space around '=')\n"
+ "Where the flags can be any of: \n"
+ "f (input pml document), o (output base file name) \n";
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// -------------------- processArg ------------------------
+void processArg() {
+ pmlFile = argVal["-f"];
+ outputBase = argVal["-o"];
+ if (pmlFile=="none") {
+ cerr << "Argument error: -f is mandatory" << usage << endl;
+ exit(-1);
+ }
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "pml2ansys generating " << outputBase << ".elem and " << outputBase << ".node from " << pmlFile << endl;
+ cout << endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+ //argVal.print();
+
+ processArg();
+ printArg();
+
+ try {
+ pm = new PhysicalModel(pmlFile.c_str());
+
+ //-- create the .node
+ // open the node file for writing
+ string nodeFile = outputBase + ".node";
+ string nodeFileTxt = outputBase + "-node.txt";
+ std::ofstream nodeStream;
+ nodeStream.open(nodeFile.c_str());
+ if (!nodeStream.is_open()) {
+ cerr << "Error: cannot open file " << nodeFile << endl;
+ exit(1);
+ }
+ std::ofstream nodeStreamTxt;
+ nodeStreamTxt.open(nodeFileTxt.c_str());
+ if (!nodeStreamTxt.is_open()) {
+ cerr << "Error: cannot open file " << nodeFileTxt << endl;
+ exit(1);
+ }
+
+ StructuralComponent *sc = pm->getAtoms();
+ Atom *a;
+ double pos[3];
+ nodeStream.setf(ios::fixed, ios::floatfield); // set fixed floating format
+ nodeStream.precision(12);
+ nodeStreamTxt.setf(ios::fixed, ios::floatfield); // set fixed floating format
+ nodeStreamTxt.precision(12);
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ a = (Atom *) sc->getStructure(i);
+ a->getPosition(pos);
+ nodeStream << a->getIndex()+1 << " " << pos[0] << " " << pos[1] << " " << pos[2] << endl; //<< " 0 0 0" << endl;
+ nodeStreamTxt << "n," << a->getIndex()+1 << "," << pos[0] << "," << pos[1] << "," << pos[2] << endl; //<< " 0 0 0" << endl;
+ }
+
+ nodeStream.close();
+ nodeStreamTxt.close();
+
+ //-- create the .elem
+ // find the structural component "Elements" in the exclusive components
+ Component * cpt = pm->getComponentByName("Elements");
+ if (!cpt) {
+ cout << "Cannot find any component named \"Elements\". Exiting" << endl;
+ exit(-1);
+ }
+
+ // check if it is a correct one
+ if (!cpt->isExclusive() || !cpt->isInstanceOf("StructuralComponent")) {
+ cout << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
+ exit(-2);
+ }
+
+ // check if c is made of hexahedron
+ sc = (StructuralComponent *) cpt;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON)) {
+ cout << "Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON. Exiting" << endl;
+ exit(-3);
+ }
+
+ // open the elem file for writing
+ string elemFile = outputBase + ".elem";
+ std::ofstream elemStream;
+ elemStream.open(elemFile.c_str());
+ if (!elemStream.is_open()) {
+ cerr << "Error: cannot open file " << elemFile << endl;
+ exit(1);
+ }
+
+ // now, we have the right component, let's do some work...
+ Cell *c;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ c = (Cell *) sc->getCell(i);
+ if (c->getType()==StructureProperties::HEXAHEDRON) {
+ elemStream << c->getStructure(0)->getIndex()+1 << " "
+ << c->getStructure(1)->getIndex()+1 << " "
+ << c->getStructure(2)->getIndex()+1 << " "
+ << c->getStructure(3)->getIndex()+1 << " "
+ << c->getStructure(4)->getIndex()+1 << " "
+ << c->getStructure(5)->getIndex()+1 << " "
+ << c->getStructure(6)->getIndex()+1 << " "
+ << c->getStructure(7)->getIndex()+1 << " "
+ " 1 1 0 0 0 0" << endl;
+ }
+ }
+
+ elemStream.close();
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/pml2csv/CMakeLists.txt b/modeling/applications/pmltools/pml2csv/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/pml2csv/CMakeLists.txt
rename to modeling/applications/pmltools/pml2csv/CMakeLists.txt
diff --git a/modeling/applications/pmltools/pml2csv/pml2csv.cpp b/modeling/applications/pmltools/pml2csv/pml2csv.cpp
new file mode 100644
index 0000000..1efbca3
--- /dev/null
+++ b/modeling/applications/pmltools/pml2csv/pml2csv.cpp
@@ -0,0 +1,231 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+// -------------------- isIn ------------------------
+bool isIn(StructuralComponent *sc, Atom *a) {
+ unsigned int i=0;
+ bool found=false;
+ while (i<sc->getNumberOfStructures() && !found) {
+ found = (sc->getStructure(i)==a);
+ i++;
+ }
+ return found;
+}
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for(unsigned int i=0; i<sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for(int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if(equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if(find(name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+ for(iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-f", "" },
+ { "-select", "" },
+ { "-o", ""},
+ { "-d", "comma"},
+};
+
+const char* usage = "usage:\n"
+ "pml2csv -f=file.pml [-select=name] [-o=output.csv] [-d=space]\n"
+ "(Note no space around '=')\n"
+ "Where the flags can be any of: \n"
+ "-f the input pml document\n"
+ "-select the name of the structural component or cell to export as csv\n"
+ " (default = all atoms)\n"
+ "-o name of the csv output file (default=file.csv)\n"
+ "-d demiter can be either 'space' or 'comma' (default is 'comma')\n";
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// arguments
+string filename;
+string selected;
+string output;
+char separator;
+
+// -------------------- processArg ------------------------
+void processArg() {
+ filename = argVal["-f"];
+ output = argVal["-o"];
+ selected = argVal["-select"];
+
+ if (filename=="") {
+ cerr << "Argument error: -f argument is mandatory" << endl << usage << endl;
+ exit(-1);
+ }
+
+ if (output=="") {
+ // generate csv output filename
+ output=filename;
+ unsigned int pLast = output.rfind(".");
+ if (pLast != string::npos) {
+ output.erase(pLast);
+ output += ".csv";
+ } else
+ output="pml2csv-output.csv";
+ }
+
+ if (argVal["-d"]=="space") {
+ separator=' ';
+ } else {
+ separator=',';
+ }
+
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "pml2csv is converting ";
+ if (selected!="") {
+ cout << "component/cell " << selected;
+ } else {
+ cout << "all atoms";
+ }
+ cout << " of " << filename << " to CSV file " << output << " (delimiter is " << separator << ")"<< endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+ //argVal.print();
+
+ processArg();
+ printArg();
+
+ try {
+ // read the pml
+ cout << "-> please wait while reading " << filename;
+ PhysicalModel * pm = new PhysicalModel(filename.c_str());
+
+ // get the component
+ Component *cpt = NULL;
+ Cell *cellCpt = NULL;
+ StructuralComponent *atoms = NULL;
+
+ cout << "-> get ";
+ if (selected=="") {
+ cout << "all atoms" << endl;
+ atoms = pm->getAtoms();
+ } else {
+ cout << selected << endl;
+ cpt = pm->getComponentByName(selected);
+ if (!cpt) {
+ // try harder: look for a cell
+ Structure *s = pm->getStructureByName(selected);
+ if (s && s->isInstanceOf("Cell")) {
+ cellCpt = (Cell*) s;
+ } else
+ throw PMLAbortException("No components/cells named " + selected);
+ }
+ }
+
+ // now extract all atoms
+ StructuralComponent *selectedAtoms = new StructuralComponent(NULL, "selected atoms");
+ if (atoms) {
+ for (unsigned int j=0; j<atoms->getNumberOfStructures(); j++)
+ selectedAtoms->addStructureIfNotIn(atoms->getStructure(j));
+ } else if (cpt) {
+ if (cpt->isInstanceOf("StructuralComponent") && ((StructuralComponent *)cpt)->composedBy()==StructuralComponent::CELLS) {
+ for (unsigned int i=0; i<cpt->getNumberOfCells(); i++) {
+ Cell *c=cpt->getCell(i);
+ for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
+ selectedAtoms->addStructureIfNotIn(c->getStructure(j));
+ }
+ } else {
+ StructuralComponent *sc=(StructuralComponent *)cpt;
+ for (unsigned int j=0; j<sc->getNumberOfStructures(); j++)
+ selectedAtoms->addStructureIfNotIn(sc->getStructure(j));
+ }
+ } else {
+ for (unsigned int j=0; j<cellCpt->getNumberOfStructures(); j++)
+ selectedAtoms->addStructureIfNotIn(cellCpt->getStructure(j));
+ }
+ cout << "-> found " << selectedAtoms->getNumberOfStructures() << " atoms to export as CSV" << endl;
+
+ // save the result
+ cout << "-> please wait while saving " << output << " " << endl;
+ ofstream outputFile(output.c_str());
+ outputFile << "Atom#" << separator << "x" << separator << "y" << separator << "z" << endl;
+ double pos[3];
+ for (unsigned int i=0; i<selectedAtoms->getNumberOfStructures(); i++) {
+ Atom *a = (Atom *)selectedAtoms->getStructure(i);
+ a->getPosition(pos);
+ outputFile << a->getIndex() << separator << pos[0] << separator << pos[1] << separator << pos[2] << endl;
+ }
+ outputFile.close();
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/pml2ghs3d/CMakeLists.txt b/modeling/applications/pmltools/pml2ghs3d/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/pml2ghs3d/CMakeLists.txt
rename to modeling/applications/pmltools/pml2ghs3d/CMakeLists.txt
diff --git a/modeling/applications/pmltools/pml2ghs3d/pml2ghs3d.cpp b/modeling/applications/pmltools/pml2ghs3d/pml2ghs3d.cpp
new file mode 100644
index 0000000..ff0bcf5
--- /dev/null
+++ b/modeling/applications/pmltools/pml2ghs3d/pml2ghs3d.cpp
@@ -0,0 +1,217 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+
+// the input .obj file
+PhysicalModel *pm;
+string pmlFile;
+string meshFile;
+bool reorder;
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for(unsigned int i=0; i<sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for(int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if(equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if(find(name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+ for(iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-f", "none" },
+ { "-o", "pml2ghs3d-output.mesh" },
+ { "-reorder", "false"},
+};
+
+const char* usage = "usage:\n"
+ "pml2ghs3d -f=document.pml [-o=output] [-reorder=false]\n"
+ "Transform a PML document containing an 'Elements' (list of triangles) exclusive structural component to a .mesh (readable in GHS3D), and reorder the index if reorder is true (needed if atom id are not successive number)\n"
+ "(Note no space around '=')\n"
+ "Where the flags can be any of: \n"
+ "f (input pml document), o (output .mesh file name), reorder (true or false, default is false) \n";
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// -------------------- processArg ------------------------
+void processArg() {
+ pmlFile = argVal["-f"];
+ meshFile = argVal["-o"];
+ reorder = (argVal["-reorder"]=="false")?false:true;
+ if (pmlFile=="none") {
+ cerr << "Argument error: -f is mandatory" << usage << endl;
+ exit(-1);
+ }
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "pml2ghs3d generating " << meshFile << " from " << pmlFile << ", with" << (reorder?"":"out") << " reordering" << endl;
+ cout << endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+ //argVal.print();
+
+ processArg();
+ printArg();
+
+ try {
+ pm = new PhysicalModel(pmlFile.c_str());
+
+ //-- create the .mesh
+ std::ofstream meshStream;
+ meshStream.open(meshFile.c_str());
+ if (!meshStream.is_open()) {
+ cerr << "Error: cannot open file " << meshFile << endl;
+ exit(1);
+ }
+
+ // write the vertices
+ meshStream << " MeshVersionFormatted" << endl;
+ meshStream << " Dimension" << endl;
+ meshStream << " 3" << endl;
+ meshStream << " Vertices" << endl;
+ meshStream << " " << pm->getNumberOfAtoms() << endl;
+
+ StructuralComponent *sc = pm->getAtoms();
+
+ Atom *a;
+ double pos[3];
+ meshStream.setf(ios::fixed, ios::floatfield); // set fixed floating format
+ meshStream.precision(6);
+ map<unsigned int,unsigned int> atomIdToNodeId;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ a = (Atom *) sc->getStructure(i);
+ a->getPosition(pos);
+ meshStream << "\t\t" << pos[0] << " " << pos[1] << " \t\t\t " << pos[2] << " 0\t\t\t\t\t\t" << endl;
+ atomIdToNodeId.insert(pair<unsigned int,unsigned int>(a->getIndex(),i+1));
+ }
+
+ meshStream << endl;
+ meshStream << " Triangles" << endl;
+
+ //-- convert the triangles
+ Component * cpt = pm->getComponentByName("Elements");
+ if (!cpt) {
+ cerr << "Cannot find any component named \"Elements\". Exiting" << endl;
+ exit(-1);
+ }
+
+ // check if it is a correct one
+ if (!cpt->isExclusive() || !cpt->isInstanceOf("StructuralComponent")) {
+ cerr << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
+ exit(-2);
+ }
+
+ // check if c is made of hexahedron
+ sc = (StructuralComponent *) cpt;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::TRIANGLE)) {
+ cerr << "Cannot translate the \"Elements\" component: does not contains any cell geometric type TRIANGLE. Exiting" << endl;
+ exit(-3);
+ }
+
+ // now, we have the right component, let's do some work...
+ meshStream << " " << sc->getNumberOfStructures() << endl;
+
+ Cell *c;
+ map<unsigned int,unsigned int>::iterator result;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ c = (Cell *) sc->getCell(i);
+ if (c->getType()==StructureProperties::TRIANGLE) {
+ if (!reorder) {
+ meshStream << c->getStructure(0)->getIndex()+1 << " "
+ << c->getStructure(1)->getIndex()+1 << " "
+ << c->getStructure(2)->getIndex()+1
+ << " 1" << endl;
+ } else {
+ for (unsigned int j=0; j<3; j++) {
+ result=atomIdToNodeId.find(c->getStructure(j)->getIndex());
+ if (result==atomIdToNodeId.end()) {
+ cerr << "Cell #" << c->getIndex() << ": cannot find atom#" << c->getStructure(j)->getIndex() << " in the map. Exiting." << endl;
+ exit(-4);
+ } else {
+ meshStream << result->second << " ";
+ }
+ }
+ meshStream << " 1" << endl;
+ }
+ }
+ }
+ meshStream << endl;
+ meshStream << " End" << endl;
+ meshStream << endl;
+
+ meshStream.close();
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/pml2wrl/CMakeLists.txt b/modeling/applications/pmltools/pml2wrl/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/pml2wrl/CMakeLists.txt
rename to modeling/applications/pmltools/pml2wrl/CMakeLists.txt
diff --git a/modeling/applications/pmltools/pml2wrl/pml2wrl.cpp b/modeling/applications/pmltools/pml2wrl/pml2wrl.cpp
new file mode 100644
index 0000000..102db7e
--- /dev/null
+++ b/modeling/applications/pmltools/pml2wrl/pml2wrl.cpp
@@ -0,0 +1,328 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+#include <string.h> // strcmp
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <pml/MultiComponent.h>
+//#include <map>
+
+// variables
+string pmlFile;
+string wrlFile;
+string pgmName;
+std::ofstream outputFile;
+PhysicalModel *pm;
+Cell *c;
+bool vrml2;
+vector<string> componentNames;
+
+/** the elements classified by a rank,
+* in an increasing way
+*/
+map <unsigned int, unsigned int> rankA;
+map <unsigned int, unsigned int>::iterator it;
+unsigned int rank;
+
+//----------------------- processParam --------------------
+void processParam(int argc, char **argv) {
+
+ // get the name of the program
+ pgmName = argv[0];
+
+ pmlFile = "none";
+ wrlFile = "";
+ vrml2 = false;
+
+ if (argc<6) {
+ cout << "Wrong number of argument (at least 4 needed):" << endl;
+ cout << "pml2wrl -f document.pml -o document.wrl [-use SCName]* [-vrml2]" << endl;
+ cout << "If no SC name are given, then 'Regions' is used by default." << endl;
+ cout << "Default output is vrml v1.0 ASCII" << endl;
+ exit(-1);
+ }
+
+ for (int i=1; i<argc; i++) {
+ if (strcmp(argv[i],"-f")==0) { // get the input pml file name
+ i++;
+ pmlFile = argv[i];
+ if (pmlFile=="none") {
+ cout << "Argument error: -f is mandatory" << endl;
+ exit(-1);
+ }
+ }
+
+ if (strcmp(argv[i],"-o")==0) { // output pdo
+ i++;
+ wrlFile = argv[i];
+ wrlFile += ".wrl";
+ // open the wrl file for writing
+ outputFile.open(wrlFile.c_str());
+ if (!outputFile.is_open()) {
+ cout << "Argument error: cannot open file " << wrlFile << endl;
+ exit(1);
+ }
+ // set fixed floating format
+ outputFile.setf(ios::fixed, ios::floatfield);
+ outputFile.precision(6);
+ }
+
+ if (strcmp(argv[i],"-use")==0) {
+ i++;
+ componentNames.push_back(argv[i]);
+ }
+
+ if (strcmp(argv[i],"-vrml2")==0) {
+ vrml2=true;
+ }
+
+ }
+
+ if (componentNames.size()==0)
+ componentNames.push_back("Regions");
+
+}
+
+//----------------------- printParam ---------------------
+void printParam() {
+ cout << pgmName << " generating " << wrlFile << " from " << pmlFile;
+ cout << " using components ";
+ for (unsigned int i=0; i<componentNames.size(); i++)
+ cout << componentNames[i] << "," ;
+ cout << endl;
+}
+
+//----------------------- printMaterial -----------------
+void printMaterial(Cell*c) {
+
+ double *color;
+
+ // get the color of the region
+ color = ((StructuralComponent*)c)->getColor();
+ outputFile << "\t" << "Material {" << endl;
+
+ outputFile << "\t" << "\t" << "diffuseColor "<< color[0] << " " << color[1] << " " << color[2] << endl;
+ outputFile << "\t" << "\t" << "ambientIntensity 0" << endl;
+ outputFile << "\t" << "\t" << "specularColor 0.0 0.0 0.0" << endl;
+ outputFile << "\t" << "\t" << "shininess 0.0 " << endl;
+ outputFile << "\t" << "\t" << "transparency 0.0 " << endl;
+ outputFile << "\t" << "}" << endl;
+ outputFile << endl;
+
+}
+
+//----------------------- printCoordinates -----------------
+void printCoordinates(Cell *c) {
+
+ Atom *a;
+ double pos[3];
+ unsigned int index;
+
+ for (unsigned int i=0; i<c->getNumberOfStructures(); i++) {
+ a = (Atom*)c->getStructure(i);
+ // the points are indexed from 0 !!
+ index = a->getIndex();
+ bool isInserted = rankA.insert(pair<unsigned int, unsigned int>(index, rank)).second;
+ if (isInserted) {
+ rank++;
+ a->getPosition(pos);
+ outputFile << "\t" << "\t" << "\t" << "\t" << pos[0] << " " << pos[1] << " " << pos[2] << "," << endl;
+ }
+ }
+
+ // Warning:the axes are differents with Blender
+// outputFile << "\t" << "\t" << "\t" << "\t" << pos[0] << " " << pos[2] << " " << pos[1] << "," << endl;
+
+}
+
+
+
+//------------------------ printSurfaces -------------------
+void printSurfaces(Cell *c) {
+
+ outputFile << "\t\t\t\t";
+ for (int k=c->getNumberOfStructures()-1; k>=0; k--) {
+ // look for the index of the elements and
+ // take the corresponding rank
+ it = rankA.find(c->getStructure(k)->getIndex());
+ if (it==rankA.end()) {
+ cout << "ERROR c#" << c->getIndex() << ": cannot find Atom#" << c->getStructure(0)->getIndex() << endl;
+ } else {
+ outputFile << it->second << ", ";
+ }
+ }
+ outputFile << " -1," << endl;
+
+}
+
+// ------------------------ Prologue for VRML2 ---------------------------
+void vrml2Prologue() {
+ outputFile << "# pml2wrl" << endl;
+ outputFile << " Background {\n"
+ " skyColor [1.000000 1.000000 1.000000, ]\n"
+ " }\n"
+ " Viewpoint {\n"
+ " fieldOfView 0.523599\n"
+ " position 222.803372 287.424506 199.848172\n"
+ " description \"Default View\"\n"
+ " orientation 0.590285 -0.769274 -0.244504 0.987861\n"
+ " }\n"
+ " NavigationInfo {\n"
+ " type [\"EXAMINE\",\"FLY\"]\n"
+ " speed 4.000000\n"
+ " headlight FALSE"
+ " }\n"
+ "\n"
+ " DirectionalLight { ambientIntensity 1 intensity 0 # ambient light\n"
+ " color 1.000000 1.000000 1.000000 }\n"
+ "\n"
+ " DirectionalLight {\n"
+ " direction -0.577350 -0.577350 -0.577350\n"
+ " color 1.000000 1.000000 1.000000\n"
+ " intensity 1.000000\n"
+ " on TRUE\n"
+ " }\n"
+ " Transform {\n"
+ " translation 0 0 0\n"
+ " rotation 0 0 1 0\n"
+ " scale 1 1 1\n"
+ " children [\n"
+ " Shape {\n"
+ " appearance Appearance {\n"
+ " material Material {\n"
+ " ambientIntensity 0\n"
+ " diffuseColor 0.8 0.2 0.2\n"
+ " specularColor 0 0 0\n"
+ " shininess 0.0078125\n"
+ " transparency 0\n"
+ " }\n"
+ " }\n"
+ " geometry IndexedFaceSet {\n"
+ " solid FALSE\n";
+ outputFile << " coord DEF pml2wrl Coordinate {" << endl;
+
+
+}
+
+void vrml1Prologue(StructuralComponent *sc) {
+ outputFile << "DEF pml2wrl Separator {\n";
+ printMaterial((Cell*)sc->getCell(0));
+ outputFile << "\tMaterialBinding { value OVERALL }\n"
+ "\tShapeHints { shapeType SOLID vertexOrdering CLOCKWISE }\n"
+ "\tSeparator {\n"
+ "\tCoordinate3 {\n";
+}
+
+//------------------------ main ---------------------------
+int main(int argc, char **argv) {
+
+ StructuralComponent *sc;
+
+ processParam(argc, argv);
+ printParam();
+
+ // line mandatory
+ if (vrml2) {
+ outputFile << "#VRML V2.0 utf8" << endl;//"#VRML V1.0 ascii" << endl;
+ outputFile << "#WARNING: pml2wrl may have inverted backface culling..." << endl;
+ } else
+ outputFile << "#VRML V1.0 ascii" << endl;
+
+ try {
+ cout << "-> Please wait while reading pml" << endl;
+ pm = new PhysicalModel(pmlFile.c_str());
+
+ cout << "-> Please wait while converting to wrl" << endl;
+
+ for (unsigned int cptId=0; cptId<componentNames.size(); cptId++) {
+ // find the multiComponent component
+ Component *cpt = pm->getComponentByName(componentNames[cptId]);
+ if (!cpt) {
+ cout << "Cannot find any component named \"" << componentNames[cptId] << "\". Skipping" << endl;
+ } else {
+ // check if it is a correct one
+ if (!cpt->isInstanceOf("StructuralComponent")) {
+ cout << "Cannot translate the \"" << componentNames[cptId] << "\" component: not a structural component. Skipping" << endl;
+ } else {
+ sc = (StructuralComponent*)cpt;
+
+ // prologue
+ if (vrml2)
+ vrml2Prologue();
+ else
+ vrml1Prologue(sc);
+
+ // nodes
+ outputFile << "\tpoint [\n";
+
+ // build rankA
+ rank=0;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ c = (Cell*)sc->getCell(i);
+ printCoordinates(c);
+ }
+ outputFile << "\t\t\t]" << endl;
+ outputFile << "\t\t}" << endl;
+
+ if (!vrml2) {
+ outputFile << "\tIndexedFaceSet {" << endl;
+ }
+
+ // print facets
+ outputFile << "\tcoordIndex [" << endl;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ c = (Cell*)sc->getCell(i);
+ printSurfaces(c);
+ }
+
+ outputFile <<"\t\t\t]" << endl;
+ outputFile <<"\t\t}" << endl;
+ outputFile <<"\t}" << endl;
+
+ // end
+ if (vrml2) {
+ outputFile <<" ]" << endl;
+ outputFile <<" }" << endl;
+ } else {
+ outputFile << "}" << endl;
+ }
+ outputFile << endl;
+ }
+ }
+ }
+
+ outputFile.close();
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException : Physical model aborted:" << endl;
+ cout << ae.what() << endl;
+ }
+
+
+}
diff --git a/modeling/libraries/pml/tools/pmldiff/CMakeLists.txt b/modeling/applications/pmltools/pmldiff/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/pmldiff/CMakeLists.txt
rename to modeling/applications/pmltools/pmldiff/CMakeLists.txt
diff --git a/modeling/applications/pmltools/pmldiff/pmldiff.cpp b/modeling/applications/pmltools/pmldiff/pmldiff.cpp
new file mode 100644
index 0000000..76d8286
--- /dev/null
+++ b/modeling/applications/pmltools/pmldiff/pmldiff.cpp
@@ -0,0 +1,190 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <math.h>
+
+#include <pml/PhysicalModel.h>
+#include <pml/StructuralComponent.h>
+#include <lml/Loads.h>
+#include <lml/Translation.h>
+
+string srcFile;
+string destFile;
+string output;
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for(unsigned int i=0; i<sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for(int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if(equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if(find(name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+ for(iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-src", "none" },
+ { "-dest", "none" },
+ { "-o", "pmldiff-output.lml" },
+};
+
+const char* usage = "usage:\n"
+ "pmldiff -src=f1.pml -dest=f2.pml [-o=diff.lml]\n"
+ "Create a LML document which contains the translations needed to transform f1.pml to f2.pml\n"
+ "(Note no space around '=')\n"
+ "Where mandatory flags are: \n"
+ "src (source pml document), dest (destination pml document)\n"
+ "The optional o flag allows one to specify the resulting LML file name\n";
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// -------------------- processArg ------------------------
+void processArg() {
+ srcFile = argVal["-src"];
+ destFile = argVal["-dest"];
+ output = argVal["-o"];
+ if (srcFile=="none" || destFile == "none") {
+ cerr << "Argument error: -src and -dest flags are mandatory" << usage << endl;
+ exit(-1);
+ }
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "pml2diff generating " << output << ", tranformation of " << srcFile << " to " << destFile << endl;
+ cout << endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+
+ processArg();
+ printArg();
+
+ try {
+ PhysicalModel *src = new PhysicalModel(srcFile.c_str());
+ PhysicalModel *dest = new PhysicalModel(destFile.c_str());
+
+ //-- create the loads
+ Loads *transform = new Loads();
+
+ //-- compute the differences
+ StructuralComponent *srcA = src->getAtoms();
+ Atom *a1, *a2;
+ double srcPos[3];
+ double destPos[3];
+ double translation[3];
+ double value;
+
+ for (unsigned int i=0; i<srcA->getNumberOfStructures(); i++) {
+ // get the src position
+ a1 = (Atom *) srcA->getStructure(i);
+ a1->getPosition(srcPos);
+ // get the dest position
+ if ((a2 = dest->getAtom(a1->getIndex())) == NULL) {
+ cerr << "Error cannot find atom #" << a1->getIndex() << " in " << destFile << endl;
+ exit(1);
+ }
+ a2->getPosition(destPos);
+ // compute the translation
+ Translation *t = new Translation();
+ value = 0.0;
+ for (unsigned int j=0; j<3; j++) {
+ translation[j] = destPos[j] - srcPos[j];
+ value += translation[j]*translation[j];
+ }
+ value = sqrt(value);
+ // if atoms are not at the same place
+ if (value > 1e-12) {
+ // normalize translation
+ for (unsigned int j=0; j<3; j++)
+ translation[j] /= value;
+
+ t->setDirection(translation[0], translation[1], translation[2]);
+ t->addTarget(a1->getIndex());
+ t->addValueEvent(0.0, 0.0);
+ t->addValueEvent(value, 1.0);
+
+ transform->addLoad(t);
+ }
+ }
+
+ // write the transformation in a file
+ std::ofstream loadStream;
+ loadStream.open(output.c_str());
+ if (!loadStream.is_open()) {
+ cerr << "Error: cannot open file " << output << endl;
+ exit(1);
+ }
+ transform->xmlPrint(loadStream);
+ loadStream << "<!-- this file (" << output << ") was generated by pml2diff and is the tranformation from " << srcFile << " to " << destFile << " -->" << endl;
+ loadStream.close();
+
+
+ } catch(PMLAbortException ae) {
+ cerr << "AbortException: Physical model aborted:" << endl ;
+ cerr << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/refineMesh/CMakeLists.txt b/modeling/applications/pmltools/refineMesh/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/refineMesh/CMakeLists.txt
rename to modeling/applications/pmltools/refineMesh/CMakeLists.txt
diff --git a/modeling/applications/pmltools/refineMesh/refineMesh.cpp b/modeling/applications/pmltools/refineMesh/refineMesh.cpp
new file mode 100644
index 0000000..35585bb
--- /dev/null
+++ b/modeling/applications/pmltools/refineMesh/refineMesh.cpp
@@ -0,0 +1,552 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+
+/// global variables
+// -------------------- the physical model being processed ------------------------
+PhysicalModel * pm;
+
+
+// -------------------- All facets ------------------------
+class Connection;
+vector <Connection *> allConnections;
+vector <Atom *> newAtoms;
+
+/** class facet
+ *
+ * a connection can either be a line, triangular or quadrangular
+ *
+ * 1) LINE (line between two atoms in an element)
+ *
+ * 0 ----+---- 1
+ * n0
+ *
+ * 1 new atom can be created
+ * - n0 (center)
+ *
+ *
+ *
+ * 2) TRIANGLE (viewed from outside, normal pointing toward user)
+ *
+ * 2
+ * / \
+ * / \
+ * n2 + n0 + n3
+ * / x \
+ * / \
+ * 0-----+-----1
+ * n1
+ * 4 new atoms can be created:
+ * - n0 (center),
+ * - n1 (between 0 and 1),
+ * - n2 (between 0 and 2) and
+ * - n3 (between 1 and 2)
+ *
+ *
+ *
+ * QUAD (viewed from outside, normal pointing toward user)
+ * n4
+ * 3-----+-----2
+ * | |
+ * | |
+ * n2 + x + n3
+ * | n0 |
+ * | |
+ * 0-----+-----1
+ * n1
+ * 5 new atoms can be created:
+ * - n0 (center),
+ * - n1 (between 0 and 1),
+ * - n2 (between 0 and 3),
+ * - n3 (between 1 and 2) and
+ * - n4 (between 2 and 3)
+ */
+class Connection {
+public:
+ /// create a line connection using the given ptrs
+ Connection(Atom *, Atom *);
+
+ /// create a triangular connection using the given ptrs
+ Connection(Atom *, Atom *, Atom *);
+
+ /// create a quad connection using the given ptrs
+ Connection(Atom *, Atom *, Atom *, Atom *);
+
+ /// destructor
+ virtual ~Connection();
+
+ /// if it is the same (equivalent) facet, increment used (return true if equivalence)
+ friend bool equivalent(Connection *, Connection *);
+
+ /// print on stdout
+ void debug();
+
+ /// get the number of time it is being used
+ unsigned int getUsed() const;
+
+ /// get composing atom by index
+ Atom * getAtom(unsigned int);
+
+ /// get new atom in the center (create it if not already there
+ Atom * getCenter();
+
+ /// compute coordinates of the center of any kind of cell
+ static void getCenter(Cell *c, double center[3]);
+
+
+private:
+ /// is this atom index present in this connection (no check on the order)
+ bool isIn(Atom *) const;
+
+ /// initialization
+ void init();
+
+ /// the connection equivalent cell
+ Cell *myCell;
+
+ /// nr of times the connection is used
+ unsigned int used;
+
+ /// connection center
+ Atom *n0;
+
+ /// current atom index for new atoms
+ static unsigned int atomIndex;
+
+};
+
+unsigned int Connection::atomIndex = 20000;
+
+// -------------------- getCenter ------------------------
+void Connection::getCenter(Cell *c, double center[3]) {
+ double pos[3];
+ unsigned int size = c->getNumberOfStructures();
+
+ for (unsigned int j=0; j<3; j++)
+ center[j] = 0.0;
+
+ for (unsigned int i=0; i<size; i++) {
+ ((Atom *)c->getStructure(i))->getPosition(pos);
+ for (unsigned int j=0; j<3; j++)
+ center[j] += pos[j];
+ }
+
+ for (unsigned int j=0; j<3; j++)
+ center[j] /= ((double)size);
+}
+
+// -------------------- constructor/destructor ------------------------
+Connection::Connection(Atom *a, Atom *b) {
+ myCell = new Cell(pm, StructureProperties::LINE);
+ myCell->addStructureIfNotIn(a);
+ myCell->addStructureIfNotIn(b);
+ init();
+}
+Connection::Connection(Atom *a, Atom *b, Atom *c) {
+ myCell = new Cell(pm, StructureProperties::TRIANGLE);
+ myCell->addStructureIfNotIn(a);
+ myCell->addStructureIfNotIn(b);
+ myCell->addStructureIfNotIn(c);
+ init();
+}
+
+Connection::Connection(Atom *a, Atom *b, Atom *c, Atom *d) {
+ myCell = new Cell(pm, StructureProperties::QUAD);
+ myCell->addStructureIfNotIn(a);
+ myCell->addStructureIfNotIn(b);
+ myCell->addStructureIfNotIn(c);
+ myCell->addStructureIfNotIn(d);
+ init();
+}
+
+Connection::~Connection() {
+ delete myCell;
+}
+
+void Connection::init() {
+ used = 1;
+ // create center
+ double pos[3];
+ getCenter(myCell, pos);
+ n0 = new Atom(pm, Connection::atomIndex, pos);
+ Connection::atomIndex++;
+}
+
+// -------------------- debug ------------------------
+void Connection::debug() {
+ switch (myCell->getNumberOfStructures()) {
+ case 2:
+ cout << "line <";
+ break;
+ case 3:
+ cout << "triangle <";
+ break;
+ case 4:
+ cout << "quad <";
+ break;
+ default:
+ cout << "unknown connection <";
+ break;
+ }
+ unsigned int i;
+ for (i=0; i<myCell->getNumberOfStructures(); i++)
+ cout << myCell->getStructure(i)->getIndex() << ",";
+ cout << myCell->getStructure(i)->getIndex() << "> used " << used << " times" << endl;
+}
+
+// -------------------- getAtom ------------------------
+Atom * Connection::getAtom(unsigned int id) {
+ return ((Atom*)myCell->getStructure(id));
+}
+
+// -------------------- equivalent ------------------------
+bool equivalent(Connection *f1, Connection *f2) {
+ if (f1->myCell->getNumberOfStructures() != f2->myCell->getNumberOfStructures()) {
+ return false;
+ } else {
+ unsigned int i=0;
+ unsigned int equi=0;
+ while (i<f1->myCell->getNumberOfStructures() && f2->isIn(f1->getAtom(i))) {
+ i++;
+ }
+ if (i==f1->myCell->getNumberOfStructures()) {
+ f1->used++;
+ equi++;
+ }
+
+ return (i==f1->myCell->getNumberOfStructures());
+ }
+}
+
+// -------------------- isIn ------------------------
+bool Connection::isIn(Atom *a) const {
+ unsigned int i=0;
+ while (i<myCell->getNumberOfStructures() && a!=myCell->getStructure(i))
+ i++;
+ return (i!=myCell->getNumberOfStructures());
+}
+
+
+// -------------------- getUsed ------------------------
+unsigned int Connection::getUsed() const {
+ return used;
+}
+
+// -------------------- getCenter ------------------------
+Atom * Connection::getCenter() {
+ return n0;
+}
+
+// -------------------- newTetra ------------------------
+Cell * newTetra(Atom *a, Atom *b, Atom *c, Atom *d) {
+ Cell *cell = new Cell(pm, StructureProperties::TETRAHEDRON);
+ cell->addStructureIfNotIn(a);
+ cell->addStructureIfNotIn(b);
+ cell->addStructureIfNotIn(c);
+ cell->addStructureIfNotIn(d);
+ return cell;
+}
+
+// -------------------- newHexa ------------------------
+Cell * newHexa(Atom *a, Atom *b, Atom *c, Atom *d, Atom *e, Atom *f, Atom *g, Atom *h) {
+ Cell *cell = new Cell(pm, StructureProperties::HEXAHEDRON);
+ cell->addStructureIfNotIn(a);
+ cell->addStructureIfNotIn(b);
+ cell->addStructureIfNotIn(c);
+ cell->addStructureIfNotIn(d);
+ cell->addStructureIfNotIn(e);
+ cell->addStructureIfNotIn(f);
+ cell->addStructureIfNotIn(g);
+ cell->addStructureIfNotIn(h);
+ return cell;
+}
+
+// -------------------- insert ------------------------
+// check if there is already an equivalent (existing) facet
+// if not insert it in the list
+// return the connection (if not inserted, return the equivalent connection already in the list)
+Connection * insert(Connection *f) {
+ vector <Connection *>::iterator it;
+
+ // look into allConnections for equivalence
+ it = allConnections.begin();
+ while (it!=allConnections.end() && !equivalent((*it),f))
+ it++;
+
+ // not found => insert
+ if (it==allConnections.end()) {
+ allConnections.push_back(f);
+ Atom *a = f->getCenter();
+ pm->addAtom(a);
+ newAtoms.push_back(a);
+ return f;
+ } else {
+ return (*it);
+
+ }
+
+}
+
+// ------------- getNewCenteredAtom ------------------
+Atom * getNewCenteredAtom(Cell *c, unsigned int atomIndex) {
+ double center[3];
+ Atom *a;
+
+ Connection::getCenter(c,center);
+ a = new Atom(pm, atomIndex, center);
+ pm->addAtom(a);
+ newAtoms.push_back(a);
+
+ return a;
+}
+
+// -------------------- refine ------------------------
+StructuralComponent * refine(StructuralComponent *sc) {
+ StructuralComponent *r = new StructuralComponent(NULL, "Refined Elements");
+
+ // create a new sc with refined elements:
+ // for each element
+ // create n sub-elements (n=8 for hexa, n=4 for tetra)
+ // insert his sub-elements in the new SC
+ unsigned int atomIndex = 10000;
+ Atom *a;
+ Cell *c;
+ for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
+ // c is an hexahedron or a tetrahedron
+ c = sc->getCell(i);
+
+ // Connections have to be described in anticlockwise (trigonometrywise) when
+ // looking at them from outside the object
+ switch(c->getType()) {
+ case StructureProperties::TETRAHEDRON: {
+ // tetrahedron are defined as follow:
+ // 3
+ // /| \ So to generate the connection list,
+ // / | \ we just have to loop on all the
+ // 1..|...\ 2 tetrahedron and add the corresponding 4 facets :
+ // \ | / f0=0,1,2 f2=0,3,1
+ // \ | / f1=0,2,3 f3=2,1,3
+ // \|/
+ // 0
+ //insert(new Connection(c->getStructure(0), c->getStructure(1), c->getStructure(2)));
+ //insert(new Connection(c->getStructure(0), c->getStructure(2), c->getStructure(3)));
+ //insert(new Connection(c->getStructure(0), c->getStructure(3), c->getStructure(1)));
+ //insert(new Connection(c->getStructure(2), c->getStructure(1), c->getStructure(3)));
+ // subdividing facets in case of tetrahedron is not needed... (see part2 of this algo)
+ //
+ // So to generate a refined mesh, we just have to create one new atom in
+ // the center and 4 new tetrahedrons
+ //
+ // 1. get a new atom in the center of the tetrahedron
+ a = getNewCenteredAtom(c, atomIndex++);
+ // 2. get proxy for atoms
+ Atom *a0 = (Atom *) c->getStructure(0);
+ Atom *a1 = (Atom *) c->getStructure(1);
+ Atom *a2 = (Atom *) c->getStructure(2);
+ Atom *a3 = (Atom *) c->getStructure(3);
+ // 3. add the 4 new tetrahedrons
+ r->addStructure(newTetra( a, a1, a2, a3));
+ r->addStructure(newTetra(a0, a, a2, a3));
+ r->addStructure(newTetra(a0, a1, a, a3));
+ r->addStructure(newTetra(a0, a1, a2, a));
+ break;
+ }
+
+ case StructureProperties::HEXAHEDRON: {
+ // hexahedron are defined as follow:
+ // 2-------------6
+ // / \ . \ So to generate the connection list,
+ // / \ / \ we just have to loop on all the
+ // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
+ // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
+ // \ / \ / f1=0,4,7,3 f4=1,2,6,5
+ // \ / . / f2=0,1,5,4 f5=4,5,6,7
+ // 0-------------4
+ //
+ // So to generate a refined mesh, 19 new atoms have to be generated:
+ // 6 center of each facet
+ // + center of hexahedron
+ // + 12 center of lines
+ //
+ // get the 8 atom proxys
+ Atom *a0 = (Atom *) c->getStructure(0);
+ Atom *a1 = (Atom *) c->getStructure(1);
+ Atom *a2 = (Atom *) c->getStructure(2);
+ Atom *a3 = (Atom *) c->getStructure(3);
+ Atom *a4 = (Atom *) c->getStructure(4);
+ Atom *a5 = (Atom *) c->getStructure(5);
+ Atom *a6 = (Atom *) c->getStructure(6);
+ Atom *a7 = (Atom *) c->getStructure(7);
+ // 1. insert all 6 facets
+ Connection *cf0 = insert(new Connection(a0, a3, a2, a1));
+ Connection *cf1 = insert(new Connection(a0, a4, a7, a3));
+ Connection *cf2 = insert(new Connection(a0, a1, a5, a4));
+ Connection *cf3 = insert(new Connection(a3, a7, a6, a2));
+ Connection *cf4 = insert(new Connection(a1, a2, a6, a5));
+ Connection *cf5 = insert(new Connection(a4, a5, a6, a7));
+ // 2. insert all 12 lines
+ Connection *cl0 = insert(new Connection(a0, a1));
+ Connection *cl1 = insert(new Connection(a1, a2));
+ Connection *cl2 = insert(new Connection(a2, a3));
+ Connection *cl3 = insert(new Connection(a3, a0));
+ Connection *cl4 = insert(new Connection(a4, a5));
+ Connection *cl5 = insert(new Connection(a5, a6));
+ Connection *cl6 = insert(new Connection(a6, a7));
+ Connection *cl7 = insert(new Connection(a7, a4));
+ Connection *cl8 = insert(new Connection(a0, a4));
+ Connection *cl9 = insert(new Connection(a1, a5));
+ Connection *cl10 = insert(new Connection(a2, a6));
+ Connection *cl11 = insert(new Connection(a3, a7));
+ // get a new atom in the center of the tetrahedron
+ a = getNewCenteredAtom(c, atomIndex++);
+ // get all the centers
+ Atom *f0 = cf0->getCenter();
+ Atom *f1 = cf1->getCenter();
+ Atom *f2 = cf2->getCenter();
+ Atom *f3 = cf3->getCenter();
+ Atom *f4 = cf4->getCenter();
+ Atom *f5 = cf5->getCenter();
+ Atom *l0 = cl0->getCenter();
+ Atom *l1 = cl1->getCenter();
+ Atom *l2 = cl2->getCenter();
+ Atom *l3 = cl3->getCenter();
+ Atom *l4 = cl4->getCenter();
+ Atom *l5 = cl5->getCenter();
+ Atom *l6 = cl6->getCenter();
+ Atom *l7 = cl7->getCenter();
+ Atom *l8 = cl8->getCenter();
+ Atom *l9 = cl9->getCenter();
+ Atom *l10 = cl10->getCenter();
+ Atom *l11 = cl11->getCenter();
+ // insert the 8 new hexahedrons
+ r->addStructure(newHexa(f2, l9, f4, a, l4, a5, l5, f5));
+ r->addStructure(newHexa(l8, f2, a, f1, a4, l4, f5, l7));
+ r->addStructure(newHexa(l0, a1, l1, f0, f2, l9, f4, a));
+ r->addStructure(newHexa(a0, l0, f0, l3, l8, f2, a, f1));
+ r->addStructure(newHexa( a, f4,l10, f3, f5, l5, a6, l6));
+ r->addStructure(newHexa(f1, a, f3,l11, l7, f5, l6, a7));
+ r->addStructure(newHexa(f0, l1, a2, l2, a, f4,l10, f3));
+ r->addStructure(newHexa(l3, f0, l2, a3, f1, a, f3, l11));
+ break;
+ }
+
+ default:
+ break;
+ }
+ }
+
+ // return the SC
+ return r;
+}
+
+
+// -------------------- newAtomSC ------------------------
+StructuralComponent * newAtomSC() {
+ StructuralComponent *na = new StructuralComponent(NULL, "new atoms");
+
+ for (unsigned int i=0; i<newAtoms.size(); i++) {
+ na->addStructure(newAtoms[i]);
+ }
+
+ // return the SC
+ return na;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=2) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml" << endl;
+ cout << "subdivide structural component 'Elements' (each tetra is subdivided in 4 sub-tetra, each hexa is subdivided in 4 sub-hexa), output to: file-refined.pml" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ pm = new PhysicalModel(filename.c_str());
+
+ // find the structural component "Elements" in the exclusive components
+ Component * c = pm->getComponentByName("Elements");
+ if (!c) {
+ cout << "Cannot find any component named \"Elements\". Exiting" << endl;
+ exit(-1);
+ }
+
+ // check if it is a correct one
+ if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
+ cout << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
+ exit(-2);
+ }
+
+ // check if c is made of hexahedron/tetrahedron
+ StructuralComponent *sc = (StructuralComponent *) c;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
+ sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON)) {
+ cout << "Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON or TETRAHEDRON. Exiting" << endl;
+ exit(-3);
+ }
+
+ // now, we have the right component, let's do some work...
+ StructuralComponent * refined = refine(sc);
+
+ // add the new SC to the informative component
+ if (refined) {
+ pm->getInformativeComponents()->addSubComponent(refined);
+ // add another informative component with all new atoms
+ pm->getInformativeComponents()->addSubComponent(newAtomSC());
+ }
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-refined.pml";
+ } else
+ filename="refined.pml";
+
+ cout << "-> saved as " << filename << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" refined");
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+
+ delete pm;
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/renError/CMakeLists.txt b/modeling/applications/pmltools/renError/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/renError/CMakeLists.txt
rename to modeling/applications/pmltools/renError/CMakeLists.txt
diff --git a/modeling/applications/pmltools/renError/renError.cpp b/modeling/applications/pmltools/renError/renError.cpp
new file mode 100644
index 0000000..91dfce0
--- /dev/null
+++ b/modeling/applications/pmltools/renError/renError.cpp
@@ -0,0 +1,255 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+#include <limits>
+
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+// -------------------- isIn ------------------------
+bool isIn (StructuralComponent *sc, Atom *a) {
+ unsigned int i = 0;
+ bool found = false;
+
+ while (i < sc->getNumberOfStructures() && !found) {
+ found = (sc->getStructure (i) == a);
+ i++;
+ }
+
+ return found;
+}
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+
+public:
+ ProgramArg (std::string defaults[][2], unsigned int sz) {
+ for (unsigned int i = 0; i < sz; i++)
+ insert (std::pair<const std::string, std::string&> (defaults[i][0], defaults[i][1]));
+ };
+
+ void parse (int argc, char* argv[], std::string usage, int offset = 1) {
+ for (int i = offset; i < argc; i++) {
+ string flag (argv[i]);
+ unsigned int equal = flag.find ('=');
+
+ if (equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+
+ string name = flag.substr (0, equal);
+
+ string value = flag.substr (equal + 1);
+
+ if (find (name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+
+ operator[] (name) = value;
+ }
+ };
+
+ void print (std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+
+ for (iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-simul", "" },
+ { "-real", "" },
+ { "-init", ""},
+ { "-select", ""},
+};
+
+const char* usage = "usage:\n"
+ "renError -simul=simulation.pml -real=real.pml -init=init.pml [-select=\"name\"]\n"
+ "(Note no space around '=')\n"
+ "Mandatory options: \n"
+ "-simul pml document of the simulated results\n"
+ "-real pml document of the real results\n"
+ "-init pml document of the initial positions\n"
+ "Optional option: \n"
+ "-select name of the structural component or cell to export as csv\n"
+ " (default = all atoms)\n"
+ "\nCompute the Relative Energy Norm error (average, min, max, std-dev)"
+ ;
+
+// global ProgramArgument
+ProgramArg argVal (defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// arguments
+string simul;
+string real;
+string initial;
+string selected;
+
+// -------------------- processArg ------------------------
+void processArg() {
+ simul = argVal["-simul"];
+ real = argVal["-real"];
+ initial = argVal["-init"];
+ selected = argVal["-select"];
+
+ if (simul == "") {
+ cerr << "Argument error: -simul argument is mandatory" << endl << usage << endl;
+ exit (-1);
+ }
+
+ if (real == "") {
+ cerr << "Argument error: -real argument is mandatory" << endl << usage << endl;
+ exit (-1);
+ }
+
+ if (initial == "") {
+ cerr << "Argument error: -init argument is mandatory" << endl << usage << endl;
+ exit (-1);
+ }
+
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "renError is computing the Relative Energy Norm Error for ";
+
+ if (selected!="") {
+ cout << "component/cell " << selected;
+ } else {
+ cout << "all atoms";
+ }
+ cout << " in " << simul << " over " << real << " (using initial positions in " << initial << ")" << endl;
+}
+
+// -------------------- main ------------------------
+int main (int argc, char ** argv) {
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse (argc, argv, usage);
+ //argVal.print();
+
+ processArg();
+ printArg();
+
+ try {
+ // read the pmls
+ cout << "-> please wait while reading " << simul << endl;
+ PhysicalModel * simulPM = new PhysicalModel (simul.c_str());
+
+ StructuralComponent *simulA = NULL;
+ cout << "-> get ";
+ if (selected=="") {
+ cout << "all atoms" << endl;
+ simulA = simulPM->getAtoms();
+ } else {
+ cout << selected << endl;
+ Component *cpt = simulPM->getComponentByName(selected);
+ if (cpt && (cpt->isInstanceOf("StructuralComponent") || cpt->isInstanceOf("Cell"))) {
+ simulA = ((StructuralComponent *) cpt)->getAtoms();
+ } else {
+ // try harder: look for a cell
+ Structure *s = simulPM->getStructureByName(selected);
+ if (s && s->isInstanceOf("Cell")) {
+ simulA = ((Cell*) s)->getAtoms();
+ } else
+ throw PMLAbortException("No structural components/cells named " + selected);
+ }
+ }
+
+ cout << "-> please wait while reading " << real << endl;
+ PhysicalModel * realPM = new PhysicalModel (real.c_str());
+ cout << "-> please wait while reading " << initial << endl;
+ PhysicalModel * initialPM = new PhysicalModel (initial.c_str());
+
+ // for all selected atoms compute the error
+ double min = numeric_limits<double>::max(), max = -1.0;
+ double average = 0.0, stddev;
+ double sumSquare = 0.0;
+ double pos[3], posReal[3], pos0[3];
+ double val;
+
+ for (unsigned int i = 0; i < simulA->getNumberOfStructures(); i++) {
+ Atom *a = (Atom *) simulA->getStructure(i);
+ a->getPosition(pos);
+ realPM->getAtom(a->getIndex())->getPosition(posReal);
+ initialPM->getAtom(a->getIndex())->getPosition(pos0);
+
+ double simulatedToReal = sqrt ( (pos[0] - posReal[0]) * (pos[0] - posReal[0])
+ + (pos[1] - posReal[1]) * (pos[1] - posReal[1])
+ + (pos[2] - posReal[2]) * (pos[2] - posReal[2]));
+ double totalDisplacement = sqrt ( (pos0[0] - posReal[0]) * (pos0[0] - posReal[0])
+ + (pos0[1] - posReal[1]) * (pos0[1] - posReal[1])
+ + (pos0[2] - posReal[2]) * (pos0[2] - posReal[2]));
+
+ if (totalDisplacement > 1e-10) {
+ val = simulatedToReal / totalDisplacement;
+ } else
+ val = simulatedToReal; // error is 0% if simulatedToReal=0
+
+ if (val<min)
+ min=val;
+
+ if (val>max)
+ max=val;
+
+ sumSquare += (val*val);
+
+ average += val;
+ }
+
+ average /= ((double) simulA->getNumberOfStructures());
+ sumSquare /= ((double) simulA->getNumberOfStructures());
+ stddev = sqrt(sumSquare - average*average);
+
+ // print values
+ cout << "Average: " << average << endl;
+ cout << "Std-dev: " << stddev << endl;
+ cout << "Max: " << max << endl;
+ cout << "Min: " << min << endl;
+
+ } catch (PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/select/CMakeLists.txt b/modeling/applications/pmltools/select/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/select/CMakeLists.txt
rename to modeling/applications/pmltools/select/CMakeLists.txt
diff --git a/modeling/applications/pmltools/select/select.cpp b/modeling/applications/pmltools/select/select.cpp
new file mode 100644
index 0000000..f955cae
--- /dev/null
+++ b/modeling/applications/pmltools/select/select.cpp
@@ -0,0 +1,314 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+#include <float.h>
+
+// -------------------- ProgramArg ------------------------
+// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
+// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
+// Available at www.BruceEckel.com.
+// Program values can be changed by command lineclass ProgVals
+#include <map>
+#include <iostream>
+#include <string>
+
+class ProgramArg : public std::map<std::string, std::string> {
+public:
+ ProgramArg(std::string defaults[][2], unsigned int sz) {
+ for (unsigned int i = 0; i < sz; i++) insert(std::pair<const std::string, std::string&>(defaults[i][0], defaults[i][1]));
+ };
+
+ void parse(int argc, char* argv[], std::string usage, int offset = 1) {
+ for (int i = offset; i < argc; i++) {
+ string flag(argv[i]);
+ unsigned int equal = flag.find('=');
+ if (equal == string::npos) {
+ cerr << "Command line error: " << argv[i] << endl << usage << endl;
+ continue; // Next argument
+ }
+ string name = flag.substr(0, equal);
+ string value = flag.substr(equal + 1);
+ if (find(name) == end()) {
+ cerr << name << endl << usage << endl;
+ continue; // Next argument
+ }
+ operator[](name) = value;
+ }
+ };
+
+ void print(std::ostream& out = std::cout) {
+ out << "Argument values:" << endl;
+ for (iterator it = begin(); it != end(); it++)
+ out << (*it).first << " = " << (*it).second << endl;
+ };
+};
+
+string defaultsArg[][2] = {
+ { "-f", "none" },
+ { "-o", "none" },
+ { "-name", "selected" },
+ { "-xMin", "none" },
+ { "-xMax", "none" },
+ { "-yMin", "none" },
+ { "-yMax", "none" },
+ { "-zMin", "none" },
+ { "-zMax", "none" },
+};
+
+const char* usage = "usage:\n"
+ "select -f=file.pml [-o=out.pml] [-name=n] [-xMin=val] [-xMax=val] [-yMin=val] [-yMax=val] [-zMin=val] [-zMax=val]\n"
+ "Create a new PML document which contains a new structural component containing only\n"
+ "atoms which positions are in the defined bounding box\n"
+ "(Note no space around '=')\n"
+ "Where mandatory options are: \n"
+ "f\tsource pml document\n"
+ "And optional options are:\n"
+ "o\tdestination pml document\n"
+ "name\tname of the create SC\n"
+ "xMin\tmin included value for x\n"
+ "xMax\tmax included value for x\n"
+ "... the same for y and z\n"
+ "Note that if you do not provide value in a given direction, it means no selection has to be made\n";
+
+// global ProgramArgument
+ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
+
+// arguments/options
+string srcFile;
+string output;
+string name;
+double xMin, xMax;
+bool xMinProvided, xMaxProvided;
+double yMin, yMax;
+bool yMinProvided, yMaxProvided;
+double zMin, zMax;
+bool zMinProvided, zMaxProvided;
+
+// -------------------- processArg ------------------------
+void processArg() {
+ srcFile = argVal["-f"];
+ if (srcFile == "none") {
+ cerr << "Argument error: -f argument is mandatory" << usage << endl;
+ exit(-1);
+ }
+
+ output = argVal["-o"];
+ if (output == "none") {
+ output = srcFile;
+ unsigned int pLast = output.rfind(".");
+ if (pLast != string::npos) {
+ output.erase(pLast);
+ output += "-selected.pml";
+ } else
+ output = "selected.pml";
+ }
+
+ name = argVal["-name"];
+
+ xMinProvided = (argVal["-xMin"] != "none");
+ xMaxProvided = (argVal["-xMax"] != "none");
+ yMinProvided = (argVal["-yMin"] != "none");
+ yMaxProvided = (argVal["-yMax"] != "none");
+ zMinProvided = (argVal["-zMin"] != "none");
+ zMaxProvided = (argVal["-zMax"] != "none");
+ if (xMinProvided)
+ xMin = atof(argVal["-xMin"].c_str());
+ else
+ xMin = -DBL_MAX;
+ if (xMaxProvided)
+ xMax = atof(argVal["-xMax"].c_str());
+ else
+ xMax = DBL_MAX;
+ if (yMinProvided)
+ yMin = atof(argVal["-yMin"].c_str());
+ else
+ yMin = -DBL_MAX;
+ if (yMaxProvided)
+ yMax = atof(argVal["-yMax"].c_str());
+ else
+ yMax = DBL_MAX;
+ if (zMinProvided)
+ zMin = atof(argVal["-zMin"].c_str());
+ else
+ zMin = -DBL_MAX;
+ if (zMaxProvided)
+ zMax = atof(argVal["-zMax"].c_str());
+ else
+ zMax = DBL_MAX;
+}
+
+// -------------------- printArg ------------------------
+void printArg() {
+ cout << "select from " << srcFile << " to " << output << " in SC \"" << name << "\"" << endl;
+ cout << "using selection:"
+ << " x in [" << xMin << "," << xMax << "],"
+ << " y in [" << yMin << "," << yMax << "],"
+ << " z in [" << zMin << "," << zMax << "],";
+ cout << endl;
+}
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+
+ // Initialize and parse command line values
+ // before any code that uses pvals is called:
+ argVal.parse(argc, argv, usage);
+
+ processArg();
+ printArg();
+
+
+ try {
+ // read the pml
+ cout << "-> please wait while reading " << srcFile << " for selection" << endl;
+
+ PhysicalModel * pm = new PhysicalModel(srcFile.c_str());
+
+ // create the new component
+ StructuralComponent * selection;
+ selection = new StructuralComponent(pm, name);
+ Cell *selectionC = new Cell(pm, StructureProperties::POLY_VERTEX);
+ selection->addStructure(selectionC);
+
+ cout << "-> please wait while selecting...";
+
+ unsigned int nbSelected = 0;
+ StructuralComponent *srcA = pm->getAtoms();
+ Atom *a;
+ double pos[3];
+
+ for (unsigned int i = 0; i < srcA->getNumberOfStructures(); i++) {
+ // get the src position
+ a = (Atom *) srcA->getStructure(i);
+ a->getPosition(pos);
+ // should it be selected
+ if (pos[0] >= xMin && pos[0] <= xMax && pos[1] >= yMin && pos[1] <= yMax && pos[2] >= zMin && pos[2] <= zMax) {
+ selectionC->addStructureIfNotIn(a);
+ nbSelected++;
+ }
+ }
+
+ cout << " " << nbSelected << " selected" << endl;
+
+ // add the new SC to the informative component
+ if (!pm->getInformativeComponents()) {
+ MultiComponent *mc = new MultiComponent(pm, "Informative Components");
+ pm->setInformativeComponents(mc);
+ }
+
+ pm->getInformativeComponents()->addSubComponent(selection);
+
+ // save the result
+ cout << "-> please wait while saving " << output << " " << endl;
+
+ ofstream outputFile(output.c_str());
+ pm->setName(pm->getName() + " + selection");
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+
+ // -- Select only the cells where atoms are all in the selection
+ pm->getInformativeComponents()->removeSubComponent(selection);
+ std::vector<Cell *> toRemove;
+ // exclusive components
+ for (unsigned i=0; i<pm->getExclusiveComponents()->getNumberOfCells(); i++) {
+ Cell *c = pm->getCell(i);
+ bool allInSelected = true;
+ unsigned int j = 0;
+ // check if all atoms of c are selected
+ while (allInSelected && j<c->getNumberOfStructures()) {
+ allInSelected = allInSelected && selectionC->isStructureIn(c->getStructure(j));
+ j++;
+ }
+ // if some atoms of c are not selected, mark c to be deleted
+ if (!allInSelected) {
+ toRemove.push_back(c);
+ }
+ }
+ // informative components
+ for (unsigned i=0; i<pm->getInformativeComponents()->getNumberOfCells(); i++) {
+ Cell *c = pm->getCell(i);
+ bool allInSelected = true;
+ unsigned int j = 0;
+ // check if all atoms of c are selected
+ while (allInSelected && j<c->getNumberOfStructures()) {
+ allInSelected = allInSelected && selectionC->isStructureIn(c->getStructure(j));
+ j++;
+ }
+ // if some atoms of c are not selected, mark c to be deleted
+ if (!allInSelected) {
+ toRemove.push_back(c);
+ }
+ }
+ // now remove
+ std::vector <StructuralComponent *> cUsedIn;
+ for (unsigned int i=0; i<toRemove.size(); i++) {
+ cUsedIn = toRemove[i]->getAllStructuralComponents();
+ for (unsigned int j=0; j<cUsedIn.size(); j++) {
+ cUsedIn[j]->removeStructure(toRemove[i]);
+ }
+ }
+ // now set the atoms
+ pm->setAtoms(selectionC,false);
+
+ // print pm in another document
+ string output2 = output;
+ unsigned int pLast = output2.rfind(".");
+ if (pLast != string::npos) {
+ output2.erase(pLast);
+ output2 += "-selected-only.pml";
+ } else
+ output2 = "selected-only.pml";
+ ofstream outputFile2(output2.c_str());
+ pm->setName(pm->getName() + " + selected only");
+ pm->xmlPrint(outputFile2, false);
+
+ // print the list of selected atoms as a lml target
+ string outputTLName = name + ".txt";
+ cout << "-> please wait while saving " << outputTLName << " " << endl;
+ ofstream outputTargetList(outputTLName.c_str());
+ for (unsigned int i = 0; i < selectionC->getNumberOfStructures(); i++) {
+ outputTargetList << selectionC->getStructure(i)->getIndex();
+ if (i < selectionC->getNumberOfStructures() - 1)
+ outputTargetList << ",";
+ }
+ outputTargetList.close();
+
+ delete pm;
+ } catch (PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/tri2pml/CMakeLists.txt b/modeling/applications/pmltools/tri2pml/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/tri2pml/CMakeLists.txt
rename to modeling/applications/pmltools/tri2pml/CMakeLists.txt
diff --git a/modeling/applications/pmltools/tri2pml/tri2pml.cpp b/modeling/applications/pmltools/tri2pml/tri2pml.cpp
new file mode 100644
index 0000000..afd35d5
--- /dev/null
+++ b/modeling/applications/pmltools/tri2pml/tri2pml.cpp
@@ -0,0 +1,390 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+//
+// C++ Implementation: tri2pml
+//
+// Description:
+//
+// the first argument is the name of a file (the triangle file)
+// The triangle format is as follow :
+// - nr of vertices on the first line
+// - list of all coordinates
+// - nr of triangles
+// - and finally then the list of triangle node indexes
+
+// here is an example of a triangle file:
+// 201
+// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
+// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
+// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
+// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
+// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
+// 204.927002 211.143997 65.9347992 204.996002 203.227005 63.8834991
+// 204.904999 197.218994 58.0499001 205.156998 195.229996 49.9992981
+// 204.904007 197.218002 41.9476013 204.994003 203.225998 36.1137009
+// 204.925995 211.143997 34.0623016 205.076996 218.942993 36.2391014
+// 205.117996 224.679993 42.0769997 195.733994 233.279999 49.9991989
+// 195.425995 231.682007 58.651001 195.128006 227.037003 65.908699
+// 194.822998 219.987 70.8787994 194.681 211.408997 72.7072983 194.744995
+// 202.714005 70.9886017 194.737 195.322006 66.1066971 194.841003
+// 190.419006 58.8510017 194.957001 188.701004 49.9998016 194.837997
+// 190.419006 41.1478004 194.733002 195.320999 33.8917999 194.740005
+// 202.712997 29.0091991 194.677994 211.406998 27.2901993 194.820999
+// 219.985992 29.1184006 195.126999 227.037003 34.0895996 195.425995
+// 231.682007 41.3474007 182.660004 238.115997 49.9992981 182.451996
+// 236.664993 58.9043999 182.085007 232.565994 66.7394028 181.636993
+// 226.253998 72.8107986 181.039993 218.354004 76.5053024 180.806
+// 209.505997 77.3675003 181.317993 200.705994 75.1343002 181.591995
+// 193.024002 70.060997 181.746994 187.490005 62.9435005 181.738007
+// 184.610001 54.4679985 181.735992 184.610001 45.5321999 181.742004
+// 187.490005 37.0563011 181.585007 193.024002 29.9388008 181.311996
+// 200.703003 24.8658009 180.802994 209.505005 22.6319008 181.039001
+// 218.352005 23.4941006 181.636002 226.253006 27.1879997 182.084
+// 232.565002 33.2593994 182.451004 236.664993 41.0942001 167.472
+// 240.304993 49.9994011 167.315994 238.871994 59.1222 166.912003
+// 234.809998 67.2751999 166.324997 228.537994 73.7573013 165.412003
+// 220.673004 77.9524994 163.651001 212.367996 79.447998 165.856003
+// 202.725006 77.8918991 166.429993 194.429001 73.637001 166.608002
+// 187.936996 67.093399 166.662003 183.886993 59.0017014 166.753998
+// 182.429001 50.0009003 166.658997 183.886993 41.0004005 166.602005
+// 187.936996 32.908699 166.423004 194.427994 26.3642006 165.848999
+// 202.725006 22.1098995 163.647995 212.365997 20.5538998 165.410995
+// 220.671005 22.0482006 166.324005 228.537003 26.2420998 166.910995
+// 234.809006 32.7238998 167.315994 238.871994 40.8764 151.835999
+// 239.468002 49.9996986 151.660004 237.951004 59.1351013 151.274002
+// 233.610992 67.2938004 150.830002 226.940994 73.6313019 150.115997
+// 218.690994 77.3936005 149.949997 209.399002 78.143898 150.544998
+// 200.186996 75.7360992 150.968002 192.516006 70.6867981 151.110992
+// 186.903 63.3594017 151.274994 183.906998 54.6599998 151.274002
+// 183.906998 45.3432999 151.106995 186.903 36.6436005 150.962006
+// 192.516006 29.3166008 150.539001 200.188004 24.2667007 149.944
+// 209.399994 21.8596992 150.113007 218.690994 22.6088009 150.828003
+// 226.940002 26.3701 151.272003 233.610992 32.7069016 151.660004
+// 237.951004 40.8646011 137.266006 235.638 50.0005989 137.052002
+// 233.746994 59.2244987 136.727997 228.546005 67.0988007 136.380997
+// 220.755997 72.3856964 136.190002 211.565002 74.2394028 136.380997
+// 202.220993 72.3259964 136.684998 194.445007 67.0942993 136.906998
+// 189.218994 59.2350998 137.018005 187.365005 50.0015984 136.906006
+// 189.220001 40.767601 136.682007 194.447006 32.9085007 136.378006
+// 202.223007 27.6765995 136.186005 211.567001 25.7646008 136.378998
+// 220.757996 27.6180992 136.727005 228.546997 32.9045982 137.052002
+// 233.748001 40.7779999 125.139 229.164001 50.0024986 124.925003
+// 226.662003 58.8370018 124.797997 220.257996 65.3336029 124.700996
+// 211.386993 67.7137985 124.739998 202.552994 65.2739029 124.971001
+// 196.110001 58.8339996 125.170998 193.675995 50.0007019 124.971001
+// 196.112 41.167099 124.737999 202.557007 34.7289009 124.698997
+// 211.391006 32.2905998 124.796997 220.261993 34.6725006 124.926003
+// 226.664001 41.1697998 116.166 220.483002 50.0068016 116.230003
+// 215.843994 58.0330009 116.362 206.574005 58.0284996 116.43 201.942001
+// 49.9977989 116.365997 206.580994 41.9715004 116.234001 215.852005
+// 41.9760017 114.734001 210.878006 49.9991989 174.122116 217.068161
+// 31.7504559 172.845322 217.308792 48.5277519 167.153168 214.523697
+// 39.7758484 181.559479 210.526749 34.7726517 188.018204 215.87796
+// 39.7380791 184.143738 224.294205 42.0575256 197.055756 214.458328
+// 38.7829208 194.991425 210.800476 54.7543221 193.28717 202.241409
+// 40.9057541 204.158218 205.777817 50.9520607 197.350235 221.431885
+// 46.0859756 205.353348 213.013306 46.1315346 136.512878 212.353867
+// 63.7603073 136.803589 212.550674 48.2269096 137.144806 220.346344
+// 61.4673576 145.934494 210.935974 55.5667152 147.122406 219.049301
+// 65.7673264 127.637863 213.684891 57.7648048 155.055756 219.283691
+// 57.2817078 157.627609 218.691803 68.3738556 158.877777 227.444443
+// 60.4090767 157.239014 214.618912 42.7295799 150.678391 224.44072
+// 42.8708191 156.86319 228.042023 52.577179 167.16449 229.505142
+// 47.8503952 166.877808 224.886551 59.4400215 167.344315 209.241409
+// 57.7920151 156.016373 211.103333 65.0439377 125.501251 217.264023
+// 49.4178391 144.429642 209.962738 39.080452 130.778366 213.858948
+// 40.0691223 140.463333 222.008209 39.4355965 139.815598 225.72168
+// 49.4672127 136.28949 202.349487 41.0455284 145.962448 195.281769
+// 48.8271103 147.488693 198.23613 37.7950897 136.704361 200.614502
+// 59.242939 150.481583 199.411041 60.4735184 152.468857 198.37587
+// 45.7318878 157.677902 191.62085 51.4769325 196.616882 218.971909
+// 57.1982651 204.238693 213.30249 54.1141624 159.744888 232.552795
+// 43.8564072 168.660782 225.179016 37.9129562 191.862534 205.648514
+// 62.5157318 180.80452 209.505508 49.9997406 183.883865 197.143555
+// 56.6907158 145.60112 228.086609 57.396431 175.108383 231.910431
+// 53.4562454 175.68959 225.918808 59.6542206 185.944397 224.478149
+// 56.2026367 174.792694 192.130005 49.9737282 174.053543 196.442856
+// 37.7757225 182.502289 197.298569 48.2248764 166.223877 195.831894
+// 42.2486687 173.008575 202.979706 46.7984734 166.829437 195.548477
+// 57.1409531 157.996948 207.388916 32.52491 171.89621 216.18663
+// 67.2036209 173.671951 200.933304 66.221962 180.062073 210.119934
+// 64.1635513 187.354813 211.602554 65.3569107 194.980927 199.277191
+// 52.4201088 123.912224 207.559799 50.1583328 158.063065 201.043579
+// 66.0226746 157.567657 206.597137 51.0658493 183.447632 200.285034
+// 38.0877419 169.998138 205.641113 32.1545448 136.224457 199.33667
+// 50.2796478 159.975189 221.28949 31.02672 144.484528 214.412399
+// 33.054985 146.594879 207.633087 66.7936783 158.706665 193.814636
+// 36.3628883
+// 1019
+// 129 130 131 132 133 129 130 134 129 133 132 51 135 133 32 31 135 136 137 138
+// 135 136 139 133 135 18 139 140 135 138 137 16 135 16 137 31 141 142 143 144 141
+// 98 145 97 141 146 112 143 147 148 149 145 147 150 144 151 130 147 152 150 150
+// 130 153 152 154 147 152 130 147 155 130 154 156 154 155 147 141 143 142 146 142
+// 146 143 157 142 158 159 160 142 160 157 161 162 163 164 158 163 144 165 166 166
+// 163 101 165 85 86 103 163 163 144 166 167 83 163 101 166 84 163 168 85 163 168
+// 167 166 84 163 83 168 163 83 168 166 169 8 170 140 171 172 151 92 171 172 92 73
+// 136 173 174 175 171 172 73 74 171 55 152 153 171 153 74 55 176 145 77 96 143
+// 144 147 145 161 144 147 143 147 143 176 161 161 152 75 176 176 161 94 75 176 76
+// 152 75 147 176 145 149 149 76 57 56 149 145 148 78 147 152 149 154 149 154 56
+// 57 149 78 148 58 149 58 154 57 177 153 74 54 177 178 57 154 177 153 54 134 177
+// 134 130 153 178 177 37 179 177 153 56 55 130 154 178 177 180 181 182 47 180 181
+// 183 184 180 64 185 65 180 65 183 66 180 182 45 46 180 184 183 185 168 185 65
+// 183 131 183 150 186 187 61 188 41 187 178 58 39 178 187 189 39 187 40 60 41 178
+// 189 179 39 187 188 189 41 190 25 173 24 24 173 136 11 136 179 174 190 169 190
+// 23 179 190 40 189 41 133 134 34 52 179 190 23 39 40 39 190 189 13 191 12 138
+// 192 159 162 118 142 192 165 146 187 156 155 193 136 12 170 11 136 138 191 137
+// 179 174 190 189 136 179 133 174 136 169 11 170 136 190 174 173 136 137 174 133
+// 130 131 132 184 129 172 130 134 172 130 150 131 131 130 150 184 130 150 184 194
+// 49 195 31 132 130 189 155 174 189 155 187 130 196 181 49 195 196 49 181 68 129
+// 131 196 132 192 159 118 126 142 165 192 197 196 186 131 70 196 50 132 49 186
+// 198 70 90 167 150 144 194 150 199 198 186 151 150 199 198 186 90 199 198 186 88
+// 199 89 186 150 199 158 194 130 147 155 158 186 150 167 150 131 198 172 150 199
+// 158 151 147 150 194 144 200 98 99 80 129 196 50 132 129 172 72 198 192 197 115
+// 116 129 132 50 51 196 186 183 131 131 184 150 183 186 201 68 196 196 186 69 68
+// 186 150 131 198 130 174 132 133 88 201 68 186 194 155 156 166 150 194 130 147
+// 147 194 155 156 158 167 150 144 130 174 155 184 135 136 138 140 147 194 156 144
+// 155 174 175 184 130 155 187 154 161 110 94 109 194 184 185 183 142 151 161 144
+// 142 197 162 144 162 144 158 142 28 27 175 45 144 197 162 163 193 156 80 60 187
+// 193 155 188 193 82 166 83 155 193 185 188 80 193 200 156 178 179 38 39 193 156
+// 166 200 135 140 16 17 144 145 200 156 176 95 143 96 145 143 97 96 145 79 156
+// 148 147 176 149 152 196 183 186 201 67 68 201 183 196 181 183 68 196 181 184
+// 183 180 181 66 183 181 49 195 48 181 66 183 67 180 181 184 182 180 44 185 64
+// 201 168 85 66 194 167 168 166 168 185 64 65 167 168 85 201 194 183 168 167 168
+// 66 183 65 175 44 26 43 175 174 136 191 175 184 180 185 155 175 174 189 133 130
+// 179 134 190 174 173 189 187 193 60 156 184 150 183 194 147 150 151 152 152 130
+// 153 154 147 161 176 152 172 129 52 134 194 168 183 185 196 132 184 195 181 184
+// 182 195 193 83 185 63 194 185 155 166 186 158 164 167 194 166 168 185 168 201
+// 183 66 168 201 167 183 201 183 66 67 68 181 183 67 201 164 88 87 168 83 185 166
+// 177 56 154 57 177 130 179 178 130 178 189 179 187 59 39 58 178 154 58 57 200
+// 166 100 165 141 200 99 165 187 156 60 148 81 80 193 200 144 166 200 165 141 144
+// 200 165 141 142 144 165 141 97 145 143 199 158 105 88 186 158 199 88 85 201 86
+// 167 169 22 10 9 199 91 151 198 108 160 107 91 160 107 91 199 199 159 107 106
+// 158 164 105 88 186 164 158 88 160 159 107 199 200 99 81 80 188 63 44 43 135 34
+// 133 139 33 135 34 133 135 32 133 33 133 137 31 135 133 32 132 51 133 139 34 134
+// 174 184 132 195 133 179 139 134 135 138 16 140 138 137 15 191 138 140 6 16 138
+// 13 191 14 138 6 140 1 138 191 15 14 188 44 185 175 140 6 7 1 62 63 193 188 187
+// 155 189 188 43 189 175 188 176 76 149 152 141 97 143 112 187 130 178 189 188
+// 189 41 42 155 185 193 166 192 118 162 117 158 159 199 105 169 23 11 10 159 158
+// 199 160 159 157 121 127 150 152 153 151 174 133 130 179 179 134 36 20 177 179
+// 36 37 177 153 154 56 196 132 131 184 139 179 20 134 174 137 195 132 144 158 167
+// 163 171 172 74 153 191 29 14 28 199 160 151 91 171 151 172 153 182 175 184 180
+// 180 181 47 66 168 185 83 64 166 100 82 200 163 168 85 167 174 175 184 182 174
+// 184 195 182 180 185 44 175 147 148 156 154 188 185 44 63 177 134 54 36 172 134
+// 53 54 177 179 130 134 177 179 134 36 191 175 173 136 170 11 4 3 155 166 193 156
+// 151 152 75 161 149 148 154 58 130 174 184 132 166 200 82 193 187 193 61 60 187
+// 59 148 60 189 179 39 190 187 154 155 156 177 130 154 153 12 170 138 136 195 182
+// 47 29 181 48 195 47 167 186 150 183 185 65 183 180 163 165 197 101 192 157 128
+// 123 163 162 164 103 194 155 185 184 165 166 100 101 164 167 163 86 163 197 162
+// 103 152 153 55 56 176 94 161 95 163 101 197 102 192 159 127 157 142 161 157 143
+// 141 142 165 146 142 159 192 157 192 123 146 157 160 159 157 121 161 143 95 111
+// 161 93 151 109 160 161 151 109 118 159 105 119 192 162 197 117 138 15 6 5 160
+// 151 161 142 176 145 96 143 176 161 143 95 161 157 110 121 194 166 144 167 72
+// 172 92 198 186 89 199 90 172 153 54 74 130 174 179 189 198 91 71 90 146 112 143
+// 111 199 158 151 160 163 86 103 164 63 193 188 185 194 144 166 156 79 156 60 80
+// 145 200 79 98 149 145 78 77 145 148 78 79 197 162 103 117 39 187 189 40 170 9
+// 10 3 192 114 146 124 193 166 185 83 148 187 154 58 193 82 62 81 141 112 146 113
+// 181 195 182 47 191 28 182 29 141 113 146 114 151 198 91 92 192 127 159 126 193
+// 60 80 61 154 130 178 187 149 58 77 78 148 60 59 79 190 41 189 42 169 179 21 20
+// 190 173 42 189 139 35 134 20 139 134 35 34 139 8 140 19 140 7 2 1 135 136 133
+// 137 196 132 195 49 174 195 137 182 138 5 1 4 170 1 2 3 169 21 22 9 192 157 127
+// 128 179 39 22 38 132 133 129 130 140 7 18 19 135 33 17 32 157 122 111 110 146
+// 124 113 123 192 125 116 115 192 126 117 125 159 119 127 120 159 127 119 126 192
+// 117 126 118 137 29 191 182 192 125 128 126 197 115 116 101 159 118 126 119 159
+// 127 121 120 146 111 123 112 157 123 111 122 192 115 124 125 201 167 183 186 192
+// 126 128 127 173 11 25 12 197 117 103 116 160 108 120 121 170 3 4 1 161 121 110
+// 109 52 172 53 72 159 106 119 107 157 127 128 122 172 151 92 198 160 107 120 108
+// 139 136 179 133 11 24 169 136 162 118 159 105 162 118 105 104 148 79 156 60 137
+// 182 195 29 157 122 110 121 129 130 172 131 159 199 105 106 199 107 90 106 146
+// 113 124 114 129 196 70 50 186 198 131 70 146 123 113 112 170 9 3 2 165 114 100
+// 99 192 116 125 117 143 96 111 112 129 70 198 71 187 59 60 40 161 111 95 110 179
+// 21 37 38 145 97 79 78 145 77 96 78 192 124 115 114 157 122 121 127 145 98 79 97
+// 192 123 128 124 160 92 91 108 160 92 108 109 109 94 161 93 199 106 90 89 160
+// 121 109 108 197 116 103 102 188 175 43 44 129 134 133 52 165 115 101 100 162
+// 104 103 117 101 166 100 83 199 106 89 105 159 107 119 120 164 105 87 104 164 88
+// 87 105 145 78 96 97 162 104 117 118 190 42 25 41 169 139 136 179 195 31 132 137
+// 86 167 163 85 141 113 114 99 196 49 69 50 165 114 115 100 193 83 63 82 141 97
+// 113 98 132 137 31 133 173 174 175 189 129 72 52 71 144 158 142 151 144 156 200
+// 166 164 104 87 86 192 124 146 123 141 112 113 97 139 140 169 136 192 146 114
+// 165 200 100 82 99 176 96 77 95 147 144 161 151 148 78 59 58 176 95 76 94 192
+// 197 165 115 151 109 93 92 174 137 191 182 171 93 74 73 163 102 84 101 198 71 91
+// 72 183 68 201 196 196 186 70 69 163 197 103 102 140 169 136 170 136 11 173 12
+// 68 186 69 88 169 179 22 21 198 90 71 70 73 72 172 92 23 179 22 169 195 48 30 47
+// 150 172 198 151 186 90 70 89 25 190 173 42 169 9 170 8 170 140 8 2 163 101 84
+// 83 172 73 53 72 199 88 105 89 143 111 96 95 200 82 193 81 66 201 86 85 201 86
+// 67 66 188 42 43 189 157 122 128 123 174 133 137 132 168 84 64 83 136 12 173 191
+// 93 75 151 171 176 75 94 76 153 172 130 150 166 82 100 83 142 162 192 159 161
+// 110 95 94 99 200 81 82 169 190 24 23 197 116 102 101 143 96 112 97 12 191 26
+// 173 148 79 59 78 200 79 98 80 196 131 183 184 26 43 25 173 163 84 102 85 138
+// 170 4 1 187 41 189 40 193 81 61 80 191 27 175 28 26 191 175 173 176 95 77 76 37
+// 56 36 177 191 12 138 136 56 36 177 55 4 12 170 138 171 93 73 92 54 73 172 74
+// 171 92 151 93 190 169 136 179 152 154 56 149 153 152 154 56 140 8 2 19 75 151
+// 171 152 129 50 70 51 196 70 50 69 171 93 75 74 171 152 151 153 75 93 151 161
+// 191 28 14 27 93 94 161 75 164 104 86 103 192 128 125 124 150 172 151 153 171 75
+// 152 55 201 87 67 86 201 87 88 68 161 111 157 143 176 149 77 145 79 156 200 145
+// 159 106 105 119 161 110 157 111 199 107 91 90 163 144 158 162 142 158 162 159
+// 129 71 52 51 168 84 85 65 186 89 69 88 72 129 52 172 145 143 176 147 147 145
+// 156 148 175 180 45 44 179 38 22 21 196 68 69 49 181 67 68 48 138 4 13 5 180 66
+// 46 65 155 184 175 185 152 56 55 75 133 33 52 34 193 82 63 62 193 61 81 62 200
+// 99 165 100 186 89 70 69 155 188 175 189 54 36 74 177 175 28 182 191 182 175 180
+// 45 31 133 32 132 45 28 182 175 137 30 195 31 140 17 7 6 57 177 37 178 129 131
+// 172 198 129 71 198 72 158 159 105 162 187 39 59 40 176 77 149 76 178 57 58 38
+// 186 201 167 164 177 74 153 55 149 56 152 76 178 38 58 39 149 57 76 77 187 154
+// 58 178 179 178 38 37 160 159 120 107 160 109 151 92 160 161 109 121 163 103 85
+// 102 183 167 194 150 150 158 144 151 53 54 73 172 151 158 142 160 182 47 29 46
+// 135 31 17 16 155 188 185 175 180 65 46 45 134 35 54 20 134 34 53 35 185 64 44
+// 63 168 65 85 66 180 46 66 47 133 51 33 32 160 159 121 120 160 161 121 157 142
+// 157 160 159 139 20 8 35 138 15 137 16 180 64 45 44 129 133 51 52 132 31 50 32
+// 134 54 35 53 36 74 177 55 141 200 145 98 138 14 5 13 134 172 53 52 169 8 21 9
+// 190 40 23 39 130 134 172 153 160 151 91 92 198 92 72 91 173 12 25 26 181 47 67
+// 48 187 193 188 61 195 49 31 48 187 58 148 59 147 154 149 148 195 29 47 30 39
+// 179 22 23 137 29 30 15 182 29 28 46 180 65 45 64 170 11 3 10 129 70 196 131 37
+// 178 38 57 175 44 27 26 168 84 65 64 132 50 31 49 195 30 48 31 199 198 90 91 136
+// 24 169 190 188 62 43 42 43 175 173 26 193 62 188 61 149 77 58 57 135 33 34 18
+// 179 37 20 36 182 45 46 28 173 43 25 42 189 42 43 173 163 165 144 197 181 48 68
+// 49 190 41 25 24 136 191 174 137 56 57 177 37 190 173 136 24 27 26 191 175 188
+// 61 62 42 190 23 40 24 141 113 99 98 23 169 11 24 152 56 75 76 190 41 24 40 169
+// 20 139 179 169 8 139 20 169 140 139 8 135 139 136 140 187 41 60 61 134 34 52 53
+// 147 145 144 156 179 20 37 21 139 19 140 18 171 55 74 75 135 140 17 18 135 139
+// 18 34 137 15 191 29 138 170 1 140 170 140 2 1 169 170 10 11 136 138 140 170 139
+// 19 35 8 135 32 17 31 169 10 22 23 134 20 54 36 169 20 21 8 135 33 18 17 132 51
+// 32 50 140 18 7 17 129 131 198 70 138 1 5 6 181 67 47 66 169 10 170 9 80 79 156
+// 200 170 2 8 9 139 34 35 19 137 31 16 30 138 16 6 15 137 30 16 15 188 42 41 61
+// 172 54 153 134 138 5 14 15 142 192 146 157 191 13 27 14 170 12 4 11 191 14 29
+// 15 147 151 161 152 191 26 27 13 180 47 182 46 186 201 164 88 137 29 195 30 196
+// 181 195 184 165 197 101 115 201 87 68 67 141 165 99 114 141 145 144 143 173 189
+// 175 43 142 192 162 197 192 165 114 115 185 63 83 64 138 4 12 13 13 12 191 26
+// 154 148 156 187 164 104 162 105 146 157 123 111 201 86 164 87 173 25 11 24 201
+// 164 86 167 163 164 158 167 192 117 197 116 175 45 27 44 158 164 162 105 129 71
+// 51 70 164 103 162 104 133 52 33 51 141 114 146 165 142 143 144 161 146 157 111
+// 143 182 174 175 191 141 200 98 99 140 16 17 6 140 19 2 7 139 18 34 19 188 63 43
+// 62 184 155 130 194 141 144 145 200 142 197 144 165 0
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <stdlib.h>
+
+using namespace std;
+
+int main(int argc, char ** argv) {
+
+ if (argc<2 || argc>3) {
+ cout << "usage: " << argv[0] << endl;
+ cout << "\t" << argv[0] << " file.trian [offset]" << endl;
+ cout << "offset is an integer equal to the number of informative number to dump after the description of each triangle (see source code!)" << endl;
+ exit(-1);
+ }
+
+ // determine if there is an offset
+ unsigned int offset = (argc==2)?0:atoi(argv[2]);
+
+ // open the noboite.txt file
+ string filename(argv[1]);
+ ifstream nobox(filename.c_str());
+
+ // save the result in the pml file
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-out.pml";
+ } else
+ filename += "-out.pml";
+ ofstream outputFile(filename.c_str());
+ outputFile << "<!-- Created by tri2pml (c) E Promayon, TIMC (c) 1997-2006 -->" << endl;
+ outputFile << "<physicalModel name=\"from triangles\" >" << endl;
+
+ // vertices
+ unsigned int nVertices;
+ nobox >> nVertices;
+
+ outputFile << "<atoms>" << endl;
+ outputFile << "<structuralComponent name=\"vertices\">" << endl;
+
+ double x, y, z;
+ for (unsigned int i=1; i<=nVertices; i++) {
+ // read position
+ nobox >> x;
+ nobox >> y;
+ nobox >> z;
+ // write atom
+ outputFile << "<atom>" << endl;
+ // indexes start at 0
+ outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
+ outputFile << "</atom>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</atoms>" << endl;
+
+ cout << "-> created " << nVertices << " atoms" << endl;
+
+ // regions
+ outputFile << "<exclusiveComponents>" << endl;
+ outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
+ outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
+ outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
+ for (unsigned int i=1; i<=nVertices; i++)
+ outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
+ outputFile << "</cell>" << endl;
+ outputFile << "</structuralComponent>" << endl;
+
+ cout << "-> created region" << endl;
+
+// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
+ unsigned int nTetra;
+ nobox >> nTetra;
+
+ outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+ outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ cout << "-> creating triangles (offset=" << offset << ", nb of triangles to read=" << nTetra << endl;
+
+ int id;
+ for (unsigned int i=0; i<nTetra; i++) {
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties type=\"TRIANGLE\" />" << endl;
+ for (unsigned int j=0; j<3; j++) {
+ nobox >> id;
+ outputFile << "<atomRef index=\"" << id << "\" />" << endl;
+ }
+ // discard the next "offset" number of integer
+ for (unsigned int j=0; j<offset; j++)
+ nobox >> id;
+ outputFile << "</cell>" << endl;
+ }
+
+ cout << "...finished (" << nTetra << " triangles created)" << endl;
+ cout << "Results in " << filename << endl;
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</multiComponent>" << endl;
+ outputFile << "</exclusiveComponents>" << endl;
+ outputFile << "</physicalModel>" <<endl;
+
+ outputFile.close();
+
+}
diff --git a/modeling/libraries/pml/tools/triangulate/CMakeLists.txt b/modeling/applications/pmltools/triangulate/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/triangulate/CMakeLists.txt
rename to modeling/applications/pmltools/triangulate/CMakeLists.txt
diff --git a/modeling/applications/pmltools/triangulate/triangulate.cpp b/modeling/applications/pmltools/triangulate/triangulate.cpp
new file mode 100644
index 0000000..bd0d1d6
--- /dev/null
+++ b/modeling/applications/pmltools/triangulate/triangulate.cpp
@@ -0,0 +1,143 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+#include <math.h>
+#include <limits.h>
+
+// -------------------- main ------------------------
+int main(int argc, char ** argv) {
+
+ if (argc!=3) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.pml component" << endl;
+ cout << "If component is made of quad and triangle, transform all quads in triangle, output to: file-triangulated.pml" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ try {
+ // read the pml
+ string filename(argv[1]);
+ string component(argv[2]);
+ cout << "-> please wait while reading " << filename << " for triangulation" << endl;
+
+ PhysicalModel * pm = new PhysicalModel(filename.c_str());
+
+ // create the new component
+ StructuralComponent * moore;
+ moore = new StructuralComponent(pm, component);
+
+ // get the component
+ Component *cpt = pm->getComponentByName(argv[2]);
+ if (!cpt) {
+ throw PMLAbortException("No component named " + component);
+ }
+ if (!cpt->isInstanceOf("StructuralComponent") || ((StructuralComponent *)cpt)->composedBy()!=StructuralComponent::CELLS) {
+ throw PMLAbortException(component + " is not a structural component made of cells");
+ }
+ StructuralComponent *sc = (StructuralComponent *) cpt;
+ StructuralComponent *newSc = new StructuralComponent(pm,component+"-triangulated");
+ unsigned int triangulated=0;
+ cout << "-> please wait while triangulating..." << endl;
+
+ // check each cell, everytime a quad is found, triangulate it
+ Cell *c;
+ Cell *newCell;
+ for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
+ c = sc->getCell(i);
+ switch (c->getType()) {
+ case StructureProperties::QUAD:
+ triangulated++;
+ /*
+ * QUAD
+ * 3--------2 lines: triangulation:
+ * | | 0,1 0,1,3
+ * | | 1,2 1,2,3
+ * | | 2,3
+ * 0--------1 3,0
+ */
+ newCell = new Cell(pm, StructureProperties::TRIANGLE);
+ newCell->addStructure(c->getStructure(0));
+ newCell->addStructure(c->getStructure(1));
+ newCell->addStructure(c->getStructure(3));
+ newSc->addStructure(newCell);
+ newCell = new Cell(pm, StructureProperties::TRIANGLE);
+ newCell->addStructure(c->getStructure(1));
+ newCell->addStructure(c->getStructure(2));
+ newCell->addStructure(c->getStructure(3));
+ newSc->addStructure(newCell);
+ break;
+
+ case StructureProperties::TRIANGLE:
+ // create a new identical cell
+ newCell = new Cell(pm,c->getType());
+ for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
+ newCell->addStructure(c->getStructure(j));
+ newSc->addStructure(newCell);
+ break;
+
+ default:
+ cout << "Cannot triangulate cell" << c->getIndex() << " (" << StructureProperties::toString(c->getType()) << ")" << endl;
+ break;
+ }
+ }
+
+ // add the new SC to the informative component
+ if (!pm->getInformativeComponents()) {
+ MultiComponent *mc = new MultiComponent(pm);
+ pm->setInformativeComponents(mc);
+ }
+
+ pm->getInformativeComponents()->addSubComponent(newSc);
+
+ // save the result
+ unsigned int pLast = filename.rfind(".");
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ filename += "-triangulated.pml";
+ } else
+ filename="triangulated.pml";
+
+ cout << "-> please wait while saving " << filename << " " << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" Triangulated");
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+
+ delete pm;
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+}
diff --git a/modeling/libraries/pml/tools/vtk2model/CMakeLists.txt b/modeling/applications/pmltools/vtk2model/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/vtk2model/CMakeLists.txt
rename to modeling/applications/pmltools/vtk2model/CMakeLists.txt
diff --git a/modeling/applications/pmltools/vtk2model/vtk2model.cpp b/modeling/applications/pmltools/vtk2model/vtk2model.cpp
new file mode 100644
index 0000000..551ddcb
--- /dev/null
+++ b/modeling/applications/pmltools/vtk2model/vtk2model.cpp
@@ -0,0 +1,1253 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// Description: very simple vtk unstructured grid export to biomecanichal pml
+// this is equivalent to use vtk2pml -> optimizeMesh -> elementsToNeighborhood
+//
+// Note: this transformation is done manually, without the help of the VTK API
+// Pros: no dependencies
+// Cons: lots of things/case/vtk types not take into account, very simple transformation
+//
+// the first argument is the name of a vtk file
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <cstdlib>
+#include <sstream>
+
+using namespace std;
+
+// the input .obj file
+std::ifstream vtkFile;
+unsigned lineNr;
+bool eof;
+
+typedef struct {
+ string directive;
+ string data;
+ bool ok;
+} ObjLine;
+
+ObjLine currentLine;
+
+// -------------------- getNext ------------------------
+// get the next current line
+void getNext() {
+ char l[200];
+ string line;
+ currentLine.ok = false;
+
+ while ( !eof && !currentLine.ok ) {
+ eof = ! ( vtkFile.getline ( l,199 ) );
+ lineNr++;
+
+ if ( l[0]!='#' ) {
+ line = l;
+
+ unsigned int space = line.find ( ' ' );
+
+ if ( space != string::npos && space != 0 ) {
+ currentLine.directive = line.substr ( 0,space );
+ currentLine.data = line.substr ( space+1 );
+ currentLine.ok = true;
+ }
+ }
+ }
+
+}
+
+
+// -------------------- getCountFromDirective ------------------------
+int getCountFromDirective ( string directive ) {
+ // go to the first directive
+ while ( !eof && currentLine.directive!=directive ) {
+// cout << "l=" << currentLine.directive << endl;
+ getNext();
+ }
+
+ if ( !eof )
+ return atoi ( currentLine.data.c_str() );
+ else
+ return 0;
+}
+
+// -----------------------------------------------------------------------------------
+
+#include <math.h>
+#include <iostream>
+#include <string>
+using namespace std;
+
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+#include <pml/StructuralComponent.h>
+#include <pml/Atom.h>
+
+/// global variables
+// -------------------- the physical model being processed ------------------------
+PhysicalModel * pm;
+
+// -------------------- all cluster ------------------------
+class Cluster;
+vector <Cluster *> allClusters;
+
+// first atom is now replaced by 2nd atom
+map<Atom *, Atom *> replacement;
+
+double precision;
+unsigned int nrOfNewAtoms;
+
+/** class Cluster
+ *
+ * a cluster is a set of point that are nearly at the same place (at a given precision)
+ */
+class Cluster {
+public:
+ /// create a cluster of this atom, using the given precision
+ Cluster(double distance);
+
+ ~Cluster();
+
+ /// get composing atom by index
+ Atom * getAtom(unsigned int id);
+
+ /// add an atom to the cluster if in the given precision (true if added) (update center)
+ bool addAtom(Atom *);
+
+ /// get the center (create if necessary)
+ Atom * getCenter();
+
+ /// get nr of atoms in the cluster
+ unsigned int nrOfAtoms();
+
+ /// current atom index for new atoms
+ static unsigned int atomIndex;
+
+private:
+ /// cluster center
+ Atom *center;
+
+ /// the cluster cell
+ Cell *myCell;
+
+ /// distance precision
+ double distance;
+
+ /// update center position
+ void updateCenter();
+};
+
+unsigned int Cluster::atomIndex = 10000;
+
+
+// -------------------- constructor/destructor ------------------------
+Cluster::Cluster(double distance) {
+ this->distance = distance;
+ myCell = new Cell(pm, StructureProperties::POLY_VERTEX);
+ center = new Atom(pm, Cluster::atomIndex++);
+ Cluster::atomIndex++;
+ nrOfNewAtoms++;
+ //pm->addAtom(center);
+}
+
+Cluster::~Cluster() {
+ delete myCell;
+ delete center;
+}
+
+// -------------------- updateCenter ------------------------
+void Cluster::updateCenter() {
+ double pos[3];
+ double posC[3];
+ unsigned int size = myCell->getNumberOfStructures();
+
+ for (unsigned int j=0; j<3; j++)
+ posC[j] = 0.0;
+
+ for (unsigned int i=0; i<size; i++) {
+ ((Atom *)myCell->getStructure(i))->getPosition(pos);
+ for (unsigned int j=0; j<3; j++)
+ posC[j] += pos[j];
+ }
+
+ for (unsigned int j=0; j<3; j++)
+ posC[j] /= ((double)size);
+
+ center->setPosition(posC);
+}
+
+// -------------------- getCenter ------------------------
+Atom * Cluster::getCenter() {
+ return center;
+}
+
+// -------------------- getAtom ------------------------
+Atom * Cluster::getAtom(unsigned int id) {
+ return ((Atom*)myCell->getStructure(id));
+}
+
+// -------------------- nrOfAtoms ------------------------
+unsigned int Cluster::nrOfAtoms() {
+ return myCell->getNumberOfStructures();
+}
+
+// -------------------- addAtom ------------------------
+bool Cluster::addAtom(Atom *a) {
+ double posC[3];
+ center->getPosition(posC);
+ double pos[3];
+ a->getPosition(pos);
+ double dist = 0.0;
+ for (unsigned int i=0; i<3; i++)
+ dist += (posC[i]-pos[i])*(posC[i]-pos[i]);
+ dist = sqrt(dist);
+
+ if (nrOfAtoms()==0 || dist<distance) {
+ myCell->addStructure(a);
+ updateCenter();
+ return true;
+ } else {
+ return false;
+ }
+}
+
+
+// -------------------- insert ------------------------
+Cluster * insert(Atom *a) {
+ vector <Cluster *>::iterator it;
+
+ // look into allClusters for equivalence
+ it = allClusters.begin();
+ while (it!=allClusters.end() && !(*it)->addAtom(a))
+ it++;
+
+ // not found => insert
+ if (it==allClusters.end()) {
+ // no cluster found: create a new one
+ Cluster *c = new Cluster(precision);
+ c->addAtom(a);
+ allClusters.push_back(c);
+ return c;
+ } else {
+ return (*it);
+ }
+
+}
+
+// -------------------- update ------------------------
+void update(MultiComponent *mc) {
+ if (mc==NULL) {
+ cout << "0 cells)" << endl;
+ return;
+ }
+
+ cout << mc->getNumberOfCells() << " cells)" << endl;
+ unsigned int degeneratedCount=0;
+
+ // WARNING non-rentrant loop
+ for (unsigned int i=0; i<mc->getNumberOfCells(); i++) {
+ Cell *c = mc->getCell(i);
+ StructuralComponent *sc = c->getAtoms();
+ c->deleteAllStructures();
+ cout << '\r' << i << flush;
+ // remove previous list
+ for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
+ c->removeStructure(sc->getStructure(j));
+ }
+ // check it was done properly
+ if (c->getNumberOfStructures()>0) {
+ cout << "Cell #" << c->getIndex() << " cannot delete all atoms (still has " <<c->getNumberOfStructures() << ")" << endl;
+ }
+ // add new atoms
+ map<Atom *, Atom *>::iterator proxy;
+ for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
+ proxy = replacement.find((Atom *)sc->getStructure(j));
+ if (proxy==replacement.end()) {
+ // not found?!
+ cout << "Cell #" << c->getIndex() << " cannot find replacement for Atom#" << sc->getStructure(i)->getIndex() << endl;
+ } else {
+ c->addStructureIfNotIn(proxy->second);
+ }
+ }
+ // check that the cell did not degenerate
+ StructureProperties::GeometricType t = c->getType();
+ int normalSize = ((t == StructureProperties::LINE)?2:
+ ((t == StructureProperties::TRIANGLE)?3:
+ ((t == StructureProperties::QUAD)?4:
+ ((t == StructureProperties::TETRAHEDRON)?4:
+ ((t == StructureProperties::WEDGE)?6:
+ ((t == StructureProperties::HEXAHEDRON)?8:-1))))));
+ if (normalSize!=-1 && normalSize!=(int)c->getNumberOfStructures()) {
+ cout << "deleting degenerated Cell #" << c->getIndex() << ": it is a " <<
+ StructureProperties::toString(t) << " and should have " << normalSize <<
+ " atoms, but has now " << c->getNumberOfStructures() << flush;
+ degeneratedCount++;
+ c->getStructuralComponent(0)->removeStructure(c);
+ // a cell was deleted, as it is a non re-entrant loop, get back one index
+ i--;
+ }
+ }
+ cout << flush;
+ cout << degeneratedCount << " degenerated cells removed " << endl;
+}
+
+// -------------------- saveClusters ------------------------
+void saveClusters(string clusterFile) {
+ stringstream clusterOSS;
+ clusterOSS << precision;
+
+
+ string nonClusterFile = clusterFile;
+ unsigned int pLast = clusterFile.rfind(".");
+
+ if (pLast != string::npos) {
+ clusterFile.erase(pLast);
+ clusterFile += "-clusters-" + clusterOSS.str() + ".txt";
+ } else
+ clusterFile="clusters-" + clusterOSS.str() + ".txt";
+
+ pLast = nonClusterFile.rfind(".");
+ if (pLast != string::npos) {
+ nonClusterFile.erase(pLast);
+ nonClusterFile += "-non-clusters-" + clusterOSS.str() + ".txt";
+ } else
+ nonClusterFile = "non-clusters-" + clusterOSS.str() + ".txt";
+
+ cout << "-> please wait while saving cluster informations in " << clusterFile << " (" << pm->getNumberOfAtoms() - allClusters.size() << " clusters) and non-clusters in " << nonClusterFile << endl;
+ ofstream clusterOutputFile(clusterFile.c_str());
+ ofstream nonClusterOutputFile(nonClusterFile.c_str());
+ for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
+ if ((*it)->nrOfAtoms()>1) {
+ clusterOutputFile << (*it)->getCenter()->getIndex() << " : ";
+ for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++)
+ clusterOutputFile << (*it)->getAtom(i)->getIndex() << " ";
+ clusterOutputFile << endl;
+ } else {
+ nonClusterOutputFile << (*it)->getAtom(0)->getIndex() << endl;
+ }
+ }
+ clusterOutputFile.close();
+ nonClusterOutputFile.close();
+}
+
+// -------------------- optimize ------------------------
+void optimize(string clusterFile) {
+ StructuralComponent *atoms = pm->getAtoms();
+
+ // create clusters
+ for (unsigned int i=0; i<atoms->getNumberOfStructures(); i++) {
+ insert((Atom *) atoms->getStructure(i));
+ cout << '\r' << i << flush;
+ }
+ cout << endl;
+
+ cout << "found " << allClusters.size() << " clusters, for " << atoms->getNumberOfStructures() << " atoms" << endl;
+ cout << "-> please wait while removing " << atoms->getNumberOfStructures() - allClusters.size() << " atoms" << endl;
+
+ // create newAtoms with all atoms that are alone in their clusters and
+ // all cluster centers
+ StructuralComponent * newAtoms = new StructuralComponent(pm);
+ for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
+ if ((*it)->nrOfAtoms()==1) {
+ newAtoms->addStructure((*it)->getAtom(0));
+ replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(0), (*it)->getAtom(0)));
+ } else {
+ newAtoms->addStructure((*it)->getCenter());
+ // memorize replacements
+ for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++) {
+ replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(i), (*it)->getCenter()));
+ }
+ }
+ }
+
+ // save the clusters and non cluster
+ saveClusters(clusterFile);
+
+ // update all atoms using replacements
+ cout << "-> please wait while replacing atoms in exclusive components (";
+ update(pm->getExclusiveComponents());
+ cout << "-> please wait while replacing atoms in informative components (";
+ update(pm->getInformativeComponents());
+
+ // Use new atoms instead of atoms
+ cout << "-> please wait while changing atoms" << endl;
+ pm->setAtoms(newAtoms, false); // do not delete old atom list!
+}
+
+
+/// class facet to old and compare facet
+class Facet {
+public:
+ /// create a facet using size nodes and their indexes
+ Facet(unsigned int size, unsigned int id[]);
+
+ /// destructor
+ virtual ~Facet();
+
+ /// if it is the same (equivalent) facet, increment used (return true if equivalence)
+ bool testEquivalence(unsigned int size, unsigned int id[]);
+
+ /// return the corresponding PML cell
+ Cell * getCell(PhysicalModel *) const;
+
+ /// print on stdout
+ void debug();
+
+ /// get the number of time it is being used
+ unsigned int getUsed() const;
+
+private:
+ /// is this atom index present in this facet (no check on the order)
+ bool isIn(unsigned int) const;
+
+ /// the facet atom indexes
+ unsigned int *id;
+
+ /// nr of atoms composing the facet (3 = triangle, 4 = quad)
+ unsigned int size;
+
+ /// nr of times the facet is used
+ unsigned int used;
+};
+
+
+// -------------------- constructor/destructor ------------------------
+Facet::Facet(unsigned int size, unsigned int id[]) {
+ this->size = size;
+ this->id = new unsigned int[size];
+ for (unsigned int i=0; i<size; i++)
+ this->id[i]=id[i];
+ used = 1;
+}
+
+Facet::~Facet() {
+ delete [] id;
+}
+
+// -------------------- debug ------------------------
+void Facet::debug() {
+ switch (size) {
+ case 3:
+ cout << "triangle <";
+ break;
+ case 4:
+ cout << "quad <";
+ break;
+ default:
+ cout << "unknown facet <";
+ break;
+ }
+ unsigned int i;
+ for (i=0; i<size-1; i++)
+ cout << id[i] << ",";
+ cout << id[i] << "> used " << used << " times" << endl;
+}
+
+
+// -------------------- testEquivalence ------------------------
+bool Facet::testEquivalence(unsigned int size, unsigned int id[]) {
+ if (this->size != size) {
+ return false;
+ } else {
+ unsigned int i=0;
+ while (i<size && isIn(id[i])) {
+ i++;
+ }
+
+ if (i==size)
+ used++;
+
+ return (i==size);
+ }
+}
+
+// -------------------- isIn ------------------------
+bool Facet::isIn(unsigned int index) const {
+ unsigned int i=0;
+ while (i<size && id[i]!=index)
+ i++;
+ return (i!=size);
+}
+
+// -------------------- getCell ------------------------
+Cell * Facet::getCell(PhysicalModel *pm) const {
+ Cell *c;
+ // create the correct geometric type cell
+ switch (size) {
+ case 3:
+ c = new Cell(NULL, StructureProperties::TRIANGLE);
+ break;
+ case 4:
+ c = new Cell(NULL, StructureProperties::QUAD);
+ break;
+ default:
+ c=NULL;
+ }
+ // get the atom corresponding to the index stored in id
+ // and insert them in the cell
+ for (unsigned int i=0; i<size; i++) {
+ Atom *a = pm->getAtom(id[i]);
+ if (a==NULL) {
+ cout << "Argh! Cannot find atom #" << id[i] << endl;
+ } else {
+ c->addStructureIfNotIn(a);
+ }
+ }
+ return c;
+}
+
+// -------------------- getUsed ------------------------
+unsigned int Facet::getUsed() const {
+ return used;
+}
+
+// -------------------- Neigborhood Map ------------------------
+// associative map of all the neighboors for a given index of an atom
+map<unsigned int, Cell*> neighMap;
+
+// -------------------- getIterator ------------------------
+// get the iterator on the correct atom index in the neighMap
+// if non existant create it
+map<unsigned int, Cell*>::iterator getIterator(unsigned int index) {
+ map<unsigned int, Cell*>::iterator it;
+
+ // find atom index in the map
+ it = neighMap.find(index);
+
+ // not present, insert a new cell, associated with index
+ if (it==neighMap.end()) {
+ // instanciate
+ Cell *nc = new Cell(NULL, StructureProperties::POLY_VERTEX);
+ // name
+ stringstream n(std::stringstream::out);
+ n << "Atom #" << index << '\0';
+ ((Structure *)nc)->setName(n.str());
+ // insert the new cell in the map
+ pair<map<unsigned int, Cell*>::iterator, bool> ins = neighMap.insert(map<unsigned int, Cell*>::value_type(index, nc));
+ // it show where it has been inserted
+ it = ins.first;
+ }
+
+ return it;
+}
+
+// -------------------- generateNeighborhood ------------------------
+/// generate the neighborhoods
+StructuralComponent * generateNeighborhood(StructuralComponent *sc) {
+ // an iterator
+ map<unsigned int, Cell*>::iterator it;
+
+ // for each cells recreate neighborhoods
+ for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
+ // c is an hexahedron
+ Cell *c = sc->getCell(i);
+
+ switch(c->getType()) {
+ case StructureProperties::TRIANGLE:
+ if (c->getNumberOfStructures()!=3) {
+ cout << "cell #" << c->getIndex() << " of type TRIANGLE does not contains 3 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // TRIANGLE
+ // 1 facet: lines:
+ // / \ 0,1,2 0,1
+ // / \ 1,2
+ // 2-----0 2,0
+
+ // -- add atom 0 neighbors
+ // get neighbors list for atom 0
+ it = getIterator(c->getStructure(0)->getIndex());
+ // it.second is the cell containing all the atoms that are neighbors of atom 0
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+
+ // -- add atom 1 neighbors
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ // -- add atom 2 neighbors
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ }
+ break;
+ case StructureProperties::QUAD:
+ if (c->getNumberOfStructures()!=4) {
+ cout << "cell #" << c->getIndex() << " of type QUAD does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // QUAD
+ // 3--------2 lines:
+ // | | 0,1
+ // | | 1,2
+ // | | 2,3
+ // 0--------1 3,0
+
+ // -- add atom 0 neighbors
+ // get neighbors list for atom 0
+ it = getIterator(c->getStructure(0)->getIndex());
+ // it.second is the cell containing all the atoms that are neighbors of atom 0
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+
+ // -- add atom 1 neighbors
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ // -- add atom 2 neighbors
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+
+ // -- add atom 3 neighbors
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ // complete neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ }
+ break;
+ case StructureProperties::WEDGE:
+ if (c->getNumberOfStructures()!=6) {
+ cout << "cell #" << c->getIndex() << " of type WEDGE does not contains 6 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // WEDGE
+ // 1-------------4 facets (quad): facets (triangles): lines:
+ // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
+ // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
+ // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
+ // \ \ \ \ 0,3 5,3
+ // \ 2-----------\--5 1,4
+ it = getIterator(c->getStructure(0)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+
+ it = getIterator(c->getStructure(4)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+
+ it = getIterator(c->getStructure(5)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ }
+ break;
+
+ case StructureProperties::TETRAHEDRON:
+ if (c->getNumberOfStructures()!=4) {
+ cout << "cell #" << c->getIndex() << " of type TETRAHEDRON does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
+ } else {
+ // tetrahedron are defined as follow:
+ // 3 triangular base: 0,1,2
+ // /| \ -
+ // / | \ So to generate the neighborhodd,
+ // 2__|___\1 we just have to loop on all the
+ // \ | / atoms and add them their corresponding neigh
+ // \ | / This is easy as in a tetrahedron all atoms
+ // \|/ are neighbors to all atoms...
+ // 0
+ for (unsigned int j=0; j<4; j++) {
+ // get current atom
+ it = getIterator(c->getStructure(j)->getIndex());
+ // add all others to its neighborhood
+ (*it).second->addStructureIfNotIn(c->getStructure((j+1)%4));
+ (*it).second->addStructureIfNotIn(c->getStructure((j+2)%4));
+ (*it).second->addStructureIfNotIn(c->getStructure((j+3)%4));
+ }
+ }
+ break;
+
+ case StructureProperties::HEXAHEDRON:
+ if (c->getNumberOfStructures()!=8) {
+ cout << "cell #" << c->getIndex() << " of type HEXAHEDRON does not contains 8 atoms (found only " << c->getNumberOfStructures() << "). Cell skiped." << endl;
+ } else {
+ // hexahedron are defined as follow:
+ // 2-------------6
+ // / \ / \ So to generate the neighborhood,
+ // / \ / \ we just have to loop on all the
+ // 1-----\-------5 \ atoms and add them their corresponding neigh
+ // \ 3-------------7
+ // \ / \ /
+ // \ / \ /
+ // 0-------------4
+
+ // atom 0 is neigbor of atoms : 1, 3, 4
+ it = getIterator(c->getStructure(0)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+
+ // atom 1 is neigbor of atoms : 0, 2, 5
+ it = getIterator(c->getStructure(1)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+
+ // atom 2 is neigbor of atoms : 1, 3, 6
+ it = getIterator(c->getStructure(2)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+
+ // atom 3 is neigbor of atoms : 0, 2, 7
+ it = getIterator(c->getStructure(3)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 4 is neigbor of atoms : 0, 5, 7
+ it = getIterator(c->getStructure(4)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(0));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 5 is neigbor of atoms : 1, 4, 6
+ it = getIterator(c->getStructure(5)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(1));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+
+ // atom 6 is neigbor of atoms : 2, 5, 7
+ it = getIterator(c->getStructure(6)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(2));
+ (*it).second->addStructureIfNotIn(c->getStructure(5));
+ (*it).second->addStructureIfNotIn(c->getStructure(7));
+
+ // atom 7 is neigbor of atoms : 3, 4, 6
+ it = getIterator(c->getStructure(7)->getIndex());
+ (*it).second->addStructureIfNotIn(c->getStructure(3));
+ (*it).second->addStructureIfNotIn(c->getStructure(4));
+ (*it).second->addStructureIfNotIn(c->getStructure(6));
+ }
+ break;
+ default:
+ cout << "Cannot generate neighborhood for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
+ break;
+ }
+ }
+
+ // now that we have in neighMap all the neighborhoods, just add them in a new SC
+ StructuralComponent *neigh = new StructuralComponent(NULL, "Neighborhoods");
+
+ for (it=neighMap.begin(); it!=neighMap.end(); it++) {
+ neigh->addStructure((*it).second);
+ }
+
+ return neigh;
+}
+
+// -------------------- All border facets ------------------------
+/// storing all the facets
+vector <Facet *> allFacets;
+
+// -------------------- equivalent ------------------------
+// check if equivalent of already existing facet
+void equivalent(int size, unsigned int id[]) {
+ vector <Facet *>::iterator it;
+
+ // look into allFacets for equivalence
+ it = allFacets.begin();
+ while (it!=allFacets.end() && !(*it)->testEquivalence(size, id))
+ it++;
+
+ // not found => insert
+ if (it==allFacets.end())
+ allFacets.push_back(new Facet(size,id));
+}
+
+
+// -------------------- generateExternalSurface ------------------------
+/// generate the outside surface
+MultiComponent * generateExternalSurface(StructuralComponent *sc) {
+ // outside/external facets are facets that are used in only one element
+
+ // for each cells update the counter
+ for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
+ // c is an hexahedron
+ Cell *c = sc->getCell(i);
+
+ // Facets have to be described in anticlockwise (trigonometrywise) when
+ // looking at them from outside
+ switch(c->getType()) {
+ case StructureProperties::TRIANGLE: {
+ // TRIANGLE (as viewed from outside)
+ // 1 facet: lines:
+ // / \ 0,1,2 0,1
+ // / \ 1,2
+ // 2-----0 2,0
+ unsigned idT[3];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(1)->getIndex();
+ idT[2]=c->getStructure(2)->getIndex();
+ equivalent(3,idT);
+ break;
+ }
+ case StructureProperties::QUAD: {
+ // QUAD
+ // 3--------2 lines:
+ // | | 0,1
+ // | | 1,2
+ // | | 2,3
+ // 0--------1 3,0
+
+ unsigned idT[4];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(1)->getIndex();
+ idT[2]=c->getStructure(2)->getIndex();
+ idT[3]=c->getStructure(3)->getIndex();
+ equivalent(4,idT);
+ break;
+ }
+ case StructureProperties::WEDGE: {
+ // WEDGE
+ // 1-------------4 facets (quad): facets (triangles): lines:
+ // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
+ // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
+ // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
+ // \ \ \ \ 0,3 5,3
+ // \ 2-----------\--5 1,4
+ unsigned int idQ[4];
+ idQ[0]=c->getStructure(2)->getIndex();
+ idQ[1]=c->getStructure(5)->getIndex();
+ idQ[2]=c->getStructure(4)->getIndex();
+ idQ[3]=c->getStructure(1)->getIndex();
+ equivalent(4,idQ);
+
+ idQ[0]=c->getStructure(0)->getIndex();
+ idQ[1]=c->getStructure(1)->getIndex();
+ idQ[2]=c->getStructure(4)->getIndex();
+ idQ[3]=c->getStructure(3)->getIndex();
+ equivalent(4,idQ);
+
+ idQ[0]=c->getStructure(2)->getIndex();
+ idQ[1]=c->getStructure(0)->getIndex();
+ idQ[2]=c->getStructure(3)->getIndex();
+ idQ[3]=c->getStructure(5)->getIndex();
+ equivalent(4,idQ);
+
+ unsigned int idT[3];
+ idT[0]=c->getStructure(0)->getIndex();
+ idT[1]=c->getStructure(2)->getIndex();
+ idT[2]=c->getStructure(1)->getIndex();
+ equivalent(3,idT);
+
+ idT[0]=c->getStructure(3)->getIndex();
+ idT[1]=c->getStructure(4)->getIndex();
+ idT[2]=c->getStructure(5)->getIndex();
+ equivalent(3,idT);
+ break;
+ }
+ case StructureProperties::TETRAHEDRON: {
+ // tetrahedron are defined as follow:
+ // 3
+ // /| \ So to generate the facet list,
+ // / | \ we just have to loop on all the
+ // 1__|___\ 2 tetrahedron and add the corresponding 4 facets :
+ // \ | / f0=0,1,2 f2=0,3,1
+ // \ | / f1=0,2,3 f3=2,1,3
+ // \|/
+ // 0
+ unsigned int id[3];
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(2)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(2)->getIndex();
+ id[2]=c->getStructure(3)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(3)->getIndex();
+ id[2]=c->getStructure(1)->getIndex();
+ equivalent(3,id);
+
+ id[0]=c->getStructure(2)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(3)->getIndex();
+ equivalent(3,id);
+ break;
+ }
+
+ case StructureProperties::HEXAHEDRON: {
+ // hexahedron are defined as follow:
+ // 2-------------6
+ // / \ . \ So to generate the facet list,
+ // / \ / \ we just have to loop on all the
+ // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
+ // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
+ // \ / \ / f1=0,4,7,3 f4=1,2,6,5
+ // \ / . / f2=0,1,5,4 f5=4,5,6,7
+ // 0-------------4
+
+ unsigned int id[4];
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(3)->getIndex();
+ id[2]=c->getStructure(2)->getIndex();
+ id[3]=c->getStructure(1)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(4)->getIndex();
+ id[2]=c->getStructure(7)->getIndex();
+ id[3]=c->getStructure(3)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(0)->getIndex();
+ id[1]=c->getStructure(1)->getIndex();
+ id[2]=c->getStructure(5)->getIndex();
+ id[3]=c->getStructure(4)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(3)->getIndex();
+ id[1]=c->getStructure(7)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(2)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(1)->getIndex();
+ id[1]=c->getStructure(2)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(5)->getIndex();
+ equivalent(4,id);
+
+ id[0]=c->getStructure(4)->getIndex();
+ id[1]=c->getStructure(5)->getIndex();
+ id[2]=c->getStructure(6)->getIndex();
+ id[3]=c->getStructure(7)->getIndex();
+ equivalent(4,id);
+ break;
+ }
+ default:
+ cout << "Cannot generate sub facets for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
+ break;
+ }
+ }
+
+ // now that we have in facetMap all the facet and the number of times they have been used
+ // just add in a new SC all the one that are used only once
+ StructuralComponent *facet = new StructuralComponent(NULL, "extern");
+
+ for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++) {
+ //(*it)->debug();
+ if ((*it)->getUsed()==1) // used only once
+ facet->addStructure((*it)->getCell(sc->getPhysicalModel()));
+ }
+
+ // delete all facets
+ for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++)
+ delete (*it);
+
+ // add incompressibility constraint parameter
+ facet->getProperties()->set("incompressibility", true);
+
+ // create the enclosed volume
+ MultiComponent *mc = new MultiComponent(NULL, "Enclosed Volumes");
+ mc->addSubComponent(facet);
+
+ // return the SC
+ return mc;
+}
+
+
+
+// -------------------- vtk2pml ------------------------
+string vtk2pml(string filename) {
+ // create output file name
+ string outFilename = filename;
+
+ unsigned int pLast = outFilename.rfind ( "." );
+ if ( pLast != string::npos ) {
+ outFilename.erase ( pLast );
+ }
+ outFilename += "0.pml";
+
+ // read the vtk file
+ vtkFile.open ( filename.c_str() );
+
+ if ( !vtkFile ) {
+ cerr << "Error: Can't open the file named " << filename << endl;
+ exit ( 1 );
+ }
+
+ ofstream outputFile ( outFilename.c_str() );
+
+ cout << "Transforming vtk to pml..." << endl;
+ outputFile << "<!-- Created by vtk2pml (c) E Promayon, TIMC (c) 2009 -->" << endl;
+
+ outputFile << "<physicalModel name=\"from vtk\" >" << endl;
+
+ // atoms
+ // looking for "POINTS n float"
+ unsigned int nAtoms = getCountFromDirective ( "POINTS" );
+ //cout << "Found " << nAtoms << " atoms." << endl;
+
+ outputFile << "<atoms>" << endl;
+
+ outputFile << "<structuralComponent name=\"vertices\">" << endl;
+
+ double x, y, z;
+
+ for ( unsigned int i=1; i<=nAtoms; i++ ) {
+ // read position
+ vtkFile >> x;
+ vtkFile >> y;
+ vtkFile >> z;
+ // write atom
+ outputFile << "<atom>" << endl;
+ // indexes start at 0
+ outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
+ outputFile << "</atom>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+
+ outputFile << "</atoms>" << endl;
+
+ cout << "-> created " << nAtoms << " atoms" << endl;
+
+ // regions
+ outputFile << "<exclusiveComponents>" << endl;
+ outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
+ outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"1\" />" << endl;
+ outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
+
+ for ( unsigned int i=1; i<=nAtoms; i++ )
+ outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
+
+ outputFile << "</cell>" << endl;
+
+ outputFile << "</structuralComponent>" << endl;
+
+ cout << "-> created region" << endl;
+
+// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
+ unsigned int nPolygons = getCountFromDirective ( "POLYGONS" );
+
+ outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+
+ outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ cout << "-> creating polygons (nb of polygons to read=" << nPolygons << ")" << endl;
+
+ int id;
+ int nPoints;
+
+ for ( unsigned int i=0; i<nPolygons; i++ ) {
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties type=\"";
+ vtkFile >> nPoints;
+
+ switch (nPoints) {
+ case 3:
+ default:
+ outputFile << "TRIANGLE\" />" << endl;
+ break;
+ }
+
+ for ( unsigned int j=0; j<nPoints; j++ ) {
+ vtkFile >> id;
+ outputFile << "<atomRef index=\"" << id << "\" />" << endl;
+ }
+
+ /* // discard the next "offset" number of integer
+ for ( unsigned int j=0; j<offset; j++ )
+ vtkFile >> id;
+ */
+ outputFile << "</cell>" << endl;
+ }
+
+ cout << "...finished (" << nPolygons << " polygons created)" << endl;
+
+ cout << "Results in " << outFilename << endl;
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</multiComponent>" << endl;
+ outputFile << "</exclusiveComponents>" << endl;
+ outputFile << "</physicalModel>" <<endl;
+
+ outputFile.close();
+
+ return outFilename;
+}
+
+
+// -------------------- optimizeMesh ------------------------
+string optimizeMesh(string filename, double precision) {
+ try {
+ // read the pml
+ cout << "-> please wait while opening " << filename << " for optimizing precision " << precision << endl;
+ pm = new PhysicalModel(filename.c_str());
+
+ cout << "-> please wait while optimizing " << pm->getNumberOfAtoms() << " atoms..." << endl;
+
+ optimize(filename);
+
+ // save the result
+ stringstream clusterOSS;
+ clusterOSS << precision;
+ unsigned int pLast = filename.rfind(".")-1;
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ }
+ filename += "1.pml";
+
+ cout << "-> please wait while saving " << filename << " (" << nrOfNewAtoms << " new atoms)" << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm->setName(pm->getName()+" optimized for "+clusterOSS.str());
+ // do not optimize output (do not touch cell and atom id)
+ pm->xmlPrint(outputFile, false);
+ outputFile.close();
+
+ delete pm;
+
+ return filename;
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+
+ return "";
+
+}
+
+// -------------------- elementsToNeighborhood ------------------------
+string elementsToNeighborhood(string filename) {
+
+ try {
+ // read the pml
+ cout << "-> please wait while reading " << filename << " for adding neighborhood/enclosed volumes" << endl;
+ PhysicalModel pm(filename.c_str());
+
+ // find the structural component "Elements" in the exclusive components
+ Component * c = pm.getComponentByName("Elements");
+ if (!c) {
+ throw PMLAbortException("Cannot find any component named \"Elements\"");
+ }
+
+ // check if it is a correct one
+ if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
+ throw PMLAbortException("Cannot translate the \"Elements\" component: not exclusive or not a structural component.");
+ }
+
+ // check if c is made of hexahedron
+ StructuralComponent *sc = (StructuralComponent *) c;
+ if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
+ sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON &&
+ sc->getCell(0)->getType()!=StructureProperties::WEDGE &&
+ sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
+ sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
+ throw PMLAbortException("Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON, WEDGE, TRIANGLE, QUAD or TETRAHEDRON. Exiting");
+ }
+
+ // now, we have the right component, let's do some work...
+ cout << "-> please wait while generating neighborhood" << endl;
+ StructuralComponent * neighborhoods = generateNeighborhood(sc);
+ cout << "-> please wait while generating external surface" << endl;
+ MultiComponent * polyhedrons = generateExternalSurface(sc);
+
+ // add the new SC to the informative component
+ if (neighborhoods)
+ pm.getExclusiveComponents()->addSubComponent(neighborhoods);
+ if (polyhedrons)
+ pm.getExclusiveComponents()->addSubComponent(polyhedrons);
+
+ // save the result
+ unsigned int pLast = filename.rfind(".") - 1;
+ if (pLast != string::npos) {
+ filename.erase(pLast);
+ }
+ filename += ".pml";
+
+ cout << "-> please wait while saving result in " << filename << endl;
+
+ ofstream outputFile(filename.c_str());
+ pm.setName(pm.getName()+" neighborhoods");
+ // do not change cell and atom id
+ pm.xmlPrint(outputFile,false);
+
+ return filename;
+
+ } catch(PMLAbortException ae) {
+ cout << "AbortException: Physical model aborted:" << endl ;
+ cout << ae.what() << endl;
+ }
+
+ return "";
+}
+
+int main ( int argc, char ** argv ) {
+
+ if (argc!=3) {
+ cout << "Usage:" << endl;
+ cout << "\t" << argv[0] << " file.vtk precision" << endl;
+ cout << "output to: file.pml" << endl;
+ cout << "precision is a float (each cluster of points included in a sphere of radius precisious will be merged)" << endl;
+ cout << "PML " << PhysicalModel::VERSION << endl;
+ exit(-1);
+ }
+
+ // get the vtk filename
+ string filename ( argv[1] );
+ precision = atof(argv[2]);
+
+ string pml = vtk2pml(filename);
+
+ string optimizedPml = optimizeMesh(pml, precision);
+
+ string modelPml = elementsToNeighborhood(optimizedPml);
+
+ cout << endl;
+ cout << "Finished. Results is in " << modelPml << endl;
+}
diff --git a/modeling/libraries/pml/tools/vtk2pml/CMakeLists.txt b/modeling/applications/pmltools/vtk2pml/CMakeLists.txt
similarity index 100%
rename from modeling/libraries/pml/tools/vtk2pml/CMakeLists.txt
rename to modeling/applications/pmltools/vtk2pml/CMakeLists.txt
diff --git a/modeling/applications/pmltools/vtk2pml/vtk2pml.cpp b/modeling/applications/pmltools/vtk2pml/vtk2pml.cpp
new file mode 100644
index 0000000..cd4eb19
--- /dev/null
+++ b/modeling/applications/pmltools/vtk2pml/vtk2pml.cpp
@@ -0,0 +1,237 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+//
+// C++ Implementation: vtk2pml
+//
+// Description: very simple vtk unstructured grid export to pml
+// Note: this transformation is done manually, without the help of the VTK API
+// Pros: no dependencies
+// Cons: lots of things/case/vtk types not take into account, very simple transformation
+//
+// the first argument is the name of a vtk file
+
+#include <iostream>
+#include <string>
+#include <fstream>
+#include <cstdlib>
+#include <sstream>
+
+using namespace std;
+
+// the input .obj file
+std::ifstream vtkFile;
+unsigned lineNr;
+bool eof;
+
+typedef struct {
+ string directive;
+ string data;
+ bool ok;
+} ObjLine;
+
+ObjLine currentLine;
+
+// -------------------- getNext ------------------------
+// get the next current line
+void getNext() {
+ char l[200];
+ string line;
+ currentLine.ok = false;
+
+ while ( !eof && !currentLine.ok ) {
+ eof = ! ( vtkFile.getline ( l,199 ) );
+ lineNr++;
+
+ if ( l[0]!='#' ) {
+ line = l;
+
+ unsigned int space = line.find ( ' ' );
+
+ if ( space != string::npos && space != 0 ) {
+ currentLine.directive = line.substr ( 0,space );
+ currentLine.data = line.substr ( space+1 );
+ currentLine.ok = true;
+ }
+ }
+ }
+
+}
+
+
+// -------------------- getCountFromDirective ------------------------
+int getCountFromDirective ( string directive ) {
+ // go to the first directive
+ while ( !eof && currentLine.directive!=directive ) {
+// cout << "l=" << currentLine.directive << endl;
+ getNext();
+ }
+
+ if ( !eof )
+ return atoi ( currentLine.data.c_str() );
+ else
+ return 0;
+}
+
+
+// -------------------- getVector ------------------------
+// get the double 3D vector in the current data
+void getVector ( double d[3] ) {
+ stringstream data ( currentLine.data, std::stringstream::in );
+
+ for ( unsigned int i=0; i<3; i++ )
+ data >> d[i];
+}
+
+int main ( int argc, char ** argv ) {
+
+ if ( argc!=2 ) {
+ cout << "usage: " << argv[0] << endl;
+ cout << "\t" << argv[0] << " file.vtk" << endl;
+ exit ( -1 );
+ }
+
+ // get the vtk filename
+ string filename ( argv[1] );
+
+ // create output file name
+ string outFilename = filename;
+
+ unsigned int pLast = outFilename.rfind ( "." );
+
+ if ( pLast != string::npos ) {
+ outFilename.erase ( pLast );
+ outFilename += ".pml";
+ } else
+ outFilename += "-pml";
+
+ // read the vtk file
+ vtkFile.open ( filename.c_str() );
+
+ if ( !vtkFile ) {
+ cerr << "Error: Can't open the file named " << filename << endl;
+ exit ( 1 );
+ }
+
+ ofstream outputFile ( outFilename.c_str() );
+
+ cout << "Transforming vtk to pml..." << endl;
+ outputFile << "<!-- Created by vtk2pml (c) E Promayon, TIMC (c) 2009 -->" << endl;
+
+ outputFile << "<physicalModel name=\"from vtk\" >" << endl;
+
+ // atoms
+ // looking for "POINTS n float"
+ unsigned int nAtoms = getCountFromDirective ( "POINTS" );
+ //cout << "Found " << nAtoms << " atoms." << endl;
+
+ outputFile << "<atoms>" << endl;
+
+ outputFile << "<structuralComponent name=\"vertices\">" << endl;
+
+ double x, y, z;
+
+ for ( unsigned int i=1; i<=nAtoms; i++ ) {
+ // read position
+ vtkFile >> x;
+ vtkFile >> y;
+ vtkFile >> z;
+ // write atom
+ outputFile << "<atom>" << endl;
+ // indexes start at 0
+ outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
+ outputFile << "</atom>" << endl;
+ }
+
+ outputFile << "</structuralComponent>" << endl;
+
+ outputFile << "</atoms>" << endl;
+
+ cout << "-> created " << nAtoms << " atoms" << endl;
+
+ // regions
+ outputFile << "<exclusiveComponents>" << endl;
+ outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
+ outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
+ outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
+
+ for ( unsigned int i=1; i<=nAtoms; i++ )
+ outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
+
+ outputFile << "</cell>" << endl;
+
+ outputFile << "</structuralComponent>" << endl;
+
+ cout << "-> created region" << endl;
+
+// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
+ unsigned int nPolygons = getCountFromDirective ( "POLYGONS" );
+
+ outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
+
+ outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
+
+ cout << "-> creating polygons (nb of polygons to read=" << nPolygons << ")" << endl;
+
+ int id;
+ int nPoints;
+
+ for ( unsigned int i=0; i<nPolygons; i++ ) {
+ outputFile << "<cell>" << endl;
+ outputFile << "<cellProperties type=\"";
+ vtkFile >> nPoints;
+
+ switch (nPoints) {
+ case 3:
+ default:
+ outputFile << "TRIANGLE\" />" << endl;
+ break;
+ }
+
+ for ( unsigned int j=0; j<nPoints; j++ ) {
+ vtkFile >> id;
+ outputFile << "<atomRef index=\"" << id << "\" />" << endl;
+ }
+
+ /* // discard the next "offset" number of integer
+ for ( unsigned int j=0; j<offset; j++ )
+ vtkFile >> id;
+ */
+ outputFile << "</cell>" << endl;
+ }
+
+ cout << "...finished (" << nPolygons << " polygons created)" << endl;
+
+ cout << "Results in " << outFilename << endl;
+
+ outputFile << "</structuralComponent>" << endl;
+ outputFile << "</multiComponent>" << endl;
+ outputFile << "</exclusiveComponents>" << endl;
+ outputFile << "</physicalModel>" <<endl;
+
+ outputFile.close();
+
+}
diff --git a/modeling/components/CMakeLists.txt b/modeling/components/CMakeLists.txt
index 1df7bed..8a373bf 100644
--- a/modeling/components/CMakeLists.txt
+++ b/modeling/components/CMakeLists.txt
@@ -7,6 +7,6 @@
# In your CMakeLists.txt, use the camitk_extension(COMPONENT_EXTENSION ...) macro apropriately
# Add subdirectories in CMake project, manually => handling dependencies
-camitk_add_subdirectory(physicalmodel)
+camitk_add_subdirectory(pmlcomponent)
camitk_add_subdirectory(mmlcomponent)
diff --git a/modeling/components/MonitoringDialog.ui b/modeling/components/MonitoringDialog.ui
deleted file mode 100644
index 9f72020..0000000
--- a/modeling/components/MonitoringDialog.ui
+++ /dev/null
@@ -1,744 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>MonitoringDialog</class>
- <widget class="QWidget" name="MonitoringDialog">
- <property name="enabled">
- <bool>true</bool>
- </property>
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>706</width>
- <height>768</height>
- </rect>
- </property>
- <property name="cursor">
- <cursorShape>ArrowCursor</cursorShape>
- </property>
- <property name="mouseTracking">
- <bool>false</bool>
- </property>
- <property name="focusPolicy">
- <enum>Qt::NoFocus</enum>
- </property>
- <property name="windowTitle">
- <string>Simulation</string>
- </property>
- <layout class="QGridLayout">
- <property name="margin">
- <number>0</number>
- </property>
- <property name="spacing">
- <number>0</number>
- </property>
- <item row="0" column="0">
- <widget class="QFrame" name="frame">
- <property name="frameShape">
- <enum>QFrame::NoFrame</enum>
- </property>
- <property name="frameShadow">
- <enum>QFrame::Plain</enum>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout_4">
- <item>
- <widget class="QTabWidget" name="monitoringTabs">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="currentIndex">
- <number>0</number>
- </property>
- <widget class="QWidget" name="simulationTab">
- <attribute name="title">
- <string>Simulation</string>
- </attribute>
- <layout class="QVBoxLayout" name="verticalLayout">
- <item>
- <layout class="QGridLayout" name="gridLayout_1">
- <item row="1" column="0">
- <widget class="QLabel" name="label_2">
- <property name="text">
- <string>dt:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="2">
- <widget class="QLabel" name="label_3">
- <property name="text">
- <string>refresh dt:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="3">
- <widget class="QLineEdit" name="refreshLineEdit"/>
- </item>
- <item row="2" column="0">
- <widget class="QLabel" name="label_6">
- <property name="text">
- <string>time:</string>
- </property>
- </widget>
- </item>
- <item row="2" column="2">
- <widget class="QLabel" name="label_8">
- <property name="text">
- <string>current fps:</string>
- </property>
- </widget>
- </item>
- <item row="2" column="1">
- <widget class="QLineEdit" name="timeLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="1" column="1">
- <widget class="QLineEdit" name="dtLineEdit"/>
- </item>
- <item row="3" column="2">
- <widget class="QLabel" name="label_9">
- <property name="text">
- <string>average fps:</string>
- </property>
- </widget>
- </item>
- <item row="3" column="3">
- <widget class="QLineEdit" name="averageFpsLineEdit">
- <property name="palette">
- <palette>
- <active>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </active>
- <inactive>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </inactive>
- <disabled>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </disabled>
- </palette>
- </property>
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="2" column="3">
- <widget class="QLineEdit" name="currentFpsLineEdit">
- <property name="palette">
- <palette>
- <active>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </active>
- <inactive>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </inactive>
- <disabled>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </disabled>
- </palette>
- </property>
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <spacer name="verticalSpacer_2">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>37</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <layout class="QGridLayout" name="gridLayout_2">
- <item row="0" column="0">
- <widget class="QLabel" name="label_4">
- <property name="text">
- <string>pml:</string>
- </property>
- </widget>
- </item>
- <item row="0" column="1">
- <widget class="QLineEdit" name="pmlLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="0" column="2">
- <widget class="QPushButton" name="pmlBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- <item row="1" column="0">
- <widget class="QLabel" name="label_5">
- <property name="text">
- <string>lml:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="1">
- <widget class="QLineEdit" name="lmlLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="1" column="2">
- <widget class="QPushButton" name="lmlBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <spacer name="verticalSpacer_3">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>36</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </widget>
- <widget class="QWidget" name="monitorsTab">
- <attribute name="title">
- <string>Monitors</string>
- </attribute>
- <layout class="QHBoxLayout" name="horizontalLayout_6">
- <item>
- <widget class="QTableWidget" name="monitorsTable">
- <property name="autoScroll">
- <bool>true</bool>
- </property>
- <property name="editTriggers">
- <set>QAbstractItemView::NoEditTriggers</set>
- </property>
- <property name="selectionBehavior">
- <enum>QAbstractItemView::SelectRows</enum>
- </property>
- <property name="textElideMode">
- <enum>Qt::ElideRight</enum>
- </property>
- <property name="showGrid">
- <bool>false</bool>
- </property>
- <property name="sortingEnabled">
- <bool>true</bool>
- </property>
- <property name="columnCount">
- <number>5</number>
- </property>
- <attribute name="horizontalHeaderStretchLastSection">
- <bool>true</bool>
- </attribute>
- <column>
- <property name="text">
- <string>Type</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Target</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Start At</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Stop At</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Reference</string>
- </property>
- </column>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_2">
- <item>
- <widget class="QPushButton" name="monitorsAddPushButton">
- <property name="text">
- <string>Add</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_5">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="monitorsEditPushButton">
- <property name="text">
- <string>Edit</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="monitorsRemovePushButton">
- <property name="text">
- <string>Remove</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_4">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_6">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_7">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- <widget class="QWidget" name="sCriteriaTab">
- <attribute name="title">
- <string>Stopping Criteria</string>
- </attribute>
- <layout class="QHBoxLayout" name="horizontalLayout_7">
- <item>
- <widget class="QTreeWidget" name="sCriteriaTreeWidget">
- <property name="editTriggers">
- <set>QAbstractItemView::NoEditTriggers</set>
- </property>
- <property name="columnCount">
- <number>3</number>
- </property>
- <column>
- <property name="text">
- <string>Type</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Condition</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Scope</string>
- </property>
- </column>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_3">
- <item>
- <widget class="QPushButton" name="sCriteriaAddpushButton">
- <property name="text">
- <string>Add</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_8">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="sCriteriaEditPushButton">
- <property name="text">
- <string>Edit</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="sCriteriaRemovePushButton">
- <property name="text">
- <string>Remove</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_9">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_10">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_11">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_5">
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout_8">
- <item>
- <widget class="QLabel" name="label_7">
- <property name="text">
- <string>mml in:</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QLineEdit" name="mmlInLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="mmlInBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <widget class="QPushButton" name="mmlInSavePushButton">
- <property name="text">
- <string>Save mml in</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <widget class="QPushButton" name="mmlOutSavePushButton">
- <property name="text">
- <string>Save mml out</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="csvSavePushButton">
- <property name="text">
- <string>Save output as .csv</string>
- </property>
- </widget>
- </item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout_9">
- <item>
- <widget class="QPushButton" name="rewindPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>rewind simulation</string>
- </property>
- <property name="whatsThis">
- <string>rewind simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_rew</normaloff>:/player_rew</iconset>
- </property>
- <property name="shortcut">
- <string>Ctrl+R</string>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- <property name="flat">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <spacer>
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeType">
- <enum>QSizePolicy::Preferred</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>150</width>
- <height>16</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="playPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>play simulation</string>
- </property>
- <property name="whatsThis">
- <string>play simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_play</normaloff>:/player_play</iconset>
- </property>
- <property name="shortcut">
- <string>P</string>
- </property>
- <property name="checkable">
- <bool>false</bool>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- <property name="default">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="playOneStepPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>play one step</string>
- </property>
- <property name="whatsThis">
- <string>play one step</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_end</normaloff>:/player_end</iconset>
- </property>
- <property name="shortcut">
- <string>S</string>
- </property>
- <property name="checkable">
- <bool>false</bool>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="pausePushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>pause simulation</string>
- </property>
- <property name="whatsThis">
- <string>pause simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_pause</normaloff>:/player_pause</iconset>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </item>
- </layout>
- </widget>
- <layoutdefault spacing="6" margin="11"/>
- <tabstops>
- <tabstop>monitoringTabs</tabstop>
- <tabstop>rewindPushButton</tabstop>
- <tabstop>playPushButton</tabstop>
- <tabstop>playOneStepPushButton</tabstop>
- <tabstop>pausePushButton</tabstop>
- </tabstops>
- <resources/>
- <connections/>
-</ui>
diff --git a/modeling/components/mmlcomponent/CMakeLists.txt b/modeling/components/mmlcomponent/CMakeLists.txt
index 02d87f1..469e838 100644
--- a/modeling/components/mmlcomponent/CMakeLists.txt
+++ b/modeling/components/mmlcomponent/CMakeLists.txt
@@ -1,23 +1,14 @@
+# if component MML is on, then mml gui is also needed
if(COMPONENT_MML)
set(MML_GENERATE_GUI ON CACHE BOOL "Forced by COMPONENT_MML" FORCE)
-
- #FIXME Sofa support => fix sofa dependency properly
- if(MML_SOFA_SUPPORT)
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
- endif()
+ add_definitions(-DMML_GENERATE_GUI)
endif()
camitk_extension( COMPONENT_EXTENSION
DEFINES COMPILE_MMLCOMPONENT_API
- NEEDS_LIBXML2
NEEDS_XSD
- NEEDS_CEP_LIBRARIES pml lml mml monitoringgui monitoring
- NEEDS_COMPONENT_EXTENSION vtkmesh physicalmodel
+ NEEDS_CEP_LIBRARIES pml pmlschema lml lmlschema monitoring monitoringgui mmlschema
+ NEEDS_COMPONENT_EXTENSION pmlcomponent vtkmesh
HEADERS_TO_INSTALL MMLComponentExtension.h
MMLComponent.h
MMLDisplay.h
@@ -26,7 +17,6 @@ camitk_extension( COMPONENT_EXTENSION
MMLMonitorDisplays/Colors.h
MMLMonitorDisplays/Arrows.h
MMLMonitorDisplays/Tabular.h
- MMLComponentPopup.h
MMLComponentAPI.h
CEP_NAME CEP_MODELING
DESCRIPTION "Component MML allows one to handle XML file that compare biomechanical simulations with different simulators"
diff --git a/modeling/components/mmlcomponent/MMLComponent.cpp b/modeling/components/mmlcomponent/MMLComponent.cpp
index 55a3906..14cb6f6 100644
--- a/modeling/components/mmlcomponent/MMLComponent.cpp
+++ b/modeling/components/mmlcomponent/MMLComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,22 +23,24 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-// Monitoring includes
-#include<MonitoringManager.h>
-#include<MonitoringDialog.h>
-#include<MonitoringGuiManager.h>
-
-#include <Log.h>
-
-#include <PMManagerDC.h>
-#include <LoadsManager.h>
-
+//-- MML Component
#include "MMLComponent.h"
#include "MMLDisplay.h"
-#include "MMLComponentPopup.h"
+//-- PML Component
+#include <PMLComponent.h>
+
+//-- MML includes
+#include <MonitoringManager.h>
+#include <MonitoringDialog.h>
+#include <MonitoringGuiManager.h>
+
+//-- CamiTK
#include <Application.h>
#include <MainWindow.h>
+#include <Action.h>
+#include <Log.h>
+
using namespace camitk;
//-- Qt
@@ -47,16 +49,17 @@ using namespace camitk;
// -------------------- default constructor --------------------
MMLComponent::MMLComponent(const QString & fileName) throw(AbortException) : Component(fileName, QFileInfo(fileName).baseName()) {
- myPopupMenu = NULL;
QString file = fileName;
- QFileInfo fi = QFileInfo(myFileName);
+ QFileInfo fi = QFileInfo(fileName);
try {
// initialize the MML export file name
exportedMml = "";
+ // create a simple MML from a Sofa scn file
if (fi.completeSuffix() == "scn") {
- file = /*QFileInfo(fi).absolutePath() */ QDir::tempPath() + "/" + QFileInfo(fi).baseName() + ".mml";
+ // create mml file in temp directory
+ file = QDir::tempPath() + "/" + QFileInfo(fi).baseName() + ".mml";
// check if the mml already exist
if (QFileInfo(file).exists()) {
@@ -82,17 +85,31 @@ MMLComponent::MMLComponent(const QString & fileName) throw(AbortException) : Com
}
mmlGUI = new MonitoringGuiManager;
+ mmlGUI->getDialog()->hide();
display = new MMLDisplay(this);
- //mmlDock = new QDockWidget(fi.baseName(), Application::getMainWindow());
- //mmlDock->setAllowedAreas(Qt::RightDockWidgetArea);
- //mmlDock->setWidget(mmlGUI->getDialog());
- //Application::getMainWindow()->addDockWidget(Qt::RightDockWidgetArea, mmlDock);
- mmlGUI->loadMmlInFile(file);
- // in order to give the ownership of the pml pointer to the PMManagerDC, we need to use takePml() not getPml()
- pmMgr = new PMManagerDC( mmlGUI->getMonitoringManager()->takePml(), mmlGUI->getMonitoringManager()->getPmlFileName().c_str());
- // in order to give the ownership of the lml pointer to the LoadsManager of the PMManagerDC, we need to use takeLml() not getLml()
- pmMgr->getLoadsManager()->setLoads(mmlGUI->getMonitoringManager()->takeLml());
- addChild(pmMgr);
+
+ // never selected yet
+ neverSelected = true;
+
+ if (mmlGUI->loadMmlInFile(file)) {
+ // in order to give the ownership of the pml pointer to the PMLComponent, we need to use takePml() not getPml()
+ pmlComponent = new PMLComponent( mmlGUI->getMonitoringManager()->takePml(), mmlGUI->getMonitoringManager()->getPmlFileName().c_str());
+ // in order to give the ownership of the lml pointer to the LoadsManager of the PMManagerDC, we need to use takeLml() not getLml()
+ //TODO FIXME : display the LML, one way or another
+ //pmlComponent->getLoadsManager()->setLoads(mmlGUI->getMonitoringManager()->takeLml());
+ addChild(pmlComponent);
+ } else {
+ if (display) {
+ delete display;
+ display = NULL;
+ }
+
+ if (mmlGUI) {
+ delete mmlGUI;
+ mmlGUI = NULL;
+ }
+ throw AbortException("Cannot open "+ myFileName.toStdString() + "\nThe given simulator is probably not supported");
+ }
} catch (xml_schema::exception & e) {
CAMITK_ERROR("MMLComponent", "constructor", "xml_schema exception, attempt to read from " + myFileName.toStdString() << endl << e);
throw AbortException("Cannot create MMLComponent from " + myFileName.toStdString() + ": xml_schema exception.\nReason: " + e.what());
@@ -101,18 +118,11 @@ MMLComponent::MMLComponent(const QString & fileName) throw(AbortException) : Com
// ---------------------- destructor ----------------------------
MMLComponent::~MMLComponent() {
-
- /*if (exportedMml!="")
- remove(exportedMml.toStdString().c_str());
- */
- if (pmMgr) {
- delete pmMgr;
- pmMgr = NULL;
+ if (pmlComponent) {
+ delete pmlComponent;
+ pmlComponent = NULL;
}
- //mmlGUI->getMonitoringManager()->setPml(NULL);
-
-
if (display) {
delete display;
display = NULL;
@@ -123,15 +133,17 @@ MMLComponent::~MMLComponent() {
mmlGUI = NULL;
}
- if (myPopupMenu) {
- delete myPopupMenu;
- myPopupMenu = NULL;
- }
+}
- if (mmlDock) {
- Application::getMainWindow()->removeDockWidget(mmlDock);
- delete mmlDock;
- mmlDock = NULL;
+//-------------------- setSelected -------------------
+void MMLComponent::setSelected(const bool selected, const bool recursive) {
+ camitk::Component::setSelected(selected, false);
+ // set the default action to be the PML explorer
+ if (neverSelected) {
+ Action *defaultAction = Application::getAction("Simulation Dialog");
+ if (defaultAction)
+ defaultAction->getQAction()->trigger();
+ neverSelected = false;
}
}
@@ -140,9 +152,9 @@ MonitoringGuiManager* MMLComponent::getMonitoringGuiManager() {
return mmlGUI;
}
-// -------------------- getPMManager --------------------
-PMManagerDC* MMLComponent::getPMManager() {
- return pmMgr;
+// -------------------- getPMLComponent --------------------
+PMLComponent* MMLComponent::getPMLComponent() {
+ return pmlComponent;
}
// -------------------- getDisplay --------------------
@@ -153,44 +165,23 @@ MMLDisplay* MMLComponent::getDisplay() {
// -------------------- connectPml --------------------
void MMLComponent::connectPml() {
- removeChild(pmMgr);
- delete pmMgr;
- pmMgr = NULL;
+ removeChild(pmlComponent);
+ delete pmlComponent;
+ pmlComponent = NULL;
deleteChildren();
refreshInterfaceNode();
- // this gives the ownership of pml pointer to the PMManagerDC, use takePml() not getPml()
- pmMgr = new PMManagerDC( mmlGUI->getMonitoringManager()->takePml(), mmlGUI->getMonitoringManager()->getPmlFileName().c_str());
- addChild(pmMgr);
+ // this gives the ownership of pml pointer to the PML Component, use takePml() not getPml()
+ pmlComponent = new PMLComponent( mmlGUI->getMonitoringManager()->takePml(), mmlGUI->getMonitoringManager()->getPmlFileName().c_str());
+ addChild(pmlComponent);
refreshInterfaceNode();
- pmMgr->refresh();
+ pmlComponent->refresh();
display->updateDisplay();
}
-// -------------------- getPopupMenu --------------------
-QMenu * MMLComponent::getPopupMenu(QWidget* parent) {
- if (!myPopupMenu) {
- myPopupMenu = new MMLComponentPopup(this, parent);
- }
-
- return myPopupMenu;
-}
-
-// -------------------- isDockVisible --------------------
-bool MMLComponent::isDockVisible() {
- return mmlDock->isVisible();
-}
-
-// -------------------- setDockVisible --------------------
-QWidget* MMLComponent::setDockVisible(bool visible) {
- //mmlDock->setVisible(visible);
- //return getMonitoringGuiManager()->getDialog();
- return ( new QWidget() );
-}
-
// -------------------- getModified --------------------
bool MMLComponent::getModified() const {
return (camitk::Component::getModified()
- || pmMgr->getModified());
+ || pmlComponent->getModified());
}
// -------------------- saveMML --------------------
diff --git a/modeling/components/mmlcomponent/MMLComponent.h b/modeling/components/mmlcomponent/MMLComponent.h
index 760a53b..cd13bad 100644
--- a/modeling/components/mmlcomponent/MMLComponent.h
+++ b/modeling/components/mmlcomponent/MMLComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,9 +35,8 @@
class QDockWidget;
class MMLDisplay;
-class MMLComponentPopup;
class MonitoringGuiManager;
-class PMManagerDC;
+class PMLComponent;
/**
* @ingroup group_cepmodeling_components_mml
*
@@ -57,7 +56,7 @@ public:
/// destructor
virtual ~MMLComponent();
- ///@name Redefined from Extension
+ ///@name Redefined from Component
///@{
/** save the current mml in the current file name.
@@ -65,25 +64,31 @@ public:
*/
bool save();
+ /// init the representation (nothing to do, every 3D representation is managed by the PMLComponent)
void initRepresentation() {};
+ /** Update the selection flag (this method is overridden in order to show the default
+ * modeling action when the component is selected for the first time).
+ *
+ * @param b the value of the flag (true means "is selected")
+ * @param recursive if true (default), also updates the children Component selection flags.
+ */
+ virtual void setSelected(const bool b, const bool recursive = true);
+
+ ///@}
+
/// get MonitoringGuiManager
MonitoringGuiManager* getMonitoringGuiManager();
+
/// get Physical model manager
- PMManagerDC* getPMManager();
+ PMLComponent* getPMLComponent();
+
/// get the display
MMLDisplay* getDisplay();
+
/// connect pml
void connectPml();
- /// Overriden method so that we actually can build a popup menu with different actions
- virtual QMenu * getPopupMenu(QWidget* parent);
-
- /// return true if mmlDock is visible
- bool isDockVisible();
- /// show or hide mmlDock
- QWidget * setDockVisible(bool visible);
-
/// save the mml in the current filename (and the pml if needed)
void saveMML();
@@ -95,11 +100,8 @@ private:
/// the mml GUI class is used directly
MonitoringGuiManager *mmlGUI;
- /// to put the mmlGUI
- QDockWidget *mmlDock;
-
/// physical model manager
- PMManagerDC* pmMgr;
+ PMLComponent* pmlComponent;
/// display manager
MMLDisplay* display;
@@ -107,8 +109,9 @@ private:
/// when a .scn is loaded, name of the automatically exported mml file (empty string otherwise)
QString exportedMml;
- /// the popup menu
- MMLComponentPopup * myPopupMenu;
+ /// the first selection should trigger the pml exporer action (default action)
+ bool neverSelected;
+
};
diff --git a/modeling/components/mmlcomponent/MMLComponentAPI.h b/modeling/components/mmlcomponent/MMLComponentAPI.h
index 0b694e2..7e18138 100644
--- a/modeling/components/mmlcomponent/MMLComponentAPI.h
+++ b/modeling/components/mmlcomponent/MMLComponentAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLComponentExtension.cpp b/modeling/components/mmlcomponent/MMLComponentExtension.cpp
index 48bd067..54bb8a4 100644
--- a/modeling/components/mmlcomponent/MMLComponentExtension.cpp
+++ b/modeling/components/mmlcomponent/MMLComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,9 +28,6 @@
using namespace camitk;
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2( mml, MMLComponentExtension );
-
// --------------- getName -------------------
QString MMLComponentExtension::getName() const {
return "MML Component";
diff --git a/modeling/components/mmlcomponent/MMLComponentExtension.h b/modeling/components/mmlcomponent/MMLComponentExtension.h
index 684b182..3447afd 100644
--- a/modeling/components/mmlcomponent/MMLComponentExtension.h
+++ b/modeling/components/mmlcomponent/MMLComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -41,11 +41,12 @@
**/
class MMLCOMPONENT_API MMLComponentExtension : public camitk::ComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.modeling.component.mmlcomponent")
public:
/// the constructor (do nothing really)
- MMLComponentExtension() : ComponentExtension() {};
+ MMLComponentExtension() : ComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/modeling/components/mmlcomponent/MMLComponentPopup.cpp b/modeling/components/mmlcomponent/MMLComponentPopup.cpp
deleted file mode 100644
index 477d6ff..0000000
--- a/modeling/components/mmlcomponent/MMLComponentPopup.cpp
+++ /dev/null
@@ -1,50 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "MMLComponentPopup.h"
-
-#include "MMLComponent.h"
-
-#include "Component.h"
-
-#include <Application.h>
-
-// ---------------------- constructor ----------------------------
-MMLComponentPopup::MMLComponentPopup(camitk::Component* comp, QWidget* parent):camitk::ComponentPopupMenu(comp, parent) {
- showTabs=addAction("show monitoring tabs", SLOT(monitoringTabs()), true);
- showTabs->setCheckable(true);
- showTabs->setChecked(dynamic_cast<MMLComponent*>(myComponent)->isDockVisible());
-}
-
-// ---------------------- destructor ----------------------------
-MMLComponentPopup::~MMLComponentPopup() {}
-
-
-// ---------------------- monitoringTabs ----------------------------
-void MMLComponentPopup::monitoringTabs() {
- dynamic_cast<MMLComponent*>(myComponent)->setDockVisible(!dynamic_cast<MMLComponent*>(myComponent)->isDockVisible());
- showTabs->setChecked(dynamic_cast<MMLComponent*>(myComponent)->isDockVisible());
-}
-
diff --git a/modeling/components/mmlcomponent/MMLComponentPopup.h b/modeling/components/mmlcomponent/MMLComponentPopup.h
deleted file mode 100644
index 8ab5bea..0000000
--- a/modeling/components/mmlcomponent/MMLComponentPopup.h
+++ /dev/null
@@ -1,60 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef MMLCOMPONENTPOPUP_H
-#define MMLCOMPONENTPOPUP_H
-
-#include <ComponentPopupMenu.h>
-#include "MMLComponentAPI.h"
-/**
- * @ingroup group_cepmodeling_components_mml
- *
- * @brief
- * A popup monu for MML component
- * Acessible when rigth cliking on the component
- *
- *
- **/
-class MMLCOMPONENT_API MMLComponentPopup : public camitk::ComponentPopupMenu {
-
- Q_OBJECT
-
-public:
- /// the popup constructor
- MMLComponentPopup(camitk::Component * comp, QWidget* parent);
- /// destructor
- ~MMLComponentPopup();
-
-public slots:
- /// show monitoring widget
- void monitoringTabs();
-
-private:
- /// menus id
- QAction* showTabs;
-
-};
-
-#endif
\ No newline at end of file
diff --git a/modeling/components/mmlcomponent/MMLDisplay.cpp b/modeling/components/mmlcomponent/MMLDisplay.cpp
index a47e6a1..ce49fcf 100644
--- a/modeling/components/mmlcomponent/MMLDisplay.cpp
+++ b/modeling/components/mmlcomponent/MMLDisplay.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,11 +25,6 @@
#include <pml/PhysicalModel.h>
#include <pml/Atom.h>
-#include <AtomDC.h>
-#include <StructuralComponentDC.h>
-#include <PMManagerDC.h>
-#include <LoadsManager.h>
-#include <LoadsSimulation.h>
#include <monitoringgui/MonitoringGuiManager.h>
#include <monitoringgui/MonitoringDialog.h>
@@ -40,9 +35,12 @@
#include "MMLComponent.h"
#include "MMLMonitorDisplay.h"
+#include <PMLComponent.h>
#include <InteractiveViewer.h>
#include <QtGui>
+#include <QTableWidget>
+#include <QRadioButton>
#include "MMLMonitorDisplayFactory.h"
#include <MonitoringDriver.h>
@@ -77,35 +75,20 @@ MMLDisplay::~MMLDisplay() {
// ---------------------- updateDisplay ----------------------------
void MMLDisplay::updateDisplay() {
-
- double pos[3];
- AtomDC* adc;
- Atom* a;
- PMManagerDC* pmMgr = mmlManager->getPMManager();
- PhysicalModel* pm = mmlManager->getMonitoringGuiManager()->getMonitoringManager()->getPml();
- StructuralComponent * theAtoms = pm->getAtoms();
-
- for( unsigned int i = 0; i < theAtoms->getNumberOfStructures(); i++ ) {
- // get the target index
- a = ( Atom * ) theAtoms->getStructure( i );
- // activate the target's 3D representation
- adc = pmMgr->getDC( a );
- if( adc != NULL ) {
- a->getPosition( pos );
- adc->resetAlreadyMovedFlag();
- adc->setPosition( pos[0], pos[1], pos[2] );
- }
- }
-
- //Update monitor display
+ // Update monitor display
if( monitorDisplay )
monitorDisplay->update();
+ // TODO / FIXME update this code for pmlcomponent (no more AtomDC)
+ // There might be nothing to do but delete this commented code!
+ /*
// update loads and atom data if any (override monitors)
pmMgr->getLoadsManager()->getLoadsSimulation()->updateAtomData();
pmMgr->getLoadsManager()->updateLoadsDisplay();
+ */
- camitk::InteractiveViewer::get3DViewer()->refreshRenderer();
+ // updating atom's position in 3D is automatic (pml and vtk memory are shared), just update the display
+ mmlManager->getPMLComponent()->refreshDisplay();
}
@@ -161,7 +144,7 @@ void MMLDisplay::updateMonitorsTable() {
}
}
-//--------------- refreshModified ---------------------------------
+// -------------------- refreshModified ---------------------
Monitor* MMLDisplay::getDisplayedMonitor() {
QTableWidget* table = mmlManager->getMonitoringGuiManager()->getDialog()->getMonitorsTableWidget();
@@ -173,6 +156,7 @@ Monitor* MMLDisplay::getDisplayedMonitor() {
return NULL;
}
+// -------------------- getDisplayedMonitorLine ---------------------
int MMLDisplay::getDisplayedMonitorLine() {
QTableWidget* table = mmlManager->getMonitoringGuiManager()->getDialog()->getMonitorsTableWidget();
@@ -184,7 +168,7 @@ int MMLDisplay::getDisplayedMonitorLine() {
return -1;
}
-
+// -------------------- connectPml ---------------------
void MMLDisplay::connectPml() {
mmlManager->connectPml();
}
diff --git a/modeling/components/mmlcomponent/MMLDisplay.h b/modeling/components/mmlcomponent/MMLDisplay.h
index a43844b..06df603 100644
--- a/modeling/components/mmlcomponent/MMLDisplay.h
+++ b/modeling/components/mmlcomponent/MMLDisplay.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplay.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplay.cpp
index bc0d5a1..a28c63d 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplay.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplay.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplay.h b/modeling/components/mmlcomponent/MMLMonitorDisplay.h
index e1e4889..897a267 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplay.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplay.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,7 @@ class MMLComponent;
* @ingroup group_cepmodeling_components_mml
*
* @brief
- * TODO Describe the class here
+ * Generic class for MML Monitor 3D/Graphical representation
*
*
**/
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.cpp
index cb53496..0f5f4ab 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.h b/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.h
index e3b5487..8e0e784 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplayFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.cpp
index c298a17..f74f702 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,15 +24,14 @@
****************************************************************************/
#include "Arrows.h"
-#include <PMManagerDC.h>
-#include <AtomDC.h>
-#include <AtomDecoration.h>
-#include <InteractiveViewer.h>
+#include <PMLComponent.h>
#include "MMLMonitorDisplayFactory.h"
#include "MMLComponent.h"
+#include <vtkDoubleArray.h>
+
using namespace camitk;
bool arrowsRegistered=MMLMonitorDisplayFactory::getInstance()->registerClass<Arrows>("Arrows",Monitor::VECTORSET);
@@ -47,47 +46,38 @@ Arrows::~Arrows() {
// ---------------------- update ----------------------------
void Arrows::update() {
- PMManagerDC* pmMgr=manager->getPMManager();
- AtomDecoration* deco;
- AtomDC* adc;
-
- if (monitor->getNumberOfValues()>0) {
- for ( unsigned int i = 0; i <monitor->getNumberOfIndex(); i++ ) {
+ // create the corresponding point data
+ PMLComponent * pmlComp = manager->getPMLComponent();
- adc = pmMgr->getDC (pmMgr->getPhysicalModel()->getAtom(monitor->getIndexOfValues(i)));
- deco = adc->getDecoration("Force", GeometricObject::ARROW);
- deco->setColor(1.0, 0.3, 0.15);
- deco->update(monitor->getValue(3*i),monitor->getValue(3*i+1),monitor->getValue(3*i+2));
- deco->show(true);
+ // Setup MeshComponent DataArray
+ vtkSmartPointer<vtkDoubleArray> monitorDataArray = vtkDoubleArray::New();
+ monitorDataArray->SetNumberOfComponents(3);
+ monitorDataArray->Allocate(3*pmlComp->getPhysicalModel()->getNumberOfAtoms());
+ monitorDataArray->SetName(monitor->getTypeName().c_str());
+ monitorDataArray->SetNumberOfTuples(pmlComp->getPhysicalModel()->getNumberOfAtoms());
- }
+ // init to zero
+ double value[3] = { 0.0, 0.0, 0.0};
+ for (vtkIdType i = 0; i < pmlComp->getPhysicalModel()->getNumberOfAtoms(); i++) {
+ monitorDataArray->SetTuple(i,value);
+ }
- // refresh the view
- InteractiveViewer::get3DViewer()->refresh();
+ // update the known data
+ for (unsigned int i = 0; i < monitor->getNumberOfIndex(); i++) {
+ Atom * a = pmlComp->getPhysicalModel()->getAtom(monitor->getIndexOfValues(i));
+ for(unsigned int j = 0; j<3; j++)
+ value[j] = monitor->getValue(3*i +j);
+ monitorDataArray->SetTuple(pmlComp->getPointId(a),value);
}
+
+ pmlComp->addDataArray(camitk::MeshDataModel::POINTS, QString(monitor->getTypeName().c_str()), monitorDataArray);
}
// ---------------------- hide ----------------------------
void Arrows::hide() {
- PMManagerDC* pmMgr=manager->getPMManager();
- AtomDecoration* deco;
- AtomDC* adc;
-
- if (monitor->getNumberOfValues()>0) {
-
- for ( unsigned int i = 0; i <monitor->getNumberOfIndex(); i++ ) {
-
- adc = pmMgr->getDC (pmMgr->getPhysicalModel()->getAtom(monitor->getIndexOfValues(i)));
- deco = adc->getDecoration("Force", GeometricObject::ARROW);
- deco->show(false);
-
- }
-
- // refresh the view
- InteractiveViewer::get3DViewer()->refresh();
- }
-
+ // remove the current colors
+ manager->getPMLComponent()->setActiveData(camitk::MeshDataModel::POINTS, NULL);
}
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.h b/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.h
index 96dc0e9..5705733 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Arrows.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.cpp
index a799129..3a32a8f 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,94 +25,52 @@
#include "Colors.h"
-#include <InteractiveViewer.h>
-#include <AtomDC.h>
-#include <PMManagerDC.h>
+#include <PMLComponent.h>
+
+#include <vtkDoubleArray.h>
+#include <vtkPointData.h>
#include "MMLMonitorDisplayFactory.h"
#include "MMLComponent.h"
-bool colorsRegistered=MMLMonitorDisplayFactory::getInstance()->registerClass<Colors>("Colors",Monitor::SCALARSET);
+bool colorsRegistered = MMLMonitorDisplayFactory::getInstance()->registerClass<Colors>("Colors", Monitor::SCALARSET);
-Colors::Colors(Monitor* monitor,MMLComponent* manager): MMLMonitorDisplay(monitor,manager) {
+Colors::Colors(Monitor * monitor, MMLComponent * manager): MMLMonitorDisplay(monitor, manager) {
}
Colors::~Colors() {
-
}
// ---------------------- update ----------------------------
void Colors::update() {
- if (monitor->getNumberOfValues()>0) {
- PMManagerDC* pmMgr=manager->getPMManager();
- pmMgr->createPointData();
- // destroy existing atom data (in case not all atom is given a point data)
- pmMgr->destroyPointData();
-
- // calculate min and max of monitor data
- double min=monitor->getValue(0);
- double max=min;
-
- for (unsigned int i=1; i<monitor->getNumberOfIndex(); i++) {
- double d=monitor->getValue(i);
-
- if (d<min)
- min=d;
-
- if(d>max)
- max=d;
- }
-
- // -- update value
- double val;
- double range = max - min;
-
- AtomDC* adc;
-
- // in case some nodes are not displayed set all values to 0 (blue color for everyone)
- StructuralComponent* sc=pmMgr->getPhysicalModel()->getAtoms();
-
- for ( unsigned int i = 0; i<sc->getNumberOfStructures() ; i++ ) {
- adc = pmMgr->getDC ((Atom*)(sc->getStructure(i)));
- adc -> updatePointData (0.0);
- }
-
- // update values for each atom
- for ( unsigned int i = 0; i <monitor->getNumberOfIndex(); i++ ) {
- val =monitor->getValue(i);
-
- // scaling [0..1]
- if ( fabs ( range ) < 1e-10 || val <= min ) {
- val = 0.0;
- } else {
- if ( val >= max ) {
- val = 1.0;
- } else {
- // renormalized the size between min and max
- val = ( ( val - min ) / range );
- }
- }
-
- adc = pmMgr->getDC (pmMgr->getPhysicalModel()->getAtom(monitor->getIndexOfValues(i)));
- adc -> updatePointData (val);
- // add or update custom properties of atom //TODO move into MMLdisplay and make a for loop on all monitors
- //pmMgr->getPhysicalModel()->getAtom(monitor->getIndex(i))->getProperties()->set(monitor->getTypeName(),monitor->getValue(i));
- //adc->refresh();
- }
-
- //-- show the color scale in 3D
- camitk::InteractiveViewer::get3DViewer()->setColorScaleTitle(monitor->getTypeName().c_str());
- camitk::InteractiveViewer::get3DViewer()->setColorScaleMinMax(min, max);
+ // create the corresponding point data
+ PMLComponent * pmlComp = manager->getPMLComponent();
+
+ // Use MeshComponent DataArray
+ vtkSmartPointer<vtkDoubleArray> monitorDataArray = vtkDoubleArray::New();
+ monitorDataArray->SetNumberOfValues(pmlComp->getPhysicalModel()->getNumberOfAtoms());
+
+ // init to zero
+ for (vtkIdType i = 0; i < pmlComp->getPhysicalModel()->getNumberOfAtoms(); i++) {
+ monitorDataArray->SetValue(i,0.0);
}
+
+ // update the known data
+ for (unsigned int i = 0; i < monitor->getNumberOfIndex(); i++) {
+ Atom * a = pmlComp->getPhysicalModel()->getAtom(monitor->getIndexOfValues(i));
+ monitorDataArray->SetValue(pmlComp->getPointId(a),monitor->getValue(i));
+ }
+
+ pmlComp->addDataArray(camitk::MeshDataModel::POINTS, QString(monitor->getTypeName().c_str()), monitorDataArray);
}
// ---------------------- hide ----------------------------
void Colors::hide() {
- manager->getPMManager()->destroyPointData();
- camitk::InteractiveViewer::get3DViewer()->setColorScale(false);
+ // remove the current colors
+ manager->getPMLComponent()->setActiveData(camitk::MeshDataModel::POINTS, NULL);
}
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.h b/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.h
index 4d47044..857be20 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Colors.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.cpp
index dbf1181..5c7c199 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,6 +32,8 @@
#include <monitoringgui/MonitoringGuiManager.h>
#include <monitoringgui/MonitoringDialog.h>
+#include <QHeaderView>
+
bool statisticsRegistered=MMLMonitorDisplayFactory::getInstance()->registerClass<Statistics>("Statistics",Monitor::SCALARSET);
Statistics::Statistics(Monitor* monitor, MMLComponent* manager): MMLMonitorDisplay(monitor, manager) {
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.h b/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.h
index baafc86..e3c7655 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Statistics.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,6 +24,7 @@
****************************************************************************/
#include <QtGui>
+#include <QTableWidget>
#include "MMLMonitorDisplay.h"
#include "MMLComponentAPI.h"
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.cpp b/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.cpp
index 59e0206..e74ba46 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.cpp
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,6 +32,9 @@
#include <monitoringgui/MonitoringGuiManager.h>
#include <monitoringgui/MonitoringDialog.h>
+#include <QHeaderView>
+#include <QApplication>
+
bool tabularRegistered=MMLMonitorDisplayFactory::getInstance()->registerClass<Tabular>("Tabular");
Tabular::Tabular(Monitor* monitor, MMLComponent* manager): MMLMonitorDisplay(monitor, manager) {
diff --git a/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.h b/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.h
index b44c02e..10045c7 100644
--- a/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.h
+++ b/modeling/components/mmlcomponent/MMLMonitorDisplays/Tabular.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,6 +24,7 @@
****************************************************************************/
#include <QtGui>
+#include <QTableWidget>
#include "MMLMonitorDisplay.h"
#include "MMLComponentAPI.h"
diff --git a/modeling/components/mmlcomponent/testdata/TruthCube-0-HexaFEM.pml b/modeling/components/mmlcomponent/testdata/TruthCube-0-HexaFEM.pml
new file mode 100644
index 0000000..5b4d612
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/TruthCube-0-HexaFEM.pml
@@ -0,0 +1,21598 @@
+<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
+<physicalModel name="Truth Cube 0%" nrOfAtoms="729"
+ nrOfExclusiveComponents="4"
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diff --git a/modeling/components/mmlcomponent/testdata/TruthCube-18-reference.mmlin b/modeling/components/mmlcomponent/testdata/TruthCube-18-reference.mmlin
new file mode 100644
index 0000000..c31e238
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/TruthCube-18-reference.mmlin
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no" ?>
+<!-- reference file for the truthcube: measured position for 18.25% compression -->
+<monitoringOut>
+
+ <pmlFile>TruthCube-0-HexaFEM.pml</pmlFile>
+
+ <time unit="s" value="1000000">
+ <monitor index="1" target="" type="Position">
+ <startAt unit="s" value="0"/>
+ <stopAt unit="s" value="1000000"/>
+ <indexes>577 496 415 334 253 172 91 586 505 424 343 262 181 100 595 514 433 352 271 190 109 604 523 442 361 280 199 118 613 532 451 370 289 208 127 622 541 460 379 298 217 136 631 550 469 388 307 226 145 578 497 416 335 254 173 92 587 506 425 344 263 182 101 596 515 434 353 272 191 110 605 524 443 362 281 200 119 614 533 452 371 290 209 128 623 542 461 380 299 218 137 632 551 470 389 308 227 146 579 498 417 336 255 174 93 588 507 426 345 264 183 102 597 516 435 354 273 192 111 606 [...]
+ <data>-31.85 -31.08 14.38 -32.29 -30.62 7.05 -32.62 -30.62 -0.6 -32.84 -30.62 -8.72 -32.89 -30.16 -16.55 -32.47 -29.83 -24.68 -31.7 -29.37 -32.44 -32.56 -19.94 14.04 -32.8 -19.37 6.71 -33.15 -19.83 -0.96 -33.4 -19.37 -8.91 -33.4 -19.37 -16.52 -32.53 -18.61 -24.6 -31.73 -18.12 -32.47 -33.35 -8.75 13.79 -33.17 -7.68 6.53 -33.58 -8.13 -1.3 -34.48 -8.13 -9.05 -33.22 -7.5 -16.7 -32.69 -6.88 -24.72 -31.73 -6.88 -32.47 -32.61 1.31 13.73 -33.39 3.13 6.4 -33.97 3.55 -1.3 -33.54 4.38 -9.24 - [...]
+ </monitor>
+ </time>
+
+</monitoringOut>
diff --git a/modeling/components/mmlcomponent/testdata/TruthCube-Ansys.mml b/modeling/components/mmlcomponent/testdata/TruthCube-Ansys.mml
new file mode 100644
index 0000000..f76ea5e
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/TruthCube-Ansys.mml
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<monitoringIn xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+
+ <dt value="0.1" unit="s"/>
+ <refresh value="1" unit="s"/>
+ <pmlFile>TruthCube-0-HexaFEM.pml</pmlFile>
+ <lmlFile>compression-18.lml</lmlFile>
+ <simulator>ansys</simulator>
+ <monitors>
+ <monitor type="Position" index="1" target="Elements">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="REN" index="2" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ <monitor type="GeomDeviation" index="3" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ </monitors>
+</monitoringIn>
diff --git a/modeling/components/mmlcomponent/testdata/TruthCube-ArtiSynth.mml b/modeling/components/mmlcomponent/testdata/TruthCube-ArtiSynth.mml
new file mode 100644
index 0000000..1ae789e
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/TruthCube-ArtiSynth.mml
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<monitoringIn xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+
+ <dt value="0.1" unit="s"/>
+ <refresh value="1" unit="s"/>
+ <pmlFile>TruthCube-0-HexaFEM.pml</pmlFile>
+ <lmlFile>compression-18.lml</lmlFile>
+ <simulator>artisynth</simulator>
+ <monitors>
+ <monitor type="Position" index="1" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="REN" index="2" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ <monitor type="GeomDeviation" index="3" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ </monitors>
+</monitoringIn>
diff --git a/modeling/components/mmlcomponent/testdata/TruthCube-Sofa.mml b/modeling/components/mmlcomponent/testdata/TruthCube-Sofa.mml
new file mode 100644
index 0000000..7d25f1e
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/TruthCube-Sofa.mml
@@ -0,0 +1,53 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<monitoringIn xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+
+ <dt value="0.1" unit="s"/>
+ <refresh value="1" unit="s"/>
+ <pmlFile>TruthCube-0-HexaFEM.pml</pmlFile>
+ <lmlFile>compression-18.lml</lmlFile>
+ <simulator>sofa</simulator>
+ <stoppingCriteria>
+ <multipleCriteria op="And">
+ <criteria unit="mm" xsi:type="Position">
+ <method xsi:type="Threshold" maxValue="1e-3" scope="Any"/>
+ </criteria>
+ <!-- needed for some simulation where displacements are very small during the first simulation steps -->
+ <criteria unit="s" xsi:type="Time">
+ <method xsi:type="MinThreshold" minValue="0.5" scope="Any"/>
+ </criteria>
+ </multipleCriteria>
+ </stoppingCriteria>
+ <monitors>
+ <monitor type="Position" index="1" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="REN" index="2" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ <monitor type="GeomDeviation" index="3" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ <reference document="TruthCube-18-reference.mmlin"/>
+ </monitor>
+ <monitor type="Volume" index="4" target="Elements">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="Position" index="5" target="1-5,24">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="Displacement" index="6" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ <monitor type="NormDisplacement" index="7" target="beads">
+ <startAt value="0" unit="s"/>
+ <stopAt value="100" unit="s"/>
+ </monitor>
+ </monitors>
+</monitoringIn>
diff --git a/modeling/components/mmlcomponent/testdata/compression-18.lml b/modeling/components/mmlcomponent/testdata/compression-18.lml
new file mode 100644
index 0000000..e697ec4
--- /dev/null
+++ b/modeling/components/mmlcomponent/testdata/compression-18.lml
@@ -0,0 +1,25 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model load file for a truth cube compression of 18.25% -->
+<loads xmlns='http://www-timc.imag.fr/load'
+ xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'>
+
+
+ <!-- All z- are fixed -->
+ <load xsi:type="Translation">
+ <appliedTo>648-728</appliedTo>
+ <valueEvent date="0" value="1"/>
+ <direction x="NULL" y="NULL" z="NULL"/>
+ <unit>mm</unit>
+ </load>
+
+
+ <!-- all z+ are translated -->
+ <load xsi:type="Translation">
+ <appliedTo>0-80</appliedTo>
+ <valueEvent date="0" value="0"/>
+ <valueEvent date="10" value="14.6"/>
+ <direction x="0" y="0" z="1"/>
+ <unit>mm</unit>
+ </load>
+
+</loads>
diff --git a/modeling/components/physicalmodel/AtomDC.cpp b/modeling/components/physicalmodel/AtomDC.cpp
index 1f4d67f..e5a0978 100644
--- a/modeling/components/physicalmodel/AtomDC.cpp
+++ b/modeling/components/physicalmodel/AtomDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -54,9 +54,6 @@ using namespace camitk;
#include "AtomDCPopup.h"
#include "StructuralComponentDC.h"
#include "AtomDecoration.h"
-#include <LoadsManager.h>
-#include <LoadsSimulation.h>
-
// -------------------- constructor --------------------
AtomDC::AtomDC ( camitk::Component *parent, PMManagerDC * pmManagerDC, Atom *a ) : camitk::Component ( parent, "default atom", camitk::Component::GEOMETRY) {
diff --git a/modeling/components/physicalmodel/AtomDC.h b/modeling/components/physicalmodel/AtomDC.h
index b015448..1d873b6 100644
--- a/modeling/components/physicalmodel/AtomDC.h
+++ b/modeling/components/physicalmodel/AtomDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#define AtomDC_H
#include <set>
-#include <camitkcore/Component.h> // Nico: Because someone has the wonderfull idea to name another class Component.h (in PML), here it refers to camitk one, not pml
+#include <camitkcore/Component.h> // Do not remove the camitkcore/ prefix (two classes are named Component, one in pml/pmlschema and the other one is the CamiTK Component)
#include <GeometricObject.h>
#include <vtkFollower.h>
diff --git a/modeling/components/physicalmodel/AtomDCPopup.cpp b/modeling/components/physicalmodel/AtomDCPopup.cpp
index 036ef39..6beb45f 100644
--- a/modeling/components/physicalmodel/AtomDCPopup.cpp
+++ b/modeling/components/physicalmodel/AtomDCPopup.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/AtomDCPopup.h b/modeling/components/physicalmodel/AtomDCPopup.h
index 6c332fb..eaaba5c 100644
--- a/modeling/components/physicalmodel/AtomDCPopup.h
+++ b/modeling/components/physicalmodel/AtomDCPopup.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/AtomDCProperties.cpp b/modeling/components/physicalmodel/AtomDCProperties.cpp
index 23ec113..d538138 100644
--- a/modeling/components/physicalmodel/AtomDCProperties.cpp
+++ b/modeling/components/physicalmodel/AtomDCProperties.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/AtomDCProperties.h b/modeling/components/physicalmodel/AtomDCProperties.h
index 4464a84..04303d7 100644
--- a/modeling/components/physicalmodel/AtomDCProperties.h
+++ b/modeling/components/physicalmodel/AtomDCProperties.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/AtomDCWidget.cpp b/modeling/components/physicalmodel/AtomDCWidget.cpp
index dd63b7f..ad0ff43 100644
--- a/modeling/components/physicalmodel/AtomDCWidget.cpp
+++ b/modeling/components/physicalmodel/AtomDCWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/AtomDCWidget.h b/modeling/components/physicalmodel/AtomDCWidget.h
index d30a13d..3f00125 100644
--- a/modeling/components/physicalmodel/AtomDCWidget.h
+++ b/modeling/components/physicalmodel/AtomDCWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/CMakeLists.txt b/modeling/components/physicalmodel/CMakeLists.txt
index cb52dcb..0fe0b65 100644
--- a/modeling/components/physicalmodel/CMakeLists.txt
+++ b/modeling/components/physicalmodel/CMakeLists.txt
@@ -1,7 +1,7 @@
# build component extension
camitk_extension( COMPONENT_EXTENSION
- NEEDS_LIBXML2
- NEEDS_CEP_LIBRARIES pml lml
+ NEEDS_XSD
+ NEEDS_CEP_LIBRARIES pml pmlschema lml lmlschema
INCLUDE_DIRECTORIES loads ${CMAKE_CURRENT_BINARY_DIR}/loads ${CAMITK_INCLUDE_DIR}/libraries
DEFINES COMPILE_PHYSICALMODEL_COMPONENT_API
HEADERS_TO_INSTALL PMComponentAPI.h
diff --git a/modeling/components/physicalmodel/CellDC.cpp b/modeling/components/physicalmodel/CellDC.cpp
index e54907d..31951d3 100644
--- a/modeling/components/physicalmodel/CellDC.cpp
+++ b/modeling/components/physicalmodel/CellDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/CellDC.h b/modeling/components/physicalmodel/CellDC.h
index 2bbd101..5acc92e 100644
--- a/modeling/components/physicalmodel/CellDC.h
+++ b/modeling/components/physicalmodel/CellDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/CellDCProperties.cpp b/modeling/components/physicalmodel/CellDCProperties.cpp
index e441933..bf16fdd 100644
--- a/modeling/components/physicalmodel/CellDCProperties.cpp
+++ b/modeling/components/physicalmodel/CellDCProperties.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/CellDCProperties.h b/modeling/components/physicalmodel/CellDCProperties.h
index 2545f4a..d3b99f7 100644
--- a/modeling/components/physicalmodel/CellDCProperties.h
+++ b/modeling/components/physicalmodel/CellDCProperties.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/ComponentDC.cpp b/modeling/components/physicalmodel/ComponentDC.cpp
index f4e9f76..8f28412 100644
--- a/modeling/components/physicalmodel/ComponentDC.cpp
+++ b/modeling/components/physicalmodel/ComponentDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/ComponentDC.h b/modeling/components/physicalmodel/ComponentDC.h
index 75c0216..356e38f 100644
--- a/modeling/components/physicalmodel/ComponentDC.h
+++ b/modeling/components/physicalmodel/ComponentDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/MultiComponentDC.cpp b/modeling/components/physicalmodel/MultiComponentDC.cpp
index 713db21..40675f2 100644
--- a/modeling/components/physicalmodel/MultiComponentDC.cpp
+++ b/modeling/components/physicalmodel/MultiComponentDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/MultiComponentDC.h b/modeling/components/physicalmodel/MultiComponentDC.h
index 3dc3fa9..c8fded5 100644
--- a/modeling/components/physicalmodel/MultiComponentDC.h
+++ b/modeling/components/physicalmodel/MultiComponentDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/MultiComponentDCPopup.cpp b/modeling/components/physicalmodel/MultiComponentDCPopup.cpp
index 854c411..f4f6c71 100644
--- a/modeling/components/physicalmodel/MultiComponentDCPopup.cpp
+++ b/modeling/components/physicalmodel/MultiComponentDCPopup.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/MultiComponentDCPopup.h b/modeling/components/physicalmodel/MultiComponentDCPopup.h
index dbb1f22..a84f9a5 100644
--- a/modeling/components/physicalmodel/MultiComponentDCPopup.h
+++ b/modeling/components/physicalmodel/MultiComponentDCPopup.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMComponentAPI.h b/modeling/components/physicalmodel/PMComponentAPI.h
index d1c5414..a394978 100644
--- a/modeling/components/physicalmodel/PMComponentAPI.h
+++ b/modeling/components/physicalmodel/PMComponentAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMComponentExtension.cpp b/modeling/components/physicalmodel/PMComponentExtension.cpp
index 6e0b65a..5f2edde 100644
--- a/modeling/components/physicalmodel/PMComponentExtension.cpp
+++ b/modeling/components/physicalmodel/PMComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMComponentExtension.h b/modeling/components/physicalmodel/PMComponentExtension.h
index 563d255..d5b58e4 100644
--- a/modeling/components/physicalmodel/PMComponentExtension.h
+++ b/modeling/components/physicalmodel/PMComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMManagerDC.cpp b/modeling/components/physicalmodel/PMManagerDC.cpp
index 1f3710b..2ad9c55 100644
--- a/modeling/components/physicalmodel/PMManagerDC.cpp
+++ b/modeling/components/physicalmodel/PMManagerDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMManagerDC.h b/modeling/components/physicalmodel/PMManagerDC.h
index 6ae1fc7..c8578cd 100644
--- a/modeling/components/physicalmodel/PMManagerDC.h
+++ b/modeling/components/physicalmodel/PMManagerDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMManagerDCPopup.cpp b/modeling/components/physicalmodel/PMManagerDCPopup.cpp
index 930618f..103dd80 100644
--- a/modeling/components/physicalmodel/PMManagerDCPopup.cpp
+++ b/modeling/components/physicalmodel/PMManagerDCPopup.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/PMManagerDCPopup.h b/modeling/components/physicalmodel/PMManagerDCPopup.h
index b706a4c..7426ba9 100644
--- a/modeling/components/physicalmodel/PMManagerDCPopup.h
+++ b/modeling/components/physicalmodel/PMManagerDCPopup.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDC.cpp b/modeling/components/physicalmodel/StructuralComponentDC.cpp
index a8bf71c..50eb48f 100644
--- a/modeling/components/physicalmodel/StructuralComponentDC.cpp
+++ b/modeling/components/physicalmodel/StructuralComponentDC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDC.h b/modeling/components/physicalmodel/StructuralComponentDC.h
index d581b1f..f1d1a45 100644
--- a/modeling/components/physicalmodel/StructuralComponentDC.h
+++ b/modeling/components/physicalmodel/StructuralComponentDC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDCPopup.cpp b/modeling/components/physicalmodel/StructuralComponentDCPopup.cpp
index f7e1b67..b6a8dff 100644
--- a/modeling/components/physicalmodel/StructuralComponentDCPopup.cpp
+++ b/modeling/components/physicalmodel/StructuralComponentDCPopup.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDCPopup.h b/modeling/components/physicalmodel/StructuralComponentDCPopup.h
index 9974812..f496a74 100644
--- a/modeling/components/physicalmodel/StructuralComponentDCPopup.h
+++ b/modeling/components/physicalmodel/StructuralComponentDCPopup.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDCProperties.cpp b/modeling/components/physicalmodel/StructuralComponentDCProperties.cpp
index bf19daf..a2d955f 100644
--- a/modeling/components/physicalmodel/StructuralComponentDCProperties.cpp
+++ b/modeling/components/physicalmodel/StructuralComponentDCProperties.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/StructuralComponentDCProperties.h b/modeling/components/physicalmodel/StructuralComponentDCProperties.h
index 333895e..87b4604 100644
--- a/modeling/components/physicalmodel/StructuralComponentDCProperties.h
+++ b/modeling/components/physicalmodel/StructuralComponentDCProperties.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AnimationMotorAddon.cpp b/modeling/components/physicalmodel/loads/AnimationMotorAddon.cpp
index 755a541..3ef7b5c 100644
--- a/modeling/components/physicalmodel/loads/AnimationMotorAddon.cpp
+++ b/modeling/components/physicalmodel/loads/AnimationMotorAddon.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AnimationMotorAddon.h b/modeling/components/physicalmodel/loads/AnimationMotorAddon.h
index 14d8026..cbb70c3 100644
--- a/modeling/components/physicalmodel/loads/AnimationMotorAddon.h
+++ b/modeling/components/physicalmodel/loads/AnimationMotorAddon.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AnyDecoration.cpp b/modeling/components/physicalmodel/loads/AnyDecoration.cpp
index 1645e6a..caa1ae4 100644
--- a/modeling/components/physicalmodel/loads/AnyDecoration.cpp
+++ b/modeling/components/physicalmodel/loads/AnyDecoration.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AnyDecoration.h b/modeling/components/physicalmodel/loads/AnyDecoration.h
index 634a7d9..20159c6 100644
--- a/modeling/components/physicalmodel/loads/AnyDecoration.h
+++ b/modeling/components/physicalmodel/loads/AnyDecoration.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AtomDecoration.cpp b/modeling/components/physicalmodel/loads/AtomDecoration.cpp
index 277987a..1fd2c94 100644
--- a/modeling/components/physicalmodel/loads/AtomDecoration.cpp
+++ b/modeling/components/physicalmodel/loads/AtomDecoration.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/AtomDecoration.h b/modeling/components/physicalmodel/loads/AtomDecoration.h
index b65b7eb..ab33acd 100644
--- a/modeling/components/physicalmodel/loads/AtomDecoration.h
+++ b/modeling/components/physicalmodel/loads/AtomDecoration.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/Decoration.h b/modeling/components/physicalmodel/loads/Decoration.h
index ff62d75..1301d90 100644
--- a/modeling/components/physicalmodel/loads/Decoration.h
+++ b/modeling/components/physicalmodel/loads/Decoration.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsAppliedTo.cpp b/modeling/components/physicalmodel/loads/LoadsAppliedTo.cpp
index 4d1958a..a10842d 100644
--- a/modeling/components/physicalmodel/loads/LoadsAppliedTo.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsAppliedTo.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsAppliedTo.h b/modeling/components/physicalmodel/loads/LoadsAppliedTo.h
index 95b4c3a..828ca80 100644
--- a/modeling/components/physicalmodel/loads/LoadsAppliedTo.h
+++ b/modeling/components/physicalmodel/loads/LoadsAppliedTo.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsEditor.cpp b/modeling/components/physicalmodel/loads/LoadsEditor.cpp
index 5fc9b3b..f6d25d1 100644
--- a/modeling/components/physicalmodel/loads/LoadsEditor.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsEditor.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsEditor.h b/modeling/components/physicalmodel/loads/LoadsEditor.h
index 52a3976..ed6989f 100644
--- a/modeling/components/physicalmodel/loads/LoadsEditor.h
+++ b/modeling/components/physicalmodel/loads/LoadsEditor.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsManager.cpp b/modeling/components/physicalmodel/loads/LoadsManager.cpp
index 1e9a609..bf73245 100644
--- a/modeling/components/physicalmodel/loads/LoadsManager.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsManager.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,19 +24,22 @@
****************************************************************************/
-// PML/LML
+// PML
#include <pml/PhysicalModel.h>
#include <pml/MultiComponent.h>
+// LML
+#include <lml/Loads.h>
+#include <lml/Load.h>
+
+// Physical Model Component
#include "LoadsManager.h"
#include "LoadsSimulation.h"
#include "LoadsMovie.h"
#include "LoadsEditor.h"
#include "AtomDecoration.h"
#include "PMManagerDC.h"
-
#include "AtomDC.h"
-#include <lml/XMLLoads.h>
// camiTK
#include <Application.h>
diff --git a/modeling/components/physicalmodel/loads/LoadsManager.h b/modeling/components/physicalmodel/loads/LoadsManager.h
index 4a678f2..f0f5a51 100644
--- a/modeling/components/physicalmodel/loads/LoadsManager.h
+++ b/modeling/components/physicalmodel/loads/LoadsManager.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsMovie.cpp b/modeling/components/physicalmodel/loads/LoadsMovie.cpp
index 58c5ed6..8927479 100644
--- a/modeling/components/physicalmodel/loads/LoadsMovie.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsMovie.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsMovie.h b/modeling/components/physicalmodel/loads/LoadsMovie.h
index c2475c4..e0026d4 100644
--- a/modeling/components/physicalmodel/loads/LoadsMovie.h
+++ b/modeling/components/physicalmodel/loads/LoadsMovie.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsSimulation.cpp b/modeling/components/physicalmodel/loads/LoadsSimulation.cpp
index 8547548..eb1a3f5 100644
--- a/modeling/components/physicalmodel/loads/LoadsSimulation.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsSimulation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsSimulation.h b/modeling/components/physicalmodel/loads/LoadsSimulation.h
index 0fe57d0..acc16b0 100644
--- a/modeling/components/physicalmodel/loads/LoadsSimulation.h
+++ b/modeling/components/physicalmodel/loads/LoadsSimulation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsSimulationDriver.cpp b/modeling/components/physicalmodel/loads/LoadsSimulationDriver.cpp
index 0b144f0..43a2bc3 100644
--- a/modeling/components/physicalmodel/loads/LoadsSimulationDriver.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsSimulationDriver.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsSimulationDriver.h b/modeling/components/physicalmodel/loads/LoadsSimulationDriver.h
index 5766f21..127fb29 100644
--- a/modeling/components/physicalmodel/loads/LoadsSimulationDriver.h
+++ b/modeling/components/physicalmodel/loads/LoadsSimulationDriver.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsValueEvent.cpp b/modeling/components/physicalmodel/loads/LoadsValueEvent.cpp
index 8490e72..62f482a 100644
--- a/modeling/components/physicalmodel/loads/LoadsValueEvent.cpp
+++ b/modeling/components/physicalmodel/loads/LoadsValueEvent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/loads/LoadsValueEvent.h b/modeling/components/physicalmodel/loads/LoadsValueEvent.h
index 0cb83b8..bca75f4 100644
--- a/modeling/components/physicalmodel/loads/LoadsValueEvent.h
+++ b/modeling/components/physicalmodel/loads/LoadsValueEvent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/components/physicalmodel/resources/translate/translate_en.ts b/modeling/components/physicalmodel/resources/translate/translate_en.ts
index 0638c36..a8c0bfd 100644
--- a/modeling/components/physicalmodel/resources/translate/translate_en.ts
+++ b/modeling/components/physicalmodel/resources/translate/translate_en.ts
@@ -35,7 +35,7 @@
<translation></translation>
</message>
<message>
- <location filename="../../PMManagerDCPopup.cpp" line="381"/>
+ <location filename="../../PMManagerDCPopup.cpp" line="376"/>
<source>PML (*.pml)</source>
<translation></translation>
</message>
diff --git a/modeling/components/physicalmodel/resources/translate/translate_fr.ts b/modeling/components/physicalmodel/resources/translate/translate_fr.ts
index bfa64a1..d0446c6 100644
--- a/modeling/components/physicalmodel/resources/translate/translate_fr.ts
+++ b/modeling/components/physicalmodel/resources/translate/translate_fr.ts
@@ -35,7 +35,7 @@
<translation></translation>
</message>
<message>
- <location filename="../../PMManagerDCPopup.cpp" line="381"/>
+ <location filename="../../PMManagerDCPopup.cpp" line="376"/>
<source>PML (*.pml)</source>
<translation></translation>
</message>
diff --git a/modeling/components/physicalmodel/testdata/ctestdata/diaphragm.pml b/modeling/components/physicalmodel/testdata/ctestdata/diaphragm.pml
index f187c56..2261e2a 100644
--- a/modeling/components/physicalmodel/testdata/ctestdata/diaphragm.pml
+++ b/modeling/components/physicalmodel/testdata/ctestdata/diaphragm.pml
@@ -1,6481 +1,7343 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network,...)
-See
-Chabanas, M. & Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266
-doi:10.1007/b98155
-
-This diaphragm model comes from this study:
-Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. & Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748
-doi:10.1007/s00330-004-2482-2
--->
-<physicalModel name="Diaphragm model">
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Diaphragm model" nrOfAtoms="283"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="782"
+ aboutPML="See Chabanas, M. and Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266; doi:10.1007/b98155"
+ comment="This diaphragm model comes from this study: Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. and Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748; doi:10.1007/s00330-004-2482-2"
+>
+<!-- list of atoms: -->
<atoms>
-<structuralComponent name="Nodes" >
+<structuralComponent name="Nodes">
+<nrOfStructures value="283"/>
<atom>
-<atomProperties index="0" x="-52.5" y="141.491" z="-88" additionalProperties="OK" />
+<atomProperties index="0" x="-52.5" y="141.491" z="-88" additionalProperties="OK"/>
</atom>
<atom>
-<atomProperties index="1" x="22.5" y="150" z="-88" />
+<atomProperties index="1" x="22.5" y="150" z="-88"/>
</atom>
<atom>
-<atomProperties index="2" x="37.5" y="145" z="-88" />
+<atomProperties index="2" x="37.5" y="145" z="-88"/>
</atom>
<atom>
-<atomProperties index="3" x="52.5" y="141.019" z="-88" />
+<atomProperties index="3" x="52.5" y="141.019" z="-88"/>
</atom>
<atom>
-<atomProperties index="4" x="67.5" y="138.019" z="-88" />
+<atomProperties index="4" x="67.5" y="138.019" z="-88"/>
</atom>
<atom>
-<atomProperties index="5" x="82.5" y="135.495" z="-84" />
+<atomProperties index="5" x="82.5" y="135.495" z="-84"/>
</atom>
<atom>
-<atomProperties index="6" x="-82.5987" y="125.572" z="-77.1593" />
+<atomProperties index="6" x="-82.5987" y="125.572" z="-77.1593"/>
</atom>
<atom>
-<atomProperties index="7" x="-67.4784" y="133.001" z="-81.9262" />
+<atomProperties index="7" x="-67.4784" y="133.001" z="-81.9262"/>
</atom>
<atom>
-<atomProperties index="8" x="-37.5" y="150" z="-86" />
+<atomProperties index="8" x="-37.5" y="150" z="-86"/>
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diff --git a/modeling/components/physicalmodel/testdata/ctestdata/truthcube.pml b/modeling/components/physicalmodel/testdata/ctestdata/truthcube.pml
index c3e7381..b3503ea 100644
--- a/modeling/components/physicalmodel/testdata/ctestdata/truthcube.pml
+++ b/modeling/components/physicalmodel/testdata/ctestdata/truthcube.pml
@@ -1,23313 +1,24820 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network,...)
- This is a representation of the Truth cube. See:
- Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. & Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291
- doi:10.1016/S1361-8415(03)00008-2
--->
-<physicalModel>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="truthcube" nrOfAtoms="729"
+ nrOfExclusiveComponents="3"
+ nrOfInformativeComponents="2"
+ nrOfCells="1499"
+ comment=" This is a representation of the Truth cube. See: Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. and Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291 doi:10.1016/S1361-8415(03)00008-2"
+>
<!-- list of atoms: -->
<atoms>
-<structuralComponent name="element list" >
+<structuralComponent name="element list">
+<nrOfStructures value="729"/>
<atom>
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diff --git a/modeling/components/physicalmodel/testdata/diaphragm.pml b/modeling/components/physicalmodel/testdata/diaphragm.pml
index f187c56..2261e2a 100644
--- a/modeling/components/physicalmodel/testdata/diaphragm.pml
+++ b/modeling/components/physicalmodel/testdata/diaphragm.pml
@@ -1,6481 +1,7343 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network,...)
-See
-Chabanas, M. & Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266
-doi:10.1007/b98155
-
-This diaphragm model comes from this study:
-Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. & Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748
-doi:10.1007/s00330-004-2482-2
--->
-<physicalModel name="Diaphragm model">
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
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+ nrOfExclusiveComponents="1"
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+ nrOfCells="782"
+ aboutPML="See Chabanas, M. and Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266; doi:10.1007/b98155"
+ comment="This diaphragm model comes from this study: Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. and Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748; doi:10.1007/s00330-004-2482-2"
+>
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-<cell><cellProperties type="TRIANGLE" /><atomRef index="13" /><atomRef index="27" /><atomRef index="28" /></cell>
-
</structuralComponent>
</multiComponent>
</informativeComponents>
diff --git a/modeling/components/physicalmodel/testdata/truthcube.pml b/modeling/components/physicalmodel/testdata/truthcube.pml
index c3e7381..b3503ea 100644
--- a/modeling/components/physicalmodel/testdata/truthcube.pml
+++ b/modeling/components/physicalmodel/testdata/truthcube.pml
@@ -1,23313 +1,24820 @@
<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network,...)
- This is a representation of the Truth cube. See:
- Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. & Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291
- doi:10.1016/S1361-8415(03)00008-2
--->
-<physicalModel>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="truthcube" nrOfAtoms="729"
+ nrOfExclusiveComponents="3"
+ nrOfInformativeComponents="2"
+ nrOfCells="1499"
+ comment=" This is a representation of the Truth cube. See: Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. and Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291 doi:10.1016/S1361-8415(03)00008-2"
+>
<!-- list of atoms: -->
<atoms>
-<structuralComponent name="element list" >
+<structuralComponent name="element list">
+<nrOfStructures value="729"/>
<atom>
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+<atomRef index="427"/>
+<atomRef index="428"/>
+<atomRef index="429"/>
+<atomRef index="430"/>
+<atomRef index="433"/>
+<atomRef index="434"/>
+<atomRef index="435"/>
+<atomRef index="436"/>
+<atomRef index="437"/>
+<atomRef index="438"/>
+<atomRef index="439"/>
+<atomRef index="442"/>
+<atomRef index="443"/>
+<atomRef index="444"/>
+<atomRef index="445"/>
+<atomRef index="446"/>
+<atomRef index="447"/>
+<atomRef index="448"/>
+<atomRef index="451"/>
+<atomRef index="452"/>
+<atomRef index="453"/>
+<atomRef index="454"/>
+<atomRef index="455"/>
+<atomRef index="456"/>
+<atomRef index="457"/>
+<atomRef index="460"/>
+<atomRef index="461"/>
+<atomRef index="462"/>
+<atomRef index="463"/>
+<atomRef index="464"/>
+<atomRef index="465"/>
+<atomRef index="466"/>
+<atomRef index="469"/>
+<atomRef index="470"/>
+<atomRef index="471"/>
+<atomRef index="472"/>
+<atomRef index="473"/>
+<atomRef index="474"/>
+<atomRef index="475"/>
+<atomRef index="496"/>
+<atomRef index="497"/>
+<atomRef index="498"/>
+<atomRef index="499"/>
+<atomRef index="500"/>
+<atomRef index="501"/>
+<atomRef index="502"/>
+<atomRef index="505"/>
+<atomRef index="506"/>
+<atomRef index="507"/>
+<atomRef index="508"/>
+<atomRef index="509"/>
+<atomRef index="510"/>
+<atomRef index="511"/>
+<atomRef index="514"/>
+<atomRef index="515"/>
+<atomRef index="516"/>
+<atomRef index="517"/>
+<atomRef index="518"/>
+<atomRef index="519"/>
+<atomRef index="520"/>
+<atomRef index="523"/>
+<atomRef index="524"/>
+<atomRef index="525"/>
+<atomRef index="526"/>
+<atomRef index="527"/>
+<atomRef index="528"/>
+<atomRef index="529"/>
+<atomRef index="532"/>
+<atomRef index="533"/>
+<atomRef index="534"/>
+<atomRef index="535"/>
+<atomRef index="536"/>
+<atomRef index="537"/>
+<atomRef index="538"/>
+<atomRef index="541"/>
+<atomRef index="542"/>
+<atomRef index="543"/>
+<atomRef index="544"/>
+<atomRef index="545"/>
+<atomRef index="546"/>
+<atomRef index="547"/>
+<atomRef index="550"/>
+<atomRef index="551"/>
+<atomRef index="552"/>
+<atomRef index="553"/>
+<atomRef index="554"/>
+<atomRef index="555"/>
+<atomRef index="556"/>
+<atomRef index="577"/>
+<atomRef index="578"/>
+<atomRef index="579"/>
+<atomRef index="580"/>
+<atomRef index="581"/>
+<atomRef index="582"/>
+<atomRef index="583"/>
+<atomRef index="586"/>
+<atomRef index="587"/>
+<atomRef index="588"/>
+<atomRef index="589"/>
+<atomRef index="590"/>
+<atomRef index="591"/>
+<atomRef index="592"/>
+<atomRef index="595"/>
+<atomRef index="596"/>
+<atomRef index="597"/>
+<atomRef index="598"/>
+<atomRef index="599"/>
+<atomRef index="600"/>
+<atomRef index="601"/>
+<atomRef index="604"/>
+<atomRef index="605"/>
+<atomRef index="606"/>
+<atomRef index="607"/>
+<atomRef index="608"/>
+<atomRef index="609"/>
+<atomRef index="610"/>
+<atomRef index="613"/>
+<atomRef index="614"/>
+<atomRef index="615"/>
+<atomRef index="616"/>
+<atomRef index="617"/>
+<atomRef index="618"/>
+<atomRef index="619"/>
+<atomRef index="622"/>
+<atomRef index="623"/>
+<atomRef index="624"/>
+<atomRef index="625"/>
+<atomRef index="626"/>
+<atomRef index="627"/>
+<atomRef index="628"/>
+<atomRef index="631"/>
+<atomRef index="632"/>
+<atomRef index="633"/>
+<atomRef index="634"/>
+<atomRef index="635"/>
+<atomRef index="636"/>
+<atomRef index="637"/>
</cell>
</structuralComponent>
</multiComponent>
diff --git a/modeling/components/pmlcomponent/CMakeLists.txt b/modeling/components/pmlcomponent/CMakeLists.txt
new file mode 100644
index 0000000..4043f34
--- /dev/null
+++ b/modeling/components/pmlcomponent/CMakeLists.txt
@@ -0,0 +1,10 @@
+camitk_extension( COMPONENT_EXTENSION
+ NEEDS_CEP_LIBRARIES pml pmlschema
+ NEEDS_XSD
+ INSTALL_ALL_HEADERS
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "CamiTK component to manage a physical model."
+ TEST_APPLICATION ${APPLICATION_TEST_COMPONENT}
+ DEFINES COMPILE_PML_COMPONENT_API
+)
+
diff --git a/modeling/components/pmlcomponent/PMLComponent.cpp b/modeling/components/pmlcomponent/PMLComponent.cpp
new file mode 100644
index 0000000..aedd9f2
--- /dev/null
+++ b/modeling/components/pmlcomponent/PMLComponent.cpp
@@ -0,0 +1,578 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+// CamiTK stuff
+#include <Log.h>
+#include <Geometry.h>
+#include <Property.h>
+#include <Application.h>
+#include <InteractiveViewer.h>
+#include <AbortException.h>
+#include <Action.h>
+#include "PMLComponent.h"
+
+// Qt stuff
+#include <QFileInfo>
+#include <QString>
+#include <QMessageBox>
+#include <QPixmap>
+
+// PML library includes
+#include <PhysicalModel.h>
+#include <MultiComponent.h>
+#include <Atom.h>
+#include <StructuralComponent.h>
+#include <CellProperties.h>
+
+// VTK stuff
+#include<vtkUnstructuredGrid.h>
+#include <vtkCellArray.h>
+#include <vtkCell.h>
+#include <vtkHexahedron.h>
+#include <vtkTetra.h>
+#include <vtkWedge.h>
+#include <vtkPyramid.h>
+#include <vtkPolyLine.h>
+#include <vtkLine.h>
+#include <vtkTriangle.h>
+#include <vtkQuad.h>
+#include <vtkVertex.h>
+#include <vtkPolyVertex.h>
+#include <vtkProp.h>
+#include <vtkDataSetMapper.h>
+#include <vtkProperty.h>
+#include <vtkPolyDataMapper.h>
+#include <vtkSphereSource.h>
+#include <vtkGlyph3D.h>
+#include <vtkViewport.h>
+#include <vtkSelection.h>
+#include <vtkDoubleArray.h>
+#include <vtkDataSetAttributes.h>
+
+using namespace camitk;
+
+//-------------------- Constructor -------------------
+PMLComponent::PMLComponent ( const QString & file ) throw ( AbortException ) : MeshComponent ( file ) {
+ // Open the .pml file using library-pml
+ try {
+ Application::showStatusBarMessage ( "Loading " + QFileInfo ( file ).fileName() + "..." );
+ physicalModel = new PhysicalModel ( file.toStdString().c_str() );
+ } catch
+ ( PMLAbortException & e ) {
+ throw AbortException ( "The PML XML document cannot be opened: " + std::string ( e.what() ) );
+ }
+
+ init();
+}
+
+PMLComponent::PMLComponent ( PhysicalModel * p, const QString & originalFile ) : MeshComponent ( originalFile ) {
+ physicalModel = p;
+ init();
+}
+
+//-------------------- Destructor -------------------
+PMLComponent::~PMLComponent() {
+ atomPointIdMap.clear();
+
+ delete physicalModel;
+ physicalModel = NULL;
+}
+
+//-------------------- init -------------------
+void PMLComponent::init() {
+ // Create the mesh corresponding to the model
+ Application::showStatusBarMessage ( "Creating PML 3D representation..." );
+ create3DStructure();
+ Application::showStatusBarMessage("Creating Atom VTK pipeline...");
+ createAtomSelectionVTKPipeline();
+ Application::showStatusBarMessage ( "PML Initialization done...", 1000 );
+
+ neverSelected = true;
+
+ Application::resetProgressBar();
+}
+
+//-------------------- setSelected -------------------
+void PMLComponent::setSelected ( const bool selected, const bool recursive ) {
+ camitk::Component::setSelected ( selected, false );
+
+ // set the default action to be the PML explorer
+ if ( neverSelected && selected ) {
+ Action * defaultAction = Application::getAction ( "Explore PML Content" );
+
+ if ( defaultAction ) {
+ defaultAction->getQAction()->trigger();
+ }
+
+ neverSelected = false;
+ }
+}
+
+//-------------------- initDynamicProperties -------------------
+void PMLComponent::initDynamicProperties() {
+ setName ( QString ( physicalModel->getName().c_str() ) );
+
+ // First add all generic mesh component properties
+ MeshComponent::initDynamicProperties();
+
+ // Then add all R/O specific properties
+ Property * nbOfAtomProp = new Property ( "Number of Atoms", QVariant ( ( int ) physicalModel->getNumberOfAtoms() ) , "The number of atoms in the PML file", "" );
+ nbOfAtomProp->setReadOnly ( true );
+ addProperty ( nbOfAtomProp );
+
+ Property * nbOfCellProp = new Property ( "Number of Cells", QVariant ( ( int ) physicalModel->getNumberOfCells() ) , "The number of cells in the PML file", "" );
+ nbOfCellProp->setReadOnly ( true );
+ addProperty ( nbOfCellProp );
+
+ Property * nbOfECProp = new Property ( "Number of Exclusive Components", QVariant ( ( int ) physicalModel->getNumberOfExclusiveComponents() ) , "The number of exclusive components in the PML file", "" );
+ nbOfECProp->setReadOnly ( true );
+ addProperty ( nbOfECProp );
+
+ Property * nbOfICProp = new Property ( "Number of Informative Components", QVariant ( ( int ) physicalModel->getNumberOfInformativeComponents() ) , "The number of exclusive components in the PML file", "" );
+ nbOfICProp->setReadOnly ( true );
+ addProperty ( nbOfICProp );
+
+ // finally add all the specific editable properties
+ for ( unsigned int i = 0; i < physicalModel->getProperties()->numberOfFields(); i++ ) {
+ addProperty ( new Property ( physicalModel->getProperties()->getField ( i ).c_str(), QVariant ( physicalModel->getProperties()->getString ( physicalModel->getProperties()->getField ( i ) ).c_str() ), "Custom property read from XML", "" ) );
+ }
+}
+
+//-------------------- updateProperty -------------------
+void PMLComponent::updateProperty ( QString name, QVariant value ) {
+ // modify existing properties
+ Properties * pmProp = physicalModel->getProperties();
+
+ if ( pmProp->isAField ( name.toStdString() ) ) {
+ // set the corresponding property (field)
+ pmProp->set ( name.toStdString(), value.toString().toStdString() );
+ } else {
+ // this was not a property, check inherited class
+ MeshComponent::updateProperty ( name, value );
+ }
+}
+
+//-------------------- create3DStructure -------------------
+void PMLComponent::create3DStructure() {
+ // The unstructured grid that will contain our 3D structure
+ if ( mainGrid ) {
+ mainGrid->Delete(); // free memory
+ atomPointIdMap.clear();
+ scCellIdArrayMap.clear();
+ scCellSelectionMap.clear();
+ }
+
+ mainGrid = vtkUnstructuredGrid::New();
+ mainGrid->Allocate ( physicalModel->getNumberOfCells(), physicalModel->getNumberOfCells() );
+
+ // Direct memory sharing of the position array (FAST!!!)
+ // see discussion http://public.kitware.com/pipermail/vtkusers/2010-January/056521.html
+ vtkSmartPointer<vtkDoubleArray> underlyingArray = vtkSmartPointer<vtkDoubleArray>::New();
+ underlyingArray->SetNumberOfComponents ( 3 ); // 3 dimensions
+ underlyingArray->SetArray ( physicalModel->getPositionPointer(), 3 * physicalModel->getNumberOfAtoms(), 1 );
+
+ // The points corresponding to the atoms
+ thePoints = vtkSmartPointer<vtkPoints>::New();
+ // we need double precision to share memory pointer
+ thePoints->SetData ( underlyingArray );
+
+ // to get the pointer from the vtkPoints, use:
+ // double * pts = (double *)thePoints->GetVoidPointer(0)
+
+ // build the correspondance map
+ for ( unsigned int atomOrderId = 0; atomOrderId < physicalModel->getAtoms()->getNumberOfStructures(); atomOrderId++ ) {
+ Atom * a = dynamic_cast<Atom *> ( physicalModel->getAtoms()->getStructure ( atomOrderId ) );
+ // register the atom, vtkPointId pair
+ atomPointIdMap.insert ( std::AtomPointIdPair ( a, atomOrderId ) );
+ }
+
+ mainGrid->SetPoints ( thePoints );
+ Application::setProgressBarValue ( ( int ) ( ( 1.0 / ( float ) ( physicalModel->getNumberOfAtoms() + physicalModel->getNumberOfCells() ) ) * 100.0 ) );
+
+ // Parse the exclusive components
+ MultiComponent * ecs = physicalModel->getExclusiveComponents();
+ parseMultiComponent ( ecs );
+
+ // Parse the informative components
+ MultiComponent * ics = physicalModel->getInformativeComponents();
+
+ if ( ics ) {
+ parseMultiComponent ( ics );
+ }
+
+ // set the component geometry to this one (initRepresentation also calls initDynamicProperties()...)
+ initRepresentation ( mainGrid );
+
+ // Tell this component is visible in the 3D viewer, otherwise we won't see it!
+ setVisibility ( InteractiveViewer::get3DViewer(), true );
+}
+
+//-------------------- parseMultiComponent -------------------
+void PMLComponent::parseMultiComponent ( MultiComponent * parsedMC ) {
+ for ( unsigned int nbComp = 0; nbComp < parsedMC->getNumberOfSubComponents(); nbComp++ ) {
+ if ( StructuralComponent * sc = dynamic_cast<StructuralComponent *> ( parsedMC->getSubComponent ( nbComp ) ) ) {
+ // check if this structural component is made of cells or simply a list of atoms references.
+ if ( sc->getNumberOfCells() > 0 ) {
+ // create the 3D VTK structure for each cell and store it in the map
+ for ( unsigned int indexCell = 0; indexCell < sc->getNumberOfCells(); indexCell++ ) {
+ Cell * cellPML = sc->getCell ( indexCell );
+ vtkSmartPointer<vtkCell> cellVTK = cellToVTK ( cellPML );
+ int cellIndex = mainGrid->InsertNextCell ( cellVTK->GetCellType(), cellVTK->GetPointIds() );
+ cellPML->setIndex ( cellIndex );
+ }
+ } else {
+ vtkSmartPointer<vtkPolyVertex> scVTK = atomSCToVTK ( sc );
+ mainGrid->InsertNextCell ( scVTK->GetCellType(), scVTK->GetPointIds() );
+ }
+ } else if ( MultiComponent * mc = dynamic_cast<MultiComponent *> ( parsedMC->getSubComponent ( nbComp ) ) ) {
+ parseMultiComponent ( mc ); // recursive call to parse multicomponent children
+ } else {
+ CAMITK_ERROR ( "PMLComponent", "create3DStructure", "Component is neither a SC nor a MC: " + nbComp );
+ }
+ }
+}
+
+
+//-------------------- cellToVTK -------------------
+vtkSmartPointer<vtkCell> PMLComponent::cellToVTK ( Cell * cell ) {
+ // The vtk cell we will construct, note that vtkCell is an abstract type (interface).
+ vtkSmartPointer<vtkCell> cell3D;
+
+ // Get the cell type
+ switch ( cell->getType() ) {
+ case StructureProperties::TETRAHEDRON:
+ cell3D = vtkTetra::New();
+ break;
+
+ case StructureProperties::HEXAHEDRON:
+ cell3D = vtkHexahedron::New();
+ break;
+
+ case StructureProperties::WEDGE:
+ cell3D = vtkWedge::New();
+ break;
+
+ case StructureProperties::PYRAMID:
+ cell3D = vtkPyramid::New();
+ break;
+
+ case StructureProperties::POLY_LINE:
+ cell3D = vtkPolyLine::New();
+ break;
+
+ case StructureProperties::LINE:
+ cell3D = vtkLine::New();
+ break;
+
+ case StructureProperties::POLY_VERTEX:
+ cell3D = vtkPolyVertex::New();
+ break;
+
+ case StructureProperties::TRIANGLE:
+ cell3D = vtkTriangle::New();
+ break;
+
+ case StructureProperties::QUAD:
+ cell3D = vtkQuad::New();
+ break;
+
+ default:
+ cell3D = vtkVertex::New();
+ break;
+ }
+
+ // insert the atoms of the cell by references
+ cell3D->GetPointIds()->SetNumberOfIds ( cell->getNumberOfStructures() );
+
+ for ( unsigned int i = 0; i < cell->getNumberOfStructures(); i++ ) {
+ Atom * a = ( Atom * ) cell->getStructure ( i );
+ cell3D->GetPointIds()->SetId ( i, getPointId ( a ) );
+ }
+
+ // Update progressbar status
+ static unsigned int cellCreated = 0;
+ cellCreated++;
+ Application::setProgressBarValue ( ( int ) ( ( ( float ) ( physicalModel->getNumberOfAtoms() + cellCreated ) / ( float ) ( physicalModel->getNumberOfAtoms() + physicalModel->getNumberOfCells() ) ) * 100.0 ) );
+
+ return cell3D;
+}
+
+//-------------------- atomSCToVTK -------------------
+vtkSmartPointer<vtkPolyVertex> PMLComponent::atomSCToVTK ( StructuralComponent * sc ) {
+ // A structural component with no Cell information only contains a list of atoms references
+ // => It is a polygon
+ vtkSmartPointer<vtkPolyVertex> cellPolygon = vtkPolyVertex::New();
+
+ // insert the atoms of the cell by references
+ cellPolygon->GetPointIds()->SetNumberOfIds ( sc->getNumberOfStructures() );
+
+ for ( unsigned int i = 0; i < sc->getNumberOfStructures(); i++ ) {
+ Atom * a = ( Atom * ) sc->getStructure ( i );
+ cellPolygon->GetPointIds()->SetId ( i, getPointId ( a ) );
+ }
+
+ return cellPolygon;
+}
+
+//-------------------- refreshDisplay -------------------
+void PMLComponent::refreshDisplay() {
+ // Force the modification flag of the point set (just in case position were modified somewhere else,
+ // for instance in a MML monitor) in order to obtain a real refresh
+ getPointSet()->Modified();
+ InteractiveViewer::get3DViewer()->refresh();
+ // shade the current selected component in order to see the selected item (SC, MC, Atoms or Cells)
+ myGeometry->setEnhancedModes ( InterfaceGeometry::Shaded );
+}
+
+//-------------------- createAtomSelectionVTKPipeline -------------------
+void PMLComponent::createAtomSelectionVTKPipeline() {
+
+ // Create everything to manage atom selection
+ selectedAtomSelection = vtkSmartPointer<vtkSelection>::New();
+ vtkSmartPointer<vtkSelectionNode> selectedAtomSelectionNode = vtkSmartPointer<vtkSelectionNode>::New();
+ selectedAtomSelectionNode->SetFieldType ( vtkSelectionNode::POINT );
+ selectedAtomSelectionNode->SetContentType ( vtkSelectionNode::INDICES );
+ selectedAtomIdArray = vtkIdTypeArray::New();
+ // The selection extractor, attached to the selection and the 3D structure (unstructured grid)
+ vtkSmartPointer<vtkExtractSelection> selectedAtomExtractor = vtkSmartPointer<vtkExtractSelection>::New();
+ selectedAtomExtractor->SetInputConnection ( 0, getDataPort() );
+ selectedAtomExtractor->SetInputData ( 1, selectedAtomSelection );
+
+ // create the atom Glyph Actor
+ vtkSmartPointer<vtkSphereSource> glyphSphere = vtkSmartPointer<vtkSphereSource>::New();
+ glyphSphere->SetRadius ( getBoundingRadius() / 50.0 );
+
+ vtkSmartPointer<vtkGlyph3D> atomSphere = vtkSmartPointer<vtkGlyph3D>::New();
+ atomSphere->SetInputConnection ( selectedAtomExtractor->GetOutputPort() );
+ atomSphere->SetSourceConnection ( glyphSphere->GetOutputPort() );
+
+ vtkSmartPointer<vtkDataSetMapper> selectionMapper = vtkSmartPointer<vtkDataSetMapper>::New();
+ selectionMapper->SetInputConnection ( atomSphere->GetOutputPort() );
+
+ vtkSmartPointer<vtkActor> atomGlyphActor = vtkSmartPointer<vtkActor>::New();
+ atomGlyphActor->SetPickable ( false );
+ atomGlyphActor->GetProperty()->SetRepresentationToSurface();
+ atomGlyphActor->GetProperty()->SetColor ( 1, 0, 0 );
+ atomGlyphActor->GetProperty()->SetOpacity ( 0.8 );
+ atomGlyphActor->SetMapper ( selectionMapper );
+ atomGlyphActor->SetVisibility ( true );
+
+ // insert the glyph in the visualization pipeline, as an extraprop
+ removeProp("Selected Atoms");
+ addProp ( "Selected Atoms", atomGlyphActor );
+}
+
+//-------------------- createCellSelectionVTKPipeline -------------------
+void PMLComponent::createCellSelectionVTKPipeline ( const StructuralComponent * sc ) {
+ // create the vtk pipeline if needed
+ if ( !scCellSelectionMap.contains ( sc->getName().c_str() ) ) {
+ // Create the vtkSelection
+ vtkSmartPointer<vtkSelection> selection = vtkSelection::New();
+
+ // The selection extractor, bound to the selection and the 3D structure (unstructured grid)
+ vtkSmartPointer<vtkExtractSelection> selectionExtractor = vtkSmartPointer<vtkExtractSelection>::New();
+ selectionExtractor->SetInputConnection ( 0, getDataPort() );
+ selectionExtractor->SetInputData ( 1, selection );
+
+ // The selection actor, with its color properties adapted to the input structural component
+ vtkSmartPointer<vtkActor> selectionActor = vtkSmartPointer<vtkActor>::New();
+ selectionActor->SetPickable ( false );
+
+ double color_R, color_G, color_B, color_A = 0.5;
+ sc->getColor ( &color_R, &color_G, &color_B, &color_A );
+ selectionActor->GetProperty()->SetColor ( color_R, color_G, color_B );
+ selectionActor->GetProperty()->SetPointSize ( 5 );
+ selectionActor->GetProperty()->SetOpacity ( 0.5 );
+
+ // The selection mapper to be used
+ vtkSmartPointer<vtkDataSetMapper> selectionMapper = vtkSmartPointer<vtkDataSetMapper>::New();
+ selectionActor->SetMapper ( selectionMapper );
+ selectionMapper->SetInputConnection ( selectionExtractor->GetOutputPort() );
+
+ // Register the actor for this structural component selection within the component
+ removeProp("Selected cells for " + QString ( sc->getName().c_str() ));
+ addProp ( "Selected cells for " + QString ( sc->getName().c_str() ), selectionActor );
+
+ // Store the references for selection in the corresponding QMap
+ vtkSmartPointer<vtkSelectionNode> selectionNodes = vtkSelectionNode::New();
+ selectionNodes->SetFieldType ( vtkSelectionNode::CELL );
+ selectionNodes->SetContentType ( vtkSelectionNode::INDICES );
+ vtkSmartPointer<vtkIdTypeArray> selectionIdTypesArray = vtkIdTypeArray::New();
+
+ scCellSelectionMap.insert ( QString ( sc->getName().c_str() ), selection );
+ scCellIdArrayMap.insert ( QString ( sc->getName().c_str() ), selectionIdTypesArray );
+ }
+
+}
+
+//-------------------- selectAtom -------------------
+void PMLComponent::selectAtom ( const Atom * atom ) {
+ // insert the id for the selection.
+ selectedAtomIdArray->InsertNextValue ( getPointId ( atom ) );
+}
+
+//-------------------- selectCell -------------------
+void PMLComponent::selectCell ( Cell * cell , bool showAtomGlyph ) {
+ const StructuralComponent * parent = cell->getParentSC();
+
+ // create the pipeline if needed
+ createCellSelectionVTKPipeline ( parent );
+
+ // Find the corresponding vtk selection node according to the parent
+ vtkSmartPointer<vtkIdTypeArray> array = scCellIdArrayMap.value ( parent->getName().c_str() );
+
+ if ( !array ) {
+ CAMITK_ERROR ( "PMLComponent", "selectCell", "array is null" );
+ }
+
+ array->InsertNextValue ( cell->getIndex() ); // the Cell's index = vtkCell's id in the 3D structure.
+
+ // select also the atom
+ if ( showAtomGlyph ) {
+ for ( unsigned int i=0; i<cell->getNumberOfStructures(); i++ ) {
+ Atom *a = dynamic_cast<Atom*> ( cell->getStructure ( i ) );
+ selectAtom ( a );
+ }
+ }
+}
+
+//-------------------- selectSC -------------------
+void PMLComponent::selectSC ( StructuralComponent * sc , bool showAtomGlyph ) {
+ // Hightlight all the content of the given structural component
+ switch ( sc->composedBy() ) {
+ case StructuralComponent::ATOMS:
+ for ( unsigned int i = 0; i < sc->getNumberOfStructures(); i++ ) {
+ if ( Atom * a = dynamic_cast<Atom *> ( sc->getStructure ( i ) ) ) {
+ selectAtom ( a );
+ }
+ }
+
+ break;
+
+ case StructuralComponent::CELLS:
+ for ( unsigned int i = 0; i < sc->getNumberOfStructures(); i++ ) {
+ if ( Cell * c = dynamic_cast<Cell *> ( sc->getStructure ( i ) ) ) {
+ selectCell ( c, showAtomGlyph );
+ }
+ }
+
+ break;
+
+ default:
+ break;
+ }
+}
+
+//-------------------- selectMC -------------------
+void PMLComponent::selectMC ( MultiComponent * selectedMC , bool showAtomGlyph ) {
+ // Select all the multicomponent subcomponents in the 3D structure
+ for ( unsigned int subCompIndex = 0; subCompIndex < selectedMC->getNumberOfSubComponents(); subCompIndex++ ) {
+ if ( MultiComponent * mc = dynamic_cast<MultiComponent *> ( selectedMC->getSubComponent ( subCompIndex ) ) ) {
+ selectMC ( mc, showAtomGlyph );
+ } else if ( StructuralComponent * sc = dynamic_cast<StructuralComponent *> ( selectedMC->getSubComponent ( subCompIndex ) ) ) {
+ selectSC ( sc, showAtomGlyph );
+ }
+ }
+}
+
+//-------------------- updateSelection -------------------
+void PMLComponent::updateSelection() {
+
+ // refresh atom selection actors
+ selectedAtomSelection->RemoveAllNodes();
+ vtkSmartPointer<vtkSelectionNode> selectedAtomSelectionNode = vtkSmartPointer<vtkSelectionNode>::New();
+ selectedAtomSelectionNode->SetFieldType ( vtkSelectionNode::POINT );
+ selectedAtomSelectionNode->SetContentType ( vtkSelectionNode::INDICES );
+ selectedAtomSelectionNode->SetSelectionList ( selectedAtomIdArray );
+ selectedAtomSelection->AddNode ( selectedAtomSelectionNode );
+ MeshComponent::addSelection ( "Selected Atoms", vtkSelectionNode::POINT, vtkSelectionNode::INDICES, selectedAtomIdArray, MeshSelectionModel::REPLACE );
+
+ // refresh all cells selection actors + merge all in one big selection
+ vtkSmartPointer<vtkIdTypeArray> allSelectedCells = vtkSmartPointer<vtkIdTypeArray>::New();
+
+ for ( QMap<QString, vtkSmartPointer<vtkSelection> >::const_iterator it = scCellSelectionMap.constBegin();
+ it != scCellSelectionMap.constEnd(); it++ ) {
+ QString scName = it.key();
+ vtkSmartPointer<vtkSelection> cellsSelection = it.value();
+ vtkSmartPointer<vtkIdTypeArray> array = scCellIdArrayMap.value ( scName );
+ cellsSelection->RemoveAllNodes();
+ vtkSmartPointer<vtkSelectionNode> cellSelectionNode = vtkSelectionNode::New();
+ cellSelectionNode->SetFieldType ( vtkSelectionNode::CELL );
+ cellSelectionNode->SetContentType ( vtkSelectionNode::INDICES );
+ cellSelectionNode->SetSelectionList ( array );
+ cellsSelection->AddNode ( cellSelectionNode );
+
+ // merge the selection indices
+ for ( vtkIdType id = 0; id < array->GetNumberOfTuples(); id++ ) {
+ allSelectedCells->InsertNextTuple ( id, array );
+ }
+
+ }
+
+ MeshComponent::addSelection ( "Selected Cells", vtkSelectionNode::CELL, vtkSelectionNode::INDICES, allSelectedCells, MeshSelectionModel::REPLACE );
+
+}
+
+//-------------------- unselectItem -------------------
+void PMLComponent::unselectItems() {
+ // reset selectedAtomIdArray
+ selectedAtomIdArray = vtkIdTypeArray::New();
+
+ // Reinsert a new vtkIdTypeArray for each SC in the Cells maps to clean selections
+ for ( QMap<QString, vtkSmartPointer<vtkIdTypeArray> >::const_iterator it = scCellIdArrayMap.constBegin();
+ it != scCellIdArrayMap.constEnd(); it++ ) {
+ scCellIdArrayMap.insert ( it.key(), vtkIdTypeArray::New() );
+ }
+}
+
+
+//------------------------ addSelection ---------------------
+int PMLComponent::addSelection ( const QString & name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy ) {
+ if ( fieldType == vtkSelectionNode::POINT ) {
+ // point picked -> atom selection
+ vtkSmartPointer<vtkIdTypeArray> idTypeArray = vtkIdTypeArray::SafeDownCast ( array );
+ if ( idTypeArray ) {
+ selectedAtomIdArray = idTypeArray;
+ updateSelection();
+ return getSelectionIndex("Selected Atoms");
+ }
+ return -1;
+ } else {
+ // something else happened
+ return MeshComponent::addSelection ( name, fieldType, contentType, array, policy );
+ }
+}
+
+//------------------------ getPixmap ---------------------
+#include "physicalmodel_20x20.xpm"
+QPixmap * PMLComponent::myPixmap = NULL;
+QPixmap PMLComponent::getIcon() {
+ if ( !myPixmap ) {
+ myPixmap = new QPixmap ( physicalmodel_20x20 );
+ }
+
+ return ( *myPixmap );
+}
+
+
diff --git a/modeling/components/pmlcomponent/PMLComponent.h b/modeling/components/pmlcomponent/PMLComponent.h
new file mode 100644
index 0000000..cab7182
--- /dev/null
+++ b/modeling/components/pmlcomponent/PMLComponent.h
@@ -0,0 +1,283 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#ifndef PML_COMPONENT_H
+#define PML_COMPONENT_H
+
+// stl includes
+#include <map>
+
+// QT forward declaration
+class QString;
+
+// Qt includes
+#include <QObject>
+
+// lib pml forward declaration
+class PhysicalModel;
+class StructuralComponent;
+class MultiComponent;
+class Atom;
+class Cell;
+
+// vtk forward declarations
+class vtkUnstructuredGrid;
+class vtkPolyVertex;
+class vtkSelection;
+class vtkIdTypeArray;
+
+// CamiTK forward declaration
+namespace camitk {
+class AbortException;
+}
+
+// CamiTK include
+#include <MeshComponent.h>
+#include "PMLComponentAPI.h"
+
+// VTK includes
+#include <vtkSelectionNode.h>
+#include <vtkExtractSelection.h>
+
+namespace std {
+/** As the PhysicalModel atom index can be different to the node index (continuity in id is not mandatory in PML)
+ * a map is needed to link the atom index with its corresponding vtkPoint Id
+ * definition of a couple (=STL pair) [Atom *, vtkIdType]
+ * this associates an atom to its vtkPoint Id
+ */
+typedef std::pair<const Atom *, const vtkIdType> AtomPointIdPair;
+/** definition of the association set (=map in STL) AtomPointIdMap.
+ * AtomPointIdMap associate all the Atom with their vtkPoint Id.
+ * The key is the atom, so that it is simple to retrieve its corresponding point Id
+ * (which is supposed to be the most often used functionnality).
+ */
+typedef std::map <const Atom *, const vtkIdType> AtomPointIdMap;
+/** the iterator corresponding to the AtomPointIdMap map */
+typedef std::map <const Atom *, const vtkIdType>::iterator AtomPointIdMapIterator;
+}
+
+/**
+ * @ingroup group_cepmodeling_components_pml
+ *
+ * @brief
+ * This class manages a physical model (PML) CamiTK component.
+ *
+ * This class inherits from camitk::MeshComponent.
+ * It creates the 3D VTK structures corresponding to the PML structures (atoms, cells, structural components),
+ * allows to quickly selecting PML element and highlight them in the 3D structure (using vtkSelection extractors) and
+ * display usefull PML properties (given as XML attributes in the PML files) as @see camitk::Property.
+ *
+ * @note There are several vtkSelection extractor (2 per structural component in the PML structure).
+ * One for the POINTS selection (the atoms) and one for the CELLS (the PML Cells).
+ * They are configured to display the corresponding selection in the Structural Component color property (if provided).
+ *
+ * @note The action PMLExploreAction uses this selection methods to allows selecting PML structure elements throught a simple
+ * tree view widget.
+ *
+ **/
+class PML_COMPONENT_API PMLComponent : public camitk::MeshComponent {
+ Q_OBJECT
+
+public:
+ /// Construct the PML component directly from the .pml xml file.
+ /// @param filename: The input .pml xml file to build the physical model from.
+ PMLComponent(const QString& file) throw(camitk::AbortException);
+
+ /** Create the PML component directly from the PhysicalModel (also have to give the original pml filename)
+ * @param p the physicalModel (already instanciated and build)
+ * @param originalFile the filename from which p was build
+ */
+ PMLComponent(PhysicalModel *p, const QString &originalFile);
+
+ /// destructor
+ virtual ~PMLComponent();
+
+ /// get the pixmap for physical model component
+ virtual QPixmap getIcon();
+
+ /// update top-level properties and synchronize the physical model values
+ virtual void updateProperty(QString name, QVariant value);
+
+ /** Update the selection flag (this method is overridden in order to show the default
+ * modeling action when the component is selected for the first time).
+ *
+ * @param b the value of the flag (true means "is selected")
+ * @param recursive if true (default), also updates the children Component selection flags.
+ */
+ virtual void setSelected(const bool b, const bool recursive = true);
+
+ ///@name Specific methods for PML component
+ ///@{
+ /// Return the PhysicalModel object associated to the component
+ PhysicalModel* getPhysicalModel() {
+ return this->physicalModel;
+ }
+
+ /// get the point Id from the corresponding atom, this is the opposite of pml->getAtom(id)
+ vtkIdType getPointId(const Atom *a);
+
+ /// initialize information (properties) and geometric representation from the physical model
+ void init();
+ ///@}
+
+ /// @name 3D structure element selection methods
+ ///@{
+ /// Select the given pml::Cell in the 3D strucutre
+ /// @param cell The Cell to highlight
+ void selectCell(Cell* cell, bool showAtomGlyph);
+
+ /// Select the given pml::Atom in the 3D structure
+ /// @param atom The Atom to highlight
+ void selectAtom(const Atom* atom);
+
+ /// Select the given structural component in the 3D structure by highlighting all its atoms and cells
+ /// @param sc The structural component to highlight
+ void selectSC(StructuralComponent* sc, bool showAtomGlyph);
+
+ /// Select the given multi component in the 3D structure by highlighting all its structural components
+ /// @param mc The multi component to highlight
+ void selectMC(MultiComponent* mc, bool showAtomGlyph);
+
+ /// Unselect all the SC, MC, Atoms and Cells previously selected on the 3D structure
+ void unselectItems();
+
+ /// Update the POINTS and CELLS selection for the whole 3D structure by telling the corresponding extractors
+ /// new vtkIds have been added to the selection lists.
+ void updateSelection();
+
+ /// Refresh the display of the component according to the selected 3D items by the user.
+ void refreshDisplay();
+
+ /**
+ * @brief Add a selection (inherited from MeshComponent inorder to show a glyph on selected atoms).
+ *
+ * If the name of the selection already exists, the data of the existing
+ * selection are updated according to the SelectionPolicy flag.
+ *
+ * @param name name of the selection
+ * @param fieldType field type of the selection (one of vtkSelectionNode::SelectionField)
+ * @param contentType content type (one of vtkSelectionNode::SelectionContent)
+ * @param array array of the selection
+ * @param policy policy to update the existing selection
+ * @return the index of the added selection in the selection list
+ */
+ virtual int addSelection ( const QString& name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, camitk::MeshSelectionModel::InsertionPolicy policy = camitk::MeshSelectionModel::REPLACE );
+
+
+ ///@}
+
+protected:
+ /// create and initialize dynamic properties using the global xml attributes from the PhysicalModel object
+ virtual void initDynamicProperties();
+
+private:
+
+ /// The library pml object that uses pmlschema to read the pml information for the xml file.
+ PhysicalModel* physicalModel;
+
+ /// the PMLComponent icon
+ static QPixmap * myPixmap;
+
+ /// the first selection should trigger the pml exporer action (default action)
+ bool neverSelected;
+
+ /// @name 3D structure creation
+ ///@{
+ /// The 3D VTK cloup points of the atoms read
+ vtkSmartPointer<vtkPoints> thePoints;
+
+ /// The 3D grid containing all the cells of the PML
+ vtkSmartPointer<vtkUnstructuredGrid> mainGrid;
+
+ /// the Atom / vtkPoint Id map
+ std::AtomPointIdMap atomPointIdMap;
+
+ /// Create the 3D VTK structure representing the mesh.
+ void create3DStructure();
+
+ /// Create the 3D structure of the given MultiComponent and its children (recursively).
+ /// @param mc: The MultiComponent to build a 3D structure from.
+ void parseMultiComponent(MultiComponent* mc);
+
+ /// Create a 3D vtkCell corresponding to a structural component's cell
+ /// @param cell: The PML Cell, created by the library pml
+ /// @return A pointor to the vtkCell structure.
+ /// @note thePoints must not be NULL before calling this method (we create the vtkCell using points references)
+ vtkSmartPointer<vtkCell> cellToVTK(Cell* cell);
+
+ /// Create a 3D vtkPolyVertex of a structural component which ONLY contains atoms ref
+ /// @param sc: The PML structural component object that only contains atoms references.
+ /// @return a pointor to the vtkCell structure.
+ /// @note this method may be removed as soon as we change the PML XSD schema.
+ /// @note thePoints must not be NULL before calling this method (we create the vtkPolyVertex using points references)
+ vtkSmartPointer<vtkPolyVertex> atomSCToVTK(StructuralComponent* sc);
+
+ ///@}
+
+ /// @name 3D structure element selection
+ ///@{
+
+ /// The vtkIdTypeArray for atom selection (contains all the id array that corresponds to a selected atom)
+ vtkSmartPointer<vtkIdTypeArray> selectedAtomIdArray;
+
+ /// The vtkSelection for atom selection
+ vtkSmartPointer<vtkSelection> selectedAtomSelection;
+
+ /// The association structural component <-> vtkIdTypeArray for Cells selection.
+ /// Structural component name is the key.
+ /// scCellIdArrayMap(sc->getName().c_str()) contains the id of all the cells selected in the StructuralComponent sc
+ QMap<QString, vtkSmartPointer<vtkIdTypeArray> > scCellIdArrayMap;
+
+ /// The association structural component <-> vtkSelection for Cells selection.
+ /// Structural component name is the key.
+ /// scCellSelectionMap(sc->getName().c_str()) manages the vtkSelection of the StructuralComponent sc
+ QMap<QString, vtkSmartPointer<vtkSelection> > scCellSelectionMap;
+
+ /// Create a new VTK selection pipeline (selection, extractor, mapper, actor) for a given SC
+ /// if it does not allready exists.
+ /// A VTK selection pipeline is needed to represent the given structural component
+ /// There is one VTK selection pipeline per SC.
+ /// @param sc the input structural component to create the vtk extract selection from.
+ void createCellSelectionVTKPipeline(const StructuralComponent* sc);
+
+ /// Create the VTK selection pipeline (selection, extractor, mapper, actor) needed to
+ /// represent the selection of atoms.
+ void createAtomSelectionVTKPipeline();
+ ///@}
+
+
+};
+
+// -------------------- Atom / VtkPoint Id Map --------------------
+inline vtkIdType PMLComponent::getPointId(const Atom *a) {
+ if (!a)
+ return 0;
+ std::AtomPointIdMapIterator result = atomPointIdMap.find(a);
+ return (result == atomPointIdMap.end()) ? 0 : (result->second);
+}
+
+
+#endif
+
+
diff --git a/modeling/components/pmlcomponent/PMLComponentAPI.h b/modeling/components/pmlcomponent/PMLComponentAPI.h
new file mode 100644
index 0000000..2509458
--- /dev/null
+++ b/modeling/components/pmlcomponent/PMLComponentAPI.h
@@ -0,0 +1,15 @@
+#if defined(_WIN32) // MSVC and mingw
+
+#ifdef COMPILE_PML_COMPONENT_API
+#define PML_COMPONENT_API __declspec(dllexport)
+#else
+#define PML_COMPONENT_API __declspec(dllimport)
+#endif // COMPILE_PML_COMPONENT_API
+
+#else // for all other platforms PML_COMPONENT_API is defined to be "nothing"
+
+#ifndef PML_COMPONENT_API
+#define PML_COMPONENT_API
+#endif // COMPILE_PML_COMPONENT_API
+
+#endif // MSVC and mingw
\ No newline at end of file
diff --git a/modeling/components/pmlcomponent/PMLComponentExtension.cpp b/modeling/components/pmlcomponent/PMLComponentExtension.cpp
new file mode 100644
index 0000000..da90b9b
--- /dev/null
+++ b/modeling/components/pmlcomponent/PMLComponentExtension.cpp
@@ -0,0 +1,202 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include "PMLComponentExtension.h"
+
+// CEP stuff
+#include <PMLComponent.h>
+
+//-- PML
+// need to be before "using namespace camitk"
+#include <pml/PhysicalModel.h>
+#include <pml/MultiComponent.h>
+
+// CamiTK stuff
+#include <Application.h>
+
+using namespace camitk;
+
+//-- vtk
+#include <vtkCell.h>
+
+// --------------- getName -------------------
+QString PMLComponentExtension::getName() const {
+ return "PML Component";
+}
+
+// --------------- getDescription -------------------
+QString PMLComponentExtension::getDescription() const {
+ return "<b>New PML COMPONENT!</b>";// Manage Physical Model <em>.pml</em> files in <b>CamiTK</b>.<br/>CamiTK was initially mainly developed to support this format. Lots of things are possible with a physical model!";
+}
+
+// --------------- getFileExtensions -------------------
+QStringList PMLComponentExtension::getFileExtensions() const {
+ QStringList ext;
+ ext << "pml";
+ return ext;
+}
+
+// --------------- open -------------------
+camitk::Component * PMLComponentExtension::open(const QString & fileName) throw(AbortException) {
+
+ Application::showStatusBarMessage("Loading " + fileName + "...");
+
+ // instanciate the component
+ PMLComponent * pmlComponent = new PMLComponent(fileName);
+
+ // reset the progress bar
+ Application::resetProgressBar();
+
+ return pmlComponent;
+}
+
+// --------------- save -------------------
+bool PMLComponentExtension::save(camitk::Component * component) const {
+ PMLComponent * comp = dynamic_cast<PMLComponent *>(component);
+
+ if (comp) {
+ // easy!
+ // Just generate an ostream from the filename and then xmlPrint pop
+ std::ofstream outputFile(comp->getFileName().toStdString().c_str());
+ comp->getPhysicalModel()->xmlPrint(outputFile);
+ outputFile.close();
+ comp->setModified(false);
+ return true;
+ } else {
+ // save from generic MeshComponent
+ MeshComponent * meshComp = dynamic_cast<MeshComponent *>(component);
+
+ if (meshComp && meshComp->getPointSet()->GetNumberOfPoints() > 0) {
+ //-- create a new physical model
+ PhysicalModel * newPM = new PhysicalModel();
+
+ // extract the atoms from the Geometry
+ vtkSmartPointer<vtkPoints> thePoints = vtkSmartPointer<vtkPoints>::New();
+ thePoints->DeepCopy(meshComp->getPointSet()->GetPoints());
+
+ //-- create the structural components for the atoms
+ StructuralComponent * theAtoms = new StructuralComponent(newPM, "All Atoms");
+ double pos[3];
+
+ // create the atom structures
+ for (int i = 0; i < thePoints->GetNumberOfPoints(); i++) {
+ thePoints->GetPoint(i, pos);
+ theAtoms->addStructure(new Atom(newPM, pos), false);
+ }
+
+ // set the atom sc
+ newPM->setAtoms(theAtoms);
+
+ //-- create the unique structural components containing all the vtkCell, this is an exclusive component
+ unsigned int nrOfCells = meshComp->getPointSet()->GetNumberOfCells();
+ StructuralComponent * sc = new StructuralComponent(newPM, "All Cells");
+
+ // fill in this new structural component with all vtk cells
+ for (vtkIdType i = 0; i < (vtkIdType) nrOfCells; i++) {
+ // create a cell for each cell
+ vtkCell * theCell = meshComp->getPointSet()->GetCell(i);
+
+ // translate cell type
+ StructureProperties::GeometricType cellType;
+
+ switch (theCell->GetCellType()) {
+ case VTK_TETRA:
+ cellType = StructureProperties::TETRAHEDRON;
+ break;
+
+ case VTK_HEXAHEDRON:
+ cellType = StructureProperties::HEXAHEDRON;
+ break;
+
+ case VTK_WEDGE:
+ cellType = StructureProperties::WEDGE;
+ break;
+
+ case VTK_PYRAMID:
+ cellType = StructureProperties::PYRAMID;
+ break;
+
+ case VTK_LINE:
+ cellType = StructureProperties::LINE;
+ break;
+
+ case VTK_POLY_LINE:
+ cellType = StructureProperties::POLY_LINE;
+ break;
+
+ case VTK_POLY_VERTEX:
+ cellType = StructureProperties::POLY_VERTEX;
+ break;
+
+ case VTK_TRIANGLE:
+ cellType = StructureProperties::TRIANGLE;
+ break;
+
+ case VTK_QUAD:
+ cellType = StructureProperties::QUAD;
+ break;
+
+ default:
+ cellType = StructureProperties::INVALID;
+ break;
+ }
+
+ // create the corresponding PML cell
+ Cell * c = new Cell(newPM, cellType);
+
+ // fill-in the cell structures (atoms)
+ for (int i = 0; i < theCell->GetNumberOfPoints(); i++) {
+ // get the corresponding atom
+ Atom * a = newPM->getAtom(theCell->GetPointId(i)); // dynamic_cast<Atom *>(theAtoms->getStructure(theCell->GetPointId(i)));
+ // set the corresponding atom as a structure composing the cell
+ c->addStructure(a, false);
+ }
+
+ // insert the cell in the structure
+ sc->addStructure(c, false);
+ }
+
+ // create the exclusive multi-component
+ MultiComponent * exclusiveComponents = new MultiComponent(newPM);
+
+ // insert all the cells (i.e. the sc component)
+ exclusiveComponents->addSubComponent(sc);
+ exclusiveComponents->setName("Exclusive Components");
+
+ // insert this exclusive component into the pm
+ newPM->setExclusiveComponents(exclusiveComponents);
+
+ // save it!
+ std::ofstream outputFile(meshComp->getFileName().toStdString().c_str());
+ newPM->xmlPrint(outputFile);
+ meshComp->setModified(false);
+ outputFile.close();
+ return true;
+ }
+ }
+
+ return false;
+
+}
+
diff --git a/modeling/components/pmlcomponent/PMLComponentExtension.h b/modeling/components/pmlcomponent/PMLComponentExtension.h
new file mode 100644
index 0000000..2fde720
--- /dev/null
+++ b/modeling/components/pmlcomponent/PMLComponentExtension.h
@@ -0,0 +1,71 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#ifndef PML_COMPONENT_EXTENSION_H
+#define PML_COMPONENT_EXTENSION_H
+
+// CamiTK stuff
+#include <MeshComponentExtension.h>
+
+// QT stuff
+#include <QObject>
+/**
+ * @ingroup group_cepmodeling_components_pml
+ *
+ * @brief
+ * This PML ComponentExtension allows you to manipulate physical model file ".pml".
+ * see http://www-timc.imag.fr/Emmanuel.Promayon/pml for more information on
+ * this type of documents.
+ *
+ **/
+class PMLComponentExtension : public camitk::MeshComponentExtension {
+ Q_OBJECT
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.modeling.component.pmlcomponent")
+
+public:
+ /// the constructor (does nothing really)
+ PMLComponentExtension() : MeshComponentExtension() {}
+
+ /// get the plugin name
+ virtual QString getName() const;
+
+ /// get the plugin description (can be html)
+ virtual QString getDescription() const;
+
+ /// get the list of managed extensions (each file with an extension in the list can be loaded by this Extension
+ virtual QStringList getFileExtensions() const;
+
+ /// get a new instance from data stored in a file (this is the most important method to redefine in your subclass)
+ virtual camitk::Component * open(const QString &) throw (camitk::AbortException);
+
+ /// save from or to PML
+ virtual bool save(camitk::Component* component) const;
+
+protected:
+ /// the destructor
+ virtual ~PMLComponentExtension() {};
+};
+
+#endif
diff --git a/modeling/components/pmlcomponent/physicalmodel_20x20.xpm b/modeling/components/pmlcomponent/physicalmodel_20x20.xpm
new file mode 100644
index 0000000..ff3deea
--- /dev/null
+++ b/modeling/components/pmlcomponent/physicalmodel_20x20.xpm
@@ -0,0 +1,211 @@
+/* XPM */
+static const char *physicalmodel_20x20[]={
+"20 20 188 2",
+"Qt c None",
+".g c #000000",
+"#V c #010101",
+".X c #020202",
+"a. c #030303",
+"#1 c #040404",
+"ab c #090909",
+".9 c #0a0a0a",
+"#. c #0d0d0d",
+"#k c #0e0e0e",
+"#c c #100e0e",
+".f c #101010",
+"#O c #111111",
+"a3 c #120b0b",
+"#U c #131211",
+".x c #131313",
+"#g c #18140f",
+"#s c #191919",
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diff --git a/modeling/components/pmlcomponent/testdata/compression-12.lml b/modeling/components/pmlcomponent/testdata/compression-12.lml
new file mode 100755
index 0000000..7e6ea71
--- /dev/null
+++ b/modeling/components/pmlcomponent/testdata/compression-12.lml
@@ -0,0 +1,44 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model load file -->
+<loads xmlns='http://www-timc.imag.fr/load'
+ xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'>
+
+
+<!-- translater les z- -->
+ <load xsi:type="Translation">
+ <appliedTo>648-728</appliedTo>
+ <valueEvent date="0" value="1"/>
+ <direction x="NULL" y="NULL" z="NULL"/>
+ <unit>mm</unit>
+ </load>
+
+
+<!-- fixer tous les z+ -->
+ <load xsi:type="Translation">
+ <appliedTo>0-80</appliedTo>
+ <valueEvent date="0" value="0"/>
+ <valueEvent date="10" value="10"/>
+ <direction x="0" y="0" z="1"/>
+ <unit>mm</unit>
+ </load>
+
+
+<!-- translater les y+
+ <load xsi:type="Translation">
+ <appliedTo>0-8,81-89,162-170,243-251,324-332,405-413,486-494,567-575,648-656</appliedTo>
+ <valueEvent date="0" value="0"/>
+ <direction x="0" y="0" z="0"/>
+ <unit>mm</unit>
+ </load>
+-->
+
+<!-- fixer tous les y-
+ <load xsi:type="Translation">
+ <appliedTo>72-80,153-161,234-242,315-323,396-404,477-485,558-566,639-647,720-728</appliedTo>
+ <valueEvent date="0" value="0"/>
+ <valueEvent date="10" value="4"/>
+ <direction x="0" y="-1" z="0"/>
+ <unit>mm</unit>
+ </load>
+-->
+</loads>
diff --git a/modeling/components/pmlcomponent/testdata/ctestdata/diaphragm.pml b/modeling/components/pmlcomponent/testdata/ctestdata/diaphragm.pml
new file mode 100644
index 0000000..a0f1349
--- /dev/null
+++ b/modeling/components/pmlcomponent/testdata/ctestdata/diaphragm.pml
@@ -0,0 +1,7345 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Diaphragm model" nrOfAtoms="283"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="782"
+ aboutPML="See Chabanas, M. and Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266; doi:10.1007/b98155"
+ comment="This diaphragm model comes from this study: Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. and Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748; doi:10.1007/s00330-004-2482-2"
+ globalProperty="This is an example of a property set on the physical model top level"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="Nodes">
+<nrOfStructures value="283"/>
+<atom>
+<atomProperties index="0" x="-52.5" y="141.491" z="-88" additionalProperties="OK"/>
+</atom>
+<atom>
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+</atom>
+<atom>
+<atomProperties index="2" x="37.5" y="145" z="-88"/>
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+</atom>
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+</atom>
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+<atom>
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diff --git a/modeling/components/pmlcomponent/testdata/ctestdata/truthcube.pml b/modeling/components/pmlcomponent/testdata/ctestdata/truthcube.pml
new file mode 100644
index 0000000..e42d7fd
--- /dev/null
+++ b/modeling/components/pmlcomponent/testdata/ctestdata/truthcube.pml
@@ -0,0 +1,24822 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="truthcube" nrOfAtoms="729"
+ nrOfExclusiveComponents="3"
+ nrOfInformativeComponents="2"
+ nrOfCells="1499"
+ comment=" This is a representation of the Truth cube. See: Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. and Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291 doi:10.1016/S1361-8415(03)00008-2"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
+<nrOfStructures value="729"/>
+<atom>
+<atomProperties index="0" x="-40" y="-37" z="-57"/>
+</atom>
+<atom>
+<atomProperties index="1" x="-30" y="-37" z="-57"/>
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+<atomProperties index="2" x="-20" y="-37" z="-57"/>
+</atom>
+<atom>
+<atomProperties index="3" x="-10" y="-37" z="-57"/>
+</atom>
+<atom>
+<atomProperties index="4" x="0" y="-37" z="-57"/>
+</atom>
+<atom>
+<atomProperties index="5" x="10" y="-37" z="-57"/>
+</atom>
+<atom>
+<atomProperties index="6" x="20" y="-37" z="-57"/>
+</atom>
+<atom>
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+</atom>
+<atom>
+<atomProperties index="8" x="40" y="-37" z="-57"/>
+</atom>
+<atom>
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+</atom>
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+</atom>
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+</atom>
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+</atom>
+<atom>
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+</atom>
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+</atom>
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+</atom>
+<atom>
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+</atom>
+<atom>
+<atomProperties index="18" x="-40" y="-17" z="-57"/>
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+</cell>
+</structuralComponent>
+</multiComponent>
+</exclusiveComponents>
+<!-- list of informative components : -->
+<informativeComponents>
+<multiComponent name="Informative Components">
+<structuralComponent name="mid slice coronal" mode="POINTS">
+<nrOfStructures value="49"/>
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+</physicalModel>
diff --git a/modeling/components/pmlcomponent/testdata/diaphragm.pml b/modeling/components/pmlcomponent/testdata/diaphragm.pml
new file mode 100644
index 0000000..a0f1349
--- /dev/null
+++ b/modeling/components/pmlcomponent/testdata/diaphragm.pml
@@ -0,0 +1,7345 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="Diaphragm model" nrOfAtoms="283"
+ nrOfExclusiveComponents="1"
+ nrOfInformativeComponents="2"
+ nrOfCells="782"
+ aboutPML="See Chabanas, M. and Promayon, E. Physical Model Language: Towards a Unified Representation for Continuous and Discrete Models International Symposium on Medical Simulation, Springer Verlag, 2004, 3078, 256-266; doi:10.1007/b98155"
+ comment="This diaphragm model comes from this study: Craighero, S.; Promayon, E.; Baconnier, P.; Lebas, J. F. and Coulomb, M. Dynamic Echo-Planar MR Imaging of the Diaphragm for a 3D Dynamic Analysis European Radiology, 2005, 15, 742-748; doi:10.1007/s00330-004-2482-2"
+ globalProperty="This is an example of a property set on the physical model top level"
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diff --git a/modeling/components/pmlcomponent/testdata/truthcube.pml b/modeling/components/pmlcomponent/testdata/truthcube.pml
new file mode 100644
index 0000000..e42d7fd
--- /dev/null
+++ b/modeling/components/pmlcomponent/testdata/truthcube.pml
@@ -0,0 +1,24822 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- physical model (PML) is a generic representation for 3D physical model.
+ PML supports not continous indexes and multiple non-exclusive labelling.
+ -->
+<physicalModel name="truthcube" nrOfAtoms="729"
+ nrOfExclusiveComponents="3"
+ nrOfInformativeComponents="2"
+ nrOfCells="1499"
+ comment=" This is a representation of the Truth cube. See: Kerdok, A. E.; Cotin, S. M.; Ottensmeyer, M. P.; Galea, A. M.; Howe, R. D. and Dawson, S. L. Truth Cube: Establishing Physical Standards for Soft Tissue Simulation Medical Image Analysis, 2003, 7, 283-291 doi:10.1016/S1361-8415(03)00008-2"
+>
+<!-- list of atoms: -->
+<atoms>
+<structuralComponent name="element list">
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+</structuralComponent>
+</multiComponent>
+</informativeComponents>
+</physicalModel>
diff --git a/modeling/libraries/CMakeLists.txt b/modeling/libraries/CMakeLists.txt
index f001413..6efd4a7 100644
--- a/modeling/libraries/CMakeLists.txt
+++ b/modeling/libraries/CMakeLists.txt
@@ -6,8 +6,10 @@
# CMakeLists.txt
# In your CMakeLists.txt, use the camitk_library() macro apropriately
-
# --- add every given library in dependencies order
+camitk_add_subdirectory(lmlschema)
camitk_add_subdirectory(lml)
+camitk_add_subdirectory(pmlschema)
camitk_add_subdirectory(pml)
+camitk_add_subdirectory(mmlschema)
camitk_add_subdirectory(mml)
diff --git a/modeling/libraries/lml/Acceleration.h b/modeling/libraries/lml/Acceleration.h
index d16643d..42203e0 100644
--- a/modeling/libraries/lml/Acceleration.h
+++ b/modeling/libraries/lml/Acceleration.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/AccelerationUnit.cpp b/modeling/libraries/lml/AccelerationUnit.cpp
index 844213f..8909a7e 100644
--- a/modeling/libraries/lml/AccelerationUnit.cpp
+++ b/modeling/libraries/lml/AccelerationUnit.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/AccelerationUnit.h b/modeling/libraries/lml/AccelerationUnit.h
index e8c8917..e854c2d 100644
--- a/modeling/libraries/lml/AccelerationUnit.h
+++ b/modeling/libraries/lml/AccelerationUnit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/CMakeLists.txt b/modeling/libraries/lml/CMakeLists.txt
index 0d3c528..9c51d69 100644
--- a/modeling/libraries/lml/CMakeLists.txt
+++ b/modeling/libraries/lml/CMakeLists.txt
@@ -1,7 +1,5 @@
project(LML)
-cmake_minimum_required(VERSION 2.6)
-
# Is this tool is compiled inside or outside CamiTK (as a standalone)?
if (NOT CEP_NAME STREQUAL "modeling")
# if this tool is compiled independently from CamiTK
@@ -30,8 +28,7 @@ set( HEADERS
Acceleration.h
AccelerationUnit.h
Unit.h
- ValueEvent.h
- XMLLoads.h
+ ValueEvent.h
)
set( SRCS
@@ -45,24 +42,19 @@ set( SRCS
Translation.cpp
TranslationUnit.cpp
AccelerationUnit.cpp
- ValueEvent.cpp
- XMLLoads.cpp
+ ValueEvent.cpp
${HEADERS}
)
camitk_library(STATIC
SOURCES ${SRCS}
- NEEDS_LIBXML2
+ NEEDS_XSD
+ NEEDS_CEP_LIBRARIES lmlschema
HEADERS_TO_INSTALL ${HEADERS}
CEP_NAME CEP_MODELING
- DESCRIPTION "Tools to describe a biomechanical model."
+ DESCRIPTION "Tools to describe loads and boundary condition of biomechanical simulation."
)
-#---------
-# testing
-#---------
-add_subdirectory(test)
-
#-------------------
# api documentation
#-------------------
diff --git a/modeling/libraries/lml/COPYING b/modeling/libraries/lml/COPYING
deleted file mode 100644
index 5b6e7c6..0000000
--- a/modeling/libraries/lml/COPYING
+++ /dev/null
@@ -1,340 +0,0 @@
- GNU GENERAL PUBLIC LICENSE
- Version 2, June 1991
-
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.
- 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The licenses for most software are designed to take away your
-freedom to share and change it. By contrast, the GNU General Public
-License is intended to guarantee your freedom to share and change free
-software--to make sure the software is free for all its users. This
-General Public License applies to most of the Free Software
-Foundation's software and to any other program whose authors commit to
-using it. (Some other Free Software Foundation software is covered by
-the GNU Library General Public License instead.) You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
-this service if you wish), that you receive source code or can get it
-if you want it, that you can change the software or use pieces of it
-in new free programs; and that you know you can do these things.
-
- To protect your rights, we need to make restrictions that forbid
-anyone to deny you these rights or to ask you to surrender the rights.
-These restrictions translate to certain responsibilities for you if you
-distribute copies of the software, or if you modify it.
-
- For example, if you distribute copies of such a program, whether
-gratis or for a fee, you must give the recipients all the rights that
-you have. You must make sure that they, too, receive or can get the
-source code. And you must show them these terms so they know their
-rights.
-
- We protect your rights with two steps: (1) copyright the software, and
-(2) offer you this license which gives you legal permission to copy,
-distribute and/or modify the software.
-
- Also, for each author's protection and ours, we want to make certain
-that everyone understands that there is no warranty for this free
-software. If the software is modified by someone else and passed on, we
-want its recipients to know that what they have is not the original, so
-that any problems introduced by others will not reflect on the original
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-
- Finally, any free program is threatened constantly by software
-patents. We wish to avoid the danger that redistributors of a free
-program will individually obtain patent licenses, in effect making the
-program proprietary. To prevent this, we have made it clear that any
-patent must be licensed for everyone's free use or not licensed at all.
-
- The precise terms and conditions for copying, distribution and
-modification follow.
-
- GNU GENERAL PUBLIC LICENSE
- TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
-
- 0. This License applies to any program or other work which contains
-a notice placed by the copyright holder saying it may be distributed
-under the terms of this General Public License. The "Program", below,
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-the term "modification".) Each licensee is addressed as "you".
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- 5. You are not required to accept this License, since you have not
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-may not distribute the Program at all. For example, if a patent
-license would not permit royalty-free redistribution of the Program by
-all those who receive copies directly or indirectly through you, then
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-integrity of the free software distribution system, which is
-implemented by public license practices. Many people have made
-generous contributions to the wide range of software distributed
-through that system in reliance on consistent application of that
-system; it is up to the author/donor to decide if he or she is willing
-to distribute software through any other system and a licensee cannot
-impose that choice.
-
-This section is intended to make thoroughly clear what is believed to
-be a consequence of the rest of this License.
-
- 8. If the distribution and/or use of the Program is restricted in
-certain countries either by patents or by copyrighted interfaces, the
-original copyright holder who places the Program under this License
-may add an explicit geographical distribution limitation excluding
-those countries, so that distribution is permitted only in or among
-countries not thus excluded. In such case, this License incorporates
-the limitation as if written in the body of this License.
-
- 9. The Free Software Foundation may publish revised and/or new versions
-of the General Public License from time to time. Such new versions will
-be similar in spirit to the present version, but may differ in detail to
-address new problems or concerns.
-
-Each version is given a distinguishing version number. If the Program
-specifies a version number of this License which applies to it and "any
-later version", you have the option of following the terms and conditions
-either of that version or of any later version published by the Free
-Software Foundation. If the Program does not specify a version number of
-this License, you may choose any version ever published by the Free Software
-Foundation.
-
- 10. If you wish to incorporate parts of the Program into other free
-programs whose distribution conditions are different, write to the author
-to ask for permission. For software which is copyrighted by the Free
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-make exceptions for this. Our decision will be guided by the two goals
-of preserving the free status of all derivatives of our free software and
-of promoting the sharing and reuse of software generally.
-
- NO WARRANTY
-
- 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
-OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
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-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE
-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
-REPAIR OR CORRECTION.
-
- 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
-OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
-TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
-PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
-POSSIBILITY OF SUCH DAMAGES.
-
- END OF TERMS AND CONDITIONS
-
- How to Apply These Terms to Your New Programs
-
- If you develop a new program, and you want it to be of the greatest
-possible use to the public, the best way to achieve this is to make it
-free software which everyone can redistribute and change under these terms.
-
- To do so, attach the following notices to the program. It is safest
-to attach them to the start of each source file to most effectively
-convey the exclusion of warranty; and each file should have at least
-the "copyright" line and a pointer to where the full notice is found.
-
- <one line to give the program's name and a brief idea of what it does.>
- Copyright (C) <year> <name of author>
-
- This program is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program; if not, write to the Free Software
- Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-
-
-Also add information on how to contact you by electronic and paper mail.
-
-If the program is interactive, make it output a short notice like this
-when it starts in an interactive mode:
-
- Gnomovision version 69, Copyright (C) year name of author
- Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
- This is free software, and you are welcome to redistribute it
- under certain conditions; type `show c' for details.
-
-The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License. Of course, the commands you use may
-be called something other than `show w' and `show c'; they could even be
-mouse-clicks or menu items--whatever suits your program.
-
-You should also get your employer (if you work as a programmer) or your
-school, if any, to sign a "copyright disclaimer" for the program, if
-necessary. Here is a sample; alter the names:
-
- Yoyodyne, Inc., hereby disclaims all copyright interest in the program
- `Gnomovision' (which makes passes at compilers) written by James Hacker.
-
- <signature of Ty Coon>, 1 April 1989
- Ty Coon, President of Vice
-
-This General Public License does not permit incorporating your program into
-proprietary programs. If your program is a subroutine library, you may
-consider it more useful to permit linking proprietary applications with the
-library. If this is what you want to do, use the GNU Library General
-Public License instead of this License.
diff --git a/modeling/libraries/lml/Direction.h b/modeling/libraries/lml/Direction.h
index acca900..f63485f 100644
--- a/modeling/libraries/lml/Direction.h
+++ b/modeling/libraries/lml/Direction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#define DIRECTION_H
#include <iostream>
-#include "libxml/xmlIO.h"
+
/**
* @ingroup group_cepmodeling_libraries_lml
*
diff --git a/modeling/libraries/lml/Force.cpp b/modeling/libraries/lml/Force.cpp
index 6c376eb..ce2871a 100644
--- a/modeling/libraries/lml/Force.cpp
+++ b/modeling/libraries/lml/Force.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Force.h b/modeling/libraries/lml/Force.h
index 052d135..cd72458 100644
--- a/modeling/libraries/lml/Force.h
+++ b/modeling/libraries/lml/Force.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/ForceUnit.cpp b/modeling/libraries/lml/ForceUnit.cpp
index b046ff8..57729c2 100644
--- a/modeling/libraries/lml/ForceUnit.cpp
+++ b/modeling/libraries/lml/ForceUnit.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/ForceUnit.h b/modeling/libraries/lml/ForceUnit.h
index 7ceb56f..18aa40f 100644
--- a/modeling/libraries/lml/ForceUnit.h
+++ b/modeling/libraries/lml/ForceUnit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/INSTALL b/modeling/libraries/lml/INSTALL
deleted file mode 100644
index 8718600..0000000
--- a/modeling/libraries/lml/INSTALL
+++ /dev/null
@@ -1,15 +0,0 @@
-Installation instructions
--------------------------
-
-If you are compiling the LML library in the camiTK framework, please make
-sure that this directory is inside the camiTK directory.
-
-If you are compiling the LML library as a standalone, you have to
-use camiTK_DIR to be the installation directory, i.e. the
-directory camiTK_DIR have to have the following subdirectories:
-- $camiTK_DIR/lib where the lib will be created
-- $camiTK_DIR/bin where any binaries will be created
-- $camiTK_DIR/include where the include file will be copied
- when make install is called.
-
-If camiTK_DIR is not defined, it is automatically set to the build dir.
\ No newline at end of file
diff --git a/modeling/libraries/lml/Load.cpp b/modeling/libraries/lml/Load.cpp
index c7e5163..5e6991a 100644
--- a/modeling/libraries/lml/Load.cpp
+++ b/modeling/libraries/lml/Load.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Load.h b/modeling/libraries/lml/Load.h
index 3defd2a..8c212ab 100644
--- a/modeling/libraries/lml/Load.h
+++ b/modeling/libraries/lml/Load.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,7 +32,7 @@
#include "Unit.h"
#include <algorithm>
-#include "libxml/xmlIO.h"
+
/**
* @ingroup group_cepmodeling_libraries_lml
*
diff --git a/modeling/libraries/lml/Loads.cpp b/modeling/libraries/lml/Loads.cpp
index 2d775f6..efb4e75 100644
--- a/modeling/libraries/lml/Loads.cpp
+++ b/modeling/libraries/lml/Loads.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,13 +24,31 @@
****************************************************************************/
#include "Loads.h"
+
#include "ValueEvent.h"
-#include "XMLLoads.h"
+#include "Translation.h"
+#include "ForceUnit.h"
+#include "RotationUnit.h"
+#include "PressureUnit.h"
+#include "AccelerationUnit.h"
#include "LoadsVersion.h"
+#include "Direction.h"
+
+// lmlschema stuffs
+#include <Loads.hxx>
+#include <Load.hxx>
+#include <Force.hxx>
+#include <Translation.hxx>
+#include <Rotation.hxx>
+#include <Pressure.hxx>
+#include <ValueEvent.hxx>
+#include <Acceleration.hxx>
+#include <iostream>
+using namespace std;
// ------------------ constructor ------------------
-Loads::Loads(std::string fileName) {
- XMLLoads xmlReader(fileName, this);
+Loads::Loads (std::string fileName) {
+ xmlRead (fileName);
}
// ------------------ destructor ------------------
@@ -41,15 +59,108 @@ Loads::~Loads() {
// ... so here it is...
// clear all elements from the array
- for(std::vector<Load*>::iterator it=loads.begin(); it!=loads.end(); it++)
+ for (std::vector<Load*>::iterator it=loads.begin(); it!=loads.end(); it++)
delete *it; // free the element from memory
// finally, clear all elements from the array
loads.clear();
}
+// ------------------ xmlRead ------------------
+void Loads::xmlRead (string filename) {
+ // Use XSD with the lmlschema library to read the loads described in the xml file.
+ auto_ptr<load::Loads> xmlloads = load::loads (filename, xml_schema::flags::dont_validate);
+
+
+ // Construct the Loads object by iterating over the lmlschema library objects
+ load::Loads::load_sequence ls = xmlloads->load();
+ for (load::Loads::load_iterator li = ls.begin(); li != ls.end(); ++li) {
+ Load* l;
+ load::Load* xmlload = & (*li);
+
+ // get the load type and unit
+ if (load::Translation* xml_t = dynamic_cast<load::Translation*> (xmlload)) {
+ l = Load::LoadFactory ("Translation");
+ string unit = xml_t->unit().data();
+ if (unit.compare ("m") == 0)
+ l->setUnit (TranslationUnit::M());
+ else if (unit.compare ("mm") == 0)
+ l->setUnit (TranslationUnit::MM());
+ else if (unit.compare ("microm") == 0)
+ l->setUnit (TranslationUnit::MICRO_M());
+ else if (unit.compare ("nm") == 0)
+ l->setUnit (TranslationUnit::NM());
+
+ } else if (load::Force* xml_f = dynamic_cast<load::Force*> (xmlload)) {
+ l = Load::LoadFactory ("Force");
+ string unit = xml_f->unit().data();
+ if (unit.compare ("N") == 0)
+ l->setUnit (ForceUnit::N());
+ else if (unit.compare ("kN") == 0)
+ l->setUnit (ForceUnit::KN());
+ else if (unit.compare ("pN") == 0)
+ l->setUnit (ForceUnit::PN());
+
+ } else if (load::Rotation* xml_r = dynamic_cast<load::Rotation*> (xmlload)) {
+ l = Load::LoadFactory ("Rotation");
+ string unit = xml_r->unit().data();
+ if (unit.compare ("radians") == 0)
+ l->setUnit (RotationUnit::RAD());
+ else if (unit.compare ("degrees") == 0)
+ l->setUnit (RotationUnit::DEG());
+
+ } else if (load::Pressure* xml_p = dynamic_cast<load::Pressure*> (xmlload)) {
+ l = Load::LoadFactory ("Pressure");
+ string unit = xml_p->unit().data();
+ if (unit.compare ("Pa") == 0)
+ l->setUnit (PressureUnit::PA());
+ if (unit.compare ("kPa") == 0)
+ l->setUnit (PressureUnit::KPA());
+ if (unit.compare ("mmHg") == 0)
+ l->setUnit (PressureUnit::MMHG());
+
+ } else if (load::Acceleration* xml_a = dynamic_cast<load::Acceleration*> (xmlload)) {
+ l = Load::LoadFactory ("Acceleration");
+ string unit = xml_a->unit().data();
+ if (unit.compare ("m/s^2") == 0)
+ l->setUnit (AccelerationUnit::MSm2());
+ if (unit.compare ("cm/s^2") == 0)
+ l->setUnit (AccelerationUnit::CMSm2());
+ if (unit.compare ("mm/s^2") == 0)
+ l->setUnit (AccelerationUnit::MMSm2());
+
+ }
+
+ if (l) {
+ // direction
+ Direction direction = Direction();
+ if (xmlload->direction().toward().present())
+ direction.setToward (xmlload->direction().toward().get());
+ if (xmlload->direction().x().present())
+ direction.setX (atof (xmlload->direction().x().get().c_str()));
+ if (xmlload->direction().y().present())
+ direction.setY (atof (xmlload->direction().y().get().c_str()));
+ if (xmlload->direction().z().present())
+ direction.setZ (atof (xmlload->direction().z().get().c_str()));
+ l->setDirection (direction);
+
+ // target
+ l->addTarget (xmlload->appliedTo().data());
+
+ // value event
+ load::Load::valueEvent_sequence ves = xmlload->valueEvent();
+ for (load::Load::valueEvent_iterator vei = ves.begin(); vei != ves.end(); vei++) {
+ load::Load::valueEvent_type ve = *vei;
+ l->addEvent (new ValueEvent (ve.value(), ve.date()));
+ }
+
+ addLoad (l);
+ }
+ }
+}
+
// ------------------ xmlPrint ------------------
/// print the prolog of the xml file
-void Loads::xmlPrint(std::ostream & o) const {
+void Loads::xmlPrint (std::ostream & o) const {
o << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" << std::endl;
o << "<!-- physical model load file -->" << std::endl;
o << "<loads xmlns='http://www-timc.imag.fr/load'" << std::endl;
@@ -58,8 +169,8 @@ void Loads::xmlPrint(std::ostream & o) const {
unsigned int i;
Load * currentL;
for (i=0; i<numberOfLoads(); i++) {
- currentL = getLoad(i);
- currentL->xmlPrint(o); // o << (*currentL) doesn't work !!!;
+ currentL = getLoad (i);
+ currentL->xmlPrint (o); // o << (*currentL) doesn't work !!!;
o << std::endl;
}
@@ -68,16 +179,16 @@ void Loads::xmlPrint(std::ostream & o) const {
// ------------------ ansysPrint ------------------
// Print an ansys translation of the load list (not everything is implemented)
-void Loads::ansysPrint(std::ostream & o) const {
+void Loads::ansysPrint (std::ostream & o) const {
o << "! -------------------------------------------- " << std::endl;
o << "! translated from an physical model load file " << std::endl;
o << "! -------------------------------------------- " << std::endl << std::endl;
unsigned int i;
Load * currentL;
for (i=0; i<numberOfLoads(); i++) {
- currentL = getLoad(i);
+ currentL = getLoad (i);
o << "! -- Load #" << i << " (" << currentL->getType() << ")" << std::endl;
- currentL->ansysPrint(o);
+ currentL->ansysPrint (o);
o << std::endl;
}
@@ -96,7 +207,7 @@ std::ostream & operator << (std::ostream & o , const Loads l) {
unsigned int i;
Load * currentL;
for (i=0; i<l.numberOfLoads(); i++) {
- currentL = l.getLoad(i);
+ currentL = l.getLoad (i);
o << (* currentL) << std::endl;
}
@@ -106,12 +217,12 @@ std::ostream & operator << (std::ostream & o , const Loads l) {
}
// ------------------ addLoad ------------------
-void Loads::addLoad(Load *ld) {
- loads.push_back(ld);
+void Loads::addLoad (Load *ld) {
+ loads.push_back (ld);
}
// ------------------ getLoad ------------------
-Load * Loads::getLoad(const unsigned int i) const {
+Load * Loads::getLoad (const unsigned int i) const {
if (i<loads.size())
return loads[i];
else
@@ -124,10 +235,10 @@ unsigned int Loads::numberOfLoads() const {
}
// ------------------ deleteLoad ------------------
-void Loads::deleteLoad(const unsigned int index) {
+void Loads::deleteLoad (const unsigned int index) {
std::vector <Load *>::iterator it;
- it = loads.begin()+index;
- loads.erase(it);
+ it = loads.begin() +index;
+ loads.erase (it);
}
// ------------------ getFirstEventDate ------------------
@@ -140,8 +251,8 @@ double Loads::getFirstEventDate() {
for (unsigned int i=0; i<loads.size(); i++) {
// as events are sorted by date, test only the first event
// of each load
- ev = loads[i]->getValueEvent(0);
- if (ev && ((foundOne && ev->getDate()<dateMin) || !foundOne)) {
+ ev = loads[i]->getValueEvent (0);
+ if (ev && ( (foundOne && ev->getDate() <dateMin) || !foundOne)) {
dateMin = ev->getDate();
foundOne=true;
}
@@ -162,8 +273,8 @@ double Loads::getLastEventDate() {
for (unsigned int i=0; i<loads.size(); i++) {
// as events are sorted by date, test only the last event
// of each load
- ev = loads[i]->getValueEvent(loads[i]->numberOfValueEvents()-1);
- if (ev && ev->getDate()>dateMax)
+ ev = loads[i]->getValueEvent (loads[i]->numberOfValueEvents()-1);
+ if (ev && ev->getDate() >dateMax)
dateMax = ev->getDate();
}
diff --git a/modeling/libraries/lml/Loads.h b/modeling/libraries/lml/Loads.h
index 9a99df8..e8c74a4 100644
--- a/modeling/libraries/lml/Loads.h
+++ b/modeling/libraries/lml/Loads.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,11 +26,12 @@
#ifndef LOADS_H
#define LOADS_H
-class Load;
#include "Load.h"
#include "ValueEvent.h"
#include "Direction.h"
+#include <vector>
+
/**
* @ingroup group_cepmodeling_libraries_lml
*
@@ -96,6 +97,10 @@ public:
*/
friend std::ostream & operator << (std::ostream &, const Loads);
+ /// read the input xml file using xsd and instanciate the loads
+ /// @param filename: the input lml file (xml).
+ void xmlRead(std::string filename);
+
/// Print to an ostream
void xmlPrint(std::ostream &) const;
diff --git a/modeling/libraries/lml/LoadsVersion.h.in b/modeling/libraries/lml/LoadsVersion.h.in
index b24000a..ad8370f 100644
--- a/modeling/libraries/lml/LoadsVersion.h.in
+++ b/modeling/libraries/lml/LoadsVersion.h.in
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Pressure.h b/modeling/libraries/lml/Pressure.h
index 04aed46..a885ca9 100644
--- a/modeling/libraries/lml/Pressure.h
+++ b/modeling/libraries/lml/Pressure.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/PressureUnit.cpp b/modeling/libraries/lml/PressureUnit.cpp
index b0e743b..c5bc159 100644
--- a/modeling/libraries/lml/PressureUnit.cpp
+++ b/modeling/libraries/lml/PressureUnit.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/PressureUnit.h b/modeling/libraries/lml/PressureUnit.h
index 0216b28..e2abf63 100644
--- a/modeling/libraries/lml/PressureUnit.h
+++ b/modeling/libraries/lml/PressureUnit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Rotation.h b/modeling/libraries/lml/Rotation.h
index 93f0d33..b6fd92e 100644
--- a/modeling/libraries/lml/Rotation.h
+++ b/modeling/libraries/lml/Rotation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/RotationUnit.cpp b/modeling/libraries/lml/RotationUnit.cpp
index 5601902..65fceac 100644
--- a/modeling/libraries/lml/RotationUnit.cpp
+++ b/modeling/libraries/lml/RotationUnit.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/RotationUnit.h b/modeling/libraries/lml/RotationUnit.h
index ec1a406..c5faab1 100644
--- a/modeling/libraries/lml/RotationUnit.h
+++ b/modeling/libraries/lml/RotationUnit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/TargetList.cpp b/modeling/libraries/lml/TargetList.cpp
index 44ca917..cff3e76 100644
--- a/modeling/libraries/lml/TargetList.cpp
+++ b/modeling/libraries/lml/TargetList.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/TargetList.h b/modeling/libraries/lml/TargetList.h
index 0d3fde9..e9226f8 100644
--- a/modeling/libraries/lml/TargetList.h
+++ b/modeling/libraries/lml/TargetList.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <vector>
#include <string>
-#include "libxml/xmlIO.h"
+
/**
* @ingroup group_cepmodeling_libraries_lml
*
diff --git a/modeling/libraries/lml/Translation.cpp b/modeling/libraries/lml/Translation.cpp
index fad482e..aebc962 100644
--- a/modeling/libraries/lml/Translation.cpp
+++ b/modeling/libraries/lml/Translation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Translation.h b/modeling/libraries/lml/Translation.h
index 00333bf..d59aa94 100644
--- a/modeling/libraries/lml/Translation.h
+++ b/modeling/libraries/lml/Translation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/TranslationUnit.cpp b/modeling/libraries/lml/TranslationUnit.cpp
index ac86eac..f1cb963 100644
--- a/modeling/libraries/lml/TranslationUnit.cpp
+++ b/modeling/libraries/lml/TranslationUnit.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/TranslationUnit.h b/modeling/libraries/lml/TranslationUnit.h
index a7b0f64..302f3e6 100644
--- a/modeling/libraries/lml/TranslationUnit.h
+++ b/modeling/libraries/lml/TranslationUnit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/Unit.h b/modeling/libraries/lml/Unit.h
index de69f7d..7d328a4 100644
--- a/modeling/libraries/lml/Unit.h
+++ b/modeling/libraries/lml/Unit.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#define UNIT_H
#include <string>
-#include "libxml/xmlIO.h"
+
class Unit;
/**
diff --git a/modeling/libraries/lml/ValueEvent.cpp b/modeling/libraries/lml/ValueEvent.cpp
index 58c210a..82fb4aa 100644
--- a/modeling/libraries/lml/ValueEvent.cpp
+++ b/modeling/libraries/lml/ValueEvent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/ValueEvent.h b/modeling/libraries/lml/ValueEvent.h
index 6dad0c1..4491d06 100644
--- a/modeling/libraries/lml/ValueEvent.h
+++ b/modeling/libraries/lml/ValueEvent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#define VALUEEVENT_H
#include <iostream>
-#include "libxml/xmlIO.h"
+
/**
* @ingroup group_cepmodeling_libraries_lml
*
diff --git a/modeling/libraries/lml/XMLLoads.cpp b/modeling/libraries/lml/XMLLoads.cpp
deleted file mode 100644
index 7d554f6..0000000
--- a/modeling/libraries/lml/XMLLoads.cpp
+++ /dev/null
@@ -1,312 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// XML
-/*#include <xercesc/util/PlatformUtils.hpp>
-#include <xercesc/util/TransService.hpp>
-#include <xercesc/sax2/XMLReaderFactory.hpp>
-#include <xercesc/sax2/SAX2XMLReader.hpp>
-*/
-
-
-#include "XMLLoads.h"
-#include <stdexcept>
-
-#include "Translation.h"
-#include "TranslationUnit.h"
-#include "Force.h"
-#include "ForceUnit.h"
-#include "Pressure.h"
-#include "PressureUnit.h"
-#include "Rotation.h"
-#include "RotationUnit.h"
-#include "Acceleration.h"
-#include "AccelerationUnit.h"
-
-//---------------------- constructor --------------------
-XMLLoads::XMLLoads() {
- l = NULL;
-}
-
-XMLLoads::XMLLoads(std::string fileName) : l(NULL) {
- xmlRead(fileName);
-}
-
-XMLLoads::XMLLoads(std::string fileName, Loads * allLoads) : l(allLoads) {
- xmlRead(fileName);
-}
-
-//---------------------- destructor --------------------
-XMLLoads::~XMLLoads() {
-}
-
-//---------------------- getLoads --------------------
-Loads * XMLLoads::getLoads() {
- return l;
-}
-
-//---------------------- addLoad --------------------
-void XMLLoads::addLoad(Load *load) {
- if (!l)
- l = new Loads(); // create empty list
-
- l->addLoad(load);
-}
-
-//---------------------- xmlRead --------------------
-void XMLLoads::xmlRead(std::string fileName) {
-
- xmlFile = fileName.c_str();
-
- // Set the locale to C for using dot as decimal point dispite locale
- // Set utf8 for output to enforce using utf8 strings.
- char * statusOk = setlocale(LC_CTYPE, "C.UTF-8");
-
- if (statusOk!=NULL)
- statusOk = setlocale(LC_NUMERIC, "C.UTF-8");
-
- if (statusOk!=NULL)
- statusOk = setlocale(LC_TIME, "C.UTF-8");
-
- // french is: "fr_FR.UTF8"
- if (statusOk==NULL) {
- std::cerr << "Could not set the locale to C. This is mandatory to enforce using dot as decimal separator (platform independency)." << std::endl;
- std::cerr << "This can cause a lot of trouble for XML I/O... Beware of decimal dots..." << std::endl;
- }
-
- // the resulting document tree
- xmlDocPtr doc;
- //the pointer to the root node of the document
- xmlNodePtr root;
-
- doc = xmlParseFile(xmlFile);
-
- if (doc == NULL) {
- std::cerr << "Failed to open " << xmlFile << std::endl;
- return ;
- }
-
- root = xmlDocGetRootElement(doc);
-
- if (root == NULL) {
- std::cerr << "empty document" << std::endl;
- xmlFreeDoc(doc);
- return ;
- }
-
- //read the xml tree root, verify if it is a loads elemnt
- if (xmlStrcmp(root->name, (const xmlChar*)"loads")) {
- std::cerr << "failed to read the xml tree" << std::endl;
- xmlFreeDoc(doc);
- return ;
- }
-
- //parse the rest of the xml tree
- for (xmlNodePtr child = root->xmlChildrenNode; child != NULL; child = child->next) {
- if (!xmlStrcmp(child->name, (const xmlChar*)"load"))
- if (!parseElement(child))
- std::cerr << "failed to read xml element" << std::endl;
- }
-
- //free the xml
- xmlFreeDoc(doc);
-
- xmlCleanupParser();
-
- xmlMemoryDump();
-
-}
-
-// ------------------ parse Element ------------------
-bool XMLLoads::parseElement(xmlNodePtr elem) {
- Load * currentL;
- //get the type of load
- xmlChar *ptype = xmlGetProp(elem, (const xmlChar*) "type");
-
- if (ptype) {
- //create a new instance switch the type
- if (!xmlStrcmp(ptype, (const xmlChar*)"Translation"))
- currentL = new Translation();
- else if (!xmlStrcmp(ptype, (const xmlChar*)"Rotation"))
- currentL = new Rotation();
- else if (!xmlStrcmp(ptype, (const xmlChar*)"Force"))
- currentL = new Force();
- else if (!xmlStrcmp(ptype, (const xmlChar*)"Pressure"))
- currentL = new Pressure();
- else if(!xmlStrcmp(ptype, (const xmlChar*)"Acceleration"))
- currentL = new Acceleration();
- else
- return false;
-
- //parse th load children to get its properties
- for (xmlNodePtr child = elem->xmlChildrenNode; child != NULL; child = child->next) {
- if (!xmlStrcmp(child->name, (const xmlChar*)"appliedTo"))
- readLoadAppliedTo(child, currentL);
-
- if (!xmlStrcmp(child->name, (const xmlChar*)"valueEvent"))
- readLoadValueEvent(child, currentL);
-
- if (!xmlStrcmp(child->name, (const xmlChar*)"direction"))
- readLoadDirection(child, currentL);
-
- if (!xmlStrcmp(child->name, (const xmlChar*)"unit"))
- readLoadUnit(child, currentL);
- }
-
- this->addLoad(currentL);
-
- xmlFree(ptype);
- return true;
- } else
- return false;
-}
-
-
-// ------------------ readLoadAppliedTo ------------------
-void XMLLoads::readLoadAppliedTo(xmlNodePtr elem, Load *currentLoad) {
- xmlChar * pData = xmlNodeGetContent(elem);
-
- if (pData)
- currentLoad->addTarget(std::string((char*)pData));
-
- xmlFree(pData);
-}
-
-// ------------------ readLoadValueEvent ------------------
-void XMLLoads::readLoadValueEvent(xmlNodePtr elem, Load *currentLoad) {
- double value = 0.0, date = 0.0;
-
- xmlChar * pDate = xmlGetProp(elem, (const xmlChar*)"date");
-
- if (pDate)
- date = atof((const char*)pDate);
-
- xmlChar * pValue = xmlGetProp(elem, (const xmlChar*)"value");
-
- if (pValue)
- value = atof((const char*)pValue);
-
- if (pDate && pValue)
- currentLoad->addEvent(new ValueEvent(value, date));
-
- xmlFree(pDate);
- xmlFree(pValue);
-}
-
-// ------------------ readLoadDirection ------------------
-void XMLLoads::readLoadDirection(xmlNodePtr elem, Load *currentLoad) {
- Direction dir;
-
- xmlChar * px = xmlGetProp(elem, (const xmlChar*)"x");
-
- if (px) {
- if (!xmlStrcmp(px, (const xmlChar*)"NULL"))
- dir.setNullX();
- else
- dir.setX(atof((char *) px));
- }
-
- xmlChar * py = xmlGetProp(elem, (const xmlChar*)"y");
-
- if (py) {
- if (!xmlStrcmp(py, (const xmlChar*)"NULL"))
- dir.setNullY();
- else
- dir.setY(atof((char *) py));
- }
-
- xmlChar * pz = xmlGetProp(elem, (const xmlChar*)"z");
-
- if (pz) {
- if (!xmlStrcmp(pz, (const xmlChar*)"NULL"))
- dir.setNullZ();
- else
- dir.setZ(atof((char *) pz));
- }
-
- if (px || py || pz)
- currentLoad->setDirection(dir);
-
- xmlFree(px);
- xmlFree(py);
- xmlFree(pz);
-}
-
-// ------------------ readLoadUnit ------------------
-void XMLLoads::readLoadUnit(xmlNodePtr elem, Load *currentLoad) {
- xmlChar * pData = xmlNodeGetContent(elem);
-
- if (currentLoad->getType() == "Translation") {
- //unit de type TranslationUnit
- if (!xmlStrcmp(pData, (const xmlChar*)"m")) {
- currentLoad->setUnit(TranslationUnit::M());
- }
- if (!xmlStrcmp(pData, (const xmlChar*)"mm")) {
- currentLoad->setUnit(TranslationUnit::MM());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"microm")) {
- currentLoad->setUnit(TranslationUnit::MICRO_M());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"nm")) {
- currentLoad->setUnit(TranslationUnit::NM());
- }
- } else if (currentLoad->getType() == "Force") {
- if (!xmlStrcmp(pData, (const xmlChar*)"N")) {
- currentLoad->setUnit(ForceUnit::N());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"kN")) {
- currentLoad->setUnit(ForceUnit::KN());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"pN")) {
- currentLoad->setUnit(ForceUnit::PN());
- }
- }
-
- else if (currentLoad->getType() == "Pressure") {
- if (!xmlStrcmp(pData, (const xmlChar*)"Pa")) {
- currentLoad->setUnit(PressureUnit::PA());
- }
- if (!xmlStrcmp(pData, (const xmlChar*)"kPa")) {
- currentLoad->setUnit(PressureUnit::KPA());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"mmHg")) {
- currentLoad->setUnit(PressureUnit::MMHG());
- }
- }
-
- else if (currentLoad->getType() == "Rotation") {
- if (!xmlStrcmp(pData, (const xmlChar*)"radians")) {
- currentLoad->setUnit(RotationUnit::RAD());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"degrees")) {
- currentLoad->setUnit(RotationUnit::DEG());
- }
-
- } else if (currentLoad->getType() == "Acceleration") {
- if (!xmlStrcmp(pData, (const xmlChar*)"m/s^2")) {
- currentLoad->setUnit(AccelerationUnit::MSm2());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"cm/s^2")) {
- currentLoad->setUnit(AccelerationUnit::CMSm2());
- } else if (!xmlStrcmp(pData, (const xmlChar*)"mm/s^2")) {
- currentLoad->setUnit(AccelerationUnit::MMSm2());
- }
- }
-
- xmlFree(pData);
-}
diff --git a/modeling/libraries/lml/XMLLoads.h b/modeling/libraries/lml/XMLLoads.h
deleted file mode 100644
index c88d654..0000000
--- a/modeling/libraries/lml/XMLLoads.h
+++ /dev/null
@@ -1,135 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef XMLLOADS_H
-#define XMLLOADS_H
-
-#include "Loads.h"
-
-#include <libxml/parser.h>
-#include <libxml/tree.h>
-
-/* old doc
-Usage example:
-<pre>
-// reading
-main() {
- XMLLoads data;
- data.xmlRead("toto.lml");
- Loads *l = data.getLoad();
- ...
- cout << l;
-}
-
-// writing
-main() {
- Loads *l= new Loads();
- Translation *t = new Translation();
- t->setUnit(..)
- ...
- cout << l;
-}
-</pre>
-*/
-/**
- * @ingroup group_cepmodeling_libraries_lml
- *
- * @deprecated
- * Please use now Loads(std::string) constructor...
- *
- * @brief
- * Allows one to read loads from an XML file (LML)/
- *
- *
- *
- **/
-class XMLLoads {
-public:
-
- /** create a list of loads from an LML file.
- * @param fileName the name of the lml file (xml)
- * @param allLoads the pointer to the Loads instance (to store all loads), if null a new one is instanciated
- */
- XMLLoads(std::string fileName, Loads* allLoads);
-
- /// create an empty list of loads
- XMLLoads();
-
- /// (deprecated) create a list of loads from an LML file (instanciate a new Loads class object)
- XMLLoads(std::string fileName);
-
- /// destructor (delete all loads)
- ~XMLLoads();
-
- /// get the list of loads
- Loads * getLoads();
-
- /// add a new load to the list (creates one if no loads yet)
- void addLoad(Load *);
-
- /** Read the loads from an LML file.
- * Uses libxml2.
- */
- void xmlRead(std::string);
-
-protected:
-
- /** Read a load xml element, from lml file
- * Uses xmlNodePtr from libxml2
- */
- bool parseElement(xmlNodePtr elem);
-
- /** Read a load AppliedTo property, from lml file
- * Uses xmlNodePtr from libxml2
- * AppliedTo contains the list of atoms on which the load is applied
- */
- void readLoadAppliedTo(xmlNodePtr elem, Load *currentLoad);
-
- /** Read a load Direction property, from lml file
- * Uses xmlNodePtr from libxml2
- * Direction contains a 3D vector
- */
- void readLoadDirection(xmlNodePtr elem, Load *currentLoad);
-
- /** Read a load valueEvent property, from lml file
- * Uses xmlNodePtr from libxml2
- * valueEvent contains a pair of date/value
- */
- void readLoadValueEvent(xmlNodePtr elem, Load *currentLoad);
-
- /** Read a load Unit property, from lml file
- * Uses xmlNodePtr from libxml2
- * Unit contains the unit value of the load
- */
- void readLoadUnit(xmlNodePtr elem, Load *currentLoad);
-
-
-private:
- Loads *l;
-
- const char*xmlFile;
-};
-
-#endif
diff --git a/modeling/libraries/lml/api-doc/CompileLatex.pl b/modeling/libraries/lml/api-doc/CompileLatex.pl
index dc80ec1..81ae761 100755
--- a/modeling/libraries/lml/api-doc/CompileLatex.pl
+++ b/modeling/libraries/lml/api-doc/CompileLatex.pl
@@ -6,7 +6,7 @@ q^
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/lml/schema/physicalModelLoad.xsd b/modeling/libraries/lml/schema/physicalModelLoad.xsd
deleted file mode 100644
index d558e47..0000000
--- a/modeling/libraries/lml/schema/physicalModelLoad.xsd
+++ /dev/null
@@ -1,166 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Document : physicalModelLoad.xsd
- Created on : 24 Septembre 2003, 11:35
- Author : Emmanuel Promayon
- Description:
- Schema for validating physical model loads documents.
- Revision : $Id: physicalModelLoad.xsd 2382 2005-08-03 10:08:08Z promayon $
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
- targetNamespace="http://www-timc.imag.fr/load"
- xmlns="http://www-timc.imag.fr/load"
- elementFormDefault="qualified"
- version="0.1">
-
- <xsd:element name="loads" type="Loads"/>
-
- <xsd:complexType name="Loads">
- <xsd:annotation>
- <xsd:documentation>
- Loads is a composed by one to several data of type Load
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="load" type="Load" minOccurs="1" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="Load">
- <xsd:sequence>
- <xsd:element name="appliedTo" type="AppliedTo"/>
- <xsd:element name="direction" type="Direction"/>
- <xsd:element name="valueEvent" type="ValueEvent" minOccurs="1" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:simpleType name="AppliedTo">
- <xsd:restriction base="xsd:string">
- <!-- To restrict to only atom numbers: uncomment this:
- <xsd:pattern value="(((\d+)|(\d+-\d+))(,((\d+)|(\d+-\d+)))*)|(\c+\s*)+(,(\c+\s*)+)*"/>
- -->
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="Direction">
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="x" type="DirState"/>
- <xsd:attribute name="y" type="DirState"/>
- <xsd:attribute name="z" type="DirState"/>
- <xsd:attribute name="toward" type="xsd:nonNegativeInteger"/>
-<!-- <xsd:attributeGroup ref="DirectionAttributes"/> -->
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:attributeGroup name="DirectionAttributes">
- <xsd:attribute name="x" type="DirState"/>
- <xsd:attribute name="y" type="DirState"/>
- <xsd:attribute name="z" type="DirState"/>
- </xsd:attributeGroup>
-
- <xsd:simpleType name="DirState">
- <xsd:union>
- <xsd:simpleType>
- <xsd:restriction base="xsd:double"/>
- </xsd:simpleType>
- <xsd:simpleType>
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="NULL"/>
- </xsd:restriction>
- </xsd:simpleType>
- </xsd:union>
- </xsd:simpleType>
-
- <xsd:complexType name="ValueEvent">
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="date" type="xsd:double" use="required"/>
- <xsd:attribute name="value" type="xsd:double" use="required"/>
- <xsd:attribute name="transition" type="Transition"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="Transition">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="LINEAR"/>
- <xsd:enumeration value="EXPONENTIAL"/>
- <xsd:enumeration value="LOGARITHMIC"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="Force">
- <xsd:complexContent>
- <xsd:extension base="Load">
- <xsd:sequence>
- <xsd:element name="unit" type="ForceUnit"/>
- </xsd:sequence>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Translation">
- <xsd:complexContent>
- <xsd:extension base="Load">
- <xsd:sequence>
- <xsd:element name="unit" type="TranslationUnit"/>
- </xsd:sequence>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Rotation">
- <xsd:complexContent>
- <xsd:extension base="Load">
- <xsd:sequence>
- <xsd:element name="unit" type="RotationUnit"/>
- </xsd:sequence>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Pressure">
- <xsd:complexContent>
- <xsd:extension base="Load">
- <xsd:sequence>
- <xsd:element name="unit" type="PressureUnit"/>
- </xsd:sequence>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="ForceUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="pN"/>
- <xsd:enumeration value="N"/>
- <xsd:enumeration value="kN"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:simpleType name="TranslationUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="mm"/>
- <xsd:enumeration value="micron"/>
- <xsd:enumeration value="nm"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:simpleType name="RotationUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="radian"/>
- <xsd:enumeration value="degree"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:simpleType name="PressureUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="kPa"/>
- <xsd:enumeration value="mmHg"/>
- </xsd:restriction>
- </xsd:simpleType>
-
-</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lml/test/CMakeLists.txt b/modeling/libraries/lml/test/CMakeLists.txt
deleted file mode 100644
index cc63de9..0000000
--- a/modeling/libraries/lml/test/CMakeLists.txt
+++ /dev/null
@@ -1,26 +0,0 @@
-if(NOT PACKAGING_NSIS)
- set (SRCS lmltest.cpp)
- add_executable(library-lmltest ${SRCS})
- set(LML_LIBRARIES library-lml ${LIBXML2_LIBRARIES})
- target_link_libraries(library-lmltest ${LML_LIBRARIES})
- add_dependencies(library-lmltest library-lml)
-
- #----------
- # Testing
- #----------
- # TODO compare output csv with a static output csv (that it should produce)
- camitk_init_test(library-lmltest)
- # should pass because lmltest run with no arguments shows usage and exit success
- camitk_add_test()
-
- # should pass because invoking lmltest with a faulty arguments results in printing
- # an "Argument error" message (and exit failure)
- camitk_add_test(EXECUTABLE_ARGS "-error" PASS_REGULAR_EXPRESSION "Argument errors: ")
-
- # should pass because reading test.lml should not modify it (input == output)
- if(NOT WIN32)#this test fails on windows7 VM
- camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/test.lml"
- PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/test.lml )
- endif()
-
-endif()
\ No newline at end of file
diff --git a/modeling/libraries/lml/test/lmltest.cpp b/modeling/libraries/lml/test/lmltest.cpp
deleted file mode 100644
index 31929e0..0000000
--- a/modeling/libraries/lml/test/lmltest.cpp
+++ /dev/null
@@ -1,275 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// include the needed files
-#include <Loads.h>
-#include <Translation.h>
-#include <Force.h>
-#include <string>
-#include <string.h>
-#include <ostream>
-#include <fstream>
-
-void testActivation(std::string imlFile, double dt, std::string outcsv = "") {
- // read the loads
- Loads list(imlFile.c_str());
-
- // search for the first event
- double tmin = list.getFirstEventDate();
-
- // search for the last event
- double tmax = list.getLastEventDate();
-
- std::cout << "Checking load activation, with time = [" << tmin << ".." << tmax << "], dt="
- << dt << std::endl;
-
- // open the output file if needed
- std::ofstream outStream;
-
- if (outcsv != "") {
- outStream.open(outcsv.c_str());
- }
-
- double t;
-
- if (outcsv != "") {
- outStream << "t ";
-
- for (unsigned int i=0; i<list.numberOfLoads(); i++) {
- outStream << list.getLoad(i)->getType() << " ";
- }
-
- outStream << std::endl;
- }
-
- // loop from tmin to tmax and display each list of loads at each time t
- for (t=tmin-dt; t<=tmax+dt; t+=dt) {
- std::cout << "---------------------------" << std::endl;
- std::cout << "time t=" << t << std::endl;
-
- if (outcsv != "") {
- outStream << t << " ";
- }
-
- // check all the loads
- for (unsigned int i=0; i<list.numberOfLoads(); i++) {
- Load * l = list.getLoad(i);
-
- // print the value
- if (l->isActive(t)) {
- std::cout << "\t- active ";
- std::cout << l->getType() << ": ";
-
- if (l->getDirection().isToward()) {
- std::cout << "dir toward Atom#" << l->getDirection().getToward() << ", ";
- } else {
- std::cout << "dir=(";
-
- // x
- if (l->getDirection().isXSpecified())
- std::cout << l->getDirection().getX();
- else if (l->getDirection().isXNull())
- std::cout << "NULL";
- else
- std::cout << "free";
-
- std::cout << ",";
-
- // y
- if (l->getDirection().isYSpecified())
- std::cout << l->getDirection().getY();
- else if (l->getDirection().isYNull())
- std::cout << "NULL";
- else
- std::cout << "free";
-
- std::cout << ",";
-
- // z
- if (l->getDirection().isZSpecified())
- std::cout << l->getDirection().getZ();
- else if (l->getDirection().isZNull())
- std::cout << "NULL";
- else
- std::cout << "free";
-
- std::cout << "), ";
- }
-
- std::cout << "val=" << l->getValue(t);
- std::cout << std::endl;
-
- if (outcsv != "") {
- outStream << l->getValue(t) << " ";
- }
- } else {
- if (outcsv != "") {
- outStream << 0.0 << " ";
- }
- }
- }
-
- if (outcsv != "") {
- outStream << std::endl;
- }
- }
-
- if (outcsv != "") {
- outStream.close();
- }
-}
-
-
-int main(int argc, char *argv[]) {
- // test param
- std::string ifile;
- bool inputTest;
- std::string ofile;
- bool outputTest;
- double dt;
- bool activationTest;
- std::string afile;
- bool ansysOutput;
- std::string csvfile = "";
-
- // test the arguments
- inputTest = outputTest = activationTest = ansysOutput = false;
-
- for (int i=1; i<argc; i++) {
- if (!strcmp(argv[i],"-i")) {
- ifile = argv[i+1];
- inputTest = true;
- }
-
- if (!strcmp(argv[i],"-o")) {
- ofile = argv[i+1];
- outputTest = true;
- }
-
- if (!strcmp(argv[i],"-dt")) {
- dt = atof(argv[i+1]);
- activationTest = true;
- }
-
- if (!strcmp(argv[i],"-a")) {
- afile = argv[i+1];
- ansysOutput = true;
- }
-
- if (!strcmp(argv[i],"-plot")) {
- csvfile = argv[i+1];
- }
- }
-
- if ((!activationTest && !inputTest && !outputTest) ||
- (!inputTest && ansysOutput) // can't do an ansys output if there are no input file
- ) {
- if (argc>1) {
- std::cout << "Argument errors: ";
- for(int i=1; i<argc; i++) {
- std::cout << "[" << argv[i] << "] ";
- }
- }
- std::cout << std::endl;
- std::cout << "usage: lmltest [-i file.xml] [-o out.xml] [-dt dt] [-a ansys.mac] [-plot out.csv]" << std::endl;
- std::cout << "\t-i in.xml\treading test: read the file, create object and then print them on stdout" << std::endl;
- std::cout << "\t-o out.xml\twriting test: a file 'out.xml' will be created with synthesis data and then re-read for testing" << std::endl;
- std::cout << "\t-dt dt\tactivation test: the delta t used to check load activations (if not given, no activation test)" << std::endl;
- std::cout << "\t-plot out.csv\toptional for the activation test: output a simple csv file that can be use to plot the loads values along time (column1=time)" << std::endl;
- std::cout << "\t-a ansys.mac\tprint out the input file in ansys format" << std::endl;
- std::cout << std::endl;
- std::cout << "LML " << Loads::VERSION << std::endl;
- if (argc>1)
- return EXIT_FAILURE;
- else
- return EXIT_SUCCESS;
- }
-
- if (inputTest) {
- Loads allLoads(ifile);
- allLoads.xmlPrint(std::cout);
-
- if (ansysOutput) {
- std::cout << "ANSYS translation to: " << afile << std::endl;
- std::ofstream outputFile;
- outputFile.open(afile.c_str());
- allLoads.ansysPrint(outputFile);
- outputFile.close();
- }
- }
-
- if (outputTest) {
- // 1. create a new synthetic load list
- Loads l;
-
- // 2. add a translation
- Translation * t = new Translation();
-
- t->addTarget("1-20");
- t->setDirection(0.21, 12.0, 5.39);
- t->addEvent(new ValueEvent(10.0, 0.5));
- t->addEvent(new ValueEvent(100.0, 1.5));
- t->setUnit(TranslationUnit::MM());
-
- // insert the translation t in l
- l.addLoad(t);
-
- // 3 . add a force
- Force * f = new Force();
-
- f->addTarget("1-5,7,10-12");
- f->setDirection(0.21, 12.0, 5.39);
- f->addEvent(new ValueEvent(0.0, 1.0));
- f->addEvent(new ValueEvent(15.0, 2.0));
- f->addEvent(new ValueEvent(0.0, 3.0));
- f->setUnit(ForceUnit::KN());
-
- // insert the translation t in l
- l.addLoad(f);
-
- // 4. print to file
- std::cout << "Writing test loads to:" << argv[1] << std::endl;
- std::ofstream outputFile;
- outputFile.open(ofile.c_str());
- l.xmlPrint(outputFile);
- outputFile.close();
-
- // 5. Try to read it again and print to stdout
- std::cout << "Printing of loads from: " << ifile << std::endl;
- Loads l2(ofile);
- l2.xmlPrint(std::cout);
- }
-
- // test the load activations, using time step=0.1
- if (activationTest) {
- if (inputTest)
- testActivation(ifile, dt, csvfile);
-
- if (outputTest)
- testActivation(ofile, dt, csvfile);
- }
-
- return EXIT_SUCCESS;
-}
diff --git a/modeling/libraries/lmlschema/Acceleration.xsd b/modeling/libraries/lmlschema/Acceleration.xsd
new file mode 100644
index 0000000..e173516
--- /dev/null
+++ b/modeling/libraries/lmlschema/Acceleration.xsd
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Units.xsd"/>
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:complexType name="Acceleration">
+ <xsd:complexContent>
+ <xsd:extension base="Load">
+ <xsd:sequence>
+ <xsd:element name="unit" type="AccelerationUnit"/>
+ </xsd:sequence>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/AppliedTo.xsd b/modeling/libraries/lmlschema/AppliedTo.xsd
new file mode 100644
index 0000000..492b97b
--- /dev/null
+++ b/modeling/libraries/lmlschema/AppliedTo.xsd
@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:simpleType name="AppliedTo">
+ <xsd:restriction base="xsd:string">
+ <!-- To restrict to only atom numbers: uncomment this:
+ <xsd:pattern value="(((\d+)|(\d+-\d+))(,((\d+)|(\d+-\d+)))*)|(\c+\s*)+(,(\c+\s*)+)*"/>
+ -->
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/CMakeLists.txt b/modeling/libraries/lmlschema/CMakeLists.txt
new file mode 100644
index 0000000..576831b
--- /dev/null
+++ b/modeling/libraries/lmlschema/CMakeLists.txt
@@ -0,0 +1,33 @@
+# XSD really needed
+find_package(XSD REQUIRED)
+
+# Create lib files from xsd
+file (GLOB_RECURSE XSD_INPUT_FILES *.xsd)
+
+# generates headers from scratch
+set (XSD_H)
+set (XSD_SRCS)
+
+if (XSD_COMMAND)
+ set(XSD_COMMAND xsdcxx CACHE STRING "Name of the XSD code synthesis compiler")
+ # generates headers from scratch
+ foreach(xsdFile ${XSD_INPUT_FILES})
+ get_filename_component(xsdFileName ${xsdFile} NAME_WE)
+ add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
+ COMMAND ${XSD_COMMAND}
+ ARGS cxx-tree --generate-polymorphic --polymorphic-type Load --generate-serialization --namespace-map =load ${xsdFile}
+ DEPENDS ${xsdFile})
+ set(XSD_H ${XSD_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
+ set(XSD_SRCS ${XSD_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
+ endforeach()
+else()
+ message(FATAL_ERROR "Cannot find xsd or xsdcxx command: please install XSD / check xsd or xsdcxx binary is in your sytem PATH")
+endif()
+
+camitk_library(STATIC
+ SOURCES ${XSD_H} ${XSD_SRCS}
+ NEEDS_XSD
+ HEADERS_TO_INSTALL ${XSD_H}
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "Data description of LML: Load Markup Language"
+)
diff --git a/modeling/libraries/lmlschema/DirState.xsd b/modeling/libraries/lmlschema/DirState.xsd
new file mode 100644
index 0000000..3da10d0
--- /dev/null
+++ b/modeling/libraries/lmlschema/DirState.xsd
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:simpleType name="DirState">
+ <xsd:union>
+ <xsd:simpleType>
+ <xsd:restriction base="xsd:double"/>
+ </xsd:simpleType>
+ <xsd:simpleType>
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="NULL"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+ </xsd:union>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Direction.xsd b/modeling/libraries/lmlschema/Direction.xsd
new file mode 100644
index 0000000..abd34e4
--- /dev/null
+++ b/modeling/libraries/lmlschema/Direction.xsd
@@ -0,0 +1,54 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="DirState.xsd"/>
+
+ <xsd:complexType name="Direction">
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="x" type="DirState"/>
+ <xsd:attribute name="y" type="DirState"/>
+ <xsd:attribute name="z" type="DirState"/>
+ <xsd:attribute name="toward" type="xsd:nonNegativeInteger"/>
+ <!-- <xsd:attributeGroup ref="DirectionAttributes"/> -->
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <!-- <xsd:attributeGroup name="DirectionAttributes">
+ <xsd:attribute name="x" type="DirState"/>
+ <xsd:attribute name="y" type="DirState"/>
+ <xsd:attribute name="z" type="DirState"/>
+ </xsd:attributeGroup>-->
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Force.xsd b/modeling/libraries/lmlschema/Force.xsd
new file mode 100644
index 0000000..1fc37b2
--- /dev/null
+++ b/modeling/libraries/lmlschema/Force.xsd
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Units.xsd"/>
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:complexType name="Force">
+ <xsd:complexContent>
+ <xsd:extension base="Load">
+ <xsd:sequence>
+ <xsd:element name="unit" type="ForceUnit"/>
+ </xsd:sequence>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Load.xsd b/modeling/libraries/lmlschema/Load.xsd
new file mode 100644
index 0000000..5e159ea
--- /dev/null
+++ b/modeling/libraries/lmlschema/Load.xsd
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="AppliedTo.xsd"/>
+ <xsd:include schemaLocation="Direction.xsd"/>
+ <xsd:include schemaLocation="ValueEvent.xsd"/>
+
+ <xsd:complexType name="Load">
+ <xsd:sequence>
+ <xsd:element name="appliedTo" type="AppliedTo"/>
+ <xsd:element name="direction" type="Direction"/>
+ <xsd:element name="valueEvent" type="ValueEvent" minOccurs="1" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Loads.xsd b/modeling/libraries/lmlschema/Loads.xsd
new file mode 100644
index 0000000..08767ad
--- /dev/null
+++ b/modeling/libraries/lmlschema/Loads.xsd
@@ -0,0 +1,49 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:element name="loads" type="Loads"/>
+ <xsd:complexType name="Loads">
+ <xsd:annotation>
+ <xsd:documentation>
+ Loads is a composed by one to several data of type Load
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="load" type="Load" minOccurs="1" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Pressure.xsd b/modeling/libraries/lmlschema/Pressure.xsd
new file mode 100644
index 0000000..c18f782
--- /dev/null
+++ b/modeling/libraries/lmlschema/Pressure.xsd
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Units.xsd"/>
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:complexType name="Pressure">
+ <xsd:complexContent>
+ <xsd:extension base="Load">
+ <xsd:sequence>
+ <xsd:element name="unit" type="PressureUnit"/>
+ </xsd:sequence>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Rotation.xsd b/modeling/libraries/lmlschema/Rotation.xsd
new file mode 100644
index 0000000..47b4a56
--- /dev/null
+++ b/modeling/libraries/lmlschema/Rotation.xsd
@@ -0,0 +1,48 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Units.xsd"/>
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:complexType name="Rotation">
+ <xsd:complexContent>
+ <xsd:extension base="Load">
+ <xsd:sequence>
+ <xsd:element name="unit" type="RotationUnit"/>
+ </xsd:sequence>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Transition.xsd b/modeling/libraries/lmlschema/Transition.xsd
new file mode 100644
index 0000000..324626a
--- /dev/null
+++ b/modeling/libraries/lmlschema/Transition.xsd
@@ -0,0 +1,42 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:simpleType name="Transition">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="LINEAR"/>
+ <xsd:enumeration value="EXPONENTIAL"/>
+ <xsd:enumeration value="LOGARITHMIC"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Translation.xsd b/modeling/libraries/lmlschema/Translation.xsd
new file mode 100644
index 0000000..6c84bce
--- /dev/null
+++ b/modeling/libraries/lmlschema/Translation.xsd
@@ -0,0 +1,47 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Units.xsd"/>
+ <xsd:include schemaLocation="Load.xsd"/>
+
+ <xsd:complexType name="Translation">
+ <xsd:complexContent>
+ <xsd:extension base="Load">
+ <xsd:sequence>
+ <xsd:element name="unit" type="TranslationUnit"/>
+ </xsd:sequence>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/Units.xsd b/modeling/libraries/lmlschema/Units.xsd
new file mode 100644
index 0000000..ec04286
--- /dev/null
+++ b/modeling/libraries/lmlschema/Units.xsd
@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:simpleType name="ForceUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="pN"/>
+ <xsd:enumeration value="N"/>
+ <xsd:enumeration value="kN"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:simpleType name="TranslationUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="mm"/>
+ <xsd:enumeration value="micron"/>
+ <xsd:enumeration value="nm"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:simpleType name="RotationUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="radian"/>
+ <xsd:enumeration value="degree"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:simpleType name="PressureUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="kPa"/>
+ <xsd:enumeration value="mmHg"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:simpleType name="AccelerationUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="m/s^2"/>
+ <xsd:enumeration value="cm/s^2"/>
+ <xsd:enumeration value="mm/s^2"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/lmlschema/ValueEvent.xsd b/modeling/libraries/lmlschema/ValueEvent.xsd
new file mode 100644
index 0000000..a0d78d0
--- /dev/null
+++ b/modeling/libraries/lmlschema/ValueEvent.xsd
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
+ targetNamespace="http://www-timc.imag.fr/load"
+ xmlns="http://www-timc.imag.fr/load"
+ elementFormDefault="qualified"
+ version="1.0">
+
+ <xsd:include schemaLocation="Transition.xsd"/>
+
+ <xsd:complexType name="ValueEvent">
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="date" type="xsd:double" use="required"/>
+ <xsd:attribute name="value" type="xsd:double" use="required"/>
+ <xsd:attribute name="transition" type="Transition"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/mml/CMakeLists.txt b/modeling/libraries/mml/CMakeLists.txt
index b0bc483..3c02f43 100644
--- a/modeling/libraries/mml/CMakeLists.txt
+++ b/modeling/libraries/mml/CMakeLists.txt
@@ -5,24 +5,11 @@ if (NOT CEP_NAME STREQUAL "modeling")
message(SEND_ERROR "Compilation of MML outside CamiTK SDK not implemented yet. Please contact authors")
endif()
-set(MML_INCLUDE_DIRECTORIES
- ${CAMITK_INCLUDE_DIRECTORIES}
- ${CAMITK_INCLUDE_DIR}/libraries
- ${CAMITK_INCLUDE_DIR}/libraries/monitoring
- ${CAMITK_INCLUDE_DIR}/libraries/mml
- ${CAMITK_INCLUDE_DIR}/libraries/pml
- ${CAMITK_INCLUDE_DIR}/libraries/lml
- ${LIBXML2_INCLUDE_DIR}
- ${XERCESC_INCLUDE_DIR}
- ${XSD_INCLUDE_DIR}
-)
+# for generating GUI
+option(MML_GENERATE_GUI "Generates MML GUI for CamiTK action" ON)
-set(MML_LIBRARIES
- ${LIBXML2_LIBRARIES}
- ${XERCESC_LIBRARIES}
-)
-
-# default list of subdirectory
-add_subdirectory(schema)
add_subdirectory(monitoring)
-add_subdirectory(applications)
+
+if(MML_GENERATE_GUI)
+ add_subdirectory(monitoringgui)
+endif()
diff --git a/modeling/libraries/mml/applications/CMakeLists.txt b/modeling/libraries/mml/applications/CMakeLists.txt
deleted file mode 100644
index 2c0138d..0000000
--- a/modeling/libraries/mml/applications/CMakeLists.txt
+++ /dev/null
@@ -1,42 +0,0 @@
-# generation benchmark binary is optionnal
-
-if(MML_GENERATE_GUI)
- find_package(Qt4 REQUIRED)
- add_definitions(-DMML_GENERATE_GUI)
- add_subdirectory(gui)
-endif()
-
-option(MML_GENERATE_BENCHMARK "Generates benchmark binary" OFF)
-if(MML_GENERATE_BENCHMARK)
- add_subdirectory(benchmark)
-endif()
-
-if(MML_SOFA_SUPPORT)
- option(MML_GENERATE_SCN2PML "Generates scn2pml binary" OFF)
- if(MML_GENERATE_SCN2PML)
- add_subdirectory(scn2pml)
- endif()
-endif()
-
-option(MML_GENERATE_PML2MMLOUT "Generates pml2mmlOut binary" OFF)
-if(MML_GENERATE_PML2MMLOUT)
- add_subdirectory(pml2mmlOut)
-endif()
-
-option(MML_GENERATE_PARAMEXPLORER "Generates paramExplorer binary" OFF)
-if(MML_GENERATE_PARAMEXPLORER)
- add_subdirectory(paramExplorer)
-endif()
-
-# TODO Find(sofa)...
-if(MML_SOFA_SUPPORT)
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib)
- else(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif(WIN32)
- set(MML_bin_link ${MML_bin_link} ${MML_SOFA_LIB_DIR})
-endif(MML_SOFA_SUPPORT)
-
-
-link_directories(${MML_bin_link})
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/benchmark/CMakeLists.txt b/modeling/libraries/mml/applications/benchmark/CMakeLists.txt
deleted file mode 100644
index ba29bec..0000000
--- a/modeling/libraries/mml/applications/benchmark/CMakeLists.txt
+++ /dev/null
@@ -1,47 +0,0 @@
-project(benchmark)
-
-if(PACKAGING_NSIS)
- set(benchmark_LIBRARIES
- ${MML_LIBRARIES}
- library_monitoring
- )
-else()
- set(benchmark_LIBRARIES
- ${MML_LIBRARIES}
- library-monitoring
-)
-endif()
-
-
-set(HEADERS
-)
-
-set(SRCS
- benchmark.cpp
- ${HEADERS}
-)
-
-if(MML_SOFA_SUPPORT)
- #FIXME Sofa support => fix sofa dependency properly
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
-endif(MML_SOFA_SUPPORT)
-
-include_directories(${MML_INCLUDE_DIRECTORIES})
-
-link_directories(${CAMITK_LINK_DIRECTORIES})
-
-add_executable(benchmark ${SRCS})
-
-message(STATUS " : benchmark_LIBRARIES = ${benchmark_LIBRARIES}")
-
-target_link_libraries(benchmark ${benchmark_LIBRARIES} ${QT_LIBRARIES})
-
-add_custom_target(benchmakBin ALL)
-
-add_dependencies(benchmark monitoring)
-
diff --git a/modeling/libraries/mml/applications/benchmark/benchmark.cpp b/modeling/libraries/mml/applications/benchmark/benchmark.cpp
deleted file mode 100644
index a37b710..0000000
--- a/modeling/libraries/mml/applications/benchmark/benchmark.cpp
+++ /dev/null
@@ -1,59 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <memory> // std::auto_ptr
-#include <iostream>
-
-#include "MonitorIn.hxx"
-#include "manager/MonitoringManager.h"
-#include "manager/MonitoringManagerFactory.h"
-
-#ifdef MML_GENERATE_GUI
-#include <QApplication>
-#endif
-
-using namespace std;
-
-int
-main (int argc, char* argv[]) {
- if (argc != 2) {
- cerr << "usage: " << argv[0] << " file.mml" << endl;
- return 1;
- }
-
- try {
-#ifdef MML_GENERATE_GUI
- QApplication app(argc, argv);
-#endif
- MonitoringManager* c=MonitoringManagerFactory::createManager(argv[1]);
-
- c->simulate();
- delete c;
- } catch (const xml_schema::exception& e) {
- cerr << e << endl;
- return 1;
- }
-}
-
diff --git a/modeling/libraries/mml/applications/gui/BenchmarkGui.cpp b/modeling/libraries/mml/applications/gui/BenchmarkGui.cpp
deleted file mode 100644
index 8c45f4b..0000000
--- a/modeling/libraries/mml/applications/gui/BenchmarkGui.cpp
+++ /dev/null
@@ -1,39 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <QApplication>
-
-#include "MonitoringGuiManager.h"
-
-
-using namespace std;
-
-int
-main (int argc, char* argv[]) {
- QApplication app(argc, argv);
- MonitoringGuiManager* manager=new MonitoringGuiManager();
- return app.exec();
- delete manager;
-}
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/gui/CMakeLists.txt b/modeling/libraries/mml/applications/gui/CMakeLists.txt
deleted file mode 100644
index cc9e9ff..0000000
--- a/modeling/libraries/mml/applications/gui/CMakeLists.txt
+++ /dev/null
@@ -1,101 +0,0 @@
-project(gui)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_monitoringgui)
- set(LIB_NAME_MONITORING library_monitoring)
-else()
- set(LIB_NAME library-monitoringgui)
- set(LIB_NAME_MONITORING library-monitoring)
-endif()
-
-find_package(Qt4 REQUIRED)
-include(${QT_USE_FILE})
-
-set(gui_MOC_SRCS
- MonitoringGuiManager.h
- MonitoringDialog.h
- MonitoringDriver.h
-)
-
-set(gui_UIS
- MonitoringDialog.ui
-)
-
-qt4_wrap_ui(gui_UIS_H ${gui_UIS})
-qt4_wrap_cpp(gui_MOCS ${gui_MOC_SRCS})
-
-qt4_add_resources(gui_QRC MonitoringGuiIcons.qrc)
-
-set(gui_HEADERS
- MonitoringGuiManager.h
- MMLMonitoringGUIAPI.h
- MonitoringDialog.h
- MonitoringDriver.h
- ${gui_UIS_H}
- ${gui_QRC}
-)
-
-set(gui_SRCS
- MonitoringGuiManager.cpp
- MonitoringDialog.cpp
- MonitoringDriver.cpp
- BenchmarkGui.cpp
- ${gui_HEADERS}
- ${gui_MOCS}
- ${gui_MOC_UI}
-)
-
-if(MML_SOFA_SUPPORT)
- #FIXME Sofa support => fix sofa dependency properly
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
-endif(MML_SOFA_SUPPORT)
-
-add_definitions(-DCOMPILE_MML_MONIGORING_GUI_TOOL)
-
-# add lib as a camitk tool
-camitk_library( STATIC
- NEEDS_LIBXML2
- NEEDS_XSD
- LIBNAME monitoringgui
- SOURCES ${gui_SRCS}
- NEEDS_CEP_LIBRARIES monitoring pml lml mml
-)
-
-add_dependencies(${LIB_NAME} ${LIB_NAME_MONITORING})
-
-set(gui_LIBRARIES
- ${QT_LIBRARIES}
- ${MML_LIBRARIES}
- ${LIB_NAME_MONITORING}
- ${LIB_NAME}
-)
-
-add_executable(benchmarkgui ${gui_SRCS})
-
-target_link_libraries(benchmarkgui ${gui_LIBRARIES})
-
-#--------------
-# installation
-#--------------
-export_headers(
- ${gui_HEADERS}
- COMPONENT ${LIB_NAME}
- GROUP libraries
-)
-
-cpack_add_component( ${LIB_NAME}
- DISPLAY_NAME ${LIB_NAME}
- DESCRIPTION "Graphical user interface to monitor a biomechanical deformation."
- GROUP CEP_MODELING
- )
-
-# lib installation
-# install(TARGETS monitoringgui
- # ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- # COMPONENT monitoringgui
-# )
diff --git a/modeling/libraries/mml/applications/gui/MMLMonitoringGUIAPI.h b/modeling/libraries/mml/applications/gui/MMLMonitoringGUIAPI.h
deleted file mode 100644
index c9883bd..0000000
--- a/modeling/libraries/mml/applications/gui/MMLMonitoringGUIAPI.h
+++ /dev/null
@@ -1,48 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// The following ifdef block is the standard way of creating macros which make exporting
-// from a DLL simpler. All files within this DLL are compiled with the COMPILE_MML_MONIGORING_GUI_TOOL
-// flag defined on the command line. this symbol should not be defined on any project
-// that uses this DLL. This way any other project whose source files include this file see
-// MML_MONITORING_GUI_API functions as being imported from a DLL, wheras this DLL sees symbols
-// defined with this macro as being exported.
-#if defined(_WIN32) // MSVC and mingw
-#ifdef COMPILE_MML_MONIGORING_GUI_TOOL
-#define MML_MONITORING_GUI_API __declspec(dllexport)
-#else
-#define MML_MONITORING_GUI_API __declspec(dllimport)
-#endif
-#else
-// for all other platforms MML_MONITORING_GUI_API is defined to be "nothing"
-#ifndef MML_MONITORING_GUI_API
-#define MML_MONITORING_GUI_API
-#endif
-#endif // MSVC and mingw
-
-//... disabling the warning on windows msvc
-#if defined(_WIN32) && !defined(__MINGW32__) // MSVC only
-#pragma warning( disable : 4251 )
-#endif // MSVC only
diff --git a/modeling/libraries/mml/applications/gui/MonitoringDialog.cpp b/modeling/libraries/mml/applications/gui/MonitoringDialog.cpp
deleted file mode 100644
index 7807eda..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringDialog.cpp
+++ /dev/null
@@ -1,350 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-// Monitor includes
-#include "MonitoringDialog.h"
-#include "MonitoringDriver.h"
-#include "Monitor.h"
-#include "MonitoringGuiManager.h"
-#include "InteractiveMonitoringManager.h"
-
-// Criterion includes
-#include "StoppingCriterion.h"
-#include "Criterion.h"
-
-// qt
-#include <QtGui>
-
-MonitoringDialog::MonitoringDialog(MonitoringGuiManager* guiManager, QWidget* parent): QDialog(parent) {
- ui.setupUi(this);
- this->guiManager=guiManager;
-
- QObject* qobj=guiManager->getDriver();
- connect(qobj, SIGNAL(doOneStep()), guiManager, SLOT(doOneStep()));
-
- connect(ui.rewindPushButton, SIGNAL(clicked()), this, SLOT(rewind()));
- connect(ui.pausePushButton, SIGNAL(clicked()), this, SLOT(pause()));
- connect(ui.playOneStepPushButton, SIGNAL(clicked()), this, SLOT(simulateOneStep()));
- connect(ui.playPushButton, SIGNAL(clicked()), this, SLOT(simulate()));
-
- connect(ui.mmlInBrowsePushButton, SIGNAL(clicked()), this, SLOT(browseMmlIn()));
- connect(ui.mmlOutSavePushButton, SIGNAL(clicked()), this, SLOT(saveMmlOut()));
- connect(ui.csvSavePushButton, SIGNAL(clicked()), this, SLOT(saveCsv()));
- connect(ui.mmlInSavePushButton, SIGNAL(clicked()), this, SLOT(saveMmlIn()));
- connect(ui.pmlBrowsePushButton, SIGNAL(clicked()), this, SLOT(browsePml()));
- connect(ui.lmlBrowsePushButton, SIGNAL(clicked()), this, SLOT(browseLml()));
-
- connect(ui.dtLineEdit,SIGNAL(editingFinished()),this, SLOT(dtModified()));
- connect(ui.refreshLineEdit,SIGNAL(editingFinished()),this, SLOT(refreshModified()));
-
- ui.rewindPushButton->setFocusPolicy( Qt::NoFocus );
- ui.pausePushButton->setFocusPolicy( Qt::NoFocus );
- ui.playOneStepPushButton->setFocusPolicy( Qt::NoFocus );
- ui.playPushButton->setFocusPolicy( Qt::NoFocus );
- ui.mmlInBrowsePushButton->setFocusPolicy( Qt::NoFocus );
- ui.mmlOutSavePushButton->setFocusPolicy( Qt::NoFocus );
- ui.mmlInSavePushButton->setFocusPolicy( Qt::NoFocus );
- ui.pmlBrowsePushButton->setFocusPolicy( Qt::NoFocus );
- ui.lmlBrowsePushButton->setFocusPolicy( Qt::NoFocus );
-
- ui.currentFpsLineEdit->setStyleSheet("background: lightgreen");
- ui.averageFpsLineEdit->setStyleSheet("background: lightgreen");
- ui.timeLineEdit->setStyleSheet("background: lightgreen");
-
-}
-
-//--------------- Destructor ---------------------------------
-MonitoringDialog::~MonitoringDialog() {
- // unselect and clear the monitor tab's content.
- // this allow not to encounter crash when closing the image
- // see bug 116 : https://forge.imag.fr/tracker/index.php?func=detail&aid=116&group_id=184&atid=792
- this->ui.monitorsTable->clearContents();
-}
-
-//--------------- init ---------------------------------
-void MonitoringDialog::init() {
- updateAll();
-}
-
-//--------------- enableButtons -----------------------
-void MonitoringDialog::enableButtons(bool enable) {
- ui.dtLineEdit->setEnabled(enable);
- ui.refreshLineEdit->setEnabled(enable);
- ui.pmlBrowsePushButton->setEnabled(enable);
- ui.lmlBrowsePushButton->setEnabled(enable);
- ui.lmlLineEdit->setEnabled(enable);
- ui.pmlLineEdit->setEnabled(enable);
- ui.mmlOutSavePushButton->setEnabled(enable);
- ui.mmlInSavePushButton->setEnabled(enable);
- ui.rewindPushButton->setEnabled(enable);
- ui.playPushButton->setEnabled(enable);
- ui.playOneStepPushButton->setEnabled(enable);
- ui.pausePushButton->setEnabled(enable);
- ui.currentFpsLineEdit->setEnabled(enable);
- ui.averageFpsLineEdit->setEnabled(enable);
- ui.timeLineEdit->setEnabled(enable);
-
- if (guiManager->getMonitoringManager()) {
- //an mmlIn file is loaded check if lml and pml is present
- if (!guiManager->getMonitoringManager()->isLmlPresent()) {
- ui.lmlBrowsePushButton->setEnabled(false);
- ui.lmlLineEdit->setEnabled(false);
- }
- if (!guiManager->getMonitoringManager()->isPmlPresent()) {
- ui.pmlBrowsePushButton->setEnabled(false);
- ui.pmlLineEdit->setEnabled(false);
- ui.lmlBrowsePushButton->setEnabled(false);
- ui.lmlLineEdit->setEnabled(false);
- }
- }
-}
-
-//--------------- browseMmlIn ---------------------------------
-void MonitoringDialog::browseMmlIn() {
- QString fileName = QFileDialog::getOpenFileName(this,tr("Open MMLIn"), ".",tr("MML files (*.mml)"));
- if (!fileName.isEmpty()) {
- ui.mmlInLineEdit->setText(fileName);
- guiManager->loadMmlInFile(fileName);
- }
-}
-
-//--------------- saveMmlOut ---------------------------------
-void MonitoringDialog::saveMmlOut() {
- QString fileName = QFileDialog::getSaveFileName(this,tr("Save MMLOut"), ".",tr("MML files (*.mml)"));
- if (!fileName.isEmpty()) {
- guiManager->saveMmlOutFile(fileName);
- }
-}
-
-//--------------- saveCsv ---------------------------------
-void MonitoringDialog::saveCsv() {
- QString fileName = QFileDialog::getSaveFileName(this,tr("Save as Csv"), ".",tr("CSV files (*.csv)"));
- if (!fileName.isEmpty()) {
- guiManager->saveCsvFile(fileName);
- }
-}
-
-//--------------- saveMmlIn ---------------------------------
-void MonitoringDialog::saveMmlIn() {
- QString fileName = QFileDialog::getSaveFileName(this,tr("Save MMLIn"), ".",tr("MML files (*.mml)"));
- if (!fileName.isEmpty()) {
- guiManager->saveMmlInFile(fileName);
- }
-}
-
-
-//--------------- browseLml ---------------------------------
-void MonitoringDialog::browseLml() {
- int r=QMessageBox::warning(this,tr("Changing Lml"),tr("Changing lml will reload simulation.\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
- if (r == QMessageBox::Ok) {
- QString fileName = QFileDialog::getOpenFileName(this,tr("Open Lml"), ".",tr("LML files (*.lml)"));
- if (!fileName.isEmpty()) {
- ui.lmlLineEdit->setText(fileName);
- guiManager->updateLml(fileName);
- guiManager->reload();
- }
- }
-}
-
-//--------------- browsePml ---------------------------------
-void MonitoringDialog::browsePml() {
- int r=QMessageBox::warning(this,tr("Changing Pml"),tr("Changing pml will reload simulation.\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
- if (r == QMessageBox::Ok) {
- QString fileName = QFileDialog::getOpenFileName(this,tr("Open Pml"), ".",tr("PML files (*.pml)"));
- if (!fileName.isEmpty()) {
- ui.pmlLineEdit->setText(fileName);
- guiManager->updatePml(fileName);
- guiManager->reload();
- }
- }
-}
-
-//--------------- simulateOneStep ---------------------------------
-void MonitoringDialog::simulateOneStep() {
- guiManager->simulateOneStep();
-}
-
-//--------------- pause ---------------------------------
-void MonitoringDialog::pause() {
- guiManager->pause();
-}
-
-//--------------- rewind ---------------------------------
-void MonitoringDialog::rewind() {
- int r=QMessageBox::warning(this,tr("Rewind Simulation"),tr("Rewind simulation?\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
- if (r == QMessageBox::Ok) {
- guiManager->rewind();
- }
-}
-
-//--------------- simulate() ---------------------------------
-void MonitoringDialog::simulate() {
- guiManager->simulate();
-}
-
-
-
-//--------------- updateAll ---------------------------------
-void MonitoringDialog::updateAll() {
- if (guiManager->getMonitoringManager()) {
-
- enableButtons(true);
-
- ui.monitorsTab->setEnabled(true);
-
- updateSimulation();
- updateMonitors();
- updateSimulatorWidget();
- // enable stopping criteria tab only if monitoring manager is interactive
- if (dynamic_cast<InteractiveMonitoringManager*>(guiManager->getMonitoringManager())) {
- ui.sCriteriaTab->setEnabled(true);
- updateStoppingCriteria();
- }
- } else { // no mml loaded
-
- enableButtons(false);
-
- ui.monitorsTab->setEnabled(false);
- ui.sCriteriaTab->setEnabled(false);
- // deleting simulator widget if exists
- QWidget * simulatorWidget = ui.monitoringTabs->widget(3);
- if (simulatorWidget != NULL) {
- ui.monitoringTabs->removeTab(ui.monitoringTabs->indexOf(simulatorWidget));
- delete simulatorWidget;
- }
- }
-}
-
-//--------------- updateMonitors ---------------------------------
-void MonitoringDialog::updateMonitors() {
- ui.monitorsTable->clearContents();
- ui.monitorsTable->setSortingEnabled(false);
- ui.monitorsTable->setRowCount(guiManager->getMonitoringManager()->numberOfMonitor());
-
- for (unsigned int i = 0; i < guiManager->getMonitoringManager()->numberOfMonitor(); i++) {
- // get current monitor
- Monitor* currentMonitor = guiManager->getMonitoringManager()->getMonitor(i);
-
- // get type of current monitor
- ui.monitorsTable->setItem(i, 0, new QTableWidgetItem(currentMonitor->getTypeName().c_str()));
-
- // get target of current monitor
- ui.monitorsTable->setItem(i, 1, new QTableWidgetItem((currentMonitor->getTargetName().c_str())));
-
- // get startAt of current monitor
- QString s;
- ui.monitorsTable->setItem(i, 2, new QTableWidgetItem(s.setNum(currentMonitor->getStartAt())));
-
- // get stopAt of current monitor
- QString s2;
- ui.monitorsTable->setItem(i, 3, new QTableWidgetItem(s2.setNum(currentMonitor->getStopAt())));
-
- // get reference of current monitor
- ui.monitorsTable->setItem(i, 4, new QTableWidgetItem(currentMonitor->getReferenceName().c_str()));
-
- }
- emit monitorsChanged();
-}
-
-//--------------- updateSimulation ---------------------------------
-void MonitoringDialog::updateSimulation() {
- QString s;
- ui.dtLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getDt()));
- ui.refreshLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getRefresh()));
- ui.pmlLineEdit->setText(tr(guiManager->getMonitoringManager()->getPmlFileName().c_str()));
- ui.lmlLineEdit->setText(tr(guiManager->getMonitoringManager()->getLmlFileName().c_str()));
- ui.mmlInLineEdit->setText(tr(guiManager->getMonitoringManager()->getMmlFileName().c_str()));
- ui.timeLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getCurrentTime()));
- ui.averageFpsLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getCurrentStep()/guiManager->getMonitoringManager()->getComputingTime()));
- ui.currentFpsLineEdit->setText(s.setNum(1/guiManager->getMonitoringManager()->getStepComputingTime()));
-}
-
-//--------------- updateStoppingCriteria ---------------------------------
-void MonitoringDialog::updateStoppingCriteria() {
- ui.sCriteriaTreeWidget->clear();
-
- InteractiveMonitoringManager* imm=(InteractiveMonitoringManager*)(guiManager->getMonitoringManager());
- if (imm->getStoppingCriterion()) {
- QTreeWidgetItem* topItem=createItem(imm->getStoppingCriterion(),NULL);
- ui.sCriteriaTreeWidget->addTopLevelItem(topItem);
- }
-
-
-}
-
-//--------------- updateSimulatorWidget ---------------------------------
-void MonitoringDialog::updateSimulatorWidget() {
- // deleting simulator widget if exists
- QWidget * simulatorWidget = ui.monitoringTabs->widget(3);
- if (simulatorWidget != NULL) {
- ui.monitoringTabs->removeTab(ui.monitoringTabs->indexOf(simulatorWidget));
- delete simulatorWidget;
- }
-
-#ifdef MML_GENERATE_GUI
- simulatorWidget=guiManager->getMonitoringManager()->getSimulator()->getWidget();
- if (simulatorWidget != NULL) {
- connect(simulatorWidget,SIGNAL(reload()),guiManager,SLOT(reload()));
- ui.monitoringTabs->addTab(simulatorWidget,tr("Simulator"));
- }
-#endif
-}
-
-
-//--------------- createItem ---------------------------------
-QTreeWidgetItem* MonitoringDialog::createItem(StoppingCriterion* sc,QTreeWidgetItem* parent) {
- QTreeWidgetItem* item=new QTreeWidgetItem(parent);
- item->setText(0,tr(sc->getName().c_str()));
- if (sc->getNumberOfChildren()<0) {
- item->setText(1,tr(((Criterion*)sc)->getMethodString().c_str()));
- item->setText(2,tr(((Criterion*)sc)->scopeToString().c_str()));
- item->setText(2,tr(((Criterion*)sc)->scopeToString().c_str()));
- } else {
-
- }
- for (int i = 0; i < sc->getNumberOfChildren(); i++) {
- item->addChild(createItem(sc->getChild(i),item));
- }
- return item;
-}
-
-//--------------- getMmlInFileName ---------------------------------
-QString MonitoringDialog::getMmlInFileName() {
- return ui.mmlInLineEdit->text();
-}
-
-//--------------- dtModified ---------------------------------
-void MonitoringDialog::dtModified() {
- guiManager->updateDt(ui.dtLineEdit->text().toDouble());
-}
-
-//--------------- refreshModified ---------------------------------
-void MonitoringDialog::refreshModified() {
- guiManager->updateRefresh(ui.refreshLineEdit->text().toDouble());
-}
-
-QTableWidget* MonitoringDialog::getMonitorsTableWidget() {
- return ui.monitorsTable;
-}
-
diff --git a/modeling/libraries/mml/applications/gui/MonitoringDialog.h b/modeling/libraries/mml/applications/gui/MonitoringDialog.h
deleted file mode 100644
index 442e6bf..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringDialog.h
+++ /dev/null
@@ -1,128 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef MONITORINGDIALOG_H
-#define MONITORINGDIALOG_H
-
-#include "MMLMonitoringGUIAPI.h"
-
-#include <QDialog>
-
-#include "ui_MonitoringDialog.h"
-
-class MonitoringGuiManager;
-
-class StoppingCriterion;
-
-/**
- * @ingroup group_cepmodeling_libraries_mml
- *
- * @brief
- * TODO Comment class here
- *
- **/
-class /* needed if you monitoringgui is compiled as shared: MML_MONITORING_GUI_API*/ MonitoringDialog : public QDialog {
- Q_OBJECT
-
-public:
- /**Default Constructor*/
- MonitoringDialog(MonitoringGuiManager* guiManager, QWidget* parent = 0);
- /**Destructor*/
- virtual ~MonitoringDialog();
-
- /// initialize dialog
- void init();
-
- /// update all tabs
- void updateAll();
- /// update monitors tab
- void updateMonitors();
- /// update stopping criteria tab
- void updateStoppingCriteria();
- /// update simulation tab
- void updateSimulation();
- /// update simulator specific widget
- void updateSimulatorWidget();
- /// get MmlIn file name
- QString getMmlInFileName();
- /// get the monitors table
- QTableWidget * getMonitorsTableWidget();
-
-
-
-public slots:
-
- /// Slot called when Browse MmlIn file is clicked
- void browseMmlIn();
- /// Slot called when save MmlOut file is clicked
- void saveMmlOut();
- /// Slot called when save as csv file is clicked
- void saveCsv();
- /// Slot called when save MmlIn file is clicked
- void saveMmlIn();
- /// Slot called when Browse Pml file is clicked
- void browsePml();
- /// Slot called when Browse Lml file is clicked
- void browseLml();
- /// Slot called after dt editing
- void dtModified();
- /// Slot called after refresh editing
- void refreshModified();
-
- /** do one step of simulation
- * @return true only if the step was done
- */
- /// Slot called when the button Pause is clicked
- void pause();
- /// Slot called when the button Play is clicked
- void simulate();
- /// Slot called when the next step is clicked
- void simulateOneStep();
- /// Slot called when the button Rewind is clicked
- void rewind();
-
-signals:
- /// emitted
- void monitorsChanged();
-
-
-private:
- /// the ui dialog designed in qtdesigner
- Ui::MonitoringDialog ui;
-
- /// the monitoring manager
- MonitoringGuiManager* guiManager;
-
- /// the initial bg color
- QColor bgColor;
-
- /// set the rew,play,pause,step buttons enable or not
- void enableButtons(bool enable);
-
- ///
- QTreeWidgetItem* createItem(StoppingCriterion* sc,QTreeWidgetItem* parent);
-};
-
-#endif // MONITORINGDIALOG_H
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/gui/MonitoringDialog.ui b/modeling/libraries/mml/applications/gui/MonitoringDialog.ui
deleted file mode 100644
index 9f72020..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringDialog.ui
+++ /dev/null
@@ -1,744 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>MonitoringDialog</class>
- <widget class="QWidget" name="MonitoringDialog">
- <property name="enabled">
- <bool>true</bool>
- </property>
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>706</width>
- <height>768</height>
- </rect>
- </property>
- <property name="cursor">
- <cursorShape>ArrowCursor</cursorShape>
- </property>
- <property name="mouseTracking">
- <bool>false</bool>
- </property>
- <property name="focusPolicy">
- <enum>Qt::NoFocus</enum>
- </property>
- <property name="windowTitle">
- <string>Simulation</string>
- </property>
- <layout class="QGridLayout">
- <property name="margin">
- <number>0</number>
- </property>
- <property name="spacing">
- <number>0</number>
- </property>
- <item row="0" column="0">
- <widget class="QFrame" name="frame">
- <property name="frameShape">
- <enum>QFrame::NoFrame</enum>
- </property>
- <property name="frameShadow">
- <enum>QFrame::Plain</enum>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout_4">
- <item>
- <widget class="QTabWidget" name="monitoringTabs">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="currentIndex">
- <number>0</number>
- </property>
- <widget class="QWidget" name="simulationTab">
- <attribute name="title">
- <string>Simulation</string>
- </attribute>
- <layout class="QVBoxLayout" name="verticalLayout">
- <item>
- <layout class="QGridLayout" name="gridLayout_1">
- <item row="1" column="0">
- <widget class="QLabel" name="label_2">
- <property name="text">
- <string>dt:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="2">
- <widget class="QLabel" name="label_3">
- <property name="text">
- <string>refresh dt:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="3">
- <widget class="QLineEdit" name="refreshLineEdit"/>
- </item>
- <item row="2" column="0">
- <widget class="QLabel" name="label_6">
- <property name="text">
- <string>time:</string>
- </property>
- </widget>
- </item>
- <item row="2" column="2">
- <widget class="QLabel" name="label_8">
- <property name="text">
- <string>current fps:</string>
- </property>
- </widget>
- </item>
- <item row="2" column="1">
- <widget class="QLineEdit" name="timeLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="1" column="1">
- <widget class="QLineEdit" name="dtLineEdit"/>
- </item>
- <item row="3" column="2">
- <widget class="QLabel" name="label_9">
- <property name="text">
- <string>average fps:</string>
- </property>
- </widget>
- </item>
- <item row="3" column="3">
- <widget class="QLineEdit" name="averageFpsLineEdit">
- <property name="palette">
- <palette>
- <active>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </active>
- <inactive>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </inactive>
- <disabled>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </disabled>
- </palette>
- </property>
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="2" column="3">
- <widget class="QLineEdit" name="currentFpsLineEdit">
- <property name="palette">
- <palette>
- <active>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </active>
- <inactive>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </inactive>
- <disabled>
- <colorrole role="BrightText">
- <brush brushstyle="SolidPattern">
- <color alpha="255">
- <red>131</red>
- <green>255</green>
- <blue>152</blue>
- </color>
- </brush>
- </colorrole>
- </disabled>
- </palette>
- </property>
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <spacer name="verticalSpacer_2">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>37</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <layout class="QGridLayout" name="gridLayout_2">
- <item row="0" column="0">
- <widget class="QLabel" name="label_4">
- <property name="text">
- <string>pml:</string>
- </property>
- </widget>
- </item>
- <item row="0" column="1">
- <widget class="QLineEdit" name="pmlLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="0" column="2">
- <widget class="QPushButton" name="pmlBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- <item row="1" column="0">
- <widget class="QLabel" name="label_5">
- <property name="text">
- <string>lml:</string>
- </property>
- </widget>
- </item>
- <item row="1" column="1">
- <widget class="QLineEdit" name="lmlLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item row="1" column="2">
- <widget class="QPushButton" name="lmlBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <spacer name="verticalSpacer_3">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>36</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </widget>
- <widget class="QWidget" name="monitorsTab">
- <attribute name="title">
- <string>Monitors</string>
- </attribute>
- <layout class="QHBoxLayout" name="horizontalLayout_6">
- <item>
- <widget class="QTableWidget" name="monitorsTable">
- <property name="autoScroll">
- <bool>true</bool>
- </property>
- <property name="editTriggers">
- <set>QAbstractItemView::NoEditTriggers</set>
- </property>
- <property name="selectionBehavior">
- <enum>QAbstractItemView::SelectRows</enum>
- </property>
- <property name="textElideMode">
- <enum>Qt::ElideRight</enum>
- </property>
- <property name="showGrid">
- <bool>false</bool>
- </property>
- <property name="sortingEnabled">
- <bool>true</bool>
- </property>
- <property name="columnCount">
- <number>5</number>
- </property>
- <attribute name="horizontalHeaderStretchLastSection">
- <bool>true</bool>
- </attribute>
- <column>
- <property name="text">
- <string>Type</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Target</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Start At</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Stop At</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Reference</string>
- </property>
- </column>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_2">
- <item>
- <widget class="QPushButton" name="monitorsAddPushButton">
- <property name="text">
- <string>Add</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_5">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="monitorsEditPushButton">
- <property name="text">
- <string>Edit</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="monitorsRemovePushButton">
- <property name="text">
- <string>Remove</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_4">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_6">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_7">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- <widget class="QWidget" name="sCriteriaTab">
- <attribute name="title">
- <string>Stopping Criteria</string>
- </attribute>
- <layout class="QHBoxLayout" name="horizontalLayout_7">
- <item>
- <widget class="QTreeWidget" name="sCriteriaTreeWidget">
- <property name="editTriggers">
- <set>QAbstractItemView::NoEditTriggers</set>
- </property>
- <property name="columnCount">
- <number>3</number>
- </property>
- <column>
- <property name="text">
- <string>Type</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Condition</string>
- </property>
- </column>
- <column>
- <property name="text">
- <string>Scope</string>
- </property>
- </column>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_3">
- <item>
- <widget class="QPushButton" name="sCriteriaAddpushButton">
- <property name="text">
- <string>Add</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_8">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="sCriteriaEditPushButton">
- <property name="text">
- <string>Edit</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="sCriteriaRemovePushButton">
- <property name="text">
- <string>Remove</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="verticalSpacer_9">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_10">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <spacer name="verticalSpacer_11">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </widget>
- </item>
- <item>
- <layout class="QVBoxLayout" name="verticalLayout_5">
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout_8">
- <item>
- <widget class="QLabel" name="label_7">
- <property name="text">
- <string>mml in:</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QLineEdit" name="mmlInLineEdit">
- <property name="readOnly">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="mmlInBrowsePushButton">
- <property name="text">
- <string>Browse</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <widget class="QPushButton" name="mmlInSavePushButton">
- <property name="text">
- <string>Save mml in</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <widget class="QPushButton" name="mmlOutSavePushButton">
- <property name="text">
- <string>Save mml out</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="csvSavePushButton">
- <property name="text">
- <string>Save output as .csv</string>
- </property>
- </widget>
- </item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout_9">
- <item>
- <widget class="QPushButton" name="rewindPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>rewind simulation</string>
- </property>
- <property name="whatsThis">
- <string>rewind simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_rew</normaloff>:/player_rew</iconset>
- </property>
- <property name="shortcut">
- <string>Ctrl+R</string>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- <property name="flat">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <spacer>
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeType">
- <enum>QSizePolicy::Preferred</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>150</width>
- <height>16</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="playPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>play simulation</string>
- </property>
- <property name="whatsThis">
- <string>play simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_play</normaloff>:/player_play</iconset>
- </property>
- <property name="shortcut">
- <string>P</string>
- </property>
- <property name="checkable">
- <bool>false</bool>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- <property name="default">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="playOneStepPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>play one step</string>
- </property>
- <property name="whatsThis">
- <string>play one step</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_end</normaloff>:/player_end</iconset>
- </property>
- <property name="shortcut">
- <string>S</string>
- </property>
- <property name="checkable">
- <bool>false</bool>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QPushButton" name="pausePushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="cursor">
- <cursorShape>PointingHandCursor</cursorShape>
- </property>
- <property name="toolTip">
- <string>pause simulation</string>
- </property>
- <property name="whatsThis">
- <string>pause simulation</string>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset>
- <normaloff>:/player_pause</normaloff>:/player_pause</iconset>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </item>
- </layout>
- </widget>
- <layoutdefault spacing="6" margin="11"/>
- <tabstops>
- <tabstop>monitoringTabs</tabstop>
- <tabstop>rewindPushButton</tabstop>
- <tabstop>playPushButton</tabstop>
- <tabstop>playOneStepPushButton</tabstop>
- <tabstop>pausePushButton</tabstop>
- </tabstops>
- <resources/>
- <connections/>
-</ui>
diff --git a/modeling/libraries/mml/applications/gui/MonitoringDriver.cpp b/modeling/libraries/mml/applications/gui/MonitoringDriver.cpp
deleted file mode 100644
index 27e1e2b..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringDriver.cpp
+++ /dev/null
@@ -1,82 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "MonitoringDriver.h"
-
-#include <qapplication.h>
-#include <qcursor.h>
-#include <limits>
-
-//--------------- Constructor ---------------------------------
-MonitoringDriver::MonitoringDriver(MonitoringGuiManager* guiManager): QObject() {
- this->guiManager=guiManager;
- timer = NULL; // not started yet
-}
-
-//--------------- Constructor ---------------------------------
-MonitoringDriver::~MonitoringDriver() {
- stopTimer();
- delete timer;
- timer = NULL;
-}
-
-//--------------- Constructor ---------------------------------
-void MonitoringDriver::init() {
- // start the timer
- timer = new QTimer ( this );
-
- // connect the timer tick signal to play()
- connect ( timer, SIGNAL ( timeout() ), this, SLOT ( play() ) );
-
-}
-
-//--------------- Constructor ---------------------------------
-void MonitoringDriver::play() {
- if ( !timer->isActive() ) {
- // timer wasn't active, action to be done = launch the timer
- startTimer();
- } else {
- // timer is active, action to be done = play one step
- emit doOneStep();
- }
-}
-
-//--------------- Constructor ---------------------------------
-void MonitoringDriver::startTimer() {
- timer->start();
-}
-
-//--------------- Constructor ---------------------------------
-void MonitoringDriver::stopTimer() {
- timer->stop();
-}
-
-//--------------- Constructor ---------------------------------
-bool MonitoringDriver::isTimerActive() {
- return timer->isActive();
-}
-
-
-
diff --git a/modeling/libraries/mml/applications/gui/MonitoringDriver.h b/modeling/libraries/mml/applications/gui/MonitoringDriver.h
deleted file mode 100644
index 4362bb8..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringDriver.h
+++ /dev/null
@@ -1,85 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef MONITORINGSIMULATIONDRIVER_H
-#define MONITORINGSIMULATIONDRIVER_H
-
-#include <QObject>
-#include <qtimer.h>
-
-#include "MonitoringGuiManager.h"
-
-/**
- * @ingroup group_cepmodeling_libraries_mml
- *
- * @brief
- * TODO Comment class here
- *
- **/
-class MonitoringDriver : public QObject {
-
- Q_OBJECT
-
-public:
-
- /// Constructor
- MonitoringDriver (MonitoringGuiManager* guiManager);
-
- /// Destructor
- virtual ~MonitoringDriver();
-
- void init();
-
- /// starts the timer that will repeatedly call play and emit doOneStep
- void startTimer();
-
- /// stop the timer
- void stopTimer();
-
- /// is the timer currently running
- bool isTimerActive();
-
-signals:
-
- /// signal call when one step is to be performed
- void doOneStep();
-
-public slots:
-
- /// Slot called when at each timer tick (i.e. after the same interval of time)
- void play();
-
-private:
- /// the monitoring manager
- MonitoringGuiManager* guiManager;
-
- /// the simulation timer
- QTimer *timer;
-
-
-
-};
-
-#endif
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/gui/MonitoringGuiManager.cpp b/modeling/libraries/mml/applications/gui/MonitoringGuiManager.cpp
deleted file mode 100644
index 2337419..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringGuiManager.cpp
+++ /dev/null
@@ -1,236 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "MonitoringGuiManager.h"
-
-#include <QtGui>
-
-#include "MonitoringDialog.h"
-#include "MonitoringDriver.h"
-
-//--------------- Constructor ---------------------------------
-MonitoringGuiManager::MonitoringGuiManager() {
- Q_INIT_RESOURCE(MonitoringGuiIcons);
- driver=new MonitoringDriver(this);
- dialog=new MonitoringDialog(this);
- monitoringManager=NULL;
- driver->init();
- dialog->init();
- dialog->show();
- lastRefreshTime=0;
-}
-
-//--------------- Destructor ---------------------------------
-MonitoringGuiManager::~MonitoringGuiManager() {
- if (driver) {
- delete driver;
- driver = NULL;
- }
- if (dialog) {
- delete dialog;
- dialog = NULL;
- }
- if (monitoringManager) {
- delete monitoringManager;
- monitoringManager = NULL;
- }
- Q_CLEANUP_RESOURCE(MonitoringGuiIcons);
-}
-
-//--------------- getDialog ---------------------------------
-MonitoringDialog* MonitoringGuiManager::getDialog() {
- return dialog;
-}
-
-//--------------- getDriver ---------------------------------
-MonitoringDriver* MonitoringGuiManager::getDriver() {
- return driver;
-}
-
-//--------------- getMonitoringManager ---------------------------------
-MonitoringManager* MonitoringGuiManager::getMonitoringManager() {
- return monitoringManager;
-}
-
-
-//--------------- doOneStep ---------------------------------
-bool MonitoringGuiManager::doOneStep() {
- if (monitoringManager->checkStop()) {
- QMessageBox::information(dialog,tr("Simulation finished"),tr("The simulation is finished (Stopping Criterion reached)."),QMessageBox::Ok);
- driver->stopTimer();
- return false;
- } else {
-
- // As this method is called by a timer, it could happen that the motor
- // has not finished one step of computation when the timer starts
- // the method again. This results in a strange state.
- // waitingForFinish act as a flag to say "wait, wait, we are
- // already computing a step, we can't do many at the same time,
- // take your chance next time".
- // That allows the timer to be regulated by the motor computation time.
- static bool waitingToFinish = false;
-
- if (waitingToFinish) {
- return false; // bye bye, we are too busy at the moment, we haven't done anything
- }
-
- waitingToFinish = true;
-
- // if t is ok, play it
-
- // update cursor
- QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
-
- // show the progress
- //TODO
-
- // do simulation steps until the next refresh time is reached
- monitoringManager->doMove();
-
- // update cursor
- QApplication::restoreOverrideCursor();
-
- //emit changed only if we have to refresh
- if (monitoringManager->getCurrentTime()>=lastRefreshTime+monitoringManager->getRefresh()) {
- emit changed();
- lastRefreshTime=monitoringManager->getCurrentTime();
- }
- // release the flag, so that next time this method is called,
- // a new step could be computed
- waitingToFinish = false;
- // update view
- dialog->updateSimulation();;
- return true; // bye bye, we have done one step
- }
-}
-
-//--------------- simulate ---------------------------------
-void MonitoringGuiManager::simulate() {
- if (!driver->isTimerActive()) {
- // timer wasn't active, action to be done = launch the timer
- driver->startTimer();
- } else {
- // timer is active, action to be done = play one step
- doOneStep();
- }
-}
-
-//--------------- simulateOneStep ---------------------------------
-void MonitoringGuiManager::simulateOneStep() {
- // force one step to be done
- if (!monitoringManager->checkStop()) {
- while (!doOneStep())
- ;
- } else {
- doOneStep(); // just to have the message box
- }
-}
-
-//--------------- pause ---------------------------------
-void MonitoringGuiManager::pause() {
- driver->stopTimer();
-}
-
-//--------------- rewind ---------------------------------
-void MonitoringGuiManager::rewind() {
- pause();
- monitoringManager->rewind();
- lastRefreshTime=0;
- emit changed();
- dialog->updateSimulation();
-}
-
-//--------------- reload ---------------------------------
-void MonitoringGuiManager::reload() {
- pause();
- monitoringManager->reload(false);
- lastRefreshTime=0;
- emit reconnectPml();
- dialog->updateAll();
-}
-
-
-
-//--------------- loadMmlInFile ---------------------------------
-bool MonitoringGuiManager::loadMmlInFile(QString fileName) {
- if (monitoringManager) {
- delete monitoringManager;
- }
-
- monitoringManager=MonitoringManagerFactory::createManager(fileName.toStdString().c_str());
- monitoringManager->init();
- dialog->updateAll();
-
- // TODO add case when loading fails (wrong mml file)
-
- return true;
-}
-
-//--------------- saveMmlOutFile ---------------------------------
-bool MonitoringGuiManager::saveMmlOutFile(QString fileName) {
- monitoringManager->writeOutput(fileName.toUtf8().constData());
- return true;
-}
-
-//--------------- saveCsvFile ---------------------------------
-bool MonitoringGuiManager::saveCsvFile(QString fileName) {
- monitoringManager->writeCsv(fileName.toUtf8().constData());
- return true;
-}
-
-
-//--------------- saveMmlInFile ---------------------------------
-bool MonitoringGuiManager::saveMmlInFile(QString fileName) {
- monitoringManager->saveMmlIn(fileName.toUtf8().constData());
- return true;
-}
-
-
-//--------------- updateDt ---------------------------------
-void MonitoringGuiManager::updateDt(double dt) {
- monitoringManager->setDt(dt);
-}
-
-//--------------- updateRefresh ---------------------------------
-void MonitoringGuiManager::updateRefresh(double refresh) {
- monitoringManager->setRefresh(refresh);
-}
-
-//--------------- updatePml ---------------------------------
-void MonitoringGuiManager::updatePml(QString fileName) {
- monitoringManager->setPmlFileName(fileName.toUtf8().constData());
-}
-
-//--------------- updateLml ---------------------------------
-void MonitoringGuiManager::updateLml(QString fileName) {
- monitoringManager->setLmlFileName(fileName.toUtf8().constData());
-}
-
-
-
-
-
-
-
diff --git a/modeling/libraries/mml/applications/gui/MonitoringGuiManager.h b/modeling/libraries/mml/applications/gui/MonitoringGuiManager.h
deleted file mode 100644
index 01876b7..0000000
--- a/modeling/libraries/mml/applications/gui/MonitoringGuiManager.h
+++ /dev/null
@@ -1,120 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef MONITORINGGUIMANAGER_H
-#define MONITORINGGUIMANAGER_H
-
-#include "MMLMonitoringGUIAPI.h"
-
-#include <QObject>
-
-// Monitor includes
-#include "MonitoringManagerFactory.h"
-
-class MonitoringDialog;
-class MonitoringDriver;
-/**
- * @ingroup group_cepmodeling_libraries_mml
- *
- * @brief
- * A GUI to manipulate mml documents
- *
- **/
-class /* needed if you monitoringgui is compiled as shared: MML_MONITORING_GUI_API*/ MonitoringGuiManager : public QObject {
-
- Q_OBJECT
-
-public:
-
- /// constructor
- MonitoringGuiManager();
-
- /// destructor
- virtual ~MonitoringGuiManager();
-
- /// get dialog
- MonitoringDialog* getDialog();
- /// get driver
- MonitoringDriver* getDriver();
- /// get Monitoring Manager
- MonitoringManager* getMonitoringManager();
-
- /// Load a MMLIn file
- bool loadMmlInFile(QString fileName);
- /// Save MMLout file
- bool saveMmlOutFile(QString fileName);
- /// Save MMLIn file
- bool saveMmlInFile(QString fileName);
- /// Save csv file
- bool saveCsvFile(QString fileName);
-
- ///update dt
- void updateDt(double dt);
- ///update refresh
- void updateRefresh(double refresh);
- /// update pml
- void updatePml(QString fileName);
- /// update lml
- void updateLml(QString fileName);
-
- /// pause simulation
- void pause();
- /// do simulation lopp
- void simulate();
- /// do one step of simulation
- void simulateOneStep();
- /// rewind simulation
- void rewind();
-
-public slots:
-
- /** do one step of simulation
- * @return true only if the step was done
- */
- bool doOneStep();
- /// reload simulation with current parameters
- void reload();
-
-signals:
- /// emitted when one step of simulation is done, there was changes, so maybe there are some display to update
- void changed();
- ///
- void reconnectPml();
-
-private :
-
- /// the dialog box
- MonitoringDialog* dialog;
- /// the simulation driver
- MonitoringDriver* driver;
- /// Monitoring manager
- MonitoringManager* monitoringManager;
- /// last refresh time
- double lastRefreshTime;
-
-
-};
-
-#endif // MONITORINGGUIMANAGER_H
diff --git a/modeling/libraries/mml/applications/gui/resources/translate/translate_en.ts b/modeling/libraries/mml/applications/gui/resources/translate/translate_en.ts
deleted file mode 100644
index 64988ab..0000000
--- a/modeling/libraries/mml/applications/gui/resources/translate/translate_en.ts
+++ /dev/null
@@ -1,284 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
-<context>
- <name>MonitoringDialog</name>
- <message>
- <location filename="../../MonitoringDialog.ui" line="26"/>
- <location filename="../../MonitoringDialog.ui" line="57"/>
- <source>Simulation</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="65"/>
- <source>dt:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="72"/>
- <source>refresh dt:</source>
- <translation>dt rafraichi:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="82"/>
- <source>time:</source>
- <translation>temps:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="89"/>
- <source>current fps:</source>
- <translation>fps courante:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="106"/>
- <source>average fps:</source>
- <translation>fps moyenne:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="218"/>
- <source>pml:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="232"/>
- <location filename="../../MonitoringDialog.ui" line="253"/>
- <location filename="../../MonitoringDialog.ui" line="543"/>
- <source>Browse</source>
- <translation>Naviguer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="239"/>
- <source>lml:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="276"/>
- <source>Monitors</source>
- <translation>Moniteurs</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="307"/>
- <location filename="../../MonitoringDialog.ui" line="426"/>
- <source>Type</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="312"/>
- <source>Target</source>
- <translation>Cible</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="317"/>
- <source>Start At</source>
- <translation>Démarrer à</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="322"/>
- <source>Stop At</source>
- <translation>Stopper à</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="327"/>
- <source>Reference</source>
- <translation>Référence</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="337"/>
- <location filename="../../MonitoringDialog.ui" line="446"/>
- <source>Add</source>
- <translation>Ajouter</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="357"/>
- <location filename="../../MonitoringDialog.ui" line="466"/>
- <source>Edit</source>
- <translation>Editer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="364"/>
- <location filename="../../MonitoringDialog.ui" line="473"/>
- <source>Remove</source>
- <translation>Retirer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="413"/>
- <source>Stopping Criteria</source>
- <translation>Critère d'arrêt</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="431"/>
- <source>Condition</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="436"/>
- <source>Scope</source>
- <translation>Etendue</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="529"/>
- <source>mml in:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="552"/>
- <source>Save mml in</source>
- <translation>Sauver mml in</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="561"/>
- <source>Save mml out</source>
- <translation>Sauver mml out</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="568"/>
- <source>Save output as .csv</source>
- <translation>Sauver sortie comme .csv</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="586"/>
- <location filename="../../MonitoringDialog.ui" line="589"/>
- <source>rewind simulation</source>
- <translation>rembobiner simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="599"/>
- <source>Ctrl+R</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="637"/>
- <location filename="../../MonitoringDialog.ui" line="640"/>
- <source>play simulation</source>
- <translation>jouer simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="650"/>
- <source>P</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="675"/>
- <location filename="../../MonitoringDialog.ui" line="678"/>
- <source>play one step</source>
- <translation>jouer une étape</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="688"/>
- <source>S</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="710"/>
- <location filename="../../MonitoringDialog.ui" line="713"/>
- <source>pause simulation</source>
- <translation>simulation en pause</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="128"/>
- <source>Open MMLIn</source>
- <translation>Ouvrir MMLIn</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="128"/>
- <location filename="../../MonitoringDialog.cpp" line="138"/>
- <location filename="../../MonitoringDialog.cpp" line="156"/>
- <source>MML files (*.mml)</source>
- <translation>Fichiers MML (*.mml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="138"/>
- <source>Save MMLOut</source>
- <translation>Sauver MMLOut</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="147"/>
- <source>Save as Csv</source>
- <translation>Sauver comme Csv</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="147"/>
- <source>CSV files (*.csv)</source>
- <translation>Fichiers CSV (*.csv)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="156"/>
- <source>Save MMLIn</source>
- <translation>Sauver MMLIn</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="166"/>
- <source>Changing Lml</source>
- <translation>Changement Lml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="166"/>
- <source>Changing lml will reload simulation.
- Not saved data will be lost.</source>
- <translation>Le changement de lml rechargera la simulation.
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="168"/>
- <source>Open Lml</source>
- <translation>Ouvrir Lml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="168"/>
- <source>LML files (*.lml)</source>
- <translation>Fichiers LML (*.lml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="180"/>
- <source>Changing Pml</source>
- <translation>Changement Pml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="180"/>
- <source>Changing pml will reload simulation.
- Not saved data will be lost.</source>
- <translation>Le changement de pml rechargera la simulation.
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="182"/>
- <source>Open Pml</source>
- <translation>Ouvrir Pml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="182"/>
- <source>PML files (*.pml)</source>
- <translation>Fichiers PML (*.pml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="206"/>
- <source>Rewind Simulation</source>
- <translation>Rembobiner la simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="206"/>
- <source>Rewind simulation?
- Not saved data will be lost.</source>
- <translation>Rembobiner la simulation ?
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="326"/>
- <source>Simulator</source>
- <translation>Simulateur</translation>
- </message>
-</context>
-<context>
- <name>MonitoringGuiManager</name>
- <message>
- <location filename="../../MonitoringGuiManager.cpp" line="90"/>
- <source>Simulation finished</source>
- <translation>Simulation Terminée</translation>
- </message>
- <message>
- <location filename="../../MonitoringGuiManager.cpp" line="90"/>
- <source>The simulation is finished (Stopping Criterion reached).</source>
- <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
- </message>
-</context>
-</TS>
diff --git a/modeling/libraries/mml/applications/gui/resources/translate/translate_fr.ts b/modeling/libraries/mml/applications/gui/resources/translate/translate_fr.ts
deleted file mode 100644
index 64988ab..0000000
--- a/modeling/libraries/mml/applications/gui/resources/translate/translate_fr.ts
+++ /dev/null
@@ -1,284 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
-<context>
- <name>MonitoringDialog</name>
- <message>
- <location filename="../../MonitoringDialog.ui" line="26"/>
- <location filename="../../MonitoringDialog.ui" line="57"/>
- <source>Simulation</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="65"/>
- <source>dt:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="72"/>
- <source>refresh dt:</source>
- <translation>dt rafraichi:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="82"/>
- <source>time:</source>
- <translation>temps:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="89"/>
- <source>current fps:</source>
- <translation>fps courante:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="106"/>
- <source>average fps:</source>
- <translation>fps moyenne:</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="218"/>
- <source>pml:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="232"/>
- <location filename="../../MonitoringDialog.ui" line="253"/>
- <location filename="../../MonitoringDialog.ui" line="543"/>
- <source>Browse</source>
- <translation>Naviguer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="239"/>
- <source>lml:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="276"/>
- <source>Monitors</source>
- <translation>Moniteurs</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="307"/>
- <location filename="../../MonitoringDialog.ui" line="426"/>
- <source>Type</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="312"/>
- <source>Target</source>
- <translation>Cible</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="317"/>
- <source>Start At</source>
- <translation>Démarrer à</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="322"/>
- <source>Stop At</source>
- <translation>Stopper à</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="327"/>
- <source>Reference</source>
- <translation>Référence</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="337"/>
- <location filename="../../MonitoringDialog.ui" line="446"/>
- <source>Add</source>
- <translation>Ajouter</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="357"/>
- <location filename="../../MonitoringDialog.ui" line="466"/>
- <source>Edit</source>
- <translation>Editer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="364"/>
- <location filename="../../MonitoringDialog.ui" line="473"/>
- <source>Remove</source>
- <translation>Retirer</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="413"/>
- <source>Stopping Criteria</source>
- <translation>Critère d'arrêt</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="431"/>
- <source>Condition</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="436"/>
- <source>Scope</source>
- <translation>Etendue</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="529"/>
- <source>mml in:</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="552"/>
- <source>Save mml in</source>
- <translation>Sauver mml in</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="561"/>
- <source>Save mml out</source>
- <translation>Sauver mml out</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="568"/>
- <source>Save output as .csv</source>
- <translation>Sauver sortie comme .csv</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="586"/>
- <location filename="../../MonitoringDialog.ui" line="589"/>
- <source>rewind simulation</source>
- <translation>rembobiner simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="599"/>
- <source>Ctrl+R</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="637"/>
- <location filename="../../MonitoringDialog.ui" line="640"/>
- <source>play simulation</source>
- <translation>jouer simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="650"/>
- <source>P</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="675"/>
- <location filename="../../MonitoringDialog.ui" line="678"/>
- <source>play one step</source>
- <translation>jouer une étape</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="688"/>
- <source>S</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.ui" line="710"/>
- <location filename="../../MonitoringDialog.ui" line="713"/>
- <source>pause simulation</source>
- <translation>simulation en pause</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="128"/>
- <source>Open MMLIn</source>
- <translation>Ouvrir MMLIn</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="128"/>
- <location filename="../../MonitoringDialog.cpp" line="138"/>
- <location filename="../../MonitoringDialog.cpp" line="156"/>
- <source>MML files (*.mml)</source>
- <translation>Fichiers MML (*.mml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="138"/>
- <source>Save MMLOut</source>
- <translation>Sauver MMLOut</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="147"/>
- <source>Save as Csv</source>
- <translation>Sauver comme Csv</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="147"/>
- <source>CSV files (*.csv)</source>
- <translation>Fichiers CSV (*.csv)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="156"/>
- <source>Save MMLIn</source>
- <translation>Sauver MMLIn</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="166"/>
- <source>Changing Lml</source>
- <translation>Changement Lml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="166"/>
- <source>Changing lml will reload simulation.
- Not saved data will be lost.</source>
- <translation>Le changement de lml rechargera la simulation.
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="168"/>
- <source>Open Lml</source>
- <translation>Ouvrir Lml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="168"/>
- <source>LML files (*.lml)</source>
- <translation>Fichiers LML (*.lml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="180"/>
- <source>Changing Pml</source>
- <translation>Changement Pml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="180"/>
- <source>Changing pml will reload simulation.
- Not saved data will be lost.</source>
- <translation>Le changement de pml rechargera la simulation.
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="182"/>
- <source>Open Pml</source>
- <translation>Ouvrir Pml</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="182"/>
- <source>PML files (*.pml)</source>
- <translation>Fichiers PML (*.pml)</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="206"/>
- <source>Rewind Simulation</source>
- <translation>Rembobiner la simulation</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="206"/>
- <source>Rewind simulation?
- Not saved data will be lost.</source>
- <translation>Rembobiner la simulation ?
-Les données non sauvées seront perdues.</translation>
- </message>
- <message>
- <location filename="../../MonitoringDialog.cpp" line="326"/>
- <source>Simulator</source>
- <translation>Simulateur</translation>
- </message>
-</context>
-<context>
- <name>MonitoringGuiManager</name>
- <message>
- <location filename="../../MonitoringGuiManager.cpp" line="90"/>
- <source>Simulation finished</source>
- <translation>Simulation Terminée</translation>
- </message>
- <message>
- <location filename="../../MonitoringGuiManager.cpp" line="90"/>
- <source>The simulation is finished (Stopping Criterion reached).</source>
- <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
- </message>
-</context>
-</TS>
diff --git a/modeling/libraries/mml/applications/paramExplorer/CMakeLists.txt b/modeling/libraries/mml/applications/paramExplorer/CMakeLists.txt
deleted file mode 100644
index e26e174..0000000
--- a/modeling/libraries/mml/applications/paramExplorer/CMakeLists.txt
+++ /dev/null
@@ -1,36 +0,0 @@
-project(paramExplorer)
-
-set(paramExplorer_LIBRARIES
- ${MML_LIBRARIES}
- monitoring
-)
-
-set(HEADERS
-)
-
-set(SRCS
- paramExplorer.cpp
- ${HEADERS}
-)
-
-if(MML_SOFA_SUPPORT)
- #FIXME Sofa support => fix sofa dependency properly
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
-endif(MML_SOFA_SUPPORT)
-
-include_directories(${MML_INCLUDE_DIRECTORIES})
-
-link_directories(${paramExplorer_link})
-
-add_executable(paramExplorer ${SRCS})
-
-target_link_libraries(paramExplorer ${paramExplorer_LIBRARIES})
-
-add_custom_target(paramExplorerBin ALL)
-
-add_dependencies(paramExplorer monitoring)
diff --git a/modeling/libraries/mml/applications/paramExplorer/paramExplorer.cpp b/modeling/libraries/mml/applications/paramExplorer/paramExplorer.cpp
deleted file mode 100644
index 6eb8213..0000000
--- a/modeling/libraries/mml/applications/paramExplorer/paramExplorer.cpp
+++ /dev/null
@@ -1,135 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <memory> // std::auto_ptr
-#include <iostream>
-#include <fstream>
-#include <map>
-
-#include "MonitorIn.hxx"
-#include "manager/MonitoringManager.h"
-#include "manager/MonitoringManagerFactory.h"
-
-#include "MultiComponent.h"
-
-#ifdef MML_GENERATE_GUI
-#include <QApplication>
-#endif
-#include <map>
-
-using namespace std;
-
-int
-main (int argc, char* argv[]) {
- if (argc != 2) {
- cout << "usage: " << argv[0] << " file.txt" << endl;
- cout << "file.txt should a text file with:" << endl;
- cout << "file.mml" << endl;
- cout << "out" << endl;
- cout << "parameterToExplore valMin valMax step" << endl;
- cout << "parameter1 val1" << endl;
- cout << "parameter2 val2" << endl;
- cout << "parameter3 val3" << endl;
- cout << "etc..." << endl;
-
- exit(0);
- }
-
- try {
-#ifdef MML_GENERATE_GUI
- QApplication app(argc, argv);
-#endif
-
- std::string mmlFile;
- std::string parameterToExplore;
- std::string out;
- double valMin,valMax,step,current;
- std::map<std::string,std::string> parameters;
- ifstream file;
- ofstream outFile;
- std::string s1,s2;
- cout << "reading "<< argv[1] << endl;
- file.open(argv[1], ios::in);
- if (file.bad()) {
- cout << "reading "<< argv[1] << " failed" << endl;
- exit(1);
- }
- file >> mmlFile;
- cout << "mml file read" << endl;
- file >> out;
- cout << "output file read" << endl;
- file >> parameterToExplore;
- file >> valMin;
- current=valMin;
- file >> valMax;
- file >> step;
- cout << "Parameter to explore read" << endl;
- file >> s1;
- while (!file.eof()) {
- file >> s2;
- parameters.insert(std::pair<std::string,std::string>(s1,s2));
- file >> s1;
- }
- cout << "Parameters read" << endl;
-
- outFile.open(out.c_str(),ios::out);
-
- while(current<valMax) {
- cout << "Computation for " << parameterToExplore << " = " << current << endl;
- MonitoringManager* m=MonitoringManagerFactory::createManager(mmlFile.c_str());
- Properties* prop=m->getPml()->getExclusiveComponents()->getProperties();
- std::map<std::string, std::string>::iterator iter;
- for(iter=parameters.begin(); iter!=parameters.end(); iter++) {
- prop->set(iter->first,iter->second);
- }
- prop->set(parameterToExplore,current);
-
- if (m->init()) {
- m->doMove();
- while(!m->checkStop()) {
- m->doMove();
- }
- }
- cout << "Computation finished, exporting results to output file" << endl;
-
- outFile << parameterToExplore << ": " << current << std::endl;
- for (int i=0; i<m->numberOfMonitor(); i++) {
- outFile << "Monitor " << i << ": ";
- for(int j=0; j<m->getMonitor(i)->getNumberOfValues(); j++) {
- outFile<< m->getMonitor(i)->getValue(j) << " ";
- }
- outFile << endl;
- }
- m->end();
- current+=step;
- delete m;
- }
-
- } catch (const xml_schema::exception& e) {
- cerr << e << endl;
- return 1;
- }
-}
-
diff --git a/modeling/libraries/mml/applications/pml2mmlOut/CMakeLists.txt b/modeling/libraries/mml/applications/pml2mmlOut/CMakeLists.txt
deleted file mode 100644
index 021598e..0000000
--- a/modeling/libraries/mml/applications/pml2mmlOut/CMakeLists.txt
+++ /dev/null
@@ -1,41 +0,0 @@
-project(pml2mmlOut)
-
-set(pml2mmlOut_LIBRARIES
- ${MML_LIBRARIES}
- monitoring
-)
-
-set(HEADERS
-)
-
-set(SRCS
- pml2mmlOut.cpp
- ${HEADERS}
-)
-
-if(MML_SOFA_SUPPORT)
- #FIXME Sofa support => fix sofa dependency properly
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
-endif(MML_SOFA_SUPPORT)
-
-include_directories(${MML_INCLUDE_DIRECTORIES})
-
-link_directories(${CAMITK_LINK_DIRECTORIES})
-
-add_executable(pml2mmlOut ${SRCS})
-
-target_link_libraries(pml2mmlOut ${pml2mmlOut_LIBRARIES})
-
-add_custom_target(pml2mmlOutBin ALL)
-
-add_dependencies(pml2mmlOut monitoring)
-
-install(TARGETS pml2mmlOut
- RUNTIME DESTINATION bin
- COMPONENT pml2mmlOut
-)
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/pml2mmlOut/pml2mmlOut.cpp b/modeling/libraries/mml/applications/pml2mmlOut/pml2mmlOut.cpp
deleted file mode 100644
index ae4219f..0000000
--- a/modeling/libraries/mml/applications/pml2mmlOut/pml2mmlOut.cpp
+++ /dev/null
@@ -1,90 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <sstream>
-
-#include <pml/PhysicalModel.h>
-
-#include "MonitorOut.hxx"
-
-#ifdef MML_GENERATE_GUI
-#include <QApplication>
-#endif
-
-using namespace std;
-
-int
-main (int argc, char* argv[]) {
- if (argc != 2) {
- cerr << "usage: " << argv[0] << " file.pml" << endl;
- return 1;
- }
-
- try {
-#ifdef MML_GENERATE_GUI
- QApplication app(argc, argv);
-#endif
- PhysicalModel pml=PhysicalModel(argv[1]);
-
- ostringstream indexes;
- ostringstream data;
- double pos[3];
- for (int i =0; i<pml.getNumberOfAtoms(); i++) {
- Atom* a=(Atom*)(pml.getAtoms()->getStructure(i));
- indexes << a->getIndex() << " ";
- a->getPosition(pos);
- data << pos[0] << " " << pos[1] << " " << pos[2] << " ";
- }
-
- string filename=argv[1];
- string::size_type pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += ".mml";
- }
-
- mml::MonitoringOut mml(argv[1]);
- mml::TimeStep t =mml::TimeStep(1000000, "s");
- mml::Monitor monit =mml::Monitor(mml::TimeParameter(0.0,"s"),mml::TimeParameter(1000000.0,"s"),mml::MonitorType::Position,1,"");
- monit.data(data.str().c_str());
- monit.indexes(indexes.str().c_str());
- t.monitor().push_back(monit);
- mml::MonitoringOut::time_sequence& ts(mml.time());
- ts.push_back(t);
-
- xml_schema::namespace_infomap map;
- map[""].name = "";
- map[""].schema = "";
-
- ofstream ofs(filename.c_str());
- mml::monitoringOut(ofs, mml, map);
-
- } catch (const xml_schema::exception& e) {
- cerr << e << endl;
- return 1;
- }
-}
-
diff --git a/modeling/libraries/mml/applications/scn2pml/CMakeLists.txt b/modeling/libraries/mml/applications/scn2pml/CMakeLists.txt
deleted file mode 100644
index 8f819cf..0000000
--- a/modeling/libraries/mml/applications/scn2pml/CMakeLists.txt
+++ /dev/null
@@ -1,40 +0,0 @@
-project(scn2pml)
-
-set(scn2pml_LIBRARIES
- ${MML_LIBRARIES}
- monitoring
-)
-
-set(HEADERS
-)
-
-set(SRCS
- scn2pml.cpp
- ${HEADERS}
-)
-
-if(MML_SOFA_SUPPORT)
- #FIXME Sofa support => fix sofa dependency properly
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin)
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
- link_directories(${MML_SOFA_LIB_DIR})
-
- set(MML_SOFA_INCLUDE_DIR ${MML_SOFA_DIR}/include ${MML_SOFA_DIR}/modules ${MML_SOFA_DIR}/framework
- ${MML_SOFA_DIR}/extlibs/miniBoost ${MML_SOFA_DIR}/include/modules
- ${MML_SOFA_DIR}/include/framework ${MML_SOFA_DIR}/include/extlibs/miniBoost )
-endif(MML_SOFA_SUPPORT)
-
-include_directories(${MML_INCLUDE_DIRECTORIES} ${MML_SOFA_INCLUDE_DIR})
-
-link_directories(${scn2pml_link})
-
-add_executable(scn2pml ${SRCS})
-
-target_link_libraries(scn2pml ${scn2pml_LIBRARIES})
-
-add_custom_target(scn2pmlBin ALL)
-
-add_dependencies(scn2pml monitoring)
diff --git a/modeling/libraries/mml/applications/scn2pml/scn2pml.cpp b/modeling/libraries/mml/applications/scn2pml/scn2pml.cpp
deleted file mode 100644
index a459861..0000000
--- a/modeling/libraries/mml/applications/scn2pml/scn2pml.cpp
+++ /dev/null
@@ -1,63 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-
-#include "simulator/simulators/Sofa/SofaSimulator.h"
-
-#ifdef MML_GENERATE_GUI
-#include <QApplication>
-#endif
-
-using namespace std;
-
-int
-main (int argc, char* argv[]) {
- if (argc != 2) {
- cerr << "usage: " << argv[0] << " file.scn" << endl;
- return 1;
- }
-
- try {
-#ifdef MML_GENERATE_GUI
- QApplication app(argc, argv);
-#endif
- SofaSimulator* simul =new SofaSimulator(NULL,argv[1]);
-
- string pmlFileName=argv[1];
- string::size_type pLast = pmlFileName.rfind(".");
- if (pLast != string::npos) {
- pmlFileName.erase(pLast);
- pmlFileName += ".pml";
- }
-
- simul->createPml(argv[1],pmlFileName.c_str());
-
- } catch (const xml_schema::exception& e) {
- cerr << e << endl;
- return 1;
- }
-}
-
diff --git a/modeling/libraries/mml/monitoring/AndMultipleCriterion.cpp b/modeling/libraries/mml/monitoring/AndMultipleCriterion.cpp
index 88bfbb6..9b268a3 100644
--- a/modeling/libraries/mml/monitoring/AndMultipleCriterion.cpp
+++ b/modeling/libraries/mml/monitoring/AndMultipleCriterion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/AndMultipleCriterion.h b/modeling/libraries/mml/monitoring/AndMultipleCriterion.h
index bb10121..5ed029e 100644
--- a/modeling/libraries/mml/monitoring/AndMultipleCriterion.h
+++ b/modeling/libraries/mml/monitoring/AndMultipleCriterion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/AnsysBatch.cpp b/modeling/libraries/mml/monitoring/AnsysBatch.cpp
index 0717967..ab08101 100644
--- a/modeling/libraries/mml/monitoring/AnsysBatch.cpp
+++ b/modeling/libraries/mml/monitoring/AnsysBatch.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,7 +23,7 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-#include "simulator/simulators/Ansys/AnsysBatch.h"
+#include "AnsysBatch.h"
#include <iostream>
#include <fstream>
diff --git a/modeling/libraries/mml/monitoring/AnsysBatch.h b/modeling/libraries/mml/monitoring/AnsysBatch.h
index 45fcfcd..57cf4e9 100644
--- a/modeling/libraries/mml/monitoring/AnsysBatch.h
+++ b/modeling/libraries/mml/monitoring/AnsysBatch.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,12 +28,12 @@
#include <string>
-#include "manager/MonitoringManager.h"
+#include "MonitoringManager.h"
-#include "simulator/simulators/Ansys/AnsysBatchWriters/PrepWriter.h"
-#include "simulator/simulators/Ansys/AnsysBatchWriters/SoluWriter.h"
-#include "simulator/simulators/Ansys/AnsysBatchWriters/PostWriter.h"
-#include "simulator/simulators/Ansys/AnsysBatchWriters/ParametersWriter.h"
+#include "PrepWriter.h"
+#include "SoluWriter.h"
+#include "PostWriter.h"
+#include "ParametersWriter.h"
/**
*
* @ingroup group_cepmodeling_libraries_mml
diff --git a/modeling/libraries/mml/monitoring/AnsysBatchWriter.cpp b/modeling/libraries/mml/monitoring/AnsysBatchWriter.cpp
index 84f69a9..40d2e98 100644
--- a/modeling/libraries/mml/monitoring/AnsysBatchWriter.cpp
+++ b/modeling/libraries/mml/monitoring/AnsysBatchWriter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,7 +23,7 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-#include "simulator/simulators/Ansys/AnsysBatchWriter.h"
+#include "AnsysBatchWriter.h"
// -------------------- constructor --------------------
AnsysBatchWriter::AnsysBatchWriter(MonitoringManager* monitoringManager) {
diff --git a/modeling/libraries/mml/monitoring/AnsysBatchWriter.h b/modeling/libraries/mml/monitoring/AnsysBatchWriter.h
index 4beecea..df00c14 100644
--- a/modeling/libraries/mml/monitoring/AnsysBatchWriter.h
+++ b/modeling/libraries/mml/monitoring/AnsysBatchWriter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <string>
-#include "manager/MonitoringManager.h"
+#include "MonitoringManager.h"
/**
*
diff --git a/modeling/libraries/mml/monitoring/AnsysSimulator.cpp b/modeling/libraries/mml/monitoring/AnsysSimulator.cpp
index d357d04..4506130 100644
--- a/modeling/libraries/mml/monitoring/AnsysSimulator.cpp
+++ b/modeling/libraries/mml/monitoring/AnsysSimulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,7 +32,7 @@
#include <sstream>
#ifdef MML_GENERATE_GUI
-#include "simulator/simulators/Ansys/AnsysWidget.h"
+#include "AnsysWidget.h"
#endif
using namespace std;
diff --git a/modeling/libraries/mml/monitoring/AnsysSimulator.h b/modeling/libraries/mml/monitoring/AnsysSimulator.h
index ac94f33..fcfa3c3 100644
--- a/modeling/libraries/mml/monitoring/AnsysSimulator.h
+++ b/modeling/libraries/mml/monitoring/AnsysSimulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,8 +28,8 @@
#include <string>
-#include "simulator/NonInteractiveSimulator.h"
-#include "simulator/simulators/Ansys/AnsysBatch.h"
+#include "NonInteractiveSimulator.h"
+#include "AnsysBatch.h"
/**
* @ingroup group_cepmodeling_libraries_mml
diff --git a/modeling/libraries/mml/monitoring/AnsysWidget.cpp b/modeling/libraries/mml/monitoring/AnsysWidget.cpp
index a9957e5..5274d07 100644
--- a/modeling/libraries/mml/monitoring/AnsysWidget.cpp
+++ b/modeling/libraries/mml/monitoring/AnsysWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,7 +23,7 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-#include "simulator/simulators/Ansys/AnsysWidget.h"
+#include "AnsysWidget.h"
#include <QFile>
#include <QProcess>
diff --git a/modeling/libraries/mml/monitoring/AnsysWidget.h b/modeling/libraries/mml/monitoring/AnsysWidget.h
index 3f0eb0b..1ba7489 100644
--- a/modeling/libraries/mml/monitoring/AnsysWidget.h
+++ b/modeling/libraries/mml/monitoring/AnsysWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QProcess>
-#include "simulator/SimulatorWidget.h"
+#include "SimulatorWidget.h"
#include "AnsysSimulator.h"
#include "ui_AnsysWidget.h"
diff --git a/modeling/libraries/mml/monitoring/ArtiSynthSimulator.cpp b/modeling/libraries/mml/monitoring/ArtiSynthSimulator.cpp
index a4882b4..1334954 100644
--- a/modeling/libraries/mml/monitoring/ArtiSynthSimulator.cpp
+++ b/modeling/libraries/mml/monitoring/ArtiSynthSimulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,9 +23,9 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-#include "simulator/simulators/ArtiSynth/ArtiSynthSimulator.h"
+#include "ArtiSynthSimulator.h"
-#include "simulator/SimulatorFactory.h"
+#include "SimulatorFactory.h"
#include <iostream>
#include <fstream>
diff --git a/modeling/libraries/mml/monitoring/ArtiSynthSimulator.h b/modeling/libraries/mml/monitoring/ArtiSynthSimulator.h
index 4c867b0..aac6761 100644
--- a/modeling/libraries/mml/monitoring/ArtiSynthSimulator.h
+++ b/modeling/libraries/mml/monitoring/ArtiSynthSimulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <string>
-#include "simulator/NonInteractiveSimulator.h"
+#include "NonInteractiveSimulator.h"
/**
*
* @ingroup group_cepmodeling_libraries_mml
diff --git a/modeling/libraries/mml/monitoring/AtomIterator.cpp b/modeling/libraries/mml/monitoring/AtomIterator.cpp
index a45d051..4b3a089 100644
--- a/modeling/libraries/mml/monitoring/AtomIterator.cpp
+++ b/modeling/libraries/mml/monitoring/AtomIterator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,7 +32,7 @@ AtomIterator::AtomIterator(PhysicalModel* pml, std::string targetList) {
for(unsigned int i=0; i<tlist.getNumberOfTargets(); i++) {
atoms.push_back(pml->getAtom(tlist.getIndexedTarget(i)));
}
- } else {
+ } else {
for(unsigned int i=0; i<tlist.getNumberOfTargets(); i++) {
StructuralComponent *sc = dynamic_cast<StructuralComponent *>(pml->getComponentByName(tlist.getNamedTarget(i)));
if (sc) {
diff --git a/modeling/libraries/mml/monitoring/AtomIterator.h b/modeling/libraries/mml/monitoring/AtomIterator.h
index 14c2984..0eab46e 100644
--- a/modeling/libraries/mml/monitoring/AtomIterator.h
+++ b/modeling/libraries/mml/monitoring/AtomIterator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/CMakeLists.txt b/modeling/libraries/mml/monitoring/CMakeLists.txt
index 094932f..fedc8e6 100644
--- a/modeling/libraries/mml/monitoring/CMakeLists.txt
+++ b/modeling/libraries/mml/monitoring/CMakeLists.txt
@@ -1,331 +1,33 @@
-project(monitoring)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_monitoring)
-else()
- set(LIB_NAME library-monitoring)
-endif()
-
# TODO properly define the path to the XML Schema at run time (in MonitoringManager and MonitoringManagerFactory)
# otherwise this generates an error when executing the application on a machine that have no or a different
# source dir path!
#add_definitions(-DMONITORIN_XSD="${CMAKE_CURRENT_SOURCE_DIR}/../schema/MonitorIn.xsd")
#add_definitions(-DMONITOROUT_XSD="${CMAKE_CURRENT_SOURCE_DIR}/../schema/MonitorOut.xsd")
-option(MML_GENERATE_GUI "Generates MML GUI for CamiTK action" ON)
-if(MML_GENERATE_GUI)
- add_definitions(-DMML_GENERATE_GUI)
-endif(MML_GENERATE_GUI)
-
-# "find" SOFA (you need to have a SOFA_DIR environment variable
-# or to define it manually during configuration process)
-set(MML_SOFA_DIR $ENV{MML_SOFA_DIR} CACHE PATH "Where to find SOFA (for SOFA svn, this is the build directory)")
-if(EXISTS ${MML_SOFA_DIR})
- # Compile SOFA .scn import filter? (ON or OFF)
- option(MML_SOFA_SUPPORT "Compile SOFA Simulator?" ON)
-endif(EXISTS ${MML_SOFA_DIR})
-
-# sofa settings
-if(MML_SOFA_SUPPORT)
- add_definitions(-DSOFA_SUPPORT)
- add_definitions(-DSOFA_PATH="${MML_SOFA_DIR}")
-
- # support multiple version of SOFA. Two version are possible:
- # sofa svn version, the sofa 1.0 RC1 from the sofa website or the old sofa beta 4 from the debian repository
- option(MML_SOFA_SVN "Set to ON (default) if SOFA svn build dir is available in ${MML_SOFA_DIR}" ON) # latest
- option(MML_SOFA_1_0_RC1 "Set to ON if SOFA 1.0 RC1 is available in ${MML_SOFA_DIR}" OFF)
- option(MML_SOFA_1_0_BETA4 "Set to if SOFA 1.0 beta 4 is available in ${MML_SOFA_DIR}" OFF)
-
- # compilation flag
- if (MML_SOFA_SVN)
- # include and everything else needed => path to source tree needed
- # automatically get the value of CMAKE_SOURCE_DIR in the build directory toplevel Makefile
- # 1. Get the correct line from the CMakeCache file
- file(STRINGS ${MML_SOFA_DIR}/CMakeCache.txt SOFA_SOURCE_DIR_LINE REGEX "^Sofa_SOURCE_DIR:STATIC=(.*)$")
- # 2. Use a regex to extract the path from the line
- string(REGEX REPLACE "^Sofa_SOURCE_DIR:STATIC=(.*)$" "\\1" SOFA_SOURCE_DIR "${SOFA_SOURCE_DIR_LINE}")
- message("Detected sofa source directory is ${SOFA_SOURCE_DIR}")
-
- add_definitions(-DSOFA_SVN)
-
-# # use Find SOFA script
-# set(SOFA_DIR ${SOFA_SOURCE_DIR})
-# include(${SOFA_DIR}/cmake/Modules/FindSOFA.cmake)
-# list(APPEND CMAKE_MODULE_PATH "${SOFA_DIR}/cmake/Modules")
-# find_package(SOFA)
-# # Check the FindSofa.cmake and "translate" all their variables here
-# set(MML_SOFA_INCLUDE_DIR ${SOFA_INCLUDE_DIRS})
-# set(MML_SOFA_LIBS ${SOFA_LIB_CORE}
-# ${SOFA_LIB_HELPER}
-# ${SOFA_LIB_DEFAULT_TYPE})
- endif()
-
- if (MML_SOFA_1_0_RC1)
- add_definitions(-DSOFA_1_0_RC1)
- endif()
-
- if (MML_SOFA_1_0_BETA4)
- add_definitions(-DSOFA_1_0_BETA4)
- endif()
-
-
-
- # library settings depends on the sofa version
-
- if (MML_SOFA_SVN)
- set(MML_SOFA_LIBS
- # SOFA_LIB_NAME
- #SofaGui
- #SofaTree
- SofaCore
- SofaGuiQt
- SofaHelper
- SofaGuiGlut
- SofaGuiMain
- #SofaModeler
- #SofaSimulation
- #SofaObjectCreator
- SofaDefaultType
- #SofaGraph
-
- # SOFA_LIB_COMPONENT_NAME
- #SofaComponent
- #SofaComponentDev
- SofaComponentBase
- SofaComponentMisc
- SofaComponentCommon
- SofaComponentGeneral
- #SofaComponentMiscDev
- SofaComponentAdvanced
- #SofaComponentAdvancedDev
-
- # SOFA_LIB_BASE_NAME
- SofaBaseAnimationLoop
- SofaBaseCollision
- SofaBaseLinearSolver
- SofaBaseMechanics
- SofaBaseTopology
- SofaBaseVisual
-
- # SOFA_LIB_GENERAL_NAME
- SofaBoundaryCondition
- SofaConstraint
- SofaDenseSolver
- SofaEngine
- SofaExporter
- SofaGraphComponent
- SofaOpenglVisual
- SofaPreconditioner
- SofaTopologyMapping
- SofaUserInteraction
- SofaValidation
- SofaHaptics
-
- # SOFA_LIB_ADVANCED_NAME
- #SofaAdvancedConstraint
- #SofaAdvancedFem
- #SofaAdvancedInteraction
- SofaEigen2Solver
- SofaEulerianFluid
- #SofaMjedFem
- SofaNonUniformFem
- #SofaNonUniformFemDev
- SofaSphFluid
- SofaVolumetricData
-
- # SOFA_LIB_MISC_NAME
- SofaMisc
- SofaMiscCollision
- #SofaMiscCollisionDev
- SofaMiscFem
- #SofaMiscDev
- #SofaMiscFemDev
- SofaMiscForceField
- #SofaMiscForcefieldDev
- SofaMiscMapping
- #SofaMiscMappingDev
- SofaMiscSolver
- #SofaMiscSolverDev
- SofaMiscTopology
- #SofaMiscTopologyDev
- SofaMiscEngine
- )
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib)
- endif()
-
- if (MML_SOFA_1_0_RC1)
- # old sofa RC1 from the tarballs
- if(WIN32)
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/win32/ReleaseVC9 ${MML_SOFA_DIR}/lib/win32 ${MML_SOFA_DIR}/lib ${MML_SOFA_DIR}/bin )
- else()
- set(MML_SOFA_LIB_DIR ${MML_SOFA_DIR}/lib/linux ${MML_SOFA_DIR}/lib)
- endif()
-
- # set dependencies
- set(MML_SOFA_LIBS sofacore #sofa_component_dev
- #sofa_component_advanced_dev sofa_component_misc_dev
- sofa_component
- #sofa_non_uniform_fem_dev
- #sofa_advanced_fem
- #sofa_mjed_fem
- #sofa_advanced_constraint
- #sofa_advanced_interaction
- #sofa_misc_topology_dev
- #sofa_misc_mapping_dev
- #sofa_misc_forcefield_dev
- #sofa_misc_fem_dev
- #sofa_misc_collision_dev
- #sofa_misc_solver_dev
- #sofa_misc_dev
- sofa_exporter sofa_loader sofa_misc_forcefield sofa_component_base sofa_component_common sofa_component_general sofa_component_advanced sofa_component_misc sofahelper sofa_engine sofa_sph_fluid sofa_non_uniform_fem sofa_base_topology sofa_boundary_condition sofa_haptics sofa_constraint sofatree sofa_base_linear_solver sofa_implicit_ode_solver sofa_simple_fem sofa_topology_mapping sofa_user_interaction sofa_misc_collision sofa_preconditioner sofa_misc_topology sofa_mesh_collision sofa [...]
- #sofabgl
- sofa_base_collision sofa_deformable sofa_graph_component sofa_base_mechanics sofa_rigid sofa_base_animation_loop sofa_object_interaction sofa_explicit_ode_solver sofa_eigen2_solver sofa_validation sofa_dense_solver sofa_eulerian_fluid sofa_misc_mapping sofa_misc_fem sofa_misc_engine sofa_misc_solver sofa_misc
- sofa_base_visual #-lnewmat -lGLEW -lpng
- sofasimulation #-lminiFlowVR
- sofacore #-ltinyxml
- sofadefaulttype #-lQt3Support -lQtOpenGL -lQtGui -lQtCore -lGLU -lGL -lpthread
- sofamodeler
- )
- endif()
-
- if(MML_SOFA_1_0_BETA4)
- # Sofa1.0beta4 from the package
- set(MML_SOFA_LIBS sofacore sofacomponent sofasimulation sofatree sofahelper sofadefaulttype)
- endif()
-
- # add debug suffix (TODO update for SOFA SVN)
- if(WIN32)
- if( CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "RelWithDebInfo" )
- set(MML_SOFA_LIBS_WIN32 ${MML_SOFA_LIBS})
- set(MML_SOFA_LIBS)
- if(MML_SOFA_1_0_RC1)
- set(SOFA_VERSION_SUFFIX "_1_0d")
- endif()
- if(MML_SOFA_1_0_BETA4)
- set(SOFA_VERSION_SUFFIX "d")
- endif()
- foreach(SOFA_LIB ${MML_SOFA_LIBS_WIN32})
- set(MML_SOFA_LIBS ${MML_SOFA_LIBS} ${SOFA_LIB}${SOFA_VERSION_SUFFIX})
- endforeach()
- endif()
- endif()
-
- # SOFA include directories
-
- # use sofa source directory for sofa svn version
- if (MML_SOFA_SVN)
- set(MML_SOFA_INCLUDE_DIR ${SOFA_SOURCE_DIR}/include ${SOFA_SOURCE_DIR}/modules ${SOFA_SOURCE_DIR}/framework
- ${SOFA_SOURCE_DIR}/extlibs/miniBoost ${SOFA_SOURCE_DIR}/include/modules
- ${SOFA_SOURCE_DIR}/include/framework ${SOFA_SOURCE_DIR}/include/extlibs/miniBoost
- ${SOFA_SOURCE_DIR}/extlibs/tinyxml )
- endif()
-
- if (MML_SOFA_1_0_BETA4 OR MML_SOFA_1_0_RC1)
- # includes
- set(MML_SOFA_INCLUDE_DIR ${MML_SOFA_DIR}/include ${MML_SOFA_DIR}/modules ${MML_SOFA_DIR}/framework
- ${MML_SOFA_DIR}/extlibs/miniBoost ${MML_SOFA_DIR}/include/modules
- ${MML_SOFA_DIR}/include/framework ${MML_SOFA_DIR}/include/extlibs/miniBoost )
- endif()
-
- if(MML_GENERATE_GUI)
- set(sofa_MOC_SRCS SofaWidget.h)
- set(sofa_UIS SofaWidget.ui)
- qt4_wrap_ui(sofa_UIS_H ${sofa_UIS})
- qt4_wrap_cpp(sofa_MOCS ${sofa_MOC_SRCS})
- set(sofa_QT_SRC SofaWidget.cpp)
- endif(MML_GENERATE_GUI)
-
- set(MML_SOFA_HEADERS SofaSimulator.h
- TranslationConstraint.h
- ${sofa_UIS_H}
- ${sofa_MOC_SRCS}
- )
- set(MML_SOFA_SRC SofaSimulator.cpp
- TranslationConstraint.cpp
- TranslationConstraint.inl
- ${sofa_MOCS}
- ${sofa_MOC_UI}
- ${sofa_QT_SRC}
- )
-endif(MML_SOFA_SUPPORT)
-
-
-set(MML_ANSYS_BIN $ENV{MML_ANSYS_BIN} CACHE FILE "Where to find Ansys binary")
-set(MML_ANSYS_WORKING_DIR $ENV{MML_ANSYS_WORKING_DIR} CACHE PATH "Specify a folder for ansys working files")
-if(EXISTS ${MML_ANSYS_BIN})
-if(EXISTS ${MML_ANSYS_WORKING_DIR})
- # Compile Ansys simulator files (ON or OFF)
- option(MML_ANSYS_SUPPORT "Compile Ansys simulator?" ON)
-
- # ansys settings
- if(MML_ANSYS_SUPPORT)
- # compilation flag
- add_definitions(-DANSYS_SUPPORT)
- add_definitions(-DANSYS_BIN="${MML_ANSYS_BIN}" -DANSYS_WORKING_DIR="${MML_ANSYS_WORKING_DIR}")
-
- if(MML_GENERATE_GUI)
- set(ansys_MOC_SRCS AnsysWidget.h)
- set(ansys_UIS AnsysWidget.ui)
- qt4_wrap_ui(ansys_UIS_H ${ansys_UIS})
- qt4_wrap_cpp(ansys_MOC_UI ${ansys_UIS_H})
- qt4_wrap_cpp(ansys_MOCS ${ansys_MOC_SRCS})
- set(ansys_QT_SRC AnsysWidget.cpp)
- endif(MML_GENERATE_GUI)
-
- set(MML_ANSYS_HEADERS AnsysBatch.h
- AnsysBatchWriter.h
- PrepWriter.h
- SoluWriter.h
- PostWriter.h
- ParametersWriter.h
- AnsysSimulator.h
- ${ansys_UIS_H}
- ${ansys_MOC_SRCS}
- )
-
- set(MML_ANSYS_SRC AnsysBatch.cpp
- AnsysBatchWriter.cpp
- PrepWriter.cpp
- SoluWriter.cpp
- PostWriter.cpp
- ParametersWriter.cpp
- AnsysSimulator.cpp
- ${ansys_MOCS}
- ${ansys_MOC_UI}
- ${ansys_QT_SRC}
- )
- endif(MML_ANSYS_SUPPORT)
-endif(EXISTS ${MML_ANSYS_WORKING_DIR})
-endif(EXISTS ${MML_ANSYS_BIN})
-
-set(MML_ARTISYNTH_BIN $ENV{MML_ARTISYNTH_BIN} CACHE FILE "Where to find artisynth binary")
-set(MML_ARTISYNTH_WORKING_DIR $ENV{MML_ARTISYNTH_WORKING_DIR} CACHE PATH "Specify a folder for artisynth working files")
-if(EXISTS ${MML_ARTISYNTH_BIN})
-if(EXISTS ${MML_ARTISYNTH_WORKING_DIR})
- # Compile ARTISYNTH simulator files (ON or OFF)
- option(MML_ARTISYNTH_SUPPORT "Compile Artisynth simulator?" ON)
-
- # ARTISYNTH settings
- if(MML_ARTISYNTH_SUPPORT)
- # compilation flag
- add_definitions(-DARTISYNTH_SUPPORT)
- add_definitions(-DARTISYNTH_BIN="${MML_ARTISYNTH_BIN}" -DARTISYNTH_WORKING_DIR="${MML_ARTISYNTH_WORKING_DIR}")
- set(MML_ARTISYNTH_HEADERS ArtiSynthSimulator.h)
- set(MML_ARTISYNTH_SRC ArtiSynthSimulator.cpp)
- endif(MML_ARTISYNTH_SUPPORT)
-endif(EXISTS ${MML_ARTISYNTH_WORKING_DIR})
-endif(EXISTS ${MML_ARTISYNTH_BIN})
+# +-------------------------------------------------------+
+# | EXTERNAL SIMULATOR SUPPORT : SOFA, ANSYS, ARTISYNTH |
+# +-------------------------------------------------------+
+include(ExternalSimulatorSupport.cmake)
+# +---------------+
+# | GUI SUPPORT |
+# +---------------+
if(MML_GENERATE_GUI)
- set(MML_MOC_SRCS SimulatorWidget.h
- Xmlhighlighter.h
+ add_definitions(-DMML_GENERATE_GUI)
+ set(MML_GUI_MOC_SRCS SimulatorWidget.h
+ Xmlhighlighter.h
+ )
+ # qt4_wrap_cpp(MML_GUI_MOCS ${MML_GUI_MOC_SRCS}) Not needed if AUTOMOC is set to ON (CMake therefore handle moc automatically)
+ set(MML_GUI_HEADERS ${MML_GUI_MOC_SRCS})
+ set(MML_GUI_SRC ${MML_GUI_MOCS}
+ SimulatorWidget.cpp
+ Xmlhighlighter.cpp
)
- qt4_wrap_cpp(MML_MOCS ${MML_MOC_SRCS})
- set(MML_QT_SRC SimulatorWidget.cpp
- Xmlhighlighter.cpp
- )
endif(MML_GENERATE_GUI)
+# +-----------------------+
+# | SOURCES AND HEADERS |
+# +-----------------------+
set(monitoring_H MMLAPI.h
StoppingCriterion.h
StoppingCriterionFactory.h
@@ -344,6 +46,7 @@ set(monitoring_H MMLAPI.h
OrMultipleCriterion.h
MinThreshold.h
Threshold.h
+ TimePeriodThreshold.h
Simulator.h
NonInteractiveSimulator.h
InteractiveSimulator.h
@@ -352,7 +55,7 @@ set(monitoring_H MMLAPI.h
${MML_SOFA_HEADERS}
${MML_ANSYS_HEADERS}
${MML_ARTISYNTH_HEADERS}
- ${MML_MOC_SRCS}
+ ${MML_GUI_HEADERS}
Monitor.h
MonitorFactory.h
MonitorGeometricDeviation.h
@@ -401,6 +104,7 @@ set(monitoring_SRCS ${monitoring_H}
OrMultipleCriterion.cpp
MinThreshold.cpp
Threshold.cpp
+ TimePeriodThreshold.cpp
Simulator.cpp
NonInteractiveSimulator.cpp
InteractiveSimulator.cpp
@@ -408,8 +112,7 @@ set(monitoring_SRCS ${monitoring_H}
${MML_SOFA_SRC}
${MML_ANSYS_SRC}
${MML_ARTISYNTH_SRC}
- ${MML_MOCS}
- ${MML_QT_SRC}
+ ${MML_GUI_SRC}
Monitor.cpp
MonitorFactory.cpp
MonitorGeometricDeviation.cpp
@@ -439,252 +142,30 @@ set(monitoring_SRCS ${monitoring_H}
NonInteractiveMonitoringManager.cpp
)
-if (PACKAGING_NSIS)
- set( monitoring_LIBRARIES
- library_mml
- library_pml
- library_lml
- )
-else()
- set( monitoring_LIBRARIES
- library-mml
- library-pml
- library-lml
- )
-endif()
-
-set(monitoring_link)
-
-if(MML_SOFA_SUPPORT)
- set(monitoring_LIBRARIES ${monitoring_LIBRARIES}
- ${MML_SOFA_LIBS}
- )
- set(monitoring_link ${monitoring_link}
- ${MML_SOFA_LIB_DIR}
- )
-endif(MML_SOFA_SUPPORT)
-
-if(MML_GENERATE_GUI)
- set(monitoring_LIBRARIES ${monitoring_LIBRARIES}
- ${QT_LIBRARIES}
- )
-endif(MML_GENERATE_GUI)
-
-if(MML_GENERATE_GUI)
- set(monitoring_INCLUDE_DIR ${monitoring_INCLUDE_DIR} ${QT_INCLUDE_DIR})
-endif(MML_GENERATE_GUI)
-
# Add all the include directories
-set(monitoring_INCLUDE_DIR ${monitoring_INCLUDE_DIR} ${MML_SOFA_INCLUDE_DIR} ${MML_ANSYS_WORKING_DIR} ${MML_ARTISYNTH_WORKING_DIR})
-
-# add_definitions(-DCOMPILE_MML_TOOL)
-# add_definitions(-D_CRT_SECURE_NO_WARNINGS)
-
-# add lib as a camitk library
+set(monitoring_INCLUDE_DIRECTORIES ${MMLSCHEMA_INCLUDE_DIR}
+ ${MML_GUI_INCLUDE_DIR}
+ ${SOFA_INCLUDE_DIR}
+ ${MML_ANSYS_WORKING_DIR}
+ ${MML_ARTISYNTH_WORKING_DIR}
+)
+
+# add monitoring as a camitk library
camitk_library( SHARED
SOURCES ${monitoring_SRCS}
DEFINES COMPILE_MML_TOOL
- NEEDS_QT_MODULES
+ NEEDS_QT
NEEDS_XERCESC
- NEEDS_LIBXML2
- NEEDS_CEP_LIBRARIES mml pml lml
- INCLUDE_DIRECTORIES ${monitoring_INCLUDE_DIR}
- LINK_DIRECTORIES ${MML_SOFA_DIR}/lib
+ NEEDS_CEP_LIBRARIES mmlschema pml pmlschema lml lmlschema
+ PUBLIC #install directly in lib (or bin for Windows).
+ NEEDS_XSD
+ INCLUDE_DIRECTORIES ${monitoring_INCLUDE_DIRECTORIES}
+ LINK_DIRECTORIES ${SOFA_LIB_DIR}
# Caution: probably need here for Ansys and Artisynth library something like - LINK_DIRECTORIES ${MML_ANSYS_WORKING_DIR}/lib ${MML_ARTISYNTH_WORKING_DIR}/lib
- EXTERNAL_LIBRARIES ${MML_SOFA_LIBS}
+ EXTERNAL_LIBRARIES ${SOFA_LIBS}
CEP_NAME CEP_MODELING
+ HEADERS_TO_INSTALL ${monitoring_H}
DESCRIPTION "Tools to monitor a biomechanical deformation."
)
-if (PACKAGING_NSIS)
- add_dependencies(library_monitoring library_lml library_pml library_mml)
-else()
- add_dependencies(library-monitoring library-lml library-pml library-mml)
-endif()
-
-# #--------------
-# # installation
-# #--------------
-# export_headers(
-# manager/MonitoringManager.h
-# manager/MonitoringManagerFactory.h
-# manager/InteractiveMonitoringManager.h
-# manager/NonInteractiveMonitoringManager.h
-# SUBDIRECTORY manager
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# tools/Chrono.h
-# tools/Tools.h
-# tools/Macros.h
-# tools/AtomIterator.h
-# tools/SurfaceExtractor/Facet.h
-# tools/SurfaceExtractor/SurfaceExtractor.h
-# SUBDIRECTORY tools
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# reference/Reference.h
-# SUBDIRECTORY reference
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# monitor/Monitor.h
-# monitor/MonitorFactory.h
-# SUBDIRECTORY monitor
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# monitor/monitors/MonitorGeometricDeviation.h
-# monitor/monitors/MonitorPosition.h
-# monitor/monitors/MonitorRen.h
-# monitor/monitors/MonitorForce.h
-# monitor/monitors/MonitorPointSetDistance.h
-# monitor/monitors/MonitorPointFinalSetDistance.h
-# monitor/monitors/MonitorPointToTriangleMeshDistanceFinal.h
-# monitor/monitors/MonitorVolume.h
-# monitor/monitors/MonitorSurface.h
-# monitor/monitors/MonitorDisplacement.h
-# monitor/monitors/MonitorNormDisplacement.h
-# monitor/monitors/MonitorDistanceX.h
-# monitor/monitors/MonitorDistanceY.h
-# monitor/monitors/MonitorDistanceZ.h
-# monitor/monitors/MonitorComputingTime.h
-#
-# SUBDIRECTORY monitor/monitors
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# if(MML_ANSYS_SUPPORT)
-# export_headers(
-# simulator/simulators/Ansys/AnsysBatch.h
-# simulator/simulators/Ansys/AnsysBatchWriter.h
-# simulator/simulators/Ansys/AnsysSimulator.h
-# SUBDIRECTORY simulator/simulators/Ansys
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# simulator/simulators/Ansys/AnsysBatchWriters/PrepWriter.h
-# simulator/simulators/Ansys/AnsysBatchWriters/SoluWriter.h
-# simulator/simulators/Ansys/AnsysBatchWriters/PostWriter.h
-# simulator/simulators/Ansys/AnsysBatchWriters/ParametersWriter.h
-# SUBDIRECTORY simulator/simulators/Ansys/AnsysBatchWriters
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-# endif()
-#
-# if(MML_ARTISYNTH_SUPPORT)
-# export_headers(
-# simulator/simulators/ArtiSynth/ArtiSynthSimulator.h
-# SUBDIRECTORY simulator/simulators/ArtiSynth
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-# endif()
-#
-# if(MML_SOFA_SUPPORT)
-# export_headers(
-# ${MML_SOFA_HEADERS}
-# SUBDIRECTORY simulator/simulators/Sofa
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-# endif()
-#
-# if(MML_GENERATE_GUI)
-# export_headers(
-# simulator/SimulatorWidget.h
-# SUBDIRECTORY simulator
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# tools/Xmlhighlighter.h
-# SUBDIRECTORY tools
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-# endif(MML_GENERATE_GUI)
-#
-# export_headers(
-# simulator/Simulator.h
-# simulator/NonInteractiveSimulator.h
-# simulator/InteractiveSimulator.h
-# simulator/SimulatorFactory.h
-# SUBDIRECTORY simulator
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# simulator/simulators/InitSimulators.h
-# SUBDIRECTORY simulator/simulators
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# stoppingCriterion/StoppingCriterion.h
-# stoppingCriterion/StoppingCriterionFactory.h
-# SUBDIRECTORY stoppingCriterion
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# stoppingCriterion/stoppingCriteria/Criterion.h
-# stoppingCriterion/stoppingCriteria/CriterionFactory.h
-# stoppingCriterion/stoppingCriteria/MultipleCriterion.h
-# stoppingCriterion/stoppingCriteria/MultipleCriterionFactory.h
-# stoppingCriterion/stoppingCriteria/Method.h
-# stoppingCriterion/stoppingCriteria/MethodFactory.h
-# SUBDIRECTORY stoppingCriterion/stoppingCriteria
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# stoppingCriterion/stoppingCriteria/criteria/Force.h
-# stoppingCriterion/stoppingCriteria/criteria/KineticEnergy.h
-# stoppingCriterion/stoppingCriteria/criteria/Position.h
-# stoppingCriterion/stoppingCriteria/criteria/Time.h
-# stoppingCriterion/stoppingCriteria/criteria/Velocity.h
-# SUBDIRECTORY stoppingCriterion/stoppingCriteria/criteria
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# stoppingCriterion/stoppingCriteria/multipleCriteria/AndMultipleCriterion.h
-# stoppingCriterion/stoppingCriteria/multipleCriteria/OrMultipleCriterion.h
-# SUBDIRECTORY stoppingCriterion/stoppingCriteria/multipleCriteria
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# stoppingCriterion/stoppingCriteria/methods/MinThreshold.h
-# stoppingCriterion/stoppingCriteria/methods/Threshold.h
-# SUBDIRECTORY stoppingCriterion/methods
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
-#
-# export_headers(
-# MMLAPI.h
-# COMPONENT ${LIB_NAME}
-# GROUP libraries
-# )
\ No newline at end of file
+set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ${${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES} LINK_INTERFACE_LIBRARIES "")
diff --git a/modeling/libraries/mml/monitoring/Chrono.cpp b/modeling/libraries/mml/monitoring/Chrono.cpp
index e8cf74f..c77d79d 100644
--- a/modeling/libraries/mml/monitoring/Chrono.cpp
+++ b/modeling/libraries/mml/monitoring/Chrono.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,12 +30,12 @@
extern "C" {
#include <time.h> //
#include <sys/timeb.h> // ftime (chrono)
-#include <time.h> // gettimeofday (chrono)
+// #include <time.h> // gettimeofday (chrono)
#if !defined(_WIN32) || defined(__MINGW32__)
#include <sys/time.h> // gettimeofday (chrono)
#include <unistd.h>
#else // MSVC only
- int
+ /*int*/ // why this int here?
#define WIN32_LEAN_AND_MEAN
#include <winsock2.h>
#include <time.h>
diff --git a/modeling/libraries/mml/monitoring/Chrono.h b/modeling/libraries/mml/monitoring/Chrono.h
index 855ddbd..215f64d 100644
--- a/modeling/libraries/mml/monitoring/Chrono.h
+++ b/modeling/libraries/mml/monitoring/Chrono.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Criterion.cpp b/modeling/libraries/mml/monitoring/Criterion.cpp
index ff85c4a..e425931 100644
--- a/modeling/libraries/mml/monitoring/Criterion.cpp
+++ b/modeling/libraries/mml/monitoring/Criterion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Criterion.h b/modeling/libraries/mml/monitoring/Criterion.h
index 92d952e..d742f77 100644
--- a/modeling/libraries/mml/monitoring/Criterion.h
+++ b/modeling/libraries/mml/monitoring/Criterion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,7 +30,7 @@
#include <vector>
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "StoppingCriterion.h"
diff --git a/modeling/libraries/mml/monitoring/CriterionFactory.cpp b/modeling/libraries/mml/monitoring/CriterionFactory.cpp
index 9729c85..a039180 100644
--- a/modeling/libraries/mml/monitoring/CriterionFactory.cpp
+++ b/modeling/libraries/mml/monitoring/CriterionFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/CriterionFactory.h b/modeling/libraries/mml/monitoring/CriterionFactory.h
index 8e896ce..d32219e 100644
--- a/modeling/libraries/mml/monitoring/CriterionFactory.h
+++ b/modeling/libraries/mml/monitoring/CriterionFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIAFACTORY_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIAFACTORY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
diff --git a/modeling/libraries/mml/monitoring/ExternalSimulatorSupport.cmake b/modeling/libraries/mml/monitoring/ExternalSimulatorSupport.cmake
new file mode 100644
index 0000000..dcb1849
--- /dev/null
+++ b/modeling/libraries/mml/monitoring/ExternalSimulatorSupport.cmake
@@ -0,0 +1,111 @@
+# External Simulator supports
+# Define all variables and settings for supporting external simulators:
+# - Sofa
+# - Ansys
+# - Artisynth
+
+# +----------------+
+# | SOFA SUPPORT |
+# +----------------+
+if (SOFA_SUPPORT)
+ # Defines the following variables
+ # - MML_SOFA_HEADERS
+ # - MML_SOFA_SRC
+
+ # add the sofa widget
+ if(MML_GENERATE_GUI)
+ set(SOFA_MOC_SRCS SofaWidget.h)
+ set(SOFA_UIS SofaWidget.ui)
+ qt4_wrap_ui(SOFA_UIS_H ${SOFA_UIS})
+ # qt4_wrap_cpp(SOFA_MOCS ${SOFA_MOC_SRCS}) Not needed if AUTOMOC is set to ON (CMake therefore handle moc automatically)
+ set(SOFA_GUI_SRC SofaWidget.cpp)
+ endif()
+
+ # define all the sources needed to support Sofa
+ set(MML_SOFA_HEADERS SofaSimulator.h
+ TranslationConstraint.h
+ ${SOFA_UIS_H}
+ ${SOFA_MOC_SRCS}
+ )
+ set(MML_SOFA_SRC SofaSimulator.cpp
+ TranslationConstraint.cpp
+ TranslationConstraint.inl
+ ${SOFA_MOCS}
+ ${SOFA_MOC_UI}
+ ${SOFA_GUI_SRC}
+ )
+
+ # specific flags needed (C++ code)
+ add_definitions(-DSOFA_SUPPORT)
+ add_definitions(-DSOFA_BUILD_DIR="${SOFA_BUILD_DIR}")
+ add_definitions(-DSOFA_SOURCE_DIR="${SOFA_SOURCE_DIR}")
+ add_definitions(-DSOFA_STABLE)
+endif()
+
+# +-----------------+
+# | ANSYS SUPPORT |
+# +-----------------+
+set(MML_ANSYS_BIN $ENV{MML_ANSYS_BIN} CACHE FILE "Where to find Ansys binary")
+set(MML_ANSYS_WORKING_DIR $ENV{MML_ANSYS_WORKING_DIR} CACHE PATH "Specify a folder for ansys working files")
+if((EXISTS ${MML_ANSYS_BIN}) AND (EXISTS ${MML_ANSYS_WORKING_DIR}))
+ # Compile Ansys simulator files (ON or OFF)
+ option(MML_ANSYS_SUPPORT "Compile Ansys simulator?" ON)
+
+ # ansys settings
+ if(MML_ANSYS_SUPPORT)
+ # compilation flag
+ add_definitions(-DANSYS_SUPPORT)
+ add_definitions(-DANSYS_BIN="${MML_ANSYS_BIN}" -DANSYS_WORKING_DIR="${MML_ANSYS_WORKING_DIR}")
+
+ if(MML_GENERATE_GUI)
+ set(ansys_MOC_SRCS AnsysWidget.h)
+ set(ansys_UIS AnsysWidget.ui)
+ qt4_wrap_ui(ansys_UIS_H ${ansys_UIS})
+ qt4_wrap_cpp(ansys_MOC_UI ${ansys_UIS_H})
+ qt4_wrap_cpp(ansys_MOCS ${ansys_MOC_SRCS})
+ set(ansys_QT_SRC AnsysWidget.cpp)
+ endif(MML_GENERATE_GUI)
+
+ set(MML_ANSYS_HEADERS AnsysBatch.h
+ AnsysBatchWriter.h
+ PrepWriter.h
+ SoluWriter.h
+ PostWriter.h
+ ParametersWriter.h
+ AnsysSimulator.h
+ ${ansys_UIS_H}
+ ${ansys_MOC_SRCS}
+ )
+
+ set(MML_ANSYS_SRC AnsysBatch.cpp
+ AnsysBatchWriter.cpp
+ PrepWriter.cpp
+ SoluWriter.cpp
+ PostWriter.cpp
+ ParametersWriter.cpp
+ AnsysSimulator.cpp
+ ${ansys_MOCS}
+ ${ansys_MOC_UI}
+ ${ansys_QT_SRC}
+ )
+ endif()
+endif()
+
+# +---------------------+
+# | ARTISYNTH SUPPORT |
+# +---------------------+
+set(MML_ARTISYNTH_BIN $ENV{MML_ARTISYNTH_BIN} CACHE FILE "Where to find artisynth binary")
+set(MML_ARTISYNTH_WORKING_DIR $ENV{MML_ARTISYNTH_WORKING_DIR} CACHE PATH "Specify a folder for artisynth working files")
+if((EXISTS ${MML_ARTISYNTH_BIN}) AND (EXISTS ${MML_ARTISYNTH_WORKING_DIR}))
+ # Compile ARTISYNTH simulator files (ON or OFF)
+ option(MML_ARTISYNTH_SUPPORT "Compile Artisynth simulator?" ON)
+
+ # ARTISYNTH settings
+ if(MML_ARTISYNTH_SUPPORT)
+ # compilation flag
+ add_definitions(-DARTISYNTH_SUPPORT)
+ add_definitions(-DARTISYNTH_BIN="${MML_ARTISYNTH_BIN}" -DARTISYNTH_WORKING_DIR="${MML_ARTISYNTH_WORKING_DIR}")
+ set(MML_ARTISYNTH_HEADERS ArtiSynthSimulator.h)
+ set(MML_ARTISYNTH_SRC ArtiSynthSimulator.cpp)
+ endif(MML_ARTISYNTH_SUPPORT)
+endif()
\ No newline at end of file
diff --git a/modeling/libraries/mml/monitoring/Facet.cpp b/modeling/libraries/mml/monitoring/Facet.cpp
index 9eb8561..33ed9fe 100644
--- a/modeling/libraries/mml/monitoring/Facet.cpp
+++ b/modeling/libraries/mml/monitoring/Facet.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Facet.h b/modeling/libraries/mml/monitoring/Facet.h
index e328c5a..7d52183 100644
--- a/modeling/libraries/mml/monitoring/Facet.h
+++ b/modeling/libraries/mml/monitoring/Facet.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Force.cpp b/modeling/libraries/mml/monitoring/Force.cpp
index a30ad96..28fac6d 100644
--- a/modeling/libraries/mml/monitoring/Force.cpp
+++ b/modeling/libraries/mml/monitoring/Force.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Force.h b/modeling/libraries/mml/monitoring/Force.h
index 9997d77..8a43219 100644
--- a/modeling/libraries/mml/monitoring/Force.h
+++ b/modeling/libraries/mml/monitoring/Force.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_FORCE_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_FORCE_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
diff --git a/modeling/libraries/mml/monitoring/InitSimulators.h b/modeling/libraries/mml/monitoring/InitSimulators.h
index 5285f44..18c3def 100644
--- a/modeling/libraries/mml/monitoring/InitSimulators.h
+++ b/modeling/libraries/mml/monitoring/InitSimulators.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.cpp b/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.cpp
index 9305896..4f3ef98 100644
--- a/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.cpp
+++ b/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.h b/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.h
index 1deb017..13a8325 100644
--- a/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.h
+++ b/modeling/libraries/mml/monitoring/InteractiveMonitoringManager.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,8 +33,8 @@
// Monitor includes
#include "MonitoringManager.h"
-#include "MonitorIn.hxx"
-#include "MonitorOut.hxx"
+#include <MonitorIn.hxx>
+#include <MonitorOut.hxx>
// Criterion includes
#include "StoppingCriterion.h"
diff --git a/modeling/libraries/mml/monitoring/InteractiveSimulator.cpp b/modeling/libraries/mml/monitoring/InteractiveSimulator.cpp
index 3444c00..d8ad74c 100644
--- a/modeling/libraries/mml/monitoring/InteractiveSimulator.cpp
+++ b/modeling/libraries/mml/monitoring/InteractiveSimulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/InteractiveSimulator.h b/modeling/libraries/mml/monitoring/InteractiveSimulator.h
index 294b956..ff23d1f 100644
--- a/modeling/libraries/mml/monitoring/InteractiveSimulator.h
+++ b/modeling/libraries/mml/monitoring/InteractiveSimulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/KineticEnergy.cpp b/modeling/libraries/mml/monitoring/KineticEnergy.cpp
index 93ec0c6..654ece7 100644
--- a/modeling/libraries/mml/monitoring/KineticEnergy.cpp
+++ b/modeling/libraries/mml/monitoring/KineticEnergy.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/KineticEnergy.h b/modeling/libraries/mml/monitoring/KineticEnergy.h
index 25ddad4..b98098b 100644
--- a/modeling/libraries/mml/monitoring/KineticEnergy.h
+++ b/modeling/libraries/mml/monitoring/KineticEnergy.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_KINETICENGERGY_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_KINETICENGERGY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
diff --git a/modeling/libraries/mml/monitoring/MMLAPI.h b/modeling/libraries/mml/monitoring/MMLAPI.h
index daa1c35..0c63579 100644
--- a/modeling/libraries/mml/monitoring/MMLAPI.h
+++ b/modeling/libraries/mml/monitoring/MMLAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Macros.h b/modeling/libraries/mml/monitoring/Macros.h
index f274550..682fdb4 100644
--- a/modeling/libraries/mml/monitoring/Macros.h
+++ b/modeling/libraries/mml/monitoring/Macros.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Method.cpp b/modeling/libraries/mml/monitoring/Method.cpp
index 913565a..b13945a 100644
--- a/modeling/libraries/mml/monitoring/Method.cpp
+++ b/modeling/libraries/mml/monitoring/Method.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Method.h b/modeling/libraries/mml/monitoring/Method.h
index 680e677..89b143b 100644
--- a/modeling/libraries/mml/monitoring/Method.h
+++ b/modeling/libraries/mml/monitoring/Method.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MethodFactory.cpp b/modeling/libraries/mml/monitoring/MethodFactory.cpp
index f0cac62..fbb2784 100644
--- a/modeling/libraries/mml/monitoring/MethodFactory.cpp
+++ b/modeling/libraries/mml/monitoring/MethodFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,6 +40,8 @@ Method* MethodFactory::createMethod(mml::Method& m) {
return (new Threshold((mml::Threshold*)&m));
} else if (dynamic_cast<mml::MinThreshold*>(&m)) {
return (new MinThreshold((mml::MinThreshold*)&m));
+ } else if (dynamic_cast<mml::TimePeriodThreshold*>(&m)) {
+ return (new TimePeriodThreshold((mml::TimePeriodThreshold*)&m));
} else {
std::cerr << "Method type error: unknown method" << std::endl;
return NULL;
diff --git a/modeling/libraries/mml/monitoring/MethodFactory.h b/modeling/libraries/mml/monitoring/MethodFactory.h
index c85e143..235294d 100644
--- a/modeling/libraries/mml/monitoring/MethodFactory.h
+++ b/modeling/libraries/mml/monitoring/MethodFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,12 +26,13 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_METHODFACTORY_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_METHODFACTORY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Method.h"
#include "Threshold.h"
#include "MinThreshold.h"
+#include "TimePeriodThreshold.h"
/**
*
* @ingroup group_cepmodeling_libraries_mml
diff --git a/modeling/libraries/mml/monitoring/MinThreshold.cpp b/modeling/libraries/mml/monitoring/MinThreshold.cpp
index 4f53eaf..25eda26 100644
--- a/modeling/libraries/mml/monitoring/MinThreshold.cpp
+++ b/modeling/libraries/mml/monitoring/MinThreshold.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MinThreshold.h b/modeling/libraries/mml/monitoring/MinThreshold.h
index 9464c8b..2f8ad34 100644
--- a/modeling/libraries/mml/monitoring/MinThreshold.h
+++ b/modeling/libraries/mml/monitoring/MinThreshold.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_MINTHRESHOLD_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_MINTHRESHOLD_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Method.h"
/**
diff --git a/modeling/libraries/mml/monitoring/Monitor.cpp b/modeling/libraries/mml/monitoring/Monitor.cpp
index e160eb7..6ab77a4 100644
--- a/modeling/libraries/mml/monitoring/Monitor.cpp
+++ b/modeling/libraries/mml/monitoring/Monitor.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Monitor.h b/modeling/libraries/mml/monitoring/Monitor.h
index 76e3684..3ad9314 100644
--- a/modeling/libraries/mml/monitoring/Monitor.h
+++ b/modeling/libraries/mml/monitoring/Monitor.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,7 @@
// Monitor includes
#include "MonitoringManager.h"
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Reference includes
#include "Reference.h"
@@ -77,7 +77,7 @@ public:
/// calculate current followed data and store them in values vector
virtual void calculate()=0;
/// write data stored in values vector into mmlOut file
- void write();
+ virtual void write();
int getIndex();
double getStartAt();
diff --git a/modeling/libraries/mml/monitoring/MonitorComputingTime.cpp b/modeling/libraries/mml/monitoring/MonitorComputingTime.cpp
index 73f18a0..d0a3eb1 100644
--- a/modeling/libraries/mml/monitoring/MonitorComputingTime.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorComputingTime.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorComputingTime.h b/modeling/libraries/mml/monitoring/MonitorComputingTime.h
index 8b3a1e0..9d290aa 100644
--- a/modeling/libraries/mml/monitoring/MonitorComputingTime.h
+++ b/modeling/libraries/mml/monitoring/MonitorComputingTime.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorDisplacement.cpp b/modeling/libraries/mml/monitoring/MonitorDisplacement.cpp
index e3bfe98..ebafafd 100644
--- a/modeling/libraries/mml/monitoring/MonitorDisplacement.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorDisplacement.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorDisplacement.h b/modeling/libraries/mml/monitoring/MonitorDisplacement.h
index 69342c0..4b2c33a 100644
--- a/modeling/libraries/mml/monitoring/MonitorDisplacement.h
+++ b/modeling/libraries/mml/monitoring/MonitorDisplacement.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceX.cpp b/modeling/libraries/mml/monitoring/MonitorDistanceX.cpp
index e65ddfa..a0b06d5 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceX.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceX.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceX.h b/modeling/libraries/mml/monitoring/MonitorDistanceX.h
index d84e223..8bcfe5a 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceX.h
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceX.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,7 +30,7 @@
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceY.cpp b/modeling/libraries/mml/monitoring/MonitorDistanceY.cpp
index 21453f2..a10e20a 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceY.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceY.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceY.h b/modeling/libraries/mml/monitoring/MonitorDistanceY.h
index 041d3ab..c4dd794 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceY.h
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceY.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceZ.cpp b/modeling/libraries/mml/monitoring/MonitorDistanceZ.cpp
index bfa0b95..f972eb2 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceZ.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceZ.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorDistanceZ.h b/modeling/libraries/mml/monitoring/MonitorDistanceZ.h
index 519bdf4..7e920ff 100644
--- a/modeling/libraries/mml/monitoring/MonitorDistanceZ.h
+++ b/modeling/libraries/mml/monitoring/MonitorDistanceZ.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorFactory.cpp b/modeling/libraries/mml/monitoring/MonitorFactory.cpp
index 532e68a..cd6bd8d 100644
--- a/modeling/libraries/mml/monitoring/MonitorFactory.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorFactory.h b/modeling/libraries/mml/monitoring/MonitorFactory.h
index 933d403..6ae617d 100644
--- a/modeling/libraries/mml/monitoring/MonitorFactory.h
+++ b/modeling/libraries/mml/monitoring/MonitorFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#define MMLMonitorDisplayFactory_H
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "MonitorGeometricDeviation.h"
#include "MonitorPosition.h"
#include "MonitorRen.h"
diff --git a/modeling/libraries/mml/monitoring/MonitorForce.cpp b/modeling/libraries/mml/monitoring/MonitorForce.cpp
index a8285ce..14dac22 100644
--- a/modeling/libraries/mml/monitoring/MonitorForce.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorForce.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorForce.h b/modeling/libraries/mml/monitoring/MonitorForce.h
index 881e3a3..fc59609 100644
--- a/modeling/libraries/mml/monitoring/MonitorForce.h
+++ b/modeling/libraries/mml/monitoring/MonitorForce.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.cpp b/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.cpp
index cbf3e7c..c84c0ee 100644
--- a/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.h b/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.h
index 60e9ddc..945122a 100644
--- a/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.h
+++ b/modeling/libraries/mml/monitoring/MonitorGeometricDeviation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorNormDisplacement.cpp b/modeling/libraries/mml/monitoring/MonitorNormDisplacement.cpp
index e19483f..43f51d3 100644
--- a/modeling/libraries/mml/monitoring/MonitorNormDisplacement.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorNormDisplacement.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorNormDisplacement.h b/modeling/libraries/mml/monitoring/MonitorNormDisplacement.h
index 13f2d90..c7f5549 100644
--- a/modeling/libraries/mml/monitoring/MonitorNormDisplacement.h
+++ b/modeling/libraries/mml/monitoring/MonitorNormDisplacement.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.cpp b/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.cpp
index 64d7f21..a61b530 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.h b/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.h
index 650a4a6..70477be 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.h
+++ b/modeling/libraries/mml/monitoring/MonitorPointFinalSetDistance.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorPointSetDistance.cpp b/modeling/libraries/mml/monitoring/MonitorPointSetDistance.cpp
index ab12e6e..404ab6d 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointSetDistance.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorPointSetDistance.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorPointSetDistance.h b/modeling/libraries/mml/monitoring/MonitorPointSetDistance.h
index 40a465c..c8f994f 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointSetDistance.h
+++ b/modeling/libraries/mml/monitoring/MonitorPointSetDistance.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.cpp b/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.cpp
index 320e7f1..0394825 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.h b/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.h
index 685be26..e62153b 100644
--- a/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.h
+++ b/modeling/libraries/mml/monitoring/MonitorPointToTriangleMeshDistanceFinal.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorPosition.cpp b/modeling/libraries/mml/monitoring/MonitorPosition.cpp
index 1108af9..8a6caf8 100644
--- a/modeling/libraries/mml/monitoring/MonitorPosition.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorPosition.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorPosition.h b/modeling/libraries/mml/monitoring/MonitorPosition.h
index b611699..54aa5b8 100644
--- a/modeling/libraries/mml/monitoring/MonitorPosition.h
+++ b/modeling/libraries/mml/monitoring/MonitorPosition.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorRen.cpp b/modeling/libraries/mml/monitoring/MonitorRen.cpp
index ebff1c9..46d86eb 100644
--- a/modeling/libraries/mml/monitoring/MonitorRen.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorRen.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorRen.h b/modeling/libraries/mml/monitoring/MonitorRen.h
index f4497a5..41edc97 100644
--- a/modeling/libraries/mml/monitoring/MonitorRen.h
+++ b/modeling/libraries/mml/monitoring/MonitorRen.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorSurface.cpp b/modeling/libraries/mml/monitoring/MonitorSurface.cpp
index 3fc1036..343352a 100644
--- a/modeling/libraries/mml/monitoring/MonitorSurface.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorSurface.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitorSurface.h b/modeling/libraries/mml/monitoring/MonitorSurface.h
index 42109f1..908f8b9 100644
--- a/modeling/libraries/mml/monitoring/MonitorSurface.h
+++ b/modeling/libraries/mml/monitoring/MonitorSurface.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MonitorVolume.cpp b/modeling/libraries/mml/monitoring/MonitorVolume.cpp
index 07a9e91..b3db0ec 100644
--- a/modeling/libraries/mml/monitoring/MonitorVolume.cpp
+++ b/modeling/libraries/mml/monitoring/MonitorVolume.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,6 +24,7 @@
****************************************************************************/
// Monitor includes
#include "MonitorVolume.h"
+#include <iostream>
// -------------------- constructor --------------------
MonitorVolume::MonitorVolume(mml::Monitor* m,MonitoringManager* monitoringManager): Monitor(m,monitoringManager,SCALAR) {}
@@ -35,6 +36,7 @@ MonitorVolume::~MonitorVolume() {}
void MonitorVolume::calculate() {
values.clear();
double volume=0;
+
StructuralComponent *scSimul = dynamic_cast<StructuralComponent *>(monitoringManager->getPml()->getComponentByName(target));
if (scSimul) {
// loop on all structure
@@ -45,6 +47,7 @@ void MonitorVolume::calculate() {
}
}
}
+
values.push_back(volume);
write();
}
@@ -54,3 +57,15 @@ std::string MonitorVolume::getTypeName() {
return "Volume";
}
+// -------------------- write --------------------
+void MonitorVolume::write(){
+ // write data
+ std::string s = "";
+ for (unsigned int i = 0; i < values.size(); i++) {
+ std::ostringstream ss;
+ ss << values[i];
+ s = s + ss.str() + " ";
+ }
+ mappedObject->data(s);
+}
+
diff --git a/modeling/libraries/mml/monitoring/MonitorVolume.h b/modeling/libraries/mml/monitoring/MonitorVolume.h
index c419fb7..d2b66e7 100644
--- a/modeling/libraries/mml/monitoring/MonitorVolume.h
+++ b/modeling/libraries/mml/monitoring/MonitorVolume.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <string>
// Monitor includes
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "Monitor.h"
/**
@@ -51,6 +51,8 @@ public:
/// return a string relative to monitor type
std::string getTypeName();
+
+ virtual void write();
};
#endif // MONITOR_MONITORS_MONITORVOLUME_H
diff --git a/modeling/libraries/mml/monitoring/MonitoringManager.cpp b/modeling/libraries/mml/monitoring/MonitoringManager.cpp
index d430cd4..822a289 100644
--- a/modeling/libraries/mml/monitoring/MonitoringManager.cpp
+++ b/modeling/libraries/mml/monitoring/MonitoringManager.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitoringManager.h b/modeling/libraries/mml/monitoring/MonitoringManager.h
index 55ef683..84d7b65 100644
--- a/modeling/libraries/mml/monitoring/MonitoringManager.h
+++ b/modeling/libraries/mml/monitoring/MonitoringManager.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,8 +32,8 @@
#include <PhysicalModel.h>
#include <Loads.h>
-#include "MonitorIn.hxx"
-#include "MonitorOut.hxx"
+#include <MonitorIn.hxx>
+#include <MonitorOut.hxx>
class Monitor;
class Simulator;
diff --git a/modeling/libraries/mml/monitoring/MonitoringManagerFactory.cpp b/modeling/libraries/mml/monitoring/MonitoringManagerFactory.cpp
index 2637d11..672a846 100644
--- a/modeling/libraries/mml/monitoring/MonitoringManagerFactory.cpp
+++ b/modeling/libraries/mml/monitoring/MonitoringManagerFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MonitoringManagerFactory.h b/modeling/libraries/mml/monitoring/MonitoringManagerFactory.h
index 94a54aa..288ff13 100644
--- a/modeling/libraries/mml/monitoring/MonitoringManagerFactory.h
+++ b/modeling/libraries/mml/monitoring/MonitoringManagerFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MultipleCriterion.cpp b/modeling/libraries/mml/monitoring/MultipleCriterion.cpp
index 789fdb8..8fbc1d7 100644
--- a/modeling/libraries/mml/monitoring/MultipleCriterion.cpp
+++ b/modeling/libraries/mml/monitoring/MultipleCriterion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MultipleCriterion.h b/modeling/libraries/mml/monitoring/MultipleCriterion.h
index 06fa0a0..fed43d8 100644
--- a/modeling/libraries/mml/monitoring/MultipleCriterion.h
+++ b/modeling/libraries/mml/monitoring/MultipleCriterion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,7 +29,7 @@
#include <vector>
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "StoppingCriterion.h"
/**
diff --git a/modeling/libraries/mml/monitoring/MultipleCriterionFactory.cpp b/modeling/libraries/mml/monitoring/MultipleCriterionFactory.cpp
index fc633ff..66a5219 100644
--- a/modeling/libraries/mml/monitoring/MultipleCriterionFactory.cpp
+++ b/modeling/libraries/mml/monitoring/MultipleCriterionFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/MultipleCriterionFactory.h b/modeling/libraries/mml/monitoring/MultipleCriterionFactory.h
index 77e3f60..4eb937a 100644
--- a/modeling/libraries/mml/monitoring/MultipleCriterionFactory.h
+++ b/modeling/libraries/mml/monitoring/MultipleCriterionFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_MULTIPLECRITERIAFACTORY_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_MULTIPLECRITERIAFACTORY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "MultipleCriterion.h"
diff --git a/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.cpp b/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.cpp
index 36978da..309e5a6 100644
--- a/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.cpp
+++ b/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.h b/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.h
index 9b1c32c..1fbc24c 100644
--- a/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.h
+++ b/modeling/libraries/mml/monitoring/NonInteractiveMonitoringManager.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,8 +30,8 @@
#include <vector>
// Monitor includes
-#include "MonitorIn.hxx"
-#include "MonitorOut.hxx"
+#include <MonitorIn.hxx>
+#include <MonitorOut.hxx>
#include "MonitoringManager.h"
#include "Monitor.h"
diff --git a/modeling/libraries/mml/monitoring/NonInteractiveSimulator.cpp b/modeling/libraries/mml/monitoring/NonInteractiveSimulator.cpp
index 27d36a5..e1c528a 100644
--- a/modeling/libraries/mml/monitoring/NonInteractiveSimulator.cpp
+++ b/modeling/libraries/mml/monitoring/NonInteractiveSimulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/NonInteractiveSimulator.h b/modeling/libraries/mml/monitoring/NonInteractiveSimulator.h
index 321824d..854f1ec 100644
--- a/modeling/libraries/mml/monitoring/NonInteractiveSimulator.h
+++ b/modeling/libraries/mml/monitoring/NonInteractiveSimulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/OrMultipleCriterion.cpp b/modeling/libraries/mml/monitoring/OrMultipleCriterion.cpp
index 7551249..3bf8d2a 100644
--- a/modeling/libraries/mml/monitoring/OrMultipleCriterion.cpp
+++ b/modeling/libraries/mml/monitoring/OrMultipleCriterion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/OrMultipleCriterion.h b/modeling/libraries/mml/monitoring/OrMultipleCriterion.h
index c6c6778..fa703f1 100644
--- a/modeling/libraries/mml/monitoring/OrMultipleCriterion.h
+++ b/modeling/libraries/mml/monitoring/OrMultipleCriterion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <vector>
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "MultipleCriterion.h"
/**
diff --git a/modeling/libraries/mml/monitoring/ParametersWriter.cpp b/modeling/libraries/mml/monitoring/ParametersWriter.cpp
index 4fbc49c..6cf9af9 100644
--- a/modeling/libraries/mml/monitoring/ParametersWriter.cpp
+++ b/modeling/libraries/mml/monitoring/ParametersWriter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/ParametersWriter.h b/modeling/libraries/mml/monitoring/ParametersWriter.h
index 2bb8250..e9574fa 100644
--- a/modeling/libraries/mml/monitoring/ParametersWriter.h
+++ b/modeling/libraries/mml/monitoring/ParametersWriter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Position.cpp b/modeling/libraries/mml/monitoring/Position.cpp
index 89fe5f0..3177a7e 100644
--- a/modeling/libraries/mml/monitoring/Position.cpp
+++ b/modeling/libraries/mml/monitoring/Position.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,11 +27,21 @@
#include "Position.h"
// Stopping criteria includes
#include "Tools.h"
+#include "AtomIterator.h"
#include <iostream>
// -------------------- constructor --------------------
Position::Position(mml::Position* c,MonitoringManager* monitoringManager, MultipleCriterion* parent): Criterion(c,monitoringManager,parent) {
+
+ if (c->target().present()) {
+ target=c->target().get();
+ }
+ else {
+ // if target is not provided, use all atoms
+ target = monitoringManager->getPml()->getAtoms()->getName();
+ }
+
switch (c->unit()) {
case mml::PositionUnit::nm:
factor = 1000000;
@@ -56,9 +66,13 @@ void Position::calculate() {
double pos[3];
double posOld[3];
// Iteration over all atoms
- for (unsigned int i = 0; i < pml->getAtoms()->getNumberOfStructures(); i++) {
- int index =pml->getAtoms()->getStructure(i)->getIndex();
- pml->getAtom(index)->getPosition(pos);
+ AtomIterator it=AtomIterator(monitoringManager->getPml(),target);
+ for (it.begin(); !it.end(); it.next()) {
+ //for (unsigned int i = 0; i < pml->getAtoms()->getNumberOfStructures(); i++) {
+ int index = it.currentAtom()->getIndex();
+ //int index =pml->getAtoms()->getStructure(i)->getIndex();
+ it.currentAtom()->getPosition(pos);
+ //pml->getAtom(index)->getPosition(pos);
monitoringManager->getOldPosition(posOld,index);
values.push_back(distance(pos, posOld)*factor);
}
diff --git a/modeling/libraries/mml/monitoring/Position.h b/modeling/libraries/mml/monitoring/Position.h
index 115dd85..960d6c1 100644
--- a/modeling/libraries/mml/monitoring/Position.h
+++ b/modeling/libraries/mml/monitoring/Position.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_POSITION_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_POSITION_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
@@ -53,6 +53,9 @@ public:
private:
/// calculate stopping criteria data and store it into values vector
void calculate();
+
+ /// the monitor targets describe as an LML TargetList string (e.g. "1-4,5"), @see TargetList
+ std::string target;
};
#endif // STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_POSITION_H
diff --git a/modeling/libraries/mml/monitoring/PostWriter.cpp b/modeling/libraries/mml/monitoring/PostWriter.cpp
index b5400e8..c01ca3b 100644
--- a/modeling/libraries/mml/monitoring/PostWriter.cpp
+++ b/modeling/libraries/mml/monitoring/PostWriter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/PostWriter.h b/modeling/libraries/mml/monitoring/PostWriter.h
index fd2cdd4..2ad2616 100644
--- a/modeling/libraries/mml/monitoring/PostWriter.h
+++ b/modeling/libraries/mml/monitoring/PostWriter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/PrepWriter.cpp b/modeling/libraries/mml/monitoring/PrepWriter.cpp
index 9c82b62..40b9014 100644
--- a/modeling/libraries/mml/monitoring/PrepWriter.cpp
+++ b/modeling/libraries/mml/monitoring/PrepWriter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/PrepWriter.h b/modeling/libraries/mml/monitoring/PrepWriter.h
index e91caa2..61c087a 100644
--- a/modeling/libraries/mml/monitoring/PrepWriter.h
+++ b/modeling/libraries/mml/monitoring/PrepWriter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Reference.cpp b/modeling/libraries/mml/monitoring/Reference.cpp
index 5679d0c..efc8c76 100644
--- a/modeling/libraries/mml/monitoring/Reference.cpp
+++ b/modeling/libraries/mml/monitoring/Reference.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Reference.h b/modeling/libraries/mml/monitoring/Reference.h
index 8b47711..4eee3ee 100644
--- a/modeling/libraries/mml/monitoring/Reference.h
+++ b/modeling/libraries/mml/monitoring/Reference.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Simulator.cpp b/modeling/libraries/mml/monitoring/Simulator.cpp
index 9ac54df..c03317d 100644
--- a/modeling/libraries/mml/monitoring/Simulator.cpp
+++ b/modeling/libraries/mml/monitoring/Simulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Simulator.h b/modeling/libraries/mml/monitoring/Simulator.h
index 57a7791..afadcbf 100644
--- a/modeling/libraries/mml/monitoring/Simulator.h
+++ b/modeling/libraries/mml/monitoring/Simulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SimulatorFactory.cpp b/modeling/libraries/mml/monitoring/SimulatorFactory.cpp
index 60885c8..60fb174 100644
--- a/modeling/libraries/mml/monitoring/SimulatorFactory.cpp
+++ b/modeling/libraries/mml/monitoring/SimulatorFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SimulatorFactory.h b/modeling/libraries/mml/monitoring/SimulatorFactory.h
index a017328..d7b0675 100644
--- a/modeling/libraries/mml/monitoring/SimulatorFactory.h
+++ b/modeling/libraries/mml/monitoring/SimulatorFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SimulatorWidget.cpp b/modeling/libraries/mml/monitoring/SimulatorWidget.cpp
index 4306cce..d4daa07 100644
--- a/modeling/libraries/mml/monitoring/SimulatorWidget.cpp
+++ b/modeling/libraries/mml/monitoring/SimulatorWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SimulatorWidget.h b/modeling/libraries/mml/monitoring/SimulatorWidget.h
index 86eedb5..7c076f2 100644
--- a/modeling/libraries/mml/monitoring/SimulatorWidget.h
+++ b/modeling/libraries/mml/monitoring/SimulatorWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SofaSimulator.cpp b/modeling/libraries/mml/monitoring/SofaSimulator.cpp
index e2e289a..5529b18 100644
--- a/modeling/libraries/mml/monitoring/SofaSimulator.cpp
+++ b/modeling/libraries/mml/monitoring/SofaSimulator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,9 +30,10 @@
#include <sofa/simulation/common/xml/initXml.h>
#include <sofa/component/init.h>
+#include <sofa/helper/Utils.h>
+#include <sofa/helper/system/PluginManager.h>
#ifdef SOFA_1_0_RC1
-// FIXME: check if this is really needed!
#include <sofa/simulation/common/xml/initXml.h>
#include <sofa/simulation/common/Node.h>
#include <sofa/simulation/tree/TreeSimulation.h>
@@ -74,32 +75,25 @@ bool sofaRegistered = SimulatorFactory::getInstance()->registerClass<SofaSimulat
SofaSimulator::SofaSimulator( MonitoringManager* monitoringManager ): InteractiveSimulator( monitoringManager ) {
- string mshFile;
// check for Sofa scn
- scnFile = monitoringManager->getPmlFileName();
- string::size_type pLast = scnFile.rfind( "." );
-
- if( pLast != string::npos ) {
- scnFile.erase( pLast );
- mshFile = string( scnFile );
- mshFile += ".msh";
- scnFile += ".scn";
- }
-
+ QFileInfo mmlFileInfo = QFileInfo(monitoringManager->getMmlFileName().c_str());
+ QString scnFileName = mmlFileInfo.absolutePath() + "/" + mmlFileInfo.baseName() + ".scn";
+ scnFile = scnFileName.toStdString();
// if scn file already exist, use this file
ifstream iscn( scnFile.c_str() );
if( !iscn ) {
+ // scn file do not exist in the same directory, create one in temp directory
+ scnFileName = QDir::tempPath() + "/" + mmlFileInfo.baseName() + ".scn";
+ scnFile = scnFileName.toStdString();
- //scn file do not exist in pml directory, create one
- //TODO? add simulator file path to mml? do not create if specified?
-
- //create msh from pmlFile
+ // create msh from pmlFile in temporary directory as well
+ QString mshFileName = QDir::tempPath() + "/" + QFileInfo(monitoringManager->getPmlFileName().c_str()).baseName() + ".msh";
int type = 0;
PhysicalModel* pml = monitoringManager->getPml();
ofstream msh;
- msh.open( mshFile.c_str(), ios::out );
+ msh.open( mshFileName.toStdString().c_str(), ios::out );
//create nodes
msh << "$NOD" << endl;
@@ -115,7 +109,6 @@ SofaSimulator::SofaSimulator( MonitoringManager* monitoringManager ): Interactiv
msh << "$ENDNOD" << endl;
-
//create elements if an "Elements" components exists
Component *elements = pml->getComponentByName( "Elements" );
@@ -181,7 +174,7 @@ SofaSimulator::SofaSimulator( MonitoringManager* monitoringManager ): Interactiv
// to choose a possible modeling techniques we assume that only one type of elements is used
ofstream scn;
scn.open( scnFile.c_str(), ios::out );
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
scn << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" << endl;
scn << "<!-- Created from " << monitoringManager->getPmlFileName() << " by CamiTK/mml -->" << endl;
scn << "<Node name=\"Root\" gravity=\"0 0 0\" dt=\"" << monitoringManager->getDt() << "\" >" << endl;
@@ -197,7 +190,7 @@ SofaSimulator::SofaSimulator( MonitoringManager* monitoringManager ): Interactiv
scn << " <EulerImplicit name=\"cg_odesolver\" printLog=\"false\" />" << endl;
scn << " <CGLinearSolver iterations=\"25\" name=\"linear solver\" tolerance=\"1.0e-9\" threshold=\"1.0e-9\" />" << endl;
scn << " <!-- mesh -->" << endl;
- scn << " <MeshGmshLoader name=\"meshLoader\" filename=\"" << mshFile << "\" />" << endl;
+ scn << " <MeshGmshLoader name=\"meshLoader\" filename=\"" << mshFileName.toStdString() << "\" />" << endl;
scn << " <Mesh src=\"@meshLoader\" />" << endl;
scn << " <!-- mechanical object -->" << endl;
scn << " <MechanicalObject src=\"@meshLoader\" />" << endl;
@@ -298,13 +291,51 @@ SofaSimulator::~SofaSimulator() {
// -------------------- build --------------------
void SofaSimulator::build() {
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
- sofa::helper::system::DataRepository.addFirstPath( string( SOFA_PATH ) + "/share" );
- sofa::helper::system::DataRepository.addFirstPath( string( SOFA_PATH ) + "/examples" );
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
+ // retrieve plugins
+ sofa::component::init();
+ sofa::simulation::xml::initXml();
+
+ // mimicking sofa set/get path methods using local variable names
+ const std::string sofaPathPrefix = string( SOFA_BUILD_DIR );
+#ifdef WIN32
+ const std::string pluginDir = sofaPathPrefix;
+#else
+ const std::string pluginDir = sofaPathPrefix + "/lib";
+#endif
+ sofa::helper::system::PluginRepository.addFirstPath( pluginDir );
+
+ // Initialise paths
+ const std::string configDirectoryPath = sofaPathPrefix + "/config";
+ const std::string screenshotDirectoryPath = sofaPathPrefix + "/screenshots";
+
+ // manage plugins from plugin file loadedPlugins.ini
+ // This file can be found in the build path.
+ // Beware that this file can only be setup/initialized/populated by runSofa application (in Edit -> Plugin Manager menu)
+ // or sofa modeler.
+ // Simulate the initialization of m_pluginMap by a Sofa GUI application
+ // Next line is extracted from SofaPluginManager::loadPluginsFromIniFile()
+ std::string path = configDirectoryPath + "/loadedPlugins.ini";
+ sofa::helper::system::PluginManager::getInstance().readFromIniFile( path);
+
+ sofa::helper::system::PluginManager::getInstance().init();
+
+ // -- from GUIManager::Init
+ // double init!
+ sofa::component::init();
+ sofa::simulation::xml::initXml();
+ // from SOFA_SOURCE_DIR find the directory to share and examples files (do not use the etc/sofa.ini file
+ sofa::helper::system::DataRepository.addFirstPath( string( SOFA_SOURCE_DIR ) + "/share" );
+ sofa::helper::system::DataRepository.addFirstPath( string( SOFA_SOURCE_DIR ) + "/examples" );
+
+ // look for the scn file
QFileInfo scnFileInfo( scnFile.c_str() );
+ /*TODO CLEANUP
+ std::string fileName = sofa::helper::system::DataRepository.getFile(scnFileInfo.absoluteDir().canonicalPath().toStdString());
+ */
sofa::helper::system::DataRepository.addFirstPath( scnFileInfo.absoluteDir().canonicalPath().toStdString() );
- /* std::cout << "DataRepository is now: " << std::endl;
+ /* TODO CLEANUP std::cout << "DataRepository is now: " << std::endl;
const std::vector< std::string > paths = sofa::helper::system::DataRepository.getPaths();
std::copy( &paths[0], &paths[paths.size()], ostream_iterator<string>(cout, " "));
*/
@@ -320,10 +351,10 @@ void SofaSimulator::build() {
#endif
//-- load the SOFA scn
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
- //preRC1 (svn)
- groot = sofa::core::objectmodel::SPtr_dynamic_cast<sofa::simulation::Node>( sofa::simulation::tree::getSimulation()->load( scnFile.c_str() ) );
- //RC1 groot = sofa::core::objectmodel::SPtr_dynamic_cast<sofa::simulation::Node>(sofa::simulation::getSimulation()->load(scnFile.c_str()));
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
+ // strong hypothesis: we don't use SOFA DAG, but sofa tree architecture
+ //groot = sofa::core::objectmodel::SPtr_dynamic_cast<sofa::simulation::Node>( sofa::simulation::tree::getSimulation()->load( fileName.c_str() ) );
+ groot = sofa::core::objectmodel::SPtr_dynamic_cast<sofa::simulation::Node>( sofa::simulation::tree::getSimulation()->load( scnFile.c_str() ) );
#endif
#ifdef MML_SOFA_1_0_BETA4
@@ -331,7 +362,7 @@ void SofaSimulator::build() {
#endif
if( getGNode() == NULL ) {
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
groot = sofa::simulation::tree::getSimulation()->createNewGraph( "" );
#endif
@@ -344,6 +375,11 @@ void SofaSimulator::build() {
// init root
sofa::simulation::tree::getSimulation()->init( getGNode() );
+ // calling sofa::simulation::tree::getSimulation()->reset ( getGNode() ) is not needed as
+ // it is done in runSofa main (sse RealGUI::setScene -> RealGUI::resetScene )
+ // as it will be done automatically when the sofa simulator will be initialized
+ // (see SofaSimulator::init)
+
// sofa scn dt prevails
monitoringManager->setDt( getGNode()->getDt() );
@@ -410,7 +446,12 @@ void SofaSimulator::doMove( double dt ) {
getGNode()->getContext()->setDt( dt );
//-- animate one step
+#ifdef SOFA_STABLE
+ // Warning animate method does not need any dt. 0.0 is always at least used in Sofa v15_03
+ sofa::simulation::tree::getSimulation()->animate( getGNode(), /*dt*/0.0 );
+#else
sofa::simulation::tree::getSimulation()->animate( getGNode(), dt );
+#endif
}
// --------------- getPosition -------------------
@@ -460,7 +501,7 @@ void SofaSimulator::buildConstraints() {
}
}
-#if !defined(SOFA_1_0_RC1) && !defined(SOFA_SVN)
+#if !defined(SOFA_1_0_RC1) && !defined(SOFA_SVN) && !defined(SOFA_STABLE)
delete translations[i];
#endif
}
diff --git a/modeling/libraries/mml/monitoring/SofaSimulator.h b/modeling/libraries/mml/monitoring/SofaSimulator.h
index 7b89106..9714dac 100644
--- a/modeling/libraries/mml/monitoring/SofaSimulator.h
+++ b/modeling/libraries/mml/monitoring/SofaSimulator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,6 +32,7 @@
#include <sofa/simulation/tree/TreeSimulation.h>
#include <sofa/component/container/MechanicalObject.h>
#include <sofa/defaulttype/VecTypes.h>
+#include <sofa/simulation/common/Node.h>
#include <sofa/simulation/tree/GNode.h>
// simplification of sofa interface
@@ -131,7 +132,7 @@ private:
void buildConstraints();
/// the sofa graph node root
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
sofa::simulation::Node::SPtr groot;
#endif
@@ -164,7 +165,7 @@ inline sofa::simulation::Node* SofaSimulator::getGNode() {
//-- TODO build a sofaGRoot using the nodes
}
-#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN)
+#if defined(SOFA_1_0_RC1) || defined(SOFA_SVN) || defined(SOFA_STABLE)
return groot.get();
#endif
diff --git a/modeling/libraries/mml/monitoring/SofaWidget.cpp b/modeling/libraries/mml/monitoring/SofaWidget.cpp
index 31e1a5a..1b682e9 100644
--- a/modeling/libraries/mml/monitoring/SofaWidget.cpp
+++ b/modeling/libraries/mml/monitoring/SofaWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -88,13 +88,13 @@ void SofaWidget::runSofa() {
} else {
folder=".";
}
- p->setWorkingDirectory( tr(SOFA_PATH) + tr("/bin/") );
+ p->setWorkingDirectory( tr(SOFA_BUILD_DIR) + tr("/bin/") );
connect(p, SIGNAL(finished(int)), this, SLOT(sofaExited()));
QProcessEnvironment env = QProcessEnvironment::systemEnvironment();
- env.insert("LD_LIBRARY_PATH", env.value("LD_LIBRARY_PATH") + ":" + SOFA_PATH + "/lib/linux/"); //TODO if win32...
+ env.insert("LD_LIBRARY_PATH", env.value("LD_LIBRARY_PATH") + ":" + SOFA_BUILD_DIR + "/lib/linux/"); //TODO if win32...
p->setProcessEnvironment(env);
- p->start(tr(SOFA_PATH) + tr("/bin/runSofa"),QStringList() << temp);
+ p->start(tr(SOFA_BUILD_DIR) + tr("/bin/runSofa"),QStringList() << temp);
}
diff --git a/modeling/libraries/mml/monitoring/SofaWidget.h b/modeling/libraries/mml/monitoring/SofaWidget.h
index 30e4c07..06df0bb 100644
--- a/modeling/libraries/mml/monitoring/SofaWidget.h
+++ b/modeling/libraries/mml/monitoring/SofaWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SoluWriter.cpp b/modeling/libraries/mml/monitoring/SoluWriter.cpp
index 5613e33..08b9c44 100644
--- a/modeling/libraries/mml/monitoring/SoluWriter.cpp
+++ b/modeling/libraries/mml/monitoring/SoluWriter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SoluWriter.h b/modeling/libraries/mml/monitoring/SoluWriter.h
index c551540..c07eda5 100644
--- a/modeling/libraries/mml/monitoring/SoluWriter.h
+++ b/modeling/libraries/mml/monitoring/SoluWriter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/StoppingCriterion.cpp b/modeling/libraries/mml/monitoring/StoppingCriterion.cpp
index f54b02d..6eaa194 100644
--- a/modeling/libraries/mml/monitoring/StoppingCriterion.cpp
+++ b/modeling/libraries/mml/monitoring/StoppingCriterion.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/StoppingCriterion.h b/modeling/libraries/mml/monitoring/StoppingCriterion.h
index efa772d..78366f4 100644
--- a/modeling/libraries/mml/monitoring/StoppingCriterion.h
+++ b/modeling/libraries/mml/monitoring/StoppingCriterion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,7 +31,7 @@
#include <vector>
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
#include "MonitoringManager.h"
diff --git a/modeling/libraries/mml/monitoring/StoppingCriterionFactory.cpp b/modeling/libraries/mml/monitoring/StoppingCriterionFactory.cpp
index fc2bb86..2f3d12c 100644
--- a/modeling/libraries/mml/monitoring/StoppingCriterionFactory.cpp
+++ b/modeling/libraries/mml/monitoring/StoppingCriterionFactory.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/StoppingCriterionFactory.h b/modeling/libraries/mml/monitoring/StoppingCriterionFactory.h
index 382090f..d0577ef 100644
--- a/modeling/libraries/mml/monitoring/StoppingCriterionFactory.h
+++ b/modeling/libraries/mml/monitoring/StoppingCriterionFactory.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIONFACTORY_H
#define STOPPINGCRITERION_STOPPINGCRITERIONFACTORY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "StoppingCriterion.h"
diff --git a/modeling/libraries/mml/monitoring/SurfaceExtractor.cpp b/modeling/libraries/mml/monitoring/SurfaceExtractor.cpp
index a20ad36..7ee08b1 100644
--- a/modeling/libraries/mml/monitoring/SurfaceExtractor.cpp
+++ b/modeling/libraries/mml/monitoring/SurfaceExtractor.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/SurfaceExtractor.h b/modeling/libraries/mml/monitoring/SurfaceExtractor.h
index dbee4f1..0962125 100644
--- a/modeling/libraries/mml/monitoring/SurfaceExtractor.h
+++ b/modeling/libraries/mml/monitoring/SurfaceExtractor.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Threshold.cpp b/modeling/libraries/mml/monitoring/Threshold.cpp
index 6c1f86c..39c5ec0 100644
--- a/modeling/libraries/mml/monitoring/Threshold.cpp
+++ b/modeling/libraries/mml/monitoring/Threshold.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Threshold.h b/modeling/libraries/mml/monitoring/Threshold.h
index e5744e1..5dcf39e 100644
--- a/modeling/libraries/mml/monitoring/Threshold.h
+++ b/modeling/libraries/mml/monitoring/Threshold.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_THRESHOLD_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_THRESHOLD_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Method.h"
diff --git a/modeling/libraries/mml/monitoring/TimeMonitoring.cpp b/modeling/libraries/mml/monitoring/TimeMonitoring.cpp
index aecf043..bf8b682 100644
--- a/modeling/libraries/mml/monitoring/TimeMonitoring.cpp
+++ b/modeling/libraries/mml/monitoring/TimeMonitoring.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/TimeMonitoring.h b/modeling/libraries/mml/monitoring/TimeMonitoring.h
index fd4717a..3c95224 100644
--- a/modeling/libraries/mml/monitoring/TimeMonitoring.h
+++ b/modeling/libraries/mml/monitoring/TimeMonitoring.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_TIME_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_TIME_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
/**
diff --git a/modeling/libraries/mml/monitoring/TimePeriodThreshold.cpp b/modeling/libraries/mml/monitoring/TimePeriodThreshold.cpp
new file mode 100644
index 0000000..3a9989a
--- /dev/null
+++ b/modeling/libraries/mml/monitoring/TimePeriodThreshold.cpp
@@ -0,0 +1,57 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+// Stopping criteria includes
+#include "TimePeriodThreshold.h"
+
+// -------------------- constructor --------------------
+TimePeriodThreshold::TimePeriodThreshold(mml::TimePeriodThreshold* m): Method(m), mappedObject(m) {
+ value = m->minValue();
+ iterations = m->iterations();
+ increment = iterations;
+}
+
+// ------------------- destructor -------------------
+TimePeriodThreshold::~TimePeriodThreshold() {}
+
+// -------------------- individualTest --------------------
+bool TimePeriodThreshold::individualTest(double tested) {
+ if (tested <= value) {
+ increment--;
+ } else {
+ increment = iterations;
+ }
+ return (increment == 0);
+}
+
+// -------------------- toString --------------------
+std::string TimePeriodThreshold::toString() {
+ std::ostringstream strs;
+ strs << value;
+ std::string str = strs.str();
+
+ return "< " + str;
+}
+
+
diff --git a/modeling/libraries/mml/monitoring/TimePeriodThreshold.h b/modeling/libraries/mml/monitoring/TimePeriodThreshold.h
new file mode 100644
index 0000000..f3c06b3
--- /dev/null
+++ b/modeling/libraries/mml/monitoring/TimePeriodThreshold.h
@@ -0,0 +1,72 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_TIMEPERIODTHRESHOLD_H
+#define STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_TIMEPERIODTHRESHOLD_H
+
+#include <MonitorIn.hxx>
+
+// Stopping criteria includes
+#include "Method.h"
+/**
+ *
+ * @ingroup group_cepmodeling_libraries_mml
+ *
+ * @brief
+ * A TimePeriodThreshold method is a method where individualTest is true when the tested double is true during a time period defined by a number of iterations
+ */
+class TimePeriodThreshold: public Method {
+public:
+ /**
+ * constructor
+ * @param the xsdcxx generated TimePeriodThreshold class
+ */
+ TimePeriodThreshold(mml::TimePeriodThreshold* m);
+ /// destructor
+ ~TimePeriodThreshold();
+
+ /// return true if tested <= value
+ bool individualTest(double tested);
+
+ /// get Method name
+ std::string toString();
+
+private:
+ /// value of the threshold
+ double value;
+
+ /// number of iterations defining the time period
+ int iterations;
+
+ /// Needed to keep an eye on consecutive win
+ int increment;
+
+ /// the xsdcxx object representing TimePeriodThreshold, used for serialization
+ mml::TimePeriodThreshold* mappedObject;
+
+};
+
+#endif // STOPPINGCRITERION_STOPPINGCRITERIA_METHODS_TIMEPERIODTHRESHOLD_H
diff --git a/modeling/libraries/mml/monitoring/Tools.cpp b/modeling/libraries/mml/monitoring/Tools.cpp
index 49fa81d..5146cdf 100644
--- a/modeling/libraries/mml/monitoring/Tools.cpp
+++ b/modeling/libraries/mml/monitoring/Tools.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Tools.h b/modeling/libraries/mml/monitoring/Tools.h
index 29d553a..f14a90c 100644
--- a/modeling/libraries/mml/monitoring/Tools.h
+++ b/modeling/libraries/mml/monitoring/Tools.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
#ifndef TOOLS_TOOLS_H
#define TOOLS_TOOLS_H
-#include "MonitoringModel.hxx"
+#include <MonitoringModel.hxx>
#include "math.h"
/// compute euclidian distance
diff --git a/modeling/libraries/mml/monitoring/TranslationConstraint.cpp b/modeling/libraries/mml/monitoring/TranslationConstraint.cpp
index 66529a4..d4cc9ea 100644
--- a/modeling/libraries/mml/monitoring/TranslationConstraint.cpp
+++ b/modeling/libraries/mml/monitoring/TranslationConstraint.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/TranslationConstraint.h b/modeling/libraries/mml/monitoring/TranslationConstraint.h
index 09d269c..7762e40 100644
--- a/modeling/libraries/mml/monitoring/TranslationConstraint.h
+++ b/modeling/libraries/mml/monitoring/TranslationConstraint.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/TranslationConstraint.inl b/modeling/libraries/mml/monitoring/TranslationConstraint.inl
index 0e3375d..4165744 100644
--- a/modeling/libraries/mml/monitoring/TranslationConstraint.inl
+++ b/modeling/libraries/mml/monitoring/TranslationConstraint.inl
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Velocity.cpp b/modeling/libraries/mml/monitoring/Velocity.cpp
index 5afcb59..37db152 100644
--- a/modeling/libraries/mml/monitoring/Velocity.cpp
+++ b/modeling/libraries/mml/monitoring/Velocity.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mml/monitoring/Velocity.h b/modeling/libraries/mml/monitoring/Velocity.h
index 337f007..b4f5998 100644
--- a/modeling/libraries/mml/monitoring/Velocity.h
+++ b/modeling/libraries/mml/monitoring/Velocity.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#ifndef STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_VELOCITY_H
#define STOPPINGCRITERION_STOPPINGCRITERIA_CRITERIA_VELOCITY_H
-#include "MonitorIn.hxx"
+#include <MonitorIn.hxx>
// Stopping criteria includes
#include "Criterion.h"
/**
diff --git a/modeling/libraries/mml/monitoring/resources/translate/translate_en.ts b/modeling/libraries/mml/monitoring/resources/translate/translate_en.ts
index 7e3ce65..f544f44 100644
--- a/modeling/libraries/mml/monitoring/resources/translate/translate_en.ts
+++ b/modeling/libraries/mml/monitoring/resources/translate/translate_en.ts
@@ -19,12 +19,12 @@
<translation>Appliquer les changements</translation>
</message>
<message>
- <location filename="../../AnsysWidget.cpp" line="55"/>
+ <location filename="../../AnsysWidget.cpp" line="53"/>
<source>Apply scene changes</source>
<translation></translation>
</message>
<message>
- <location filename="../../AnsysWidget.cpp" line="55"/>
+ <location filename="../../AnsysWidget.cpp" line="53"/>
<source>This will save current changes batch file and remake calculation.
Not saved data will be lost.</source>
<translation>Cela sauvera les changements actuels du fichier batch et refera les calculs.
@@ -34,24 +34,24 @@ Les données non sauvées seront perdues.</translation>
<context>
<name>SofaWidget</name>
<message>
- <location filename="../../SofaWidget.cpp" line="70"/>
+ <location filename="../../SofaWidget.cpp" line="68"/>
<source>Apply scene changes</source>
<translation>Appliquer les changements de scene</translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="70"/>
+ <location filename="../../SofaWidget.cpp" line="68"/>
<source>This will save current changes in scn file and reload simulation.
Not saved data will be lost.</source>
<translation>Cela sauvera les changements actuels du fichier scnh et refera la simulation.
Les données non sauvées seront perdues.</translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="94"/>
+ <location filename="../../SofaWidget.cpp" line="91"/>
<source>/bin/</source>
<translation></translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="100"/>
+ <location filename="../../SofaWidget.cpp" line="97"/>
<source>/bin/runSofa</source>
<translation></translation>
</message>
diff --git a/modeling/libraries/mml/monitoring/resources/translate/translate_fr.ts b/modeling/libraries/mml/monitoring/resources/translate/translate_fr.ts
index fe970cd..e90203b 100644
--- a/modeling/libraries/mml/monitoring/resources/translate/translate_fr.ts
+++ b/modeling/libraries/mml/monitoring/resources/translate/translate_fr.ts
@@ -1,6 +1,6 @@
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
+<TS version="2.0" language="fr_FR">
<context>
<name>AnsysWidget</name>
<message>
@@ -19,12 +19,12 @@
<translation>Appliquer les changements</translation>
</message>
<message>
- <location filename="../../AnsysWidget.cpp" line="55"/>
+ <location filename="../../AnsysWidget.cpp" line="53"/>
<source>Apply scene changes</source>
<translation></translation>
</message>
<message>
- <location filename="../../AnsysWidget.cpp" line="55"/>
+ <location filename="../../AnsysWidget.cpp" line="53"/>
<source>This will save current changes batch file and remake calculation.
Not saved data will be lost.</source>
<translation>Cela sauvera les changements actuels du fichier batch et refera les calculs.
@@ -34,24 +34,24 @@ Les données non sauvées seront perdues.</translation>
<context>
<name>SofaWidget</name>
<message>
- <location filename="../../SofaWidget.cpp" line="70"/>
+ <location filename="../../SofaWidget.cpp" line="68"/>
<source>Apply scene changes</source>
<translation>Appliquer les changements de scene</translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="70"/>
+ <location filename="../../SofaWidget.cpp" line="68"/>
<source>This will save current changes in scn file and reload simulation.
Not saved data will be lost.</source>
<translation>Cela sauvera les changements actuels du fichier scnh et refera la simulation.
Les données non sauvées seront perdues.</translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="94"/>
+ <location filename="../../SofaWidget.cpp" line="91"/>
<source>/bin/</source>
<translation></translation>
</message>
<message>
- <location filename="../../SofaWidget.cpp" line="100"/>
+ <location filename="../../SofaWidget.cpp" line="97"/>
<source>/bin/runSofa</source>
<translation></translation>
</message>
diff --git a/modeling/libraries/mml/monitoringgui/CMakeLists.txt b/modeling/libraries/mml/monitoringgui/CMakeLists.txt
new file mode 100644
index 0000000..1c2b61c
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/CMakeLists.txt
@@ -0,0 +1,49 @@
+set(monitoringgui_MOC_SRCS
+ MonitoringGuiManager.h
+ MonitoringDialog.h
+ MonitoringDriver.h
+)
+
+set(monitoringgui_UIS
+ MonitoringDialog.ui
+)
+
+qt5_wrap_ui(monitoringgui_UIS_H ${monitoringgui_UIS})
+# qt4_wrap_cpp(monitoringgui_MOCS ${monitoringgui_MOC_SRCS}) Not needed if AUTOMOC is set to ON (CMake therefore handle moc automatically)
+
+qt5_add_resources(monitoringgui_QRC MonitoringGuiIcons.qrc)
+
+set(monitoringgui_HEADERS_TO_EXPORT
+ MonitoringGuiManager.h
+ MMLMonitoringGUIAPI.h
+ MonitoringDialog.h
+ MonitoringDriver.h
+)
+set(monitoringgui_HEADERS
+ ${monitoringgui_HEADERS_TO_EXPORT}
+ ${monitoringgui_UIS_H}
+ ${monitoringgui_QRC}
+)
+
+set(monitoringgui_SRCS
+ MonitoringGuiManager.cpp
+ MonitoringDialog.cpp
+ MonitoringDriver.cpp
+ ${monitoringgui_HEADERS}
+ ${monitoringgui_MOC_UI}
+)
+
+add_definitions(-DCOMPILE_MML_MONIGORING_GUI_TOOL)
+add_definitions(-DMML_GENERATE_GUI)
+
+# add lib as a camitk tool
+camitk_library( STATIC
+ NEEDS_XSD
+ SOURCES ${monitoringgui_SRCS}
+ NEEDS_CEP_LIBRARIES monitoring mmlschema pml pmlschema lml lmlschema
+ HEADERS_TO_INSTALL ${monitoringgui_HEADERS_TO_EXPORT}
+ INCLUDE_DIRECTORIES ${MML_INCLUDE_DIRECTORIES}
+ NEEDS_QT
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "Allows one to monitor a biomechanical deformation using a GUI."
+)
diff --git a/modeling/libraries/mml/monitoringgui/MMLMonitoringGUIAPI.h b/modeling/libraries/mml/monitoringgui/MMLMonitoringGUIAPI.h
new file mode 100644
index 0000000..952a66a
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MMLMonitoringGUIAPI.h
@@ -0,0 +1,48 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// The following ifdef block is the standard way of creating macros which make exporting
+// from a DLL simpler. All files within this DLL are compiled with the COMPILE_MML_MONIGORING_GUI_TOOL
+// flag defined on the command line. this symbol should not be defined on any project
+// that uses this DLL. This way any other project whose source files include this file see
+// MML_MONITORING_GUI_API functions as being imported from a DLL, wheras this DLL sees symbols
+// defined with this macro as being exported.
+#if defined(_WIN32) // MSVC and mingw
+#ifdef COMPILE_MML_MONIGORING_GUI_TOOL
+#define MML_MONITORING_GUI_API __declspec(dllexport)
+#else
+#define MML_MONITORING_GUI_API __declspec(dllimport)
+#endif
+#else
+// for all other platforms MML_MONITORING_GUI_API is defined to be "nothing"
+#ifndef MML_MONITORING_GUI_API
+#define MML_MONITORING_GUI_API
+#endif
+#endif // MSVC and mingw
+
+//... disabling the warning on windows msvc
+#if defined(_WIN32) && !defined(__MINGW32__) // MSVC only
+#pragma warning( disable : 4251 )
+#endif // MSVC only
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringDialog.cpp b/modeling/libraries/mml/monitoringgui/MonitoringDialog.cpp
new file mode 100644
index 0000000..297a03c
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringDialog.cpp
@@ -0,0 +1,364 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+// monitoring includes
+#include <monitoring/Monitor.h>
+#include <monitoring/StoppingCriterion.h>
+#include <monitoring/Criterion.h>
+#include <monitoring/InteractiveMonitoringManager.h>
+
+// Monitor includes
+#include "MonitoringDialog.h"
+#include "MonitoringDriver.h"
+#include "MonitoringGuiManager.h"
+
+#include "ui_MonitoringDialog.h"
+
+// qt
+#include <QtGui>
+#include <QFileDialog>
+#include <QMessageBox>
+
+// ----------------------- constructor ---------------------------
+MonitoringDialog::MonitoringDialog(MonitoringGuiManager* guiManager, QWidget* parent): QDialog(parent) {
+ ui = new Ui::MonitoringDialog;
+ ui->setupUi(this);
+
+ this->guiManager=guiManager;
+
+ QObject* qobj=guiManager->getDriver();
+ connect(qobj, SIGNAL(doOneStep()), guiManager, SLOT(doOneStep()));
+
+ connect(ui->rewindPushButton, SIGNAL(clicked()), this, SLOT(rewind()));
+ connect(ui->pausePushButton, SIGNAL(clicked()), this, SLOT(pause()));
+ connect(ui->playOneStepPushButton, SIGNAL(clicked()), this, SLOT(simulateOneStep()));
+ connect(ui->playPushButton, SIGNAL(clicked()), this, SLOT(simulate()));
+
+ connect(ui->mmlInBrowsePushButton, SIGNAL(clicked()), this, SLOT(browseMmlIn()));
+ connect(ui->mmlOutSavePushButton, SIGNAL(clicked()), this, SLOT(saveMmlOut()));
+ connect(ui->csvSavePushButton, SIGNAL(clicked()), this, SLOT(saveCsv()));
+ connect(ui->mmlInSavePushButton, SIGNAL(clicked()), this, SLOT(saveMmlIn()));
+ connect(ui->pmlBrowsePushButton, SIGNAL(clicked()), this, SLOT(browsePml()));
+ connect(ui->lmlBrowsePushButton, SIGNAL(clicked()), this, SLOT(browseLml()));
+
+ connect(ui->dtLineEdit,SIGNAL(editingFinished()),this, SLOT(dtModified()));
+ connect(ui->refreshLineEdit,SIGNAL(editingFinished()),this, SLOT(refreshModified()));
+
+ ui->rewindPushButton->setFocusPolicy( Qt::NoFocus );
+ ui->pausePushButton->setFocusPolicy( Qt::NoFocus );
+ ui->playOneStepPushButton->setFocusPolicy( Qt::NoFocus );
+ ui->playPushButton->setFocusPolicy( Qt::NoFocus );
+ ui->mmlInBrowsePushButton->setFocusPolicy( Qt::NoFocus );
+ ui->mmlOutSavePushButton->setFocusPolicy( Qt::NoFocus );
+ ui->mmlInSavePushButton->setFocusPolicy( Qt::NoFocus );
+ ui->pmlBrowsePushButton->setFocusPolicy( Qt::NoFocus );
+ ui->lmlBrowsePushButton->setFocusPolicy( Qt::NoFocus );
+
+ ui->currentFpsLineEdit->setStyleSheet("background: lightgreen");
+ ui->averageFpsLineEdit->setStyleSheet("background: lightgreen");
+ ui->timeLineEdit->setStyleSheet("background: lightgreen");
+
+}
+
+//--------------- Destructor ---------------------------------
+MonitoringDialog::~MonitoringDialog() {
+ // unselect and clear the monitor tab's content.
+ // this allow not to encounter crash when closing the image
+ // see bug 116 : https://forge.imag.fr/tracker/index.php?func=detail&aid=116&group_id=184&atid=792
+ this->ui->monitorsTable->clearContents();
+ QWidget * simulatorWidget = ui->monitoringTabs->widget(3);
+ if (simulatorWidget != NULL) {
+ ui->monitoringTabs->removeTab(ui->monitoringTabs->indexOf(simulatorWidget));
+ delete simulatorWidget;
+ }
+ delete ui;
+ ui = NULL;
+}
+
+//--------------- init ---------------------------------
+void MonitoringDialog::init() {
+ updateAll();
+}
+
+//--------------- enableButtons -----------------------
+void MonitoringDialog::enableButtons(bool enable) {
+ ui->dtLineEdit->setEnabled(enable);
+ ui->refreshLineEdit->setEnabled(enable);
+ ui->pmlBrowsePushButton->setEnabled(enable);
+ ui->lmlBrowsePushButton->setEnabled(enable);
+ ui->lmlLineEdit->setEnabled(enable);
+ ui->pmlLineEdit->setEnabled(enable);
+ ui->mmlOutSavePushButton->setEnabled(enable);
+ ui->mmlInSavePushButton->setEnabled(enable);
+ ui->rewindPushButton->setEnabled(enable);
+ ui->playPushButton->setEnabled(enable);
+ ui->playOneStepPushButton->setEnabled(enable);
+ ui->pausePushButton->setEnabled(enable);
+ ui->currentFpsLineEdit->setEnabled(enable);
+ ui->averageFpsLineEdit->setEnabled(enable);
+ ui->timeLineEdit->setEnabled(enable);
+
+ if (guiManager->getMonitoringManager()) {
+ //an mmlIn file is loaded check if lml and pml is present
+ if (!guiManager->getMonitoringManager()->isLmlPresent()) {
+ ui->lmlBrowsePushButton->setEnabled(false);
+ ui->lmlLineEdit->setEnabled(false);
+ }
+ if (!guiManager->getMonitoringManager()->isPmlPresent()) {
+ ui->pmlBrowsePushButton->setEnabled(false);
+ ui->pmlLineEdit->setEnabled(false);
+ ui->lmlBrowsePushButton->setEnabled(false);
+ ui->lmlLineEdit->setEnabled(false);
+ }
+ }
+}
+
+//--------------- browseMmlIn ---------------------------------
+void MonitoringDialog::browseMmlIn() {
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Open MMLIn"), ".",tr("MML files (*.mml)"));
+ if (!fileName.isEmpty()) {
+ ui->mmlInLineEdit->setText(fileName);
+ guiManager->loadMmlInFile(fileName);
+ }
+}
+
+//--------------- saveMmlOut ---------------------------------
+void MonitoringDialog::saveMmlOut() {
+ QString fileName = QFileDialog::getSaveFileName(this,tr("Save MMLOut"), ".",tr("MML files (*.mml)"));
+ if (!fileName.isEmpty()) {
+ guiManager->saveMmlOutFile(fileName);
+ }
+}
+
+//--------------- saveCsv ---------------------------------
+void MonitoringDialog::saveCsv() {
+ QString fileName = QFileDialog::getSaveFileName(this,tr("Save as Csv"), ".",tr("CSV files (*.csv)"));
+ if (!fileName.isEmpty()) {
+ guiManager->saveCsvFile(fileName);
+ }
+}
+
+//--------------- saveMmlIn ---------------------------------
+void MonitoringDialog::saveMmlIn() {
+ QString fileName = QFileDialog::getSaveFileName(this,tr("Save MMLIn"), ".",tr("MML files (*.mml)"));
+ if (!fileName.isEmpty()) {
+ guiManager->saveMmlInFile(fileName);
+ }
+}
+
+
+//--------------- browseLml ---------------------------------
+void MonitoringDialog::browseLml() {
+ int r=QMessageBox::warning(this,tr("Changing Lml"),tr("Changing lml will reload simulation.\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
+ if (r == QMessageBox::Ok) {
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Open Lml"), ".",tr("LML files (*.lml)"));
+ if (!fileName.isEmpty()) {
+ ui->lmlLineEdit->setText(fileName);
+ guiManager->updateLml(fileName);
+ guiManager->reload();
+ }
+ }
+}
+
+//--------------- browsePml ---------------------------------
+void MonitoringDialog::browsePml() {
+ int r=QMessageBox::warning(this,tr("Changing Pml"),tr("Changing pml will reload simulation.\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
+ if (r == QMessageBox::Ok) {
+ QString fileName = QFileDialog::getOpenFileName(this,tr("Open Pml"), ".",tr("PML files (*.pml)"));
+ if (!fileName.isEmpty()) {
+ ui->pmlLineEdit->setText(fileName);
+ guiManager->updatePml(fileName);
+ guiManager->reload();
+ }
+ }
+}
+
+//--------------- simulateOneStep ---------------------------------
+void MonitoringDialog::simulateOneStep() {
+ guiManager->simulateOneStep();
+}
+
+//--------------- pause ---------------------------------
+void MonitoringDialog::pause() {
+ guiManager->pause();
+}
+
+//--------------- rewind ---------------------------------
+void MonitoringDialog::rewind() {
+ int r=QMessageBox::warning(this,tr("Rewind Simulation"),tr("Rewind simulation?\n Not saved data will be lost."),QMessageBox::Ok,QMessageBox::Cancel);
+ if (r == QMessageBox::Ok) {
+ guiManager->rewind();
+ }
+}
+
+//--------------- simulate() ---------------------------------
+void MonitoringDialog::simulate() {
+ guiManager->simulate();
+}
+
+
+
+//--------------- updateAll ---------------------------------
+void MonitoringDialog::updateAll() {
+ if (guiManager->getMonitoringManager()) {
+
+ enableButtons(true);
+
+ ui->monitorsTab->setEnabled(true);
+
+ updateSimulation();
+ updateMonitors();
+ updateSimulatorWidget();
+ // enable stopping criteria tab only if monitoring manager is interactive
+ if (dynamic_cast<InteractiveMonitoringManager*>(guiManager->getMonitoringManager())) {
+ ui->sCriteriaTab->setEnabled(true);
+ updateStoppingCriteria();
+ }
+ } else { // no mml loaded
+
+ enableButtons(false);
+
+ ui->monitorsTab->setEnabled(false);
+ ui->sCriteriaTab->setEnabled(false);
+ // deleting simulator widget if exists
+ QWidget * simulatorWidget = ui->monitoringTabs->widget(3);
+ if (simulatorWidget != NULL) {
+ ui->monitoringTabs->removeTab(ui->monitoringTabs->indexOf(simulatorWidget));
+ delete simulatorWidget;
+ }
+ }
+}
+
+//--------------- updateMonitors ---------------------------------
+void MonitoringDialog::updateMonitors() {
+ ui->monitorsTable->clearContents();
+ ui->monitorsTable->setSortingEnabled(false);
+ ui->monitorsTable->setRowCount(guiManager->getMonitoringManager()->numberOfMonitor());
+
+ for (unsigned int i = 0; i < guiManager->getMonitoringManager()->numberOfMonitor(); i++) {
+ // get current monitor
+ Monitor* currentMonitor = guiManager->getMonitoringManager()->getMonitor(i);
+
+ // get type of current monitor
+ ui->monitorsTable->setItem(i, 0, new QTableWidgetItem(currentMonitor->getTypeName().c_str()));
+
+ // get target of current monitor
+ ui->monitorsTable->setItem(i, 1, new QTableWidgetItem((currentMonitor->getTargetName().c_str())));
+
+ // get startAt of current monitor
+ QString s;
+ ui->monitorsTable->setItem(i, 2, new QTableWidgetItem(s.setNum(currentMonitor->getStartAt())));
+
+ // get stopAt of current monitor
+ QString s2;
+ ui->monitorsTable->setItem(i, 3, new QTableWidgetItem(s2.setNum(currentMonitor->getStopAt())));
+
+ // get reference of current monitor
+ ui->monitorsTable->setItem(i, 4, new QTableWidgetItem(currentMonitor->getReferenceName().c_str()));
+
+ }
+ emit monitorsChanged();
+}
+
+//--------------- updateSimulation ---------------------------------
+void MonitoringDialog::updateSimulation() {
+ QString s;
+ ui->dtLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getDt()));
+ ui->refreshLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getRefresh()));
+ ui->pmlLineEdit->setText(tr(guiManager->getMonitoringManager()->getPmlFileName().c_str()));
+ ui->lmlLineEdit->setText(tr(guiManager->getMonitoringManager()->getLmlFileName().c_str()));
+ ui->mmlInLineEdit->setText(tr(guiManager->getMonitoringManager()->getMmlFileName().c_str()));
+ ui->timeLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getCurrentTime()));
+ ui->averageFpsLineEdit->setText(s.setNum(guiManager->getMonitoringManager()->getCurrentStep()/guiManager->getMonitoringManager()->getComputingTime()));
+ ui->currentFpsLineEdit->setText(s.setNum(1/guiManager->getMonitoringManager()->getStepComputingTime()));
+}
+
+//--------------- updateStoppingCriteria ---------------------------------
+void MonitoringDialog::updateStoppingCriteria() {
+ ui->sCriteriaTreeWidget->clear();
+
+ InteractiveMonitoringManager* imm=(InteractiveMonitoringManager*)(guiManager->getMonitoringManager());
+ if (imm->getStoppingCriterion()) {
+ QTreeWidgetItem* topItem=createItem(imm->getStoppingCriterion(),NULL);
+ ui->sCriteriaTreeWidget->addTopLevelItem(topItem);
+ }
+
+
+}
+
+//--------------- updateSimulatorWidget ---------------------------------
+void MonitoringDialog::updateSimulatorWidget() {
+ // deleting simulator widget if exists
+ QWidget * simulatorWidget = ui->monitoringTabs->widget(3);
+ if (simulatorWidget != NULL) {
+ ui->monitoringTabs->removeTab(ui->monitoringTabs->indexOf(simulatorWidget));
+ delete simulatorWidget;
+ }
+
+#ifdef MML_GENERATE_GUI
+ simulatorWidget=guiManager->getMonitoringManager()->getSimulator()->getWidget();
+ if (simulatorWidget != NULL) {
+ connect(simulatorWidget,SIGNAL(reload()),guiManager,SLOT(reload()));
+ ui->monitoringTabs->addTab(simulatorWidget,tr("Simulator"));
+ }
+#endif
+}
+
+
+//--------------- createItem ---------------------------------
+QTreeWidgetItem* MonitoringDialog::createItem(StoppingCriterion* sc,QTreeWidgetItem* parent) {
+ QTreeWidgetItem* item=new QTreeWidgetItem(parent);
+ item->setText(0,tr(sc->getName().c_str()));
+ if (sc->getNumberOfChildren()<0) {
+ item->setText(1,tr(((Criterion*)sc)->getMethodString().c_str()));
+ item->setText(2,tr(((Criterion*)sc)->scopeToString().c_str()));
+ item->setText(2,tr(((Criterion*)sc)->scopeToString().c_str()));
+ } else {
+
+ }
+ for (int i = 0; i < sc->getNumberOfChildren(); i++) {
+ item->addChild(createItem(sc->getChild(i),item));
+ }
+ return item;
+}
+
+//--------------- getMmlInFileName ---------------------------------
+QString MonitoringDialog::getMmlInFileName() {
+ return ui->mmlInLineEdit->text();
+}
+
+//--------------- dtModified ---------------------------------
+void MonitoringDialog::dtModified() {
+ guiManager->updateDt(ui->dtLineEdit->text().toDouble());
+}
+
+//--------------- refreshModified ---------------------------------
+void MonitoringDialog::refreshModified() {
+ guiManager->updateRefresh(ui->refreshLineEdit->text().toDouble());
+}
+
+QTableWidget* MonitoringDialog::getMonitorsTableWidget() {
+ return ui->monitorsTable;
+}
+
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringDialog.h b/modeling/libraries/mml/monitoringgui/MonitoringDialog.h
new file mode 100644
index 0000000..5bebf67
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringDialog.h
@@ -0,0 +1,129 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef MONITORINGDIALOG_H
+#define MONITORINGDIALOG_H
+
+#include "MMLMonitoringGUIAPI.h"
+
+#include <QDialog>
+class QTableWidget;
+class QTreeWidgetItem;
+
+namespace Ui {
+class MonitoringDialog;
+}
+
+class MonitoringGuiManager;
+
+class StoppingCriterion;
+
+/**
+ * @ingroup group_cepmodeling_libraries_mml
+ *
+ * @brief
+ * TODO Comment class here
+ *
+ **/
+class /* needed if you monitoringgui is compiled as shared: MML_MONITORING_GUI_API*/ MonitoringDialog : public QDialog {
+ Q_OBJECT
+
+public:
+ /**Default Constructor*/
+ MonitoringDialog(MonitoringGuiManager* guiManager, QWidget* parent = 0);
+ /**Destructor*/
+ virtual ~MonitoringDialog();
+
+ /// initialize dialog
+ void init();
+
+ /// update all tabs
+ void updateAll();
+ /// update monitors tab
+ void updateMonitors();
+ /// update stopping criteria tab
+ void updateStoppingCriteria();
+ /// update simulation tab
+ void updateSimulation();
+ /// update simulator specific widget
+ void updateSimulatorWidget();
+ /// get MmlIn file name
+ QString getMmlInFileName();
+ /// get the monitors table
+ QTableWidget * getMonitorsTableWidget();
+
+public slots:
+ /// Slot called when Browse MmlIn file is clicked
+ void browseMmlIn();
+ /// Slot called when save MmlOut file is clicked
+ void saveMmlOut();
+ /// Slot called when save as csv file is clicked
+ void saveCsv();
+ /// Slot called when save MmlIn file is clicked
+ void saveMmlIn();
+ /// Slot called when Browse Pml file is clicked
+ void browsePml();
+ /// Slot called when Browse Lml file is clicked
+ void browseLml();
+ /// Slot called after dt editing
+ void dtModified();
+ /// Slot called after refresh editing
+ void refreshModified();
+
+ /** do one step of simulation
+ * @return true only if the step was done
+ */
+ /// Slot called when the button Pause is clicked
+ void pause();
+ /// Slot called when the button Play is clicked
+ void simulate();
+ /// Slot called when the next step is clicked
+ void simulateOneStep();
+ /// Slot called when the button Rewind is clicked
+ void rewind();
+
+signals:
+ /// emitted
+ void monitorsChanged();
+
+
+private:
+ /// the ui dialog designed in qtdesigner
+ Ui::MonitoringDialog *ui;
+
+ /// the monitoring manager
+ MonitoringGuiManager* guiManager;
+
+ /// the initial bg color
+ QColor bgColor;
+
+ /// set the rew,play,pause,step buttons enable or not
+ void enableButtons(bool enable);
+
+ ///
+ QTreeWidgetItem* createItem(StoppingCriterion* sc,QTreeWidgetItem* parent);
+};
+
+#endif // MONITORINGDIALOG_H
\ No newline at end of file
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringDialog.ui b/modeling/libraries/mml/monitoringgui/MonitoringDialog.ui
new file mode 100644
index 0000000..04b1f3c
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringDialog.ui
@@ -0,0 +1,762 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>MonitoringDialog</class>
+ <widget class="QWidget" name="MonitoringDialog">
+ <property name="enabled">
+ <bool>true</bool>
+ </property>
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>706</width>
+ <height>768</height>
+ </rect>
+ </property>
+ <property name="cursor">
+ <cursorShape>ArrowCursor</cursorShape>
+ </property>
+ <property name="mouseTracking">
+ <bool>false</bool>
+ </property>
+ <property name="focusPolicy">
+ <enum>Qt::NoFocus</enum>
+ </property>
+ <property name="windowTitle">
+ <string>Simulation</string>
+ </property>
+ <layout class="QGridLayout">
+ <property name="margin">
+ <number>0</number>
+ </property>
+ <property name="spacing">
+ <number>0</number>
+ </property>
+ <item row="0" column="0">
+ <widget class="QFrame" name="frame">
+ <property name="frameShape">
+ <enum>QFrame::NoFrame</enum>
+ </property>
+ <property name="frameShadow">
+ <enum>QFrame::Plain</enum>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_4">
+ <item>
+ <widget class="QTabWidget" name="monitoringTabs">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="currentIndex">
+ <number>2</number>
+ </property>
+ <widget class="QWidget" name="simulationTab">
+ <attribute name="title">
+ <string>Simulation</string>
+ </attribute>
+ <layout class="QVBoxLayout" name="verticalLayout">
+ <item>
+ <layout class="QGridLayout" name="gridLayout_1">
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_2">
+ <property name="text">
+ <string>dt:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="2">
+ <widget class="QLabel" name="label_3">
+ <property name="text">
+ <string>refresh dt:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="3">
+ <widget class="QLineEdit" name="refreshLineEdit"/>
+ </item>
+ <item row="2" column="0">
+ <widget class="QLabel" name="label_6">
+ <property name="text">
+ <string>time:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="2">
+ <widget class="QLabel" name="label_8">
+ <property name="text">
+ <string>current fps:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="1">
+ <widget class="QLineEdit" name="timeLineEdit">
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLineEdit" name="dtLineEdit"/>
+ </item>
+ <item row="3" column="2">
+ <widget class="QLabel" name="label_9">
+ <property name="text">
+ <string>average fps:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="3">
+ <widget class="QLineEdit" name="averageFpsLineEdit">
+ <property name="palette">
+ <palette>
+ <active>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </active>
+ <inactive>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </inactive>
+ <disabled>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </disabled>
+ </palette>
+ </property>
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="3">
+ <widget class="QLineEdit" name="currentFpsLineEdit">
+ <property name="palette">
+ <palette>
+ <active>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </active>
+ <inactive>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </inactive>
+ <disabled>
+ <colorrole role="BrightText">
+ <brush brushstyle="SolidPattern">
+ <color alpha="255">
+ <red>131</red>
+ <green>255</green>
+ <blue>152</blue>
+ </color>
+ </brush>
+ </colorrole>
+ </disabled>
+ </palette>
+ </property>
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>37</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QGridLayout" name="gridLayout_2">
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_4">
+ <property name="text">
+ <string>pml:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="pmlLineEdit">
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="2">
+ <widget class="QPushButton" name="pmlBrowsePushButton">
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_5">
+ <property name="text">
+ <string>lml:</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLineEdit" name="lmlLineEdit">
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="2">
+ <widget class="QPushButton" name="lmlBrowsePushButton">
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_3">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>36</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="monitorsTab">
+ <attribute name="title">
+ <string>Monitors</string>
+ </attribute>
+ <layout class="QHBoxLayout" name="horizontalLayout_6">
+ <item>
+ <widget class="QTableWidget" name="monitorsTable">
+ <property name="autoScroll">
+ <bool>true</bool>
+ </property>
+ <property name="editTriggers">
+ <set>QAbstractItemView::NoEditTriggers</set>
+ </property>
+ <property name="selectionBehavior">
+ <enum>QAbstractItemView::SelectRows</enum>
+ </property>
+ <property name="textElideMode">
+ <enum>Qt::ElideRight</enum>
+ </property>
+ <property name="showGrid">
+ <bool>false</bool>
+ </property>
+ <property name="sortingEnabled">
+ <bool>true</bool>
+ </property>
+ <property name="columnCount">
+ <number>5</number>
+ </property>
+ <attribute name="horizontalHeaderStretchLastSection">
+ <bool>true</bool>
+ </attribute>
+ <column>
+ <property name="text">
+ <string>Type</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Target</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Start At</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Stop At</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Reference</string>
+ </property>
+ </column>
+ </widget>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_2">
+ <item>
+ <widget class="QPushButton" name="monitorsAddPushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Add</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_5">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="monitorsEditPushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Edit</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="monitorsRemovePushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Remove</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_4">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_6">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_7">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="sCriteriaTab">
+ <attribute name="title">
+ <string>Stopping Criteria</string>
+ </attribute>
+ <layout class="QHBoxLayout" name="horizontalLayout_7">
+ <item>
+ <widget class="QTreeWidget" name="sCriteriaTreeWidget">
+ <property name="editTriggers">
+ <set>QAbstractItemView::NoEditTriggers</set>
+ </property>
+ <property name="columnCount">
+ <number>3</number>
+ </property>
+ <column>
+ <property name="text">
+ <string>Type</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Condition</string>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string>Scope</string>
+ </property>
+ </column>
+ </widget>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <widget class="QPushButton" name="sCriteriaAddpushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Add</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_8">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="sCriteriaEditPushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Edit</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="sCriteriaRemovePushButton">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string>Remove</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_9">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_10">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_11">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_5">
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_8">
+ <item>
+ <widget class="QLabel" name="label_7">
+ <property name="text">
+ <string>mml in:</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="mmlInLineEdit">
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="mmlInBrowsePushButton">
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <widget class="QPushButton" name="mmlInSavePushButton">
+ <property name="text">
+ <string>Save mml in</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <widget class="QPushButton" name="mmlOutSavePushButton">
+ <property name="text">
+ <string>Save mml out</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="csvSavePushButton">
+ <property name="text">
+ <string>Save output as .csv</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_9">
+ <item>
+ <widget class="QPushButton" name="rewindPushButton">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="cursor">
+ <cursorShape>PointingHandCursor</cursorShape>
+ </property>
+ <property name="toolTip">
+ <string>rewind simulation</string>
+ </property>
+ <property name="whatsThis">
+ <string>rewind simulation</string>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="icon">
+ <iconset>
+ <normaloff>:/player_rew</normaloff>:/player_rew</iconset>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+R</string>
+ </property>
+ <property name="autoDefault">
+ <bool>false</bool>
+ </property>
+ <property name="flat">
+ <bool>false</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer>
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>150</width>
+ <height>16</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="playPushButton">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="cursor">
+ <cursorShape>PointingHandCursor</cursorShape>
+ </property>
+ <property name="toolTip">
+ <string>play simulation</string>
+ </property>
+ <property name="whatsThis">
+ <string>play simulation</string>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="icon">
+ <iconset>
+ <normaloff>:/player_play</normaloff>:/player_play</iconset>
+ </property>
+ <property name="shortcut">
+ <string>P</string>
+ </property>
+ <property name="checkable">
+ <bool>false</bool>
+ </property>
+ <property name="autoDefault">
+ <bool>false</bool>
+ </property>
+ <property name="default">
+ <bool>false</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="playOneStepPushButton">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="cursor">
+ <cursorShape>PointingHandCursor</cursorShape>
+ </property>
+ <property name="toolTip">
+ <string>play one step</string>
+ </property>
+ <property name="whatsThis">
+ <string>play one step</string>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="icon">
+ <iconset>
+ <normaloff>:/player_end</normaloff>:/player_end</iconset>
+ </property>
+ <property name="shortcut">
+ <string>S</string>
+ </property>
+ <property name="checkable">
+ <bool>false</bool>
+ </property>
+ <property name="autoDefault">
+ <bool>false</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pausePushButton">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="cursor">
+ <cursorShape>PointingHandCursor</cursorShape>
+ </property>
+ <property name="toolTip">
+ <string>pause simulation</string>
+ </property>
+ <property name="whatsThis">
+ <string>pause simulation</string>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="icon">
+ <iconset>
+ <normaloff>:/player_pause</normaloff>:/player_pause</iconset>
+ </property>
+ <property name="autoDefault">
+ <bool>false</bool>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ <layoutdefault spacing="6" margin="11"/>
+ <tabstops>
+ <tabstop>monitoringTabs</tabstop>
+ <tabstop>rewindPushButton</tabstop>
+ <tabstop>playPushButton</tabstop>
+ <tabstop>playOneStepPushButton</tabstop>
+ <tabstop>pausePushButton</tabstop>
+ </tabstops>
+ <resources/>
+ <connections/>
+</ui>
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringDriver.cpp b/modeling/libraries/mml/monitoringgui/MonitoringDriver.cpp
new file mode 100644
index 0000000..5e03941
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringDriver.cpp
@@ -0,0 +1,82 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "MonitoringDriver.h"
+
+#include <qapplication.h>
+#include <qcursor.h>
+#include <limits>
+
+//--------------- Constructor ---------------------------------
+MonitoringDriver::MonitoringDriver(MonitoringGuiManager* guiManager): QObject() {
+ this->guiManager=guiManager;
+ timer = NULL; // not started yet
+}
+
+//--------------- Constructor ---------------------------------
+MonitoringDriver::~MonitoringDriver() {
+ stopTimer();
+ delete timer;
+ timer = NULL;
+}
+
+//--------------- Constructor ---------------------------------
+void MonitoringDriver::init() {
+ // start the timer
+ timer = new QTimer ( this );
+
+ // connect the timer tick signal to play()
+ connect ( timer, SIGNAL ( timeout() ), this, SLOT ( play() ) );
+
+}
+
+//--------------- Constructor ---------------------------------
+void MonitoringDriver::play() {
+ if ( !timer->isActive() ) {
+ // timer wasn't active, action to be done = launch the timer
+ startTimer();
+ } else {
+ // timer is active, action to be done = play one step
+ emit doOneStep();
+ }
+}
+
+//--------------- Constructor ---------------------------------
+void MonitoringDriver::startTimer() {
+ timer->start();
+}
+
+//--------------- Constructor ---------------------------------
+void MonitoringDriver::stopTimer() {
+ timer->stop();
+}
+
+//--------------- Constructor ---------------------------------
+bool MonitoringDriver::isTimerActive() {
+ return timer->isActive();
+}
+
+
+
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringDriver.h b/modeling/libraries/mml/monitoringgui/MonitoringDriver.h
new file mode 100644
index 0000000..b39420a
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringDriver.h
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef MONITORINGSIMULATIONDRIVER_H
+#define MONITORINGSIMULATIONDRIVER_H
+
+#include <QObject>
+#include <qtimer.h>
+
+#include "MonitoringGuiManager.h"
+
+/**
+ * @ingroup group_cepmodeling_libraries_mml
+ *
+ * @brief
+ * TODO Comment class here
+ *
+ **/
+class MonitoringDriver : public QObject {
+
+ Q_OBJECT
+
+public:
+
+ /// Constructor
+ MonitoringDriver (MonitoringGuiManager* guiManager);
+
+ /// Destructor
+ virtual ~MonitoringDriver();
+
+ void init();
+
+ /// starts the timer that will repeatedly call play and emit doOneStep
+ void startTimer();
+
+ /// stop the timer
+ void stopTimer();
+
+ /// is the timer currently running
+ bool isTimerActive();
+
+signals:
+
+ /// signal call when one step is to be performed
+ void doOneStep();
+
+public slots:
+
+ /// Slot called when at each timer tick (i.e. after the same interval of time)
+ void play();
+
+private:
+ /// the monitoring manager
+ MonitoringGuiManager* guiManager;
+
+ /// the simulation timer
+ QTimer *timer;
+
+
+
+};
+
+#endif
\ No newline at end of file
diff --git a/modeling/libraries/mml/applications/gui/MonitoringGuiIcons.qrc b/modeling/libraries/mml/monitoringgui/MonitoringGuiIcons.qrc
similarity index 100%
rename from modeling/libraries/mml/applications/gui/MonitoringGuiIcons.qrc
rename to modeling/libraries/mml/monitoringgui/MonitoringGuiIcons.qrc
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.cpp b/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.cpp
new file mode 100644
index 0000000..2717b9f
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.cpp
@@ -0,0 +1,238 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "MonitoringGuiManager.h"
+
+#include <QtGui>
+#include <QMessageBox>
+#include <QApplication>
+
+#include "MonitoringDialog.h"
+#include "MonitoringDriver.h"
+
+//--------------- Constructor ---------------------------------
+MonitoringGuiManager::MonitoringGuiManager() {
+ Q_INIT_RESOURCE(MonitoringGuiIcons);
+ driver=new MonitoringDriver(this);
+ dialog=new MonitoringDialog(this);
+ monitoringManager=NULL;
+ driver->init();
+ dialog->init();
+ dialog->show();
+ lastRefreshTime=0;
+}
+
+//--------------- Destructor ---------------------------------
+MonitoringGuiManager::~MonitoringGuiManager() {
+ if (driver) {
+ delete driver;
+ driver = NULL;
+ }
+ if (dialog) {
+ delete dialog;
+ dialog = NULL;
+ }
+ if (monitoringManager) {
+ delete monitoringManager;
+ monitoringManager = NULL;
+ }
+ Q_CLEANUP_RESOURCE(MonitoringGuiIcons);
+}
+
+//--------------- getDialog ---------------------------------
+MonitoringDialog* MonitoringGuiManager::getDialog() {
+ return dialog;
+}
+
+//--------------- getDriver ---------------------------------
+MonitoringDriver* MonitoringGuiManager::getDriver() {
+ return driver;
+}
+
+//--------------- getMonitoringManager ---------------------------------
+MonitoringManager* MonitoringGuiManager::getMonitoringManager() {
+ return monitoringManager;
+}
+
+
+//--------------- doOneStep ---------------------------------
+bool MonitoringGuiManager::doOneStep() {
+ if (monitoringManager->checkStop()) {
+ QMessageBox::information(dialog,tr("Simulation finished"),tr("The simulation is finished (Stopping Criterion reached)."),QMessageBox::Ok);
+ driver->stopTimer();
+ return false;
+ } else {
+
+ // As this method is called by a timer, it could happen that the motor
+ // has not finished one step of computation when the timer starts
+ // the method again. This results in a strange state.
+ // waitingForFinish act as a flag to say "wait, wait, we are
+ // already computing a step, we can't do many at the same time,
+ // take your chance next time".
+ // That allows the timer to be regulated by the motor computation time.
+ static bool waitingToFinish = false;
+
+ if (waitingToFinish) {
+ return false; // bye bye, we are too busy at the moment, we haven't done anything
+ }
+
+ waitingToFinish = true;
+
+ // if t is ok, play it
+
+ // update cursor
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+
+ // show the progress
+ //TODO
+
+ // do simulation steps until the next refresh time is reached
+ monitoringManager->doMove();
+
+ // update cursor
+ QApplication::restoreOverrideCursor();
+
+ //emit changed only if we have to refresh
+ if (monitoringManager->getCurrentTime()>=lastRefreshTime+monitoringManager->getRefresh()) {
+ emit changed();
+ lastRefreshTime=monitoringManager->getCurrentTime();
+ }
+ // release the flag, so that next time this method is called,
+ // a new step could be computed
+ waitingToFinish = false;
+ // update view
+ dialog->updateSimulation();;
+ return true; // bye bye, we have done one step
+ }
+}
+
+//--------------- simulate ---------------------------------
+void MonitoringGuiManager::simulate() {
+ if (!driver->isTimerActive()) {
+ // timer wasn't active, action to be done = launch the timer
+ driver->startTimer();
+ } else {
+ // timer is active, action to be done = play one step
+ doOneStep();
+ }
+}
+
+//--------------- simulateOneStep ---------------------------------
+void MonitoringGuiManager::simulateOneStep() {
+ // force one step to be done
+ if (!monitoringManager->checkStop()) {
+ while (!doOneStep())
+ ;
+ } else {
+ doOneStep(); // just to have the message box
+ }
+}
+
+//--------------- pause ---------------------------------
+void MonitoringGuiManager::pause() {
+ driver->stopTimer();
+}
+
+//--------------- rewind ---------------------------------
+void MonitoringGuiManager::rewind() {
+ pause();
+ monitoringManager->rewind();
+ lastRefreshTime=0;
+ emit changed();
+ dialog->updateSimulation();
+}
+
+//--------------- reload ---------------------------------
+void MonitoringGuiManager::reload() {
+ pause();
+ monitoringManager->reload(false);
+ lastRefreshTime=0;
+ emit reconnectPml();
+ dialog->updateAll();
+}
+
+
+
+//--------------- loadMmlInFile ---------------------------------
+bool MonitoringGuiManager::loadMmlInFile(QString fileName) {
+ if (monitoringManager) {
+ delete monitoringManager;
+ }
+
+ monitoringManager=MonitoringManagerFactory::createManager(fileName.toStdString().c_str());
+ if (monitoringManager != NULL) {
+ monitoringManager->init();
+ dialog->updateAll();
+ return true;
+ } else
+ return false;
+}
+
+//--------------- saveMmlOutFile ---------------------------------
+bool MonitoringGuiManager::saveMmlOutFile(QString fileName) {
+ monitoringManager->writeOutput(fileName.toUtf8().constData());
+ return true;
+}
+
+//--------------- saveCsvFile ---------------------------------
+bool MonitoringGuiManager::saveCsvFile(QString fileName) {
+ monitoringManager->writeCsv(fileName.toUtf8().constData());
+ return true;
+}
+
+
+//--------------- saveMmlInFile ---------------------------------
+bool MonitoringGuiManager::saveMmlInFile(QString fileName) {
+ monitoringManager->saveMmlIn(fileName.toUtf8().constData());
+ return true;
+}
+
+
+//--------------- updateDt ---------------------------------
+void MonitoringGuiManager::updateDt(double dt) {
+ monitoringManager->setDt(dt);
+}
+
+//--------------- updateRefresh ---------------------------------
+void MonitoringGuiManager::updateRefresh(double refresh) {
+ monitoringManager->setRefresh(refresh);
+}
+
+//--------------- updatePml ---------------------------------
+void MonitoringGuiManager::updatePml(QString fileName) {
+ monitoringManager->setPmlFileName(fileName.toUtf8().constData());
+}
+
+//--------------- updateLml ---------------------------------
+void MonitoringGuiManager::updateLml(QString fileName) {
+ monitoringManager->setLmlFileName(fileName.toUtf8().constData());
+}
+
+
+
+
+
+
+
diff --git a/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.h b/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.h
new file mode 100644
index 0000000..7e95634
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/MonitoringGuiManager.h
@@ -0,0 +1,120 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef MONITORINGGUIMANAGER_H
+#define MONITORINGGUIMANAGER_H
+
+#include "MMLMonitoringGUIAPI.h"
+
+#include <QObject>
+
+// Monitor includes
+#include "MonitoringManagerFactory.h"
+
+class MonitoringDialog;
+class MonitoringDriver;
+/**
+ * @ingroup group_cepmodeling_libraries_mml
+ *
+ * @brief
+ * A GUI to manipulate mml documents
+ *
+ **/
+class /* needed if you monitoringgui is compiled as shared: MML_MONITORING_GUI_API*/ MonitoringGuiManager : public QObject {
+
+ Q_OBJECT
+
+public:
+
+ /// constructor
+ MonitoringGuiManager();
+
+ /// destructor
+ virtual ~MonitoringGuiManager();
+
+ /// get dialog
+ MonitoringDialog* getDialog();
+ /// get driver
+ MonitoringDriver* getDriver();
+ /// get Monitoring Manager
+ MonitoringManager* getMonitoringManager();
+
+ /// Load a MMLIn file
+ bool loadMmlInFile(QString fileName);
+ /// Save MMLout file
+ bool saveMmlOutFile(QString fileName);
+ /// Save MMLIn file
+ bool saveMmlInFile(QString fileName);
+ /// Save csv file
+ bool saveCsvFile(QString fileName);
+
+ ///update dt
+ void updateDt(double dt);
+ ///update refresh
+ void updateRefresh(double refresh);
+ /// update pml
+ void updatePml(QString fileName);
+ /// update lml
+ void updateLml(QString fileName);
+
+ /// pause simulation
+ void pause();
+ /// do simulation lopp
+ void simulate();
+ /// do one step of simulation
+ void simulateOneStep();
+ /// rewind simulation
+ void rewind();
+
+public slots:
+
+ /** do one step of simulation
+ * @return true only if the step was done
+ */
+ bool doOneStep();
+ /// reload simulation with current parameters
+ void reload();
+
+signals:
+ /// emitted when one step of simulation is done, there was changes, so maybe there are some display to update
+ void changed();
+ ///
+ void reconnectPml();
+
+private :
+
+ /// the dialog box
+ MonitoringDialog* dialog;
+ /// the simulation driver
+ MonitoringDriver* driver;
+ /// Monitoring manager
+ MonitoringManager* monitoringManager;
+ /// last refresh time
+ double lastRefreshTime;
+
+
+};
+
+#endif // MONITORINGGUIMANAGER_H
diff --git a/modeling/libraries/mml/applications/gui/player_end.xpm b/modeling/libraries/mml/monitoringgui/player_end.xpm
similarity index 100%
rename from modeling/libraries/mml/applications/gui/player_end.xpm
rename to modeling/libraries/mml/monitoringgui/player_end.xpm
diff --git a/modeling/libraries/mml/applications/gui/player_pause.xpm b/modeling/libraries/mml/monitoringgui/player_pause.xpm
similarity index 100%
rename from modeling/libraries/mml/applications/gui/player_pause.xpm
rename to modeling/libraries/mml/monitoringgui/player_pause.xpm
diff --git a/modeling/libraries/mml/applications/gui/player_play.xpm b/modeling/libraries/mml/monitoringgui/player_play.xpm
similarity index 100%
rename from modeling/libraries/mml/applications/gui/player_play.xpm
rename to modeling/libraries/mml/monitoringgui/player_play.xpm
diff --git a/modeling/libraries/mml/applications/gui/player_rew.xpm b/modeling/libraries/mml/monitoringgui/player_rew.xpm
similarity index 100%
rename from modeling/libraries/mml/applications/gui/player_rew.xpm
rename to modeling/libraries/mml/monitoringgui/player_rew.xpm
diff --git a/modeling/libraries/mml/monitoringgui/resources/translate/translate_en.ts b/modeling/libraries/mml/monitoringgui/resources/translate/translate_en.ts
new file mode 100644
index 0000000..c24ee70
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/resources/translate/translate_en.ts
@@ -0,0 +1,284 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="en_US">
+<context>
+ <name>MonitoringDialog</name>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="26"/>
+ <location filename="../../MonitoringDialog.ui" line="57"/>
+ <source>Simulation</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="65"/>
+ <source>dt:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="72"/>
+ <source>refresh dt:</source>
+ <translation>dt rafraichi:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="82"/>
+ <source>time:</source>
+ <translation>temps:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="89"/>
+ <source>current fps:</source>
+ <translation>fps courante:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="106"/>
+ <source>average fps:</source>
+ <translation>fps moyenne:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="218"/>
+ <source>pml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="232"/>
+ <location filename="../../MonitoringDialog.ui" line="253"/>
+ <location filename="../../MonitoringDialog.ui" line="561"/>
+ <source>Browse</source>
+ <translation>Naviguer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="239"/>
+ <source>lml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="276"/>
+ <source>Monitors</source>
+ <translation>Moniteurs</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="307"/>
+ <location filename="../../MonitoringDialog.ui" line="435"/>
+ <source>Type</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="312"/>
+ <source>Target</source>
+ <translation>Cible</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="317"/>
+ <source>Start At</source>
+ <translation>Démarrer à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="322"/>
+ <source>Stop At</source>
+ <translation>Stopper à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="327"/>
+ <source>Reference</source>
+ <translation>Référence</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="340"/>
+ <location filename="../../MonitoringDialog.ui" line="458"/>
+ <source>Add</source>
+ <translation>Ajouter</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="363"/>
+ <location filename="../../MonitoringDialog.ui" line="481"/>
+ <source>Edit</source>
+ <translation>Editer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="373"/>
+ <location filename="../../MonitoringDialog.ui" line="491"/>
+ <source>Remove</source>
+ <translation>Retirer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="422"/>
+ <source>Stopping Criteria</source>
+ <translation>Critère d'arrêt</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="440"/>
+ <source>Condition</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="445"/>
+ <source>Scope</source>
+ <translation>Etendue</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="547"/>
+ <source>mml in:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="570"/>
+ <source>Save mml in</source>
+ <translation>Sauver mml in</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="579"/>
+ <source>Save mml out</source>
+ <translation>Sauver mml out</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="586"/>
+ <source>Save output as .csv</source>
+ <translation>Sauver sortie comme .csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="604"/>
+ <location filename="../../MonitoringDialog.ui" line="607"/>
+ <source>rewind simulation</source>
+ <translation>rembobiner simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="617"/>
+ <source>Ctrl+R</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="655"/>
+ <location filename="../../MonitoringDialog.ui" line="658"/>
+ <source>play simulation</source>
+ <translation>jouer simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="668"/>
+ <source>P</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="693"/>
+ <location filename="../../MonitoringDialog.ui" line="696"/>
+ <source>play one step</source>
+ <translation>jouer une étape</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="706"/>
+ <source>S</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="728"/>
+ <location filename="../../MonitoringDialog.ui" line="731"/>
+ <source>pause simulation</source>
+ <translation>simulation en pause</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="137"/>
+ <source>Open MMLIn</source>
+ <translation>Ouvrir MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="137"/>
+ <location filename="../../MonitoringDialog.cpp" line="146"/>
+ <location filename="../../MonitoringDialog.cpp" line="162"/>
+ <source>MML files (*.mml)</source>
+ <translation>Fichiers MML (*.mml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="146"/>
+ <source>Save MMLOut</source>
+ <translation>Sauver MMLOut</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="154"/>
+ <source>Save as Csv</source>
+ <translation>Sauver comme Csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="154"/>
+ <source>CSV files (*.csv)</source>
+ <translation>Fichiers CSV (*.csv)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="162"/>
+ <source>Save MMLIn</source>
+ <translation>Sauver MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="171"/>
+ <source>Changing Lml</source>
+ <translation>Changement Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="171"/>
+ <source>Changing lml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de lml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="173"/>
+ <source>Open Lml</source>
+ <translation>Ouvrir Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="173"/>
+ <source>LML files (*.lml)</source>
+ <translation>Fichiers LML (*.lml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="184"/>
+ <source>Changing Pml</source>
+ <translation>Changement Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="184"/>
+ <source>Changing pml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de pml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="186"/>
+ <source>Open Pml</source>
+ <translation>Ouvrir Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="186"/>
+ <source>PML files (*.pml)</source>
+ <translation>Fichiers PML (*.pml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="207"/>
+ <source>Rewind Simulation</source>
+ <translation>Rembobiner la simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="207"/>
+ <source>Rewind simulation?
+ Not saved data will be lost.</source>
+ <translation>Rembobiner la simulation ?
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="321"/>
+ <source>Simulator</source>
+ <translation>Simulateur</translation>
+ </message>
+</context>
+<context>
+ <name>MonitoringGuiManager</name>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>Simulation finished</source>
+ <translation>Simulation Terminée</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>The simulation is finished (Stopping Criterion reached).</source>
+ <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/libraries/mml/monitoringgui/resources/translate/translate_fr.ts b/modeling/libraries/mml/monitoringgui/resources/translate/translate_fr.ts
new file mode 100644
index 0000000..6b7a6eb
--- /dev/null
+++ b/modeling/libraries/mml/monitoringgui/resources/translate/translate_fr.ts
@@ -0,0 +1,284 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="fr_FR">
+<context>
+ <name>MonitoringDialog</name>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="26"/>
+ <location filename="../../MonitoringDialog.ui" line="57"/>
+ <source>Simulation</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="65"/>
+ <source>dt:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="72"/>
+ <source>refresh dt:</source>
+ <translation>dt rafraichi:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="82"/>
+ <source>time:</source>
+ <translation>temps:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="89"/>
+ <source>current fps:</source>
+ <translation>fps courante:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="106"/>
+ <source>average fps:</source>
+ <translation>fps moyenne:</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="218"/>
+ <source>pml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="232"/>
+ <location filename="../../MonitoringDialog.ui" line="253"/>
+ <location filename="../../MonitoringDialog.ui" line="561"/>
+ <source>Browse</source>
+ <translation>Naviguer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="239"/>
+ <source>lml:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="276"/>
+ <source>Monitors</source>
+ <translation>Moniteurs</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="307"/>
+ <location filename="../../MonitoringDialog.ui" line="435"/>
+ <source>Type</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="312"/>
+ <source>Target</source>
+ <translation>Cible</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="317"/>
+ <source>Start At</source>
+ <translation>Démarrer à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="322"/>
+ <source>Stop At</source>
+ <translation>Stopper à</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="327"/>
+ <source>Reference</source>
+ <translation>Référence</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="340"/>
+ <location filename="../../MonitoringDialog.ui" line="458"/>
+ <source>Add</source>
+ <translation>Ajouter</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="363"/>
+ <location filename="../../MonitoringDialog.ui" line="481"/>
+ <source>Edit</source>
+ <translation>Editer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="373"/>
+ <location filename="../../MonitoringDialog.ui" line="491"/>
+ <source>Remove</source>
+ <translation>Retirer</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="422"/>
+ <source>Stopping Criteria</source>
+ <translation>Critère d'arrêt</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="440"/>
+ <source>Condition</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="445"/>
+ <source>Scope</source>
+ <translation>Etendue</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="547"/>
+ <source>mml in:</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="570"/>
+ <source>Save mml in</source>
+ <translation>Sauver mml in</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="579"/>
+ <source>Save mml out</source>
+ <translation>Sauver mml out</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="586"/>
+ <source>Save output as .csv</source>
+ <translation>Sauver sortie comme .csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="604"/>
+ <location filename="../../MonitoringDialog.ui" line="607"/>
+ <source>rewind simulation</source>
+ <translation>rembobiner simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="617"/>
+ <source>Ctrl+R</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="655"/>
+ <location filename="../../MonitoringDialog.ui" line="658"/>
+ <source>play simulation</source>
+ <translation>jouer simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="668"/>
+ <source>P</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="693"/>
+ <location filename="../../MonitoringDialog.ui" line="696"/>
+ <source>play one step</source>
+ <translation>jouer une étape</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="706"/>
+ <source>S</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.ui" line="728"/>
+ <location filename="../../MonitoringDialog.ui" line="731"/>
+ <source>pause simulation</source>
+ <translation>simulation en pause</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="137"/>
+ <source>Open MMLIn</source>
+ <translation>Ouvrir MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="137"/>
+ <location filename="../../MonitoringDialog.cpp" line="146"/>
+ <location filename="../../MonitoringDialog.cpp" line="162"/>
+ <source>MML files (*.mml)</source>
+ <translation>Fichiers MML (*.mml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="146"/>
+ <source>Save MMLOut</source>
+ <translation>Sauver MMLOut</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="154"/>
+ <source>Save as Csv</source>
+ <translation>Sauver comme Csv</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="154"/>
+ <source>CSV files (*.csv)</source>
+ <translation>Fichiers CSV (*.csv)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="162"/>
+ <source>Save MMLIn</source>
+ <translation>Sauver MMLIn</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="171"/>
+ <source>Changing Lml</source>
+ <translation>Changement Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="171"/>
+ <source>Changing lml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de lml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="173"/>
+ <source>Open Lml</source>
+ <translation>Ouvrir Lml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="173"/>
+ <source>LML files (*.lml)</source>
+ <translation>Fichiers LML (*.lml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="184"/>
+ <source>Changing Pml</source>
+ <translation>Changement Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="184"/>
+ <source>Changing pml will reload simulation.
+ Not saved data will be lost.</source>
+ <translation>Le changement de pml rechargera la simulation.
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="186"/>
+ <source>Open Pml</source>
+ <translation>Ouvrir Pml</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="186"/>
+ <source>PML files (*.pml)</source>
+ <translation>Fichiers PML (*.pml)</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="207"/>
+ <source>Rewind Simulation</source>
+ <translation>Rembobiner la simulation</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="207"/>
+ <source>Rewind simulation?
+ Not saved data will be lost.</source>
+ <translation>Rembobiner la simulation ?
+Les données non sauvées seront perdues.</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringDialog.cpp" line="321"/>
+ <source>Simulator</source>
+ <translation>Simulateur</translation>
+ </message>
+</context>
+<context>
+ <name>MonitoringGuiManager</name>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>Simulation finished</source>
+ <translation>Simulation Terminée</translation>
+ </message>
+ <message>
+ <location filename="../../MonitoringGuiManager.cpp" line="81"/>
+ <source>The simulation is finished (Stopping Criterion reached).</source>
+ <translation>La simulation est terminée (Critère d'arrêt atteint).</translation>
+ </message>
+</context>
+</TS>
diff --git a/modeling/libraries/mml/schema/CMakeLists.txt b/modeling/libraries/mml/schema/CMakeLists.txt
deleted file mode 100644
index f0823b8..0000000
--- a/modeling/libraries/mml/schema/CMakeLists.txt
+++ /dev/null
@@ -1,45 +0,0 @@
-project(mml)
-
-# XSD really needed
-find_package(XSD REQUIRED)
-
-set(monitorLib_XSD
- ${CMAKE_CURRENT_SOURCE_DIR}/MonitoringModel.xsd
- ${CMAKE_CURRENT_SOURCE_DIR}/MonitorIn.xsd
- ${CMAKE_CURRENT_SOURCE_DIR}/MonitorOut.xsd
-)
-
-option(MML_GENERATE_XSD_LIB "Generates mml from XML Schema (XSD code synthesis needed)" ON)
-
-if(MML_GENERATE_XSD_LIB)
- if (XSD_COMMAND)
- set(XSD_COMMAND xsdcxx CACHE STRING "name of the XSD code synthesis compiler")
- # generates headers from scratch
- foreach(xsdFile ${monitorLib_XSD})
- get_filename_component(xsdFileName ${xsdFile} NAME_WE)
- message(STATUS "Generating code from ${xsdFileName}")
- add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
- COMMAND ${XSD_COMMAND}
- ARGS cxx-tree --generate-polymorphic --generate-serialization --namespace-map =mml --polymorphic-type Method --polymorphic-type Criteria ${xsdFile}
- DEPENDS ${xsdFile})
- set(monitoringLib_H ${monitoringLib_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
- set(monitoringLib_SRCS ${monitoringLib_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
- endforeach()
- else()
- message(FATAL_ERROR "Cannot find xsdcxx command: cannot generate mml from scratch, try with MML_GENERATE_XSD_LIB set to OFF")
- set(MML_GENERATE_XSD_LIB OFF)
- endif()
-else()
- message(FATAL_ERROR "MML_GENERATE_XSD_LIB cannot be set to OFF, it is mandatory for any use of MML")
-endif()
-
-# add lib as a camitk tool
-# force to mml (default should be schema as it is in the schema dir, but schema is too generic!)
-camitk_library(STATIC
- LIBNAME mml
- SOURCES ${monitoringLib_SRCS}
- NEEDS_XSD
- HEADERS_TO_INSTALL ${monitoringLib_H}
- CEP_NAME CEP_MODELING
- DESCRIPTION "Tools to describes a biomechanical model."
-)
\ No newline at end of file
diff --git a/modeling/libraries/mml/schema/MonitorIn.xsd b/modeling/libraries/mml/schema/MonitorIn.xsd
deleted file mode 100644
index dccb64d..0000000
--- a/modeling/libraries/mml/schema/MonitorIn.xsd
+++ /dev/null
@@ -1,48 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
-/*****************************************************************************
-$CAMITK_LICENCE_BEGIN$
-
-CamiTK - Computer Assisted Medical Intervention ToolKit
-Visit http://camitk.imag.fr for more information
-Copyright (C) 2011 Celine Fouard, Emmanuel Promayon, Yannick Keraval
-
-This library is free software; you can redistribute it and/or
-modify it under the terms of the GNU Lesser General Public
-License as published by the Free Software Foundation; either
-version 2.1 of the License, or (at your option) any later version.
-
-This library is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-Lesser General Public License for more details.
-
-You should have received a copy of the GNU Lesser General Public
-License along with this library; if not, write to the Free Software
-Foundation, Inc., 51 Franklin Street, Fifth Floor,
-Boston, MA 02110-1301 USA
-
-$CAMITK_LICENCE_END$
-*****************************************************************************/
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-
- <xsd:include schemaLocation="MonitoringModel.xsd"/>
-
- <xsd:element name="monitoringIn" type="MonitoringIn">
-
- <xsd:key name="UniqueMonitorIndex">
- <xsd:annotation>
- <xsd:documentation>
- Define a unique key for monitor index
- </xsd:documentation>
- </xsd:annotation>
- <xsd:selector xpath=".//monitors/monitor"/>
- <xsd:field xpath="@index"/>
- </xsd:key>
-
- </xsd:element>
-
-</xsd:schema>
diff --git a/modeling/libraries/mml/schema/MonitorOut.xsd b/modeling/libraries/mml/schema/MonitorOut.xsd
deleted file mode 100644
index 3a6e5c2..0000000
--- a/modeling/libraries/mml/schema/MonitorOut.xsd
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
-/*****************************************************************************
-$CAMITK_LICENCE_BEGIN$
-
-CamiTK - Computer Assisted Medical Intervention ToolKit
-Visit http://camitk.imag.fr for more information
-Copyright (C) 2011 Celine Fouard, Emmanuel Promayon, Yannick Keraval
-
-This library is free software; you can redistribute it and/or
-modify it under the terms of the GNU Lesser General Public
-License as published by the Free Software Foundation; either
-version 2.1 of the License, or (at your option) any later version.
-
-This library is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-Lesser General Public License for more details.
-
-You should have received a copy of the GNU Lesser General Public
-License along with this library; if not, write to the Free Software
-Foundation, Inc., 51 Franklin Street, Fifth Floor,
-Boston, MA 02110-1301 USA
-
-$CAMITK_LICENCE_END$
-*****************************************************************************/
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-
- <xsd:include schemaLocation="MonitoringModel.xsd"/>
-
- <xsd:element name="monitoringOut" type="MonitoringOut">
-
- </xsd:element>
-
-</xsd:schema>
diff --git a/modeling/libraries/mml/schema/MonitoringModel.xsd b/modeling/libraries/mml/schema/MonitoringModel.xsd
deleted file mode 100644
index 3e954c4..0000000
--- a/modeling/libraries/mml/schema/MonitoringModel.xsd
+++ /dev/null
@@ -1,267 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
-/*****************************************************************************
-$CAMITK_LICENCE_BEGIN$
-
-CamiTK - Computer Assisted Medical Intervention ToolKit
-Visit http://camitk.imag.fr for more information
-Copyright (C) 2011 Celine Fouard, Emmanuel Promayon, Yannick Keraval
-
-This library is free software; you can redistribute it and/or
-modify it under the terms of the GNU Lesser General Public
-License as published by the Free Software Foundation; either
-version 2.1 of the License, or (at your option) any later version.
-
-This library is distributed in the hope that it will be useful,
-but WITHOUT ANY WARRANTY; without even the implied warranty of
-MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
-Lesser General Public License for more details.
-
-You should have received a copy of the GNU Lesser General Public
-License along with this library; if not, write to the Free Software
-Foundation, Inc., 51 Franklin Street, Fifth Floor,
-Boston, MA 02110-1301 USA
-
-$CAMITK_LICENCE_END$
-*****************************************************************************/
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-
- <!--########################## Monitoring In ##########################-->
-
- <xsd:complexType name="MonitoringIn">
- <xsd:annotation>
- <xsd:documentation>
- monitoring model is a generic representation for monitors, simulation parameters and stopping criteria
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="dt" type="TimeParameter" minOccurs="1" maxOccurs="1"/>
- <xsd:element name="refresh" type="TimeParameter" minOccurs="1" maxOccurs="1"/>
- <xsd:choice>
- <xsd:element name="pmlFile" type="xsd:string" maxOccurs="1"/>
- <xsd:element name="simulatorFile" type="xsd:string" maxOccurs="1"/>
- </xsd:choice>
- <xsd:element name="lmlFile" type="xsd:string" minOccurs="0" maxOccurs="1"/>
- <xsd:element name="simulator" type="xsd:string" minOccurs="1" maxOccurs="1"/>
- <xsd:element name="stoppingCriteria" type="StoppingCriteria" minOccurs="0" maxOccurs="1"/>
- <xsd:element name="monitors" type="Monitors" minOccurs="0" maxOccurs="1"/>
-
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="TimeParameter">
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="value" type="xsd:double" use="required"/>
- <xsd:attribute name="unit" type="TimeUnit" use="required"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="TimeUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="ms"/>
- <xsd:enumeration value="s"/>
- <xsd:enumeration value="min"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <!--####### Stopping criteria #######-->
-
- <xsd:complexType name="StoppingCriteria">
- <xsd:choice>
- <xsd:element name="criteria" type="Criteria"/>
- <xsd:element name="multipleCriteria" type="MultipleCriteria"/>
- </xsd:choice>
- </xsd:complexType>
-
- <!--####### Criteria #######-->
-
- <xsd:complexType name="Criteria" abstract="true">
- <xsd:sequence>
- <xsd:element name="method" type="Method"/>
- <xsd:element name="data" type="xsd:string" minOccurs="0"/> <!-- only if used for outpout -->
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="KineticEnergy">
- <xsd:complexContent>
- <xsd:extension base="Criteria">
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Speed">
- <xsd:complexContent>
- <xsd:extension base="Criteria">
- <xsd:attribute name="unit" type="SpeedUnit" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="SpeedUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="m/s"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="Position">
- <xsd:complexContent>
- <xsd:extension base="Criteria">
- <xsd:attribute name="unit" type="PositionUnit" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="PositionUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="nm"/>
- <xsd:enumeration value="mm"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="Time">
- <xsd:complexContent>
- <xsd:extension base="Criteria">
- <xsd:attribute name="unit" type="TimeUnit" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Force">
- <xsd:complexContent>
- <xsd:extension base="Criteria">
- <xsd:attribute name="unit" type="ForceUnit" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="ForceUnit">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="mN"/>
- <xsd:enumeration value="N"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="Method" abstract="true">
- <xsd:attribute name="scope" type="Scope"/> <!-- default value?... -->
- </xsd:complexType>
-
- <xsd:complexType name="Threshold">
- <xsd:complexContent>
- <xsd:extension base="Method">
- <xsd:attribute name="maxValue" type="xsd:double" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="MinThreshold">
- <xsd:complexContent>
- <xsd:extension base="Method">
- <xsd:attribute name="minValue" type="xsd:double" use="required"/>
- </xsd:extension>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="Scope">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="Any"/>
- <xsd:enumeration value="Average"/>
- <xsd:enumeration value="Sum"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <!--####### Multiple Criteria #######-->
-
- <xsd:complexType name="MultipleCriteria">
- <xsd:choice minOccurs="2" maxOccurs="unbounded">
- <xsd:element name="multipleCriteria" type="MultipleCriteria"/>
- <xsd:element name="criteria" type="Criteria"/>
- </xsd:choice>
- <xsd:attribute name="op" type="LogicalOp" use="required"/>
- </xsd:complexType>
-
- <xsd:simpleType name="LogicalOp">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="And"/>
- <xsd:enumeration value="Or"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <!--####### Monitors #######-->
-
- <xsd:complexType name="Monitors">
- <xsd:sequence>
- <xsd:element name="monitor" type="Monitor" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="Reference">
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="document" type="xsd:string" use="required"/>
- <xsd:attribute name="monitorIndex" type="xsd:nonNegativeInteger"/>
- <xsd:attribute name="target" type="xsd:string"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:complexType name="Monitor">
- <xsd:sequence>
- <xsd:element name="startAt" type="TimeParameter"/>
- <xsd:element name="stopAt" type="TimeParameter"/>
- <xsd:element name="reference" type="Reference" minOccurs="0" maxOccurs="2" />
- <xsd:element name="indexes" type="xsd:string" minOccurs="0"/> <!-- only if used for output -->
- <xsd:element name="data" type="xsd:string" minOccurs="0"/> <!-- only if used for output -->
-
- </xsd:sequence>
- <xsd:attribute name="type" type="MonitorType" use="required"/>
- <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
- <xsd:attribute name="target" type="xsd:string" use="required"/>
- <xsd:attribute name="dx" type="xsd:double"/>
- <xsd:attribute name="dy" type="xsd:double"/>
- <xsd:attribute name="dz" type="xsd:double"/>
- </xsd:complexType>
-
- <xsd:simpleType name="MonitorType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="Position"/>
- <xsd:enumeration value="REN"/>
- <xsd:enumeration value="GeomDeviation"/>
- <xsd:enumeration value="Force"/>
- <xsd:enumeration value="PointSetDistance"/>
- <xsd:enumeration value="PointFinalSetDistance"/>
- <xsd:enumeration value="Volume"/>
- <xsd:enumeration value="Surface"/>
- <xsd:enumeration value="Displacement"/>
- <xsd:enumeration value="NormDisplacement"/>
- <xsd:enumeration value="DistanceToTriangularMeshFinal"/>
- <xsd:enumeration value="ComputingTime"/>
- <xsd:enumeration value="DistanceX"/>
- <xsd:enumeration value="DistanceY"/>
- <xsd:enumeration value="DistanceZ"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <!--########################## Monitoring Out ##########################-->
-
- <xsd:complexType name="MonitoringOut">
- <xsd:sequence>
- <xsd:element name="pmlFile" type="xsd:string" minOccurs="1" maxOccurs="1"/>
- <xsd:element name="time" type="TimeStep" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="TimeStep">
- <xsd:sequence>
- <xsd:element name="stoppingCriteria" type="StoppingCriteria" minOccurs="0" maxOccurs="1"/>
- <xsd:element name="monitor" type="Monitor" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
- <xsd:attribute name="value" type="xsd:double" use="required"/>
- <xsd:attribute name="unit" type="TimeUnit" use="required"/>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/modeling/libraries/mml/test/check.sh b/modeling/libraries/mml/test/check.sh
index decd7c3..2cd53d3 100755
--- a/modeling/libraries/mml/test/check.sh
+++ b/modeling/libraries/mml/test/check.sh
@@ -4,7 +4,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/mmlschema/CMakeLists.txt b/modeling/libraries/mmlschema/CMakeLists.txt
new file mode 100644
index 0000000..6ed429d
--- /dev/null
+++ b/modeling/libraries/mmlschema/CMakeLists.txt
@@ -0,0 +1,36 @@
+# XSD really needed
+find_package(XSD REQUIRED)
+
+set(monitorLib_XSD
+ ${CMAKE_CURRENT_SOURCE_DIR}/MonitoringModel.xsd
+ ${CMAKE_CURRENT_SOURCE_DIR}/MonitorIn.xsd
+ ${CMAKE_CURRENT_SOURCE_DIR}/MonitorOut.xsd
+)
+
+if (XSD_COMMAND)
+ set(XSD_COMMAND xsdcxx CACHE STRING "name of the XSD code synthesis compiler")
+ # generates headers from scratch
+ foreach(xsdFile ${monitorLib_XSD})
+ get_filename_component(xsdFileName ${xsdFile} NAME_WE)
+ message(STATUS "Generating code from ${xsdFileName}")
+ add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
+ COMMAND ${XSD_COMMAND}
+ ARGS cxx-tree --generate-polymorphic --generate-serialization --namespace-map =mml --polymorphic-type Method --polymorphic-type Criteria ${xsdFile}
+ DEPENDS ${xsdFile})
+ set(monitoringLib_H ${monitoringLib_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
+ set(monitoringLib_SRCS ${monitoringLib_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
+ endforeach()
+else()
+ message(FATAL_ERROR "Cannot find xsd or xsdcxx command: please install XSD / check xsd or xsdcxx binary is in your sytem PATH")
+endif()
+
+
+# add lib as a camitk tool
+# force to mmlschema (default should be schema as it is in the schema dir, but schema is too generic!)
+camitk_library(STATIC
+ SOURCES ${monitoringLib_SRCS}
+ NEEDS_XSD
+ HEADERS_TO_INSTALL ${monitoringLib_H}
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "Data description of MML: Monitoring biomechanical simulation Markup Language"
+)
\ No newline at end of file
diff --git a/modeling/libraries/mmlschema/MonitorIn.xsd b/modeling/libraries/mmlschema/MonitorIn.xsd
new file mode 100644
index 0000000..3115267
--- /dev/null
+++ b/modeling/libraries/mmlschema/MonitorIn.xsd
@@ -0,0 +1,46 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="MonitoringModel.xsd"/>
+
+ <xsd:element name="monitoringIn" type="MonitoringIn">
+
+ <xsd:key name="UniqueMonitorIndex">
+ <xsd:annotation>
+ <xsd:documentation>
+ Define a unique key for monitor index
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:selector xpath=".//monitors/monitor"/>
+ <xsd:field xpath="@index"/>
+ </xsd:key>
+
+ </xsd:element>
+
+</xsd:schema>
diff --git a/modeling/libraries/mmlschema/MonitorOut.xsd b/modeling/libraries/mmlschema/MonitorOut.xsd
new file mode 100644
index 0000000..c03e916
--- /dev/null
+++ b/modeling/libraries/mmlschema/MonitorOut.xsd
@@ -0,0 +1,36 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="MonitoringModel.xsd"/>
+
+ <xsd:element name="monitoringOut" type="MonitoringOut">
+
+ </xsd:element>
+
+</xsd:schema>
diff --git a/modeling/libraries/mmlschema/MonitoringModel.xsd b/modeling/libraries/mmlschema/MonitoringModel.xsd
new file mode 100644
index 0000000..28acab1
--- /dev/null
+++ b/modeling/libraries/mmlschema/MonitoringModel.xsd
@@ -0,0 +1,275 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+-->
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <!--########################## Monitoring In ##########################-->
+
+ <xsd:complexType name="MonitoringIn">
+ <xsd:annotation>
+ <xsd:documentation>
+ monitoring model is a generic representation for monitors, simulation parameters and stopping criteria
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="dt" type="TimeParameter" minOccurs="1" maxOccurs="1"/>
+ <xsd:element name="refresh" type="TimeParameter" minOccurs="1" maxOccurs="1"/>
+ <xsd:choice>
+ <xsd:element name="pmlFile" type="xsd:string" maxOccurs="1"/>
+ <xsd:element name="simulatorFile" type="xsd:string" maxOccurs="1"/>
+ </xsd:choice>
+ <xsd:element name="lmlFile" type="xsd:string" minOccurs="0" maxOccurs="1"/>
+ <xsd:element name="simulator" type="xsd:string" minOccurs="1" maxOccurs="1"/>
+ <xsd:element name="stoppingCriteria" type="StoppingCriteria" minOccurs="0" maxOccurs="1"/>
+ <xsd:element name="monitors" type="Monitors" minOccurs="0" maxOccurs="1"/>
+
+ </xsd:sequence>
+ </xsd:complexType>
+
+ <xsd:complexType name="TimeParameter">
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="value" type="xsd:double" use="required"/>
+ <xsd:attribute name="unit" type="TimeUnit" use="required"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:simpleType name="TimeUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="ms"/>
+ <xsd:enumeration value="s"/>
+ <xsd:enumeration value="min"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <!--####### Stopping criteria #######-->
+
+ <xsd:complexType name="StoppingCriteria">
+ <xsd:choice>
+ <xsd:element name="criteria" type="Criteria"/>
+ <xsd:element name="multipleCriteria" type="MultipleCriteria"/>
+ </xsd:choice>
+ </xsd:complexType>
+
+ <!--####### Criteria #######-->
+
+ <xsd:complexType name="Criteria" abstract="true">
+ <xsd:sequence>
+ <xsd:element name="method" type="Method"/>
+ <xsd:element name="data" type="xsd:string" minOccurs="0"/> <!-- only if used for outpout -->
+ </xsd:sequence>
+ </xsd:complexType>
+
+ <xsd:complexType name="KineticEnergy">
+ <xsd:complexContent>
+ <xsd:extension base="Criteria">
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:complexType name="Speed">
+ <xsd:complexContent>
+ <xsd:extension base="Criteria">
+ <xsd:attribute name="unit" type="SpeedUnit" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:simpleType name="SpeedUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="m/s"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:complexType name="Position">
+ <xsd:complexContent>
+ <xsd:extension base="Criteria">
+ <xsd:attribute name="unit" type="PositionUnit" use="required"/>
+ <xsd:attribute name="target" type="xsd:string" use="optional"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:simpleType name="PositionUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="nm"/>
+ <xsd:enumeration value="mm"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:complexType name="Time">
+ <xsd:complexContent>
+ <xsd:extension base="Criteria">
+ <xsd:attribute name="unit" type="TimeUnit" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:complexType name="Force">
+ <xsd:complexContent>
+ <xsd:extension base="Criteria">
+ <xsd:attribute name="unit" type="ForceUnit" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:simpleType name="ForceUnit">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="mN"/>
+ <xsd:enumeration value="N"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <xsd:complexType name="Method" abstract="true">
+ <xsd:attribute name="scope" type="Scope"/> <!-- default value?... -->
+ </xsd:complexType>
+
+ <xsd:complexType name="Threshold">
+ <xsd:complexContent>
+ <xsd:extension base="Method">
+ <xsd:attribute name="maxValue" type="xsd:double" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:complexType name="TimePeriodThreshold">
+ <xsd:complexContent>
+ <xsd:extension base="Method">
+ <xsd:attribute name="minValue" type="xsd:double" use="required"/>
+ <xsd:attribute name="iterations" type="xsd:int" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:complexType name="MinThreshold">
+ <xsd:complexContent>
+ <xsd:extension base="Method">
+ <xsd:attribute name="minValue" type="xsd:double" use="required"/>
+ </xsd:extension>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:simpleType name="Scope">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="Any"/>
+ <xsd:enumeration value="Average"/>
+ <xsd:enumeration value="Sum"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <!--####### Multiple Criteria #######-->
+
+ <xsd:complexType name="MultipleCriteria">
+ <xsd:choice minOccurs="2" maxOccurs="unbounded">
+ <xsd:element name="multipleCriteria" type="MultipleCriteria"/>
+ <xsd:element name="criteria" type="Criteria"/>
+ </xsd:choice>
+ <xsd:attribute name="op" type="LogicalOp" use="required"/>
+ </xsd:complexType>
+
+ <xsd:simpleType name="LogicalOp">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="And"/>
+ <xsd:enumeration value="Or"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <!--####### Monitors #######-->
+
+ <xsd:complexType name="Monitors">
+ <xsd:sequence>
+ <xsd:element name="monitor" type="Monitor" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+ <xsd:complexType name="Reference">
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="document" type="xsd:string" use="required"/>
+ <xsd:attribute name="monitorIndex" type="xsd:nonNegativeInteger"/>
+ <xsd:attribute name="target" type="xsd:string"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+ <xsd:complexType name="Monitor">
+ <xsd:sequence>
+ <xsd:element name="startAt" type="TimeParameter"/>
+ <xsd:element name="stopAt" type="TimeParameter"/>
+ <xsd:element name="reference" type="Reference" minOccurs="0" maxOccurs="2" />
+ <xsd:element name="indexes" type="xsd:string" minOccurs="0"/> <!-- only if used for output -->
+ <xsd:element name="data" type="xsd:string" minOccurs="0"/> <!-- only if used for output -->
+
+ </xsd:sequence>
+ <xsd:attribute name="type" type="MonitorType" use="required"/>
+ <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
+ <xsd:attribute name="target" type="xsd:string" use="required"/>
+ <xsd:attribute name="dx" type="xsd:double"/>
+ <xsd:attribute name="dy" type="xsd:double"/>
+ <xsd:attribute name="dz" type="xsd:double"/>
+ </xsd:complexType>
+
+ <xsd:simpleType name="MonitorType">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="Position"/>
+ <xsd:enumeration value="REN"/>
+ <xsd:enumeration value="GeomDeviation"/>
+ <xsd:enumeration value="Force"/>
+ <xsd:enumeration value="PointSetDistance"/>
+ <xsd:enumeration value="PointFinalSetDistance"/>
+ <xsd:enumeration value="Volume"/>
+ <xsd:enumeration value="Surface"/>
+ <xsd:enumeration value="Displacement"/>
+ <xsd:enumeration value="NormDisplacement"/>
+ <xsd:enumeration value="DistanceToTriangularMeshFinal"/>
+ <xsd:enumeration value="ComputingTime"/>
+ <xsd:enumeration value="DistanceX"/>
+ <xsd:enumeration value="DistanceY"/>
+ <xsd:enumeration value="DistanceZ"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+ <!--########################## Monitoring Out ##########################-->
+
+ <xsd:complexType name="MonitoringOut">
+ <xsd:sequence>
+ <xsd:element name="pmlFile" type="xsd:string" minOccurs="1" maxOccurs="1"/>
+ <xsd:element name="time" type="TimeStep" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+ <xsd:complexType name="TimeStep">
+ <xsd:sequence>
+ <xsd:element name="stoppingCriteria" type="StoppingCriteria" minOccurs="0" maxOccurs="1"/>
+ <xsd:element name="monitor" type="Monitor" minOccurs="0" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ <xsd:attribute name="value" type="xsd:double" use="required"/>
+ <xsd:attribute name="unit" type="TimeUnit" use="required"/>
+ </xsd:complexType>
+
+</xsd:schema>
diff --git a/modeling/libraries/mml/schema/resources/translate/translate_en.ts b/modeling/libraries/mmlschema/resources/translate/translate_en.ts
similarity index 100%
rename from modeling/libraries/mml/schema/resources/translate/translate_en.ts
rename to modeling/libraries/mmlschema/resources/translate/translate_en.ts
diff --git a/modeling/libraries/mml/schema/resources/translate/translate_fr.ts b/modeling/libraries/mmlschema/resources/translate/translate_fr.ts
similarity index 100%
rename from modeling/libraries/mml/schema/resources/translate/translate_fr.ts
rename to modeling/libraries/mmlschema/resources/translate/translate_fr.ts
diff --git a/modeling/libraries/pml/Atom.cpp b/modeling/libraries/pml/Atom.cpp
index 326358f..5082f55 100644
--- a/modeling/libraries/pml/Atom.cpp
+++ b/modeling/libraries/pml/Atom.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,16 +27,16 @@
#include "StructuralComponent.h"
#include "PhysicalModel.h"
+// pmlschema includes
+#include <Atom.hxx>
+
//----------------------- Constructors -----------------------
Atom::Atom(PhysicalModel *p) {
properties = new AtomProperties(p);
}
-Atom::Atom ( PhysicalModel * p, xmlNodePtr node, unsigned int id) {
- for ( xmlNodePtr child = node->xmlChildrenNode; child != NULL; child = child->next )
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "atomProperties" ) )
- properties = new AtomProperties ( p, child );
-
+Atom::Atom ( PhysicalModel * p, physicalModel::Atom node, unsigned int id) {
+ properties = new AtomProperties(p, node.atomProperties());
indexInAtoms = id;
}
@@ -86,7 +86,7 @@ void Atom::xmlPrint ( std::ostream &o, const StructuralComponent *sc ) {
o << "</atom>" << std::endl;
} else {
// - if it is any other structural component: the atom print its ref
- o << "<atomRef index=\"" << getIndex() << "\" />" << std::endl;
+ o << "<atomRef index=\"" << getIndex() << "\"/>" << std::endl;
}
}
diff --git a/modeling/libraries/pml/Atom.h b/modeling/libraries/pml/Atom.h
index 1cd6b9a..3c5a90e 100644
--- a/modeling/libraries/pml/Atom.h
+++ b/modeling/libraries/pml/Atom.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,10 +28,15 @@
#include <string>
-
#include "Structure.h"
#include "AtomProperties.h"
#include "RenderingMode.h"
+
+//pmlschema forward declarations
+namespace physicalModel {
+class Atom;
+}
+
/**
* @ingroup group_cepmodeling_libraries_pml
*
@@ -50,11 +55,11 @@ public:
/** constructor from xml node: try to read and get the parameters from xml and set the index in atom SC (if possible)
* @param myPM the physical model the atom belongs to
- * @param n the xml node to read to get the information
+ * @param atom the xsd class representing the atom to read information from.
* @param id the index in the atoms structural component (useful to directly access the memory block corresponding to the position)
* @see getIndexInAtoms()
*/
- Atom(PhysicalModel *myPM, xmlNodePtr n, unsigned int id = -1);
+ Atom(PhysicalModel *myPM, physicalModel::Atom atom, unsigned int id = -1);
/** constructor : generate a unique index
* @param myPM the physical model the atom belongs to
@@ -78,7 +83,7 @@ public:
/// std destructor
~Atom();
- /** print to an output stream in "pseaudo" XML format.
+ /** print to an output stream in "pseudo" XML format.
*/
void xmlPrint(std::ostream &, const StructuralComponent *);
diff --git a/modeling/libraries/pml/AtomProperties.cpp b/modeling/libraries/pml/AtomProperties.cpp
new file mode 100644
index 0000000..6665d2b
--- /dev/null
+++ b/modeling/libraries/pml/AtomProperties.cpp
@@ -0,0 +1,146 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include "AtomProperties.h"
+
+// XSD / XercesC stuffs
+#include <xercesc/util/XercesDefs.hpp>
+#include <xercesc/dom/DOMAttr.hpp>
+#include <xercesc/util/XMLString.hpp>
+
+// pmlschema includes
+#include <AtomProperties.hxx>
+
+//----------------------- Class member init -----------------------
+void AtomProperties::resetUniqueIndex() {
+ AtomProperties::maxUniqueIndex = 0;
+}
+
+// initializing the static class member
+unsigned int AtomProperties::maxUniqueIndex = 0;
+
+//----------------------- Constructors -----------------------
+AtomProperties::AtomProperties(PhysicalModel * p) : StructureProperties(p, StructureProperties::ATOM) {
+ allocate();
+ setPosition(0.0, 0.0, 0.0);
+ index = maxUniqueIndex++;
+}
+
+AtomProperties::AtomProperties(PhysicalModel * p, physicalModel::AtomProperties xmlAtomProp) : StructureProperties(p, StructureProperties::ATOM) {
+ allocate();
+
+ // Begin the search by required atom's properties, such as index and its position (x,y,z)
+ setIndex(xmlAtomProp.index());
+ setPosition(xmlAtomProp.x(), xmlAtomProp.y(), xmlAtomProp.z());
+
+ // Search for any optional name given to the atom
+ if (xmlAtomProp.name().present()) {
+ setName(xmlAtomProp.name().get());
+ }
+
+ // Add the eventually unkown attributes
+ xmlToFields(xmlAtomProp.any_attribute());
+}
+
+AtomProperties::AtomProperties(PhysicalModel * p, const double pos[3]) : StructureProperties(p, StructureProperties::ATOM) {
+ allocate();
+ setPosition(pos);
+ index = maxUniqueIndex++;
+}
+
+AtomProperties::AtomProperties(PhysicalModel * p, const unsigned int ind) : StructureProperties(p, StructureProperties::ATOM) {
+ allocate();
+ setPosition(0.0, 0.0, 0.0);
+ index = ind;
+
+ if (ind >= maxUniqueIndex) {
+ maxUniqueIndex = ind + 1;
+ }
+}
+
+AtomProperties::AtomProperties(PhysicalModel * p, const unsigned int ind, const double pos[3]) : StructureProperties(p, StructureProperties::ATOM) {
+ allocate();
+ setPosition(pos);
+ index = ind;
+
+ if (ind >= maxUniqueIndex) {
+ maxUniqueIndex = ind + 1;
+ }
+}
+
+//----------------------- destructor -----------------------
+AtomProperties::~AtomProperties() {
+ if (allocated) {
+ delete [] X;
+ }
+}
+
+//----------------------- allocate -----------------------
+void AtomProperties::allocate() {
+ X = new double[3];
+ allocated = true;
+}
+
+//----------------------- setPositionPointer -----------------------
+void AtomProperties::setPositionPointer(double * ptr, bool update) {
+ // store previous position if needed
+ double pos[3];
+
+ if (update) {
+ getPosition(pos);
+ }
+
+ // delete previous memory to avoid memory leaks, if needed
+ if (allocated) {
+ delete [] X;
+ allocated = false;
+ }
+
+ X = ptr;
+
+ // restore if needed
+ if (update) {
+ setPosition(pos);
+ }
+}
+
+// --------------- xmlPrint ---------------
+void AtomProperties::xmlPrint(std::ostream & o) {
+
+ // beginning of the atom properties
+ o << "<atomProperties index=\"" << index << "\"";
+ o << " x=\"" << X[0] << "\" y=\"" << X[1] << "\" z=\"" << X[2] << "\"";
+
+ if (getName() != "") {
+ o << " name=\"" << getName().c_str() << "\"";
+ }
+
+ for (std::map<std::string, std::string>::iterator it = fields.begin(); it != fields.end() ; it++) {
+ o << " " << (*it).first << "=\"" << (*it).second << "\"";
+ }
+
+ // end of the properties
+ o << "/>" << std::endl;
+
+}
diff --git a/modeling/libraries/pml/AtomProperties.h b/modeling/libraries/pml/AtomProperties.h
new file mode 100644
index 0000000..4e7dd80
--- /dev/null
+++ b/modeling/libraries/pml/AtomProperties.h
@@ -0,0 +1,143 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef ATOMPROPERTIES_H
+#define ATOMPROPERTIES_H
+
+//pmlschema forward declarations
+namespace physicalModel {
+class Atom;
+class AtomProperties;
+}
+
+#include "PhysicalModelIO.h"
+#include "StructureProperties.h"
+
+/**
+ * @ingroup group_cepmodeling_libraries_pml
+ *
+ * @brief
+ * This class manages all the properties attached to an atom.
+ *
+ **/
+class AtomProperties : public StructureProperties {
+public:
+ /** Default constructor : set the position to the origin, and generate an unique index
+ * @param myPM the physical model the atom belongs to
+ */
+ AtomProperties(PhysicalModel *myPM);
+
+ /** constructor from xml node: try to read and get the properties from xml
+ * @param myPM the physical model the atom belongs to
+ * @param prop the xsd node of properties for this atom.
+ */
+ AtomProperties(PhysicalModel *myPM, physicalModel::AtomProperties xmlAtomProp);
+
+ /** set the position to the origin
+ * @param myPM the physical model the atom belongs to
+ * @param ind an unique index
+ */
+ AtomProperties(PhysicalModel *myPM, const unsigned int ind);
+
+ /** generate an unique index.
+ * @param myPM the physical model the atom belongs to
+ * @param pos the initial position
+ */
+ AtomProperties(PhysicalModel *myPM, const double pos[3]);
+
+ /** everything is given here
+ * @param myPM the physical model the atom belongs to
+ * @param pos the initial position
+ * @param ind an unique index
+ */
+ AtomProperties(PhysicalModel *myPM, const unsigned int ind, const double pos[3]);
+
+ /// the destructor...
+ virtual ~AtomProperties();
+
+ /// print to an output stream in "pseudo" XML format.
+ virtual void xmlPrint(std::ostream &);
+
+ /** Reinitialize the unique index to zero (usually that what you want to do when you
+ * start to load a new PhysicalModel
+ */
+ static void resetUniqueIndex();
+
+ /// get the position of the atom (array of 3 doubles)
+ void getPosition(double pos[3]) const;
+
+ /// set the position of the atom
+ void setPosition(const double [3]);
+
+ /// set the position of the atom
+ void setPosition(const double, const double, const double);
+
+ /** change the position pointer.
+ * This is useful to allocate a big bunch of memory with all the position
+ * in order to improve memory cache usage.
+ * \note this memory is not deleted/cleaned in ~AtomProperties (the destructor)
+ *
+ * @param ptr the pointer to the memory (should have enough space for storing double[3]
+ * @param update update the new memory space using the previously stored position
+ */
+ void setPositionPointer(double *ptr, bool update = true);
+
+private:
+ /// unique number (used to generate unique index for atoms if not given at the instanciation)
+ static unsigned int maxUniqueIndex;
+
+ /** allocate the memory needed for the position (double[3]).
+ * This place in memory is a default, it can be changed using setPositionPointer(..).
+ * This method is called in all the constructors, and only there.
+ */
+ void allocate();
+
+ /// Pointer to the memory triplet that stores the atom's position
+ double *X;
+
+ /// true only if the memory used for the position was allocated in the constructor and not changed afterwards
+ bool allocated;
+};
+
+// --------------- inlines ---------------
+inline void AtomProperties::getPosition(double pos[3]) const {
+ pos[0]=X[0];
+ pos[1]=X[1];
+ pos[2]=X[2];
+}
+
+inline void AtomProperties::setPosition(const double pos[3]) {
+ X[0]=pos[0];
+ X[1]=pos[1];
+ X[2]=pos[2];
+}
+
+inline void AtomProperties::setPosition(const double x,const double y,const double z) {
+ X[0]=x;
+ X[1]=y;
+ X[2]=z;
+}
+
+#endif // ATOMPROPERTIES_H
diff --git a/modeling/libraries/pml/BasicAtomProperties.cpp b/modeling/libraries/pml/BasicAtomProperties.cpp
deleted file mode 100644
index 39dca0c..0000000
--- a/modeling/libraries/pml/BasicAtomProperties.cpp
+++ /dev/null
@@ -1,169 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#include "BasicAtomProperties.h"
-
-//----------------------- Class member init -----------------------
-void BasicAtomProperties::resetUniqueIndex() {
- BasicAtomProperties::maxUniqueIndex = 0;
-}
-
-// initializing the static class member
-unsigned int BasicAtomProperties::maxUniqueIndex = 0;
-
-//----------------------- Constructors -----------------------
-BasicAtomProperties::BasicAtomProperties(PhysicalModel * p) : StructureProperties(p, StructureProperties::ATOM) {
- allocate();
- setPosition(0.0, 0.0, 0.0);
- index = maxUniqueIndex++;
-}
-
-BasicAtomProperties::BasicAtomProperties(PhysicalModel * p, xmlNodePtr node) : StructureProperties(p, StructureProperties::ATOM) {
- allocate();
-
- //search the name attribute
- xmlChar *pname = xmlGetProp(node, (const xmlChar*) "name");
-
- if (pname)
- setName((char*)pname);
-
- xmlFree(pname);
-
- //search the known attributes
- xmlChar *px = xmlGetProp(node, (const xmlChar*) "x");
-
- xmlChar *py = xmlGetProp(node, (const xmlChar*) "y");
-
- xmlChar *pz = xmlGetProp(node, (const xmlChar*) "z");
-
- if (px && py && pz)
- setPosition(atof((char*)px), atof((char*)py), atof((char*)pz));
- else
- setPosition(0.0, 0.0, 0.0);
- xmlFree(px);
- xmlFree(py);
- xmlFree(pz);
-
- xmlChar *pindex = xmlGetProp(node, (const xmlChar*) "index");
-
- if (pindex)
- index = atoi((char*)pindex);
- else
- index = maxUniqueIndex++;
- xmlFree(pindex);
-
- //search the unknown attributes to fill the property fields map
- xmlAttr * attrs = node->properties;
-
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));
-
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
-
- if (pname && xmlStrcmp(pname, (xmlChar*)"name")
- && xmlStrcmp(pname, (xmlChar*)"x")
- && xmlStrcmp(pname, (xmlChar*)"y")
- && xmlStrcmp(pname, (xmlChar*)"z")
- && xmlStrcmp(pname, (xmlChar*)"index")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- domToFields(unknownAttrs);
-
- xmlFree(unknownAttrs);
-}
-
-BasicAtomProperties::BasicAtomProperties(PhysicalModel *p, const double pos[3]) : StructureProperties(p, StructureProperties::ATOM) {
- allocate();
- setPosition(pos);
- index = maxUniqueIndex++;
-}
-
-BasicAtomProperties::BasicAtomProperties(PhysicalModel *p, const unsigned int ind) : StructureProperties(p, StructureProperties::ATOM) {
- allocate();
- setPosition(0.0, 0.0, 0.0);
- index = ind;
-
- if (ind >= maxUniqueIndex)
- maxUniqueIndex = ind + 1;
-}
-
-BasicAtomProperties::BasicAtomProperties(PhysicalModel *p, const unsigned int ind, const double pos[3]) : StructureProperties(p, StructureProperties::ATOM) {
- allocate();
- setPosition(pos);
- index = ind;
-
- if (ind >= maxUniqueIndex)
- maxUniqueIndex = ind + 1;
-}
-
-//----------------------- destructor -----------------------
-BasicAtomProperties::~BasicAtomProperties() {
- if (allocated)
- delete [] X;
-}
-
-//----------------------- allocate -----------------------
-void BasicAtomProperties::allocate() {
- X = new double[3];
- allocated = true;
-}
-
-//----------------------- setPositionPointer -----------------------
-void BasicAtomProperties::setPositionPointer(double * ptr, bool update) {
- // store previous position if needed
- double pos[3];
- if (update) {
- getPosition(pos);
- }
- // delete previous memory to avoid memory leaks, if needed
- if (allocated) {
- delete [] X;
- allocated = false;
- }
- X = ptr;
- // restore if needed
- if (update) {
- setPosition(pos);
- }
-}
-
-//----------------------- beginXML -----------------------
-void BasicAtomProperties::beginXML(std::ostream & o) {
- o << "<atomProperties index=\"" << index << "\"";
- o << " x=\"" << X[0] << "\" y=\"" << X[1] << "\" z=\"" << X[2] << "\"";
-
- if (getName() != "")
- o << " name=\"" << getName().c_str() << "\" ";
-}
-
-//----------------------- endXML -----------------------
-void BasicAtomProperties::endXML(std::ostream & o) {
- o << "/>" << std::endl;
-}
diff --git a/modeling/libraries/pml/BasicAtomProperties.h b/modeling/libraries/pml/BasicAtomProperties.h
deleted file mode 100644
index bbf4019..0000000
--- a/modeling/libraries/pml/BasicAtomProperties.h
+++ /dev/null
@@ -1,146 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef BASICATOMPROPERTIES_H
-#define BASICATOMPROPERTIES_H
-
-
-#include "PhysicalModelIO.h"
-#include "StructureProperties.h"
-/**
- * @ingroup group_cepmodeling_libraries_pml
- *
- * @brief
- * This class is the basic Atom Properties class.
- * You should derive from this class a AtomProperties class and use it to implement your own custom stuff.
- * This is a pure virtual class.
- *
- **/
-class BasicAtomProperties : public StructureProperties {
-public:
- /** Default constructor : set the position to the origin, and generate an unique index
- * @param myPM the physical model the atom belongs to
- */
- BasicAtomProperties(PhysicalModel *myPM);
-
- /** constructor from xml node: try to read and get the properties from xml
- * @param myPM the physical model the atom belongs to
- * @param n the xml node to read to get the information
- */
- BasicAtomProperties(PhysicalModel *myPM, xmlNodePtr n);
-
- /** set the position to the origin
- * @param myPM the physical model the atom belongs to
- * @param ind an unique index
- */
- BasicAtomProperties(PhysicalModel *myPM, const unsigned int ind);
-
- /** generate an unique index.
- * @param myPM the physical model the atom belongs to
- * @param pos the initial position
- */
- BasicAtomProperties(PhysicalModel *myPM, const double pos[3]);
-
- /** everything is given here
- * @param myPM the physical model the atom belongs to
- * @param pos the initial position
- * @param ind an unique index
- */
- BasicAtomProperties(PhysicalModel *myPM, const unsigned int ind, const double pos[3]);
-
- /// the destructor...
- virtual ~BasicAtomProperties();
-
- /// print to an output stream in "pseudo" XML format.
- virtual void xmlPrint(std::ostream &) =0;
-
- /** Reinitialize the unique index to zero (usually that what you want to do when you
- * start to load a new PhysicalModel
- */
- static void resetUniqueIndex();
-
- /// get the position of the atom (array of 3 doubles)
- void getPosition(double pos[3]) const;
-
- /// set the position of the atom
- void setPosition(const double [3]);
-
- /// set the position of the atom
- void setPosition(const double, const double, const double);
-
- /** change the position pointer.
- * This is useful to allocate a big bunch of memory with all the position
- * in order to improve memory cache usage.
- * \note this memory is not deleted/cleaned in ~BasicAtomProperties (the destructor)
- *
- * @param ptr the pointer to the memory (should have enough space for storing double[3]
- * @param update update the new memory space using the previously stored position
- */
- void setPositionPointer(double *ptr, bool update = true);
-
-protected:
- /// write the default xml properties (beginning)
- void beginXML(std::ostream &);
-
- /// write the default xml properties (end)
- void endXML(std::ostream &);
-
-private:
- /// unique number (used to generate unique index for atoms if not given at the instanciation)
- static unsigned int maxUniqueIndex;
-
- /** allocate the memory needed for the position (double[3]).
- * This place in memory is a default, it can be changed using setPositionPointer(..).
- * This method is called in all the constructors, and only there.
- */
- void allocate();
-
- /// Pointer to the memory triplet that stores the atom's position
- double *X;
-
- /// true only if the memory used for the position was allocated in the constructor and not changed afterwards
- bool allocated;
-};
-
-// --------------- inlines ---------------
-inline void BasicAtomProperties::getPosition(double pos[3]) const {
- pos[0]=X[0];
- pos[1]=X[1];
- pos[2]=X[2];
-}
-
-inline void BasicAtomProperties::setPosition(const double pos[3]) {
- X[0]=pos[0];
- X[1]=pos[1];
- X[2]=pos[2];
-}
-
-inline void BasicAtomProperties::setPosition(const double x,const double y,const double z) {
- X[0]=x;
- X[1]=y;
- X[2]=z;
-}
-
-#endif //BasicAtomProperties_H
diff --git a/modeling/libraries/pml/BasicCellProperties.cpp b/modeling/libraries/pml/BasicCellProperties.cpp
deleted file mode 100644
index fb1a278..0000000
--- a/modeling/libraries/pml/BasicCellProperties.cpp
+++ /dev/null
@@ -1,149 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#include "BasicCellProperties.h"
-
-//----------------------- Class member init -----------------------
-void BasicCellProperties::resetUniqueIndex() {
- BasicCellProperties::maxUniqueIndex = 0;
-}
-
-BasicCellProperties::BasicCellProperties(PhysicalModel * p, const StructureProperties::GeometricType t, xmlNodePtr node) : StructureProperties(p, t) {
-
- //search the name attribute
- xmlChar *pname = xmlGetProp(node, (const xmlChar*) "name");
-
- if (pname)
- setName((char*)pname);
-
- xmlFree(pname);
-
- //search the index attribute
- xmlChar *pindex = xmlGetProp(node, (const xmlChar*) "index");
-
- if (pindex)
- index = atoi((char*)pindex);
- else
- index = maxUniqueIndex++;
-
- xmlFree(pindex);
-
- //search the unknown attributes to fill the property fields map
- xmlAttr * attrs = node->properties;
-
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));
-
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
-
- if (pname && xmlStrcmp(pname, (xmlChar*)"name")
- && xmlStrcmp(pname, (xmlChar*)"x")
- && xmlStrcmp(pname, (xmlChar*)"y")
- && xmlStrcmp(pname, (xmlChar*)"z")
- && xmlStrcmp(pname, (xmlChar*)"type")
- && xmlStrcmp(pname, (xmlChar*)"index")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- domToFields(unknownAttrs);
- xmlFree(unknownAttrs);
-}
-
-// initializing the static class member
-unsigned int BasicCellProperties::maxUniqueIndex = 0;
-
-//----------------------- Constructors -----------------------
-BasicCellProperties::BasicCellProperties(PhysicalModel *p, const StructureProperties::GeometricType t) : StructureProperties(p, t) {
- index = maxUniqueIndex++;
-}
-
-BasicCellProperties::BasicCellProperties(PhysicalModel *p, const StructureProperties::GeometricType t, const unsigned int ind) : StructureProperties(p, t) {
- index = ind;
-
- if (ind >= maxUniqueIndex)
- maxUniqueIndex = ind + 1;
-}
-
-/// write the default xml properties (beginning)
-void BasicCellProperties::beginXML(std::ostream & o) {
- o << "<cellProperties index=\"" << index << "\"";
- // print the type
-
- switch (getType()) {
-
- case StructureProperties::TETRAHEDRON:
- o << " type=\"TETRAHEDRON\"";
- break;
-
- case StructureProperties::HEXAHEDRON:
- o << " type=\"HEXAHEDRON\"";
- break;
-
- case StructureProperties::WEDGE:
- o << " type=\"WEDGE\"";
- break;
-
- case StructureProperties::PYRAMID:
- o << " type=\"PYRAMID\"";
- break;
-
- case StructureProperties::POLY_LINE:
- o << " type=\"POLY_LINE\"";
- break;
-
- case StructureProperties::POLY_VERTEX:
- o << " type=\"POLY_VERTEX\"";
- break;
-
- case StructureProperties::LINE:
- o << " type=\"LINE\"";
- break;
-
- case StructureProperties::TRIANGLE:
- o << " type=\"TRIANGLE\"";
- break;
-
- case StructureProperties::QUAD:
- o << " type=\"QUAD\"";
- break;
-
- default:
- o << " type=\"???\"";
- break;
- }
-
- if (getName() != "")
- o << " name=\"" << getName().c_str() << "\" ";
-
-}
-
-/// write the default xml properties (end)
-void BasicCellProperties::endXML(std::ostream & o) {
- o << "/>" << std::endl;
-}
diff --git a/modeling/libraries/pml/BasicCellProperties.h b/modeling/libraries/pml/BasicCellProperties.h
deleted file mode 100644
index d75e201..0000000
--- a/modeling/libraries/pml/BasicCellProperties.h
+++ /dev/null
@@ -1,82 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef BASICCELLPROPERTIES_H
-#define BASICCELLPROPERTIES_H
-
-#include "StructureProperties.h"
-/**
- * @ingroup group_cepmodeling_libraries_pml
- *
- * @brief
- * Describes the properties common to all cells.
- *
- **/
-class BasicCellProperties : public StructureProperties {
-public:
- /** Default constructor : generate an unique index
- * @param myPM the physical model the atom belongs to
- * @param t the type of the cell
- */
- BasicCellProperties(PhysicalModel *myPM, const StructureProperties::GeometricType t);
-
- /** constructor from xml node: try to read and get the properties from xml
- * @param myPM the physical model the atom belongs to
- * @param t the type of the cell
- * @param n the xml node to read to get the information
- */
- BasicCellProperties(PhysicalModel *myPM, const StructureProperties::GeometricType t, xmlNodePtr n);
-
- /** Use this constructor when you specifically want to set the index
- * @param myPM the physical model the atom belongs to
- * @param t the type of the cell
- * @param ind an unique index
- */
- BasicCellProperties(PhysicalModel *myPM, const StructureProperties::GeometricType t, const unsigned int ind);
-
- /// the destructor...
- virtual ~BasicCellProperties() {};
-
- /** print to an output stream in "pseaudo" XML format.
- */
- virtual void xmlPrint(std::ostream &) =0;
-
- /** Reinitialize the unique index to zero (usually that what you want to do when you
- * start to load a new PhysicalModel
- */
- static void resetUniqueIndex();
-
-protected:
- /// write the default xml properties (beginning)
- void beginXML(std::ostream &);
- /// write the default xml properties (end)
- void endXML(std::ostream &);
-
-private:
- /// unique number (used to generate unique index for cells if not given at the instanciation)
- static unsigned int maxUniqueIndex;
-
-};
-#endif //BASICCELLPROPERTIES_H
diff --git a/modeling/libraries/pml/BasicSCProperties.cpp b/modeling/libraries/pml/BasicSCProperties.cpp
deleted file mode 100644
index 12d0a2b..0000000
--- a/modeling/libraries/pml/BasicSCProperties.cpp
+++ /dev/null
@@ -1,125 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "BasicSCProperties.h"
-
-BasicSCProperties::BasicSCProperties(PhysicalModel * p, xmlNodePtr node) : Properties(p) {
- alloc();
-
- //search the name attribute
- xmlChar *pname = xmlGetProp(node, (const xmlChar*) "name");
-
- if (pname)
- setName(std::string((char*)pname));
-
- xmlFree(pname);
-
- //get the pointer on color
- xmlNodePtr SCchild = node->xmlChildrenNode;
-
- while (SCchild && xmlStrcmp(SCchild->name, (const xmlChar*)"color"))
- SCchild = SCchild->next;
-
- if (SCchild) {
- //search the color attributes
- xmlChar *pr = xmlGetProp(SCchild, (const xmlChar*) "r");
- xmlChar *pg = xmlGetProp(SCchild, (const xmlChar*) "g");
- xmlChar *pb = xmlGetProp(SCchild, (const xmlChar*) "b");
- xmlChar *pa = xmlGetProp(SCchild, (const xmlChar*) "a");
-
- if (pr && pg && pb) {
- setRGB(atof((char*)pr), atof((char*)pg), atof((char*)pb));
-
- if (pa)
- setAlpha(atof((char*)pa));
- else
- setAlpha(1.0);
- } else
- setColor(DEFAULT);
-
- xmlFree(pr);
- xmlFree(pg);
- xmlFree(pb);
- xmlFree(pa);
- } else
- setColor(DEFAULT);
-
- //search the renderingmode attribute
- xmlChar *pmode = xmlGetProp(node, (const xmlChar*) "mode");
-
- if (pmode) {
- if (!xmlStrcmp(pmode, (const xmlChar*)"NONE"))
- setMode(RenderingMode::NONE);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"POINTS"))
- setMode(RenderingMode::POINTS);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"POINTS_AND_SURFACE"))
- setMode(RenderingMode::POINTS_AND_SURFACE);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"SURFACE"))
- setMode(RenderingMode::SURFACE);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"WIREFRAME_AND_SURFACE"))
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"WIREFRAME_AND_POINTS"))
- setMode(RenderingMode::WIREFRAME_AND_POINTS);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"WIREFRAME"))
- setMode(RenderingMode::WIREFRAME);
-
- if (!xmlStrcmp(pmode, (const xmlChar*)"WIREFRAME_AND_SURFACE_AND_POINTS"))
- setMode(RenderingMode::WIREFRAME_AND_SURFACE_AND_POINTS);
-
- xmlFree(pmode);
- } else
- setMode(RenderingMode::NONE);
-
-
- //search the unknown attributes to fill the property fields map
- xmlAttr * attrs = node->properties;
-
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));;
-
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
-
- if (pname && xmlStrcmp(pname, (xmlChar*)"name") &&
- xmlStrcmp(pname, (xmlChar*)"index") &&
- xmlStrcmp(pname, (xmlChar*)"mode")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- domToFields(unknownAttrs);
-
- xmlFree(unknownAttrs);
-}
-
diff --git a/modeling/libraries/pml/BasicSCProperties.h b/modeling/libraries/pml/BasicSCProperties.h
deleted file mode 100644
index ead5cd4..0000000
--- a/modeling/libraries/pml/BasicSCProperties.h
+++ /dev/null
@@ -1,304 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef BASICSCPROPERTIES_H
-#define BASICSCPROPERTIES_H
-
-#include "Properties.h"
-#include "RenderingMode.h"
-/**
- * @ingroup group_cepmodeling_libraries_pml
- *
- * @brief
- * A special class to manage the basic structural component properties.
- *
- * You should derive from this class a StucturalComponentProperties class and use
- * it to implement your own custom stuff.
- * This is a pure virtual class.
- *
- **/
-class BasicSCProperties : public Properties {
-
-public:
- /** Default color settings
- */
- enum Color {
- DEFAULT,
- RED, /**< full complete flashy red*/
- GREEN,
- BLUE,
- GRAY,
- OTHER
- };
-
- /** use a Color constant to set the color */
- BasicSCProperties(PhysicalModel *p, const Color c) : Properties(p) {
- alloc();
- setColor(c);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- BasicSCProperties(PhysicalModel * p, xmlNodePtr node);
- BasicSCProperties(PhysicalModel *p, const Color c, const std::string n) : Properties(p, n) {
- alloc();
- setColor(c);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- /** use a double[3] array to set the color */
- BasicSCProperties(PhysicalModel *p, const double * rgb) : Properties(p) {
- alloc();
- setRGB(rgb);
- setAlpha(1.0);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- BasicSCProperties(PhysicalModel *p, const double * rgb, const std::string n) : Properties(p, n) {
- alloc();
- setRGB(rgb);
- setAlpha(1.0);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- /** use 3 floats to set the color */
- BasicSCProperties(PhysicalModel *p, const double r, const double g, const double b) : Properties(p) {
- alloc();
- setRGB(r, g, b);
- setAlpha(1.0);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- BasicSCProperties(PhysicalModel *p, const double r, const double g, const double b, const std::string n) : Properties(p, n) {
- alloc();
- setRGB(r, g, b);
- setAlpha(1.0);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- /** defaultcolor is gray */
- BasicSCProperties(PhysicalModel *p) : Properties(p) {
- alloc();
- setColor(DEFAULT);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- }
-
- ;
- BasicSCProperties(PhysicalModel *p, const std::string n) : Properties(p, n) {
- alloc();
- setColor(DEFAULT);
- setMode(RenderingMode::WIREFRAME_AND_SURFACE);
- };
-
- virtual ~BasicSCProperties() {
- delete [] colorRGBA;
- };
-
- double getRed() const;
- double getGreen() const;
- double getBlue() const;
- double getAlpha() const;
- double * getRGB() const;
- double * getRGBA() const;
- Color getColor() const;
-
- void setRed(const double r);
- void setGreen(const double g);
- void setBlue(const double b);
- void setAlpha(const double a);
- void setRGB(const double * rgb);
- void setRGB(const double r, const double g, const double b);
- void setRGBA(const double r, const double g, const double b, const double a);
- void setRGBA(const double * rgba);
- void setColor(Color c);
-
- void setMode(const RenderingMode::Mode);
- RenderingMode::Mode getMode() const;
- bool isVisible(const RenderingMode::Mode mode) const;
- void setVisible(const RenderingMode::Mode, const bool);
-
- /// get the string equivalent to the enum rendering mode
- std::string getModeString() const;
-
- /** print to an output stream in "pseaudo" XML format.
- * This method is to be implemented in the subclass (StructuralComponentProperties).
- * It HAS to call the beginXML() at the beginning and the endXML() at the end.
- */
- virtual void xmlPrint(std::ostream &) = 0;
-
-protected:
- /// write the default xml properties (beginning)
- void beginXML(std::ostream &);
- /// write the default xml properties (end)
- void endXML(std::ostream &);
-
-private:
- double *colorRGBA;
- void alloc();
- Color color;
- RenderingMode mode;
-};
-
-// inlines
-inline double BasicSCProperties::getRed() const {
- return colorRGBA[0];
-}
-
-inline double BasicSCProperties::getGreen() const {
- return colorRGBA[1];
-}
-
-inline double BasicSCProperties::getBlue() const {
- return colorRGBA[2];
-}
-
-inline double BasicSCProperties::getAlpha() const {
- return colorRGBA[3];
-}
-
-inline double * BasicSCProperties::getRGB() const {
- return colorRGBA;
-}
-
-inline double * BasicSCProperties::getRGBA() const {
- return colorRGBA;
-}
-
-inline BasicSCProperties::Color BasicSCProperties::getColor() const {
- return color;
-}
-
-// TODO : a test for the color, if a composant is changed it might still be something we know
-// so color = OTHER is a bit presumptuous
-inline void BasicSCProperties::setRed(const double r) {
- colorRGBA[0] = r;
- color = OTHER;
-}
-
-inline void BasicSCProperties::setGreen(const double g) {
- colorRGBA[1] = g;
- color = OTHER;
-}
-
-inline void BasicSCProperties::setBlue(const double b) {
- colorRGBA[2] = b;
- color = OTHER;
-}
-
-inline void BasicSCProperties::setAlpha(const double a) {
- colorRGBA[3] = a;
- color = OTHER;
-}
-
-inline void BasicSCProperties::setRGB(const double r, const double g, const double b) {
- setRed(r);
- setGreen(g);
- setBlue(b);
- color = OTHER;
-}
-
-inline void BasicSCProperties::setRGB(const double * rgb) {
- setRGB(rgb[0], rgb[1], rgb[2]);
- color = OTHER;
-}
-
-inline void BasicSCProperties::setRGBA(const double r, const double g, const double b, const double a) {
- setRed(r);
- setGreen(g);
- setBlue(b);
- setAlpha(a);
- color = OTHER;
-}
-
-inline void BasicSCProperties::setRGBA(const double *rgba) {
- setRGBA(rgba[0], rgba[1], rgba[2], rgba[3]);
- color = OTHER;
-}
-
-inline void BasicSCProperties::setColor(Color c) {
- switch (c) {
-
- case RED:
- setRGBA(1.0, 0.0, 0.0, 1.0);
- break;
-
- case GREEN:
- setRGBA(0.0, 1.0, 0.0, 1.0);
- break;
-
- case BLUE:
- setRGBA(0.0, 0.0, 1.0, 1.0);
- break;
-
- default: // DEFAULT:or GRAY:or OTHER
- setRGBA(0.8, 0.8, 0.8, 1.0);
- break;
- }
-
- color = c;
-}
-
-inline void BasicSCProperties::alloc() {
- colorRGBA = new double[4];
-}
-
-inline void BasicSCProperties::setMode(const RenderingMode::Mode m) {
- mode.setMode(m);
-}
-
-inline RenderingMode::Mode BasicSCProperties::getMode() const {
- return mode.getMode();
-}
-
-inline std::string BasicSCProperties::getModeString() const {
- return mode.getModeString();
-}
-
-inline bool BasicSCProperties::isVisible(const RenderingMode::Mode m) const {
- return mode.isVisible(m);
-}
-
-inline void BasicSCProperties::setVisible(const RenderingMode::Mode m, const bool b) {
- this->mode.setVisible(m, b);
-}
-
-// write the default xml properties (beginning)
-inline void BasicSCProperties::beginXML(std::ostream & o) {
- // print the name if there is one
- if (getName() != "")
- o << " name=\"" << getName().c_str() << "\"";
-
- // the mode property (if different than default)
- if (mode.getMode() != RenderingMode::NONE) {
- o << " mode=\"" << mode.getModeString() << "\"";
- }
-}
-
-// write the default xml properties (end)
-inline void BasicSCProperties::endXML(std::ostream &) {
- // nothing to be done
-}
-
-
-#endif
diff --git a/modeling/libraries/pml/CMakeLists.txt b/modeling/libraries/pml/CMakeLists.txt
index 4799d2f..129b124 100644
--- a/modeling/libraries/pml/CMakeLists.txt
+++ b/modeling/libraries/pml/CMakeLists.txt
@@ -1,20 +1,13 @@
project(PML)
-
-cmake_minimum_required(VERSION 2.6)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_pml)
-else()
- set(LIB_NAME library-pml)
-endif()
-
+
# Is this tool is compiled inside or outside CAMITK (as a standalone)?
if (NOT CEP_NAME STREQUAL "modeling")
# if this tool is compiled independently from CamiTK
set(PML_STANDALONE ON CACHE BOOL "ON only if PML compiled outside CAMITK SDK")
- message(SEND_ERROR "Compilation of PML outside CamiTK SDK not implemented yet. Please contact authors")
+ message(FATAL_ERROR "Compilation of PML outside CamiTK SDK not implemented yet. Please contact authors")
endif()
+# Version (in CamiTK)
set(VERSION_STRING "pml - ${CAMITK_VERSION_STRING} (c) UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525")
configure_file(${PML_SOURCE_DIR}/PhysicalModelVersion.h.in ${PML_BINARY_DIR}/PhysicalModelVersion.h)
@@ -23,9 +16,9 @@ set (PhysicalModelProperties_DIR ${PML_SOURCE_DIR}/PhysicalProperties)
set( HEADERS
Atom.h
- BasicAtomProperties.h
+ AtomProperties.h
Cell.h
- BasicCellProperties.h
+ CellProperties.h
Component.h
MultiComponent.h
PhysicalModel.h
@@ -33,33 +26,27 @@ set( HEADERS
PhysicalModelIO.h
Properties.h
StructuralComponent.h
- BasicSCProperties.h
+ StructuralComponentProperties.h
Structure.h
StructureProperties.h
PMLAbortException.h
PMLTransform.h
RenderingMode.h
- ${PhysicalModelProperties_DIR}/AtomProperties.h
- ${PhysicalModelProperties_DIR}/CellProperties.h
- ${PhysicalModelProperties_DIR}/StructuralComponentProperties.h
)
set(SRCS
Atom.cpp
- BasicAtomProperties.cpp
+ AtomProperties.cpp
Cell.cpp
Component.cpp
- BasicCellProperties.cpp
+ CellProperties.cpp
MultiComponent.cpp
PhysicalModel.cpp
StructuralComponent.cpp
- BasicSCProperties.cpp
Structure.cpp
StructureProperties.cpp
+ StructuralComponentProperties.cpp
PMLTransform.cpp
- ${PhysicalModelProperties_DIR}/AtomProperties.cpp
- ${PhysicalModelProperties_DIR}/CellProperties.cpp
- ${PhysicalModelProperties_DIR}/StructuralComponentProperties.cpp
Properties.cpp
${HEADERS}
)
@@ -68,28 +55,13 @@ set(SRCS
camitk_library(STATIC
SOURCES ${SRCS}
INCLUDE_DIRECTORIES ${PhysicalModelProperties_DIR}
- NEEDS_LIBXML2
+ NEEDS_XSD
+ NEEDS_CEP_LIBRARIES pmlschema
HEADERS_TO_INSTALL ${HEADERS}
CEP_NAME CEP_MODELING
DESCRIPTION "Tools to describe a biomechanical model."
)
-#-----------
-# testing
-#-----------
-add_subdirectory(test)
-
-#-----------
-# tools
-#-----------
-add_subdirectory(tools)
-
-# lib installation
-# install(TARGETS pml
- # ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- # COMPONENT pml
-# )
-
#-------------------
# api documentation
#-------------------
diff --git a/modeling/libraries/pml/COPYING b/modeling/libraries/pml/COPYING
deleted file mode 100644
index 5b6e7c6..0000000
--- a/modeling/libraries/pml/COPYING
+++ /dev/null
@@ -1,340 +0,0 @@
- GNU GENERAL PUBLIC LICENSE
- Version 2, June 1991
-
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.
- 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
- Preamble
-
- The licenses for most software are designed to take away your
-freedom to share and change it. By contrast, the GNU General Public
-License is intended to guarantee your freedom to share and change free
-software--to make sure the software is free for all its users. This
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-Foundation's software and to any other program whose authors commit to
-using it. (Some other Free Software Foundation software is covered by
-the GNU Library General Public License instead.) You can apply it to
-your programs, too.
-
- When we speak of free software, we are referring to freedom, not
-price. Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
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- TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
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-
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-
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diff --git a/modeling/libraries/pml/Cell.cpp b/modeling/libraries/pml/Cell.cpp
index 043784b..f6c546c 100644
--- a/modeling/libraries/pml/Cell.cpp
+++ b/modeling/libraries/pml/Cell.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,31 +29,86 @@
#include <math.h>
+// pmlschema includes
+#include <Cell.hxx>
+
//----------------------- Constructors -----------------------
-Cell::Cell(PhysicalModel *p, const StructureProperties::GeometricType t)
- : StructuralComponent(p) {
- this->Structure::properties = new CellProperties(p, t);
+Cell::Cell (PhysicalModel *p, const StructureProperties::GeometricType t)
+ : StructuralComponent (p) {
+ this->Structure::properties = new CellProperties (p, t);
+ parentSC = NULL;
}
-Cell::Cell(PhysicalModel *p, const StructureProperties::GeometricType t, xmlNodePtr node)
- : StructuralComponent(p, node) {
- for (xmlNodePtr child = node->xmlChildrenNode; child != NULL; child = child->next) {
- //find properties node
- if (!xmlStrcmp(child->name, (const xmlChar*)"cellProperties"))
- this->Structure::properties = new CellProperties(p, t, child);
-
- //find nrOfStructures node
- if (!xmlStrcmp(child->name, (const xmlChar*)"nrOfStructures")) {
- xmlChar * prop = xmlGetProp(child, (xmlChar*)("value"));
- unsigned int val = atoi((char*)prop);
- this->plannedNumberOfStructures(val);
- }
+Cell::Cell (PhysicalModel *p, physicalModel::Cell xmlCell, StructuralComponent* sc) : StructuralComponent (p) {
+ // Add the basic cell structure properties
+ StructureProperties::GeometricType cellType = StructureProperties::INVALID;
+ switch (xmlCell.cellProperties().type()) {
+ case physicalModel::GeometricType::ATOM:
+ cellType = StructureProperties::ATOM;
+ break;
+ case physicalModel::GeometricType::LINE:
+ cellType = StructureProperties::LINE;
+ break;
+ case physicalModel::GeometricType::TRIANGLE:
+ cellType = StructureProperties::TRIANGLE;
+ break;
+ case physicalModel::GeometricType::QUAD:
+ cellType = StructureProperties::QUAD;
+ break;
+ case physicalModel::GeometricType::TETRAHEDRON:
+ cellType = StructureProperties::TETRAHEDRON;
+ break;
+ case physicalModel::GeometricType::WEDGE:
+ cellType = StructureProperties::WEDGE;
+ break;
+ case physicalModel::GeometricType::PYRAMID:
+ cellType = StructureProperties::PYRAMID;
+ break;
+ case physicalModel::GeometricType::HEXAHEDRON:
+ cellType = StructureProperties::HEXAHEDRON;
+ break;
+ case physicalModel::GeometricType::POLY_LINE:
+ cellType = StructureProperties::POLY_LINE;
+ break;
+ case physicalModel::GeometricType::POLY_VERTEX:
+ cellType = StructureProperties::POLY_VERTEX;
+ break;
+ default: // INVALID
+ break;
+ }
+ this->Structure::properties = new CellProperties (p, cellType, xmlCell.cellProperties());
+
+ // its direct parent component
+ parentSC = sc;
+
+ // number of structures (optional)
+ if (xmlCell.nrOfStructures().present())
+ plannedNumberOfStructures (xmlCell.nrOfStructures().get().value());
+
+ // color (optional)
+ if (xmlCell.color().present())
+ setColor (xmlCell.color().get().r(),
+ xmlCell.color().get().g(),
+ xmlCell.color().get().b(),
+ xmlCell.color().get().a());
+
+ // parse the cell's atom references
+ physicalModel::Cell::atomRef_sequence xmlAtoms = xmlCell.atomRef();
+ for (physicalModel::Cell::atomRef_iterator atomRefIt = xmlAtoms.begin();
+ atomRefIt != xmlAtoms.end();
+ atomRefIt++) {
+ physicalModel::AtomRef xmlAtomRef = (*atomRefIt);
+ Atom* a = p->getAtom (xmlAtomRef.index());
+ if (a)
+ addStructure (a);
+ else
+ std::cerr << "Cell::Cell: Cannot find Atom for reference: " << xmlAtomRef.index() << std::endl;
}
}
-Cell::Cell(PhysicalModel *p, const StructureProperties::GeometricType t, const unsigned int ind)
- : StructuralComponent(p) {
- this->Structure::properties = new CellProperties(p, t, ind);
+Cell::Cell (PhysicalModel *p, const StructureProperties::GeometricType t, const unsigned int ind)
+ : StructuralComponent (p) {
+ this->Structure::properties = new CellProperties (p, t, ind);
}
//----------------------- Destructor -----------------------
@@ -62,7 +117,7 @@ Cell::~Cell() {
deleteProperties();
// if (Structure::properties)
- delete(CellProperties*) Structure::properties;
+ delete (CellProperties*) Structure::properties;
if (StructuralComponent::atomList)
delete StructuralComponent::atomList;
@@ -77,15 +132,15 @@ Cell::~Cell() {
}
//----------------------- setIndex -----------------------
-bool Cell::setIndex(const unsigned int index) {
+bool Cell::setIndex (const unsigned int index) {
// set the property
- Structure::setIndex(index);
+ Structure::setIndex (index);
// tell the physical model about the change (and return true if insertion was ok)
- return getPhysicalModel()->addGlobalIndexCellPair(std::GlobalIndexStructurePair(index, this));
+ return getPhysicalModel()->addGlobalIndexCellPair (std::GlobalIndexStructurePair (index, this));
}
// --------------- makePrintData ---------------
-bool Cell::makePrintData(const StructuralComponent * sc) {
+bool Cell::makePrintData (const StructuralComponent * sc) {
// if the sc (=the object that is calling this method) is the first in the
// mySC list to be a exclusive component, it means the cell has not been written yet. If it is not
// the first exclusive component in the mySC list, the cell could simply writes its cell ref
@@ -94,7 +149,7 @@ bool Cell::makePrintData(const StructuralComponent * sc) {
unsigned int i = 0;
while (!isExclusive && i < getNumberOfStructuralComponents()) {
- isExclusive = getStructuralComponent(i)->isExclusive();
+ isExclusive = getStructuralComponent (i)->isExclusive();
if (!isExclusive)
i++;
@@ -108,29 +163,29 @@ bool Cell::makePrintData(const StructuralComponent * sc) {
// - the first exclusive component is sc
// - there are no exclusive components for this cell and sc is the first SC
if (isExclusive)
- return (sc == getStructuralComponent(i));
+ return (sc == getStructuralComponent (i));
else
- return (sc == getStructuralComponent(0));
+ return (sc == getStructuralComponent (0));
}
// --------------- xmlPrint ---------------
-void Cell::xmlPrint(std::ostream &o, const StructuralComponent *sc) {
+void Cell::xmlPrint (std::ostream &o, const StructuralComponent *sc) {
// do what's our duty
- if (makePrintData(sc)) {
+ if (makePrintData (sc)) {
// print out all the information...
o << "<cell>" << std::endl;
// ...the properties...
- ((CellProperties *)Structure::properties)->xmlPrint(o);
+ ( (CellProperties *) Structure::properties)->xmlPrint (o);
// ... and the color (if it is not the default one) ...
- if (((StructuralComponentProperties *)StructuralComponent::properties)->getColor() != StructuralComponentProperties::DEFAULT) {
- o << "<color r=\"" << ((StructuralComponentProperties *)StructuralComponent::properties)->getRed();
- o << "\" g=\"" << ((StructuralComponentProperties *)StructuralComponent::properties)->getGreen();
- o << "\" b=\"" << ((StructuralComponentProperties *)StructuralComponent::properties)->getBlue();
- o << "\" a=\"" << ((StructuralComponentProperties *)StructuralComponent::properties)->getAlpha() << "\" />" << std::endl;
+ if ( ( (StructuralComponentProperties *) StructuralComponent::properties)->getColor() != StructuralComponentProperties::DEFAULT) {
+ o << "<color r=\"" << ( (StructuralComponentProperties *) StructuralComponent::properties)->getRed();
+ o << "\" g=\"" << ( (StructuralComponentProperties *) StructuralComponent::properties)->getGreen();
+ o << "\" b=\"" << ( (StructuralComponentProperties *) StructuralComponent::properties)->getBlue();
+ o << "\" a=\"" << ( (StructuralComponentProperties *) StructuralComponent::properties)->getAlpha() << "\"/>" << std::endl;
}
// optimize the memory allocation for reading
@@ -138,13 +193,13 @@ void Cell::xmlPrint(std::ostream &o, const StructuralComponent *sc) {
// ... and finally the ref to the atoms
for (unsigned int i = 0; i < structures.size(); i++) {
- o << "<atomRef index=\"" << structures[i]->getIndex() << "\" />" << std::endl;
+ o << "<atomRef index=\"" << structures[i]->getIndex() << "\"/>" << std::endl;
}
o << "</cell>" << std::endl;
} else {
// print only out the cellRef
- o << "<cellRef index=\"" << getIndex() << "\" />" << std::endl;
+ o << "<cellRef index=\"" << getIndex() << "\"/>" << std::endl;
}
}
@@ -153,164 +208,164 @@ void Cell::deleteAllStructures() {
// here the list elements (i.e. atoms) are NOT deleted
// but the list is cleared and cell removed from sc list of atoms
for (unsigned int i = 0; i < structures.size(); i++) {
- Atom* a=(Atom*)structures[i];
- a->removeStructuralComponent(this);
+ Atom* a= (Atom*) structures[i];
+ a->removeStructuralComponent (this);
}
structures.clear();
}
// ------------------ getProperties ---------------------
CellProperties * Cell::getProperties() {
- return ((CellProperties *)Structure::properties);
+ return ( (CellProperties *) Structure::properties);
}
// ------------------ getTriangleFaces ---------------------
StructuralComponent * Cell::getTriangleFaces() {
- StructuralComponent * facets = new StructuralComponent(getPhysicalModel());
+ StructuralComponent * facets = new StructuralComponent (getPhysicalModel());
Cell * face;
switch (getProperties()->getType()) {
case StructureProperties::HEXAHEDRON :
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(2));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(7));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(7));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(4));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(7));
- face->addStructure(getStructure(6));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(2));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(6));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(6));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(7));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (2));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (7));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (7));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (4));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (7));
+ face->addStructure (getStructure (6));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (2));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (6));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (6));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (7));
+ facets->addStructure (face);
return facets;
case StructureProperties::TETRAHEDRON :
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(2));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (2));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
return facets;
case StructureProperties::WEDGE :
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(4));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(4));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (4));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (4));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
return facets;
case StructureProperties::QUAD :
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(2));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::TRIANGLE);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (2));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::TRIANGLE);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
return facets;
case StructureProperties::TRIANGLE :
- facets->addStructure(this);
+ facets->addStructure (this);
return facets;
default :
return NULL;
@@ -320,70 +375,70 @@ StructuralComponent * Cell::getTriangleFaces() {
// ------------------ getQuadFaces ---------------------
StructuralComponent * Cell::getQuadFaces() {
- StructuralComponent * facets = new StructuralComponent(getPhysicalModel());
+ StructuralComponent * facets = new StructuralComponent (getPhysicalModel());
Cell * face;
switch (getProperties()->getType()) {
case StructureProperties::HEXAHEDRON :
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(7));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(4));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(7));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(2));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(6));
- face->addStructure(getStructure(7));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (7));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (4));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (7));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (2));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (6));
+ face->addStructure (getStructure (7));
+ facets->addStructure (face);
return facets;
case StructureProperties::WEDGE :
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(5));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(1));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(1));
- face->addStructure(getStructure(4));
- face->addStructure(getStructure(3));
- facets->addStructure(face);
- face = new Cell(getPhysicalModel(), StructureProperties::QUAD);
- face->addStructure(getStructure(2));
- face->addStructure(getStructure(0));
- face->addStructure(getStructure(3));
- face->addStructure(getStructure(5));
- facets->addStructure(face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (5));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (1));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (1));
+ face->addStructure (getStructure (4));
+ face->addStructure (getStructure (3));
+ facets->addStructure (face);
+ face = new Cell (getPhysicalModel(), StructureProperties::QUAD);
+ face->addStructure (getStructure (2));
+ face->addStructure (getStructure (0));
+ face->addStructure (getStructure (3));
+ face->addStructure (getStructure (5));
+ facets->addStructure (face);
return facets;
case StructureProperties::QUAD :
- facets->addStructure(this);
+ facets->addStructure (this);
return facets;
default :
return NULL;
@@ -397,12 +452,12 @@ double * Cell::normal() {
double * N = new double[3];
double v1[3], v2[3];
double posi[3], posip1[3];
- ((Atom*)getStructure(0))->getPosition(posip1);
- ((Atom*)getStructure(2))->getPosition(posi);
+ ( (Atom*) getStructure (0))->getPosition (posip1);
+ ( (Atom*) getStructure (2))->getPosition (posi);
v1[0] = posi[0] - posip1[0];
v1[1] = posi[1] - posip1[1];
v1[2] = posi[2] - posip1[2];
- ((Atom*)getStructure(1))->getPosition(posi);
+ ( (Atom*) getStructure (1))->getPosition (posi);
v2[0] = posi[0] - posip1[0];
v2[1] = posi[1] - posip1[1];
v2[2] = posi[2] - posip1[2];
@@ -411,7 +466,7 @@ double * Cell::normal() {
N[1] = v1[2] * v2[0] - v1[0] * v2[2];
N[2] = v1[0] * v2[1] - v1[1] * v2[0];
- double norm = sqrt(N[0] * N[0] + N[1] * N[1] + N[2] * N[2]);
+ double norm = sqrt (N[0] * N[0] + N[1] * N[1] + N[2] * N[2]);
N[0] /= norm;
N[1] /= norm;
@@ -432,13 +487,13 @@ double Cell::surface() {
nbElem = Cell::getNumberOfStructures();
double posi[3], posip1[3];
- ((Atom*)getStructure(0))->getPosition(posip1);
+ ( (Atom*) getStructure (0))->getPosition (posip1);
for (unsigned int i = 0; i < nbElem; i++) {
posi[0] = posip1[0];
posi[1] = posip1[1];
posi[2] = posip1[2];
- ((Atom*)getStructure((i + 1) % nbElem))->getPosition(posip1);
+ ( (Atom*) getStructure ( (i + 1) % nbElem))->getPosition (posip1);
//Cross(posi, posip1, inter);
A[0] += posi[1] * posip1[2] - posi[2] * posip1[1];
A[1] += posi[2] * posip1[0] - posi[0] * posip1[2];
@@ -465,7 +520,7 @@ double Cell::surface() {
double surface = 0.0;
for (unsigned int i = 0 ; i < facets->getNumberOfCells() ; i++) {
- surface += facets->getCell(i)->surface();
+ surface += facets->getCell (i)->surface();
}
delete facets;
return surface;
@@ -477,23 +532,61 @@ double Cell::surface() {
double Cell::volume() {
StructuralComponent * facets = getTriangleFaces();
- if (!facets || getProperties()->getType() == StructureProperties::QUAD || getProperties()->getType() == StructureProperties::TRIANGLE)
+ if (!facets || getProperties()->getType() == StructureProperties::QUAD /* || getProperties()->getType() == StructureProperties::TRIANGLE*/)
return 0.0;
double vol = 0.0;
Cell * face;
- for (unsigned int i = 0; i < facets->getNumberOfCells(); i++) {
- face = facets->getCell(i);
- double pos[3];
- ((Atom*)face->getStructure(0))->getPosition(pos);
- double * N = face->normal();
- vol += face->surface() * (pos[0] * N[0] + pos[1] * N[1] + pos[2] * N[2]);
+ // volume can be computed with an closed triangular mesh with all normals pointing outwards
+ if(getProperties()->getType() == StructureProperties::TRIANGLE) {
+
+ //TODO: check if the mesh is closed with normals pointing outwards ?
+ for (unsigned int i = 0; i < facets->getNumberOfCells(); i++) {
+ face = facets->getCell (i);
+
+ double p1[3], p2[3], p3[3];
+ ( (Atom*) face->getStructure (0))->getPosition (p1);
+ ( (Atom*) face->getStructure (1))->getPosition (p2);
+ ( (Atom*) face->getStructure (2))->getPosition (p3);
+ vol+= face->signedVolumeTriangle(p1,p2,p3);
+ }
+ // do not check if the volume is negative because it CAN be negative
+ // the volume of an enclosed triangular mesh is the sum of positive and negative
+ // volumes of teatrahedra from origin to each triangular face.
+
+
+ } else {
+
+ for (unsigned int i = 0; i < facets->getNumberOfCells(); i++) {
+ face = facets->getCell (i);
+ double pos[3];
+ ( (Atom*) face->getStructure (0))->getPosition (pos);
+ double * N = face->normal();
+ vol += face->surface() * (pos[0] * N[0] + pos[1] * N[1] + pos[2] * N[2]);
+ }
+ vol /= 3.0;
+ if (vol < 0)
+ vol = -vol;
}
+
delete facets;
- vol /= 3.0;
+ return vol;
+
+}
- return vol > 0 ? vol : -vol;
+//-----------signedVolumeTriangle--------------------------------
+double Cell::signedVolumeTriangle(double p1[3], double p2[3], double p3[3]) {
+
+ double v321 = p3[0]*p2[1]*p1[2];
+ double v231 = p2[0]*p3[1]*p1[2];
+ double v312 = p3[0]*p1[1]*p2[2];
+ double v132 = p1[0]*p3[1]*p2[2];
+ double v213 = p2[0]*p1[1]*p3[2];
+ double v123 = p1[0]*p2[1]*p3[2];
+ double vol = (1.0/6.0)*(-v321 + v231 + v312 - v132 - v213 + v123);
+ return vol;
}
+
diff --git a/modeling/libraries/pml/Cell.h b/modeling/libraries/pml/Cell.h
index 65874a2..8f040d9 100644
--- a/modeling/libraries/pml/Cell.h
+++ b/modeling/libraries/pml/Cell.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,6 +29,11 @@
#include "Structure.h"
#include "StructuralComponent.h"
+//pmlschema forward declarations
+namespace physicalModel {
+class Cell;
+}
+
class CellProperties;
/**
* @ingroup group_cepmodeling_libraries_pml
@@ -38,27 +43,27 @@ class CellProperties;
* It is the most basic component composing a physical model.
*
**/
-class Cell : public Structure , public StructuralComponent {
+class Cell : public Structure, public StructuralComponent {
public:
/** constructor that generates a unique index
* @param myPM the physical model the atom belongs to
* @param t the type of the cell
*/
- Cell(PhysicalModel *myPM, const StructureProperties::GeometricType t);
+ Cell ( PhysicalModel * myPM, const StructureProperties::GeometricType t );
/** constructor from xml node: try to read and get the parameters from xml
* @param myPM the physical model the atom belongs to
- * @param t the type of the cell
- * @param n the xml node to read to get the information
+ * @param xmlCell the xml node to read to get the information
+ * @param sc the direct parent structural component that owns this cell
*/
- Cell(PhysicalModel *myPM, const StructureProperties::GeometricType t, xmlNodePtr n);
+ Cell ( PhysicalModel * myPM, physicalModel::Cell xmlCell, StructuralComponent * sc );
/** When you know the index of the cell, use this constructor.
* @param myPM the physical model the atom belongs to
* @param t the type of the cell
* @param ind give the unique index
*/
- Cell(PhysicalModel *myPM, const StructureProperties::GeometricType t, const unsigned int ind);
+ Cell ( PhysicalModel * myPM, const StructureProperties::GeometricType t, const unsigned int ind );
/// the destructor, my tailor. BECAREFUL: the atoms should not not be deleted here...
virtual ~Cell();
@@ -68,10 +73,10 @@ public:
* list of composing SC, then a cellRef tag is printed (otherwise the list
* of atom is printed).
*/
- void xmlPrint(std::ostream &, const StructuralComponent *);
+ void xmlPrint ( std::ostream &, const StructuralComponent * );
/** return true only if the parameter is equal to "MultiComponent" */
- virtual bool isInstanceOf(const char *) const;
+ virtual bool isInstanceOf ( const char * ) const;
/**
* This method overload the one defined in StructuralComponent.
@@ -85,12 +90,12 @@ public:
CellProperties * getProperties();
/// overloaded from Structural component, always return StructuralComponent::ATOMS
- StructuralComponent::ComposedBy composedBy();
+ virtual StructuralComponent::ComposedBy composedBy();
/** is this sc the one that will be the one that will make the cell to print out all its data
* or is this a sc that will just print out the cell ref?
*/
- bool makePrintData(const StructuralComponent *);
+ bool makePrintData ( const StructuralComponent * );
/** set the index.
* The index <b>have to be unique</b> otherwise this method
@@ -98,17 +103,17 @@ public:
* The sub-classes method will check that this index is not in use.
* @return true only if the index of the structure was changed
*/
- virtual bool setIndex(const unsigned int);
+ virtual bool setIndex ( const unsigned int );
/** compute the normal of the facet
* Warning : Only available for QUAD and TRIANGLE type cells
*/
- double* normal();
+ double * normal();
/// Return a new structural component directly representing the Cell as a list of quad faces (when possible)
StructuralComponent * getQuadFaces();
- /// Return a new structural component directly representing the Cell as a list of quad faces (when possible)
+ /// Return a new structural component directly representing the Cell as a list of triangular faces (when possible)
StructuralComponent * getTriangleFaces();
///Compute the surface of the cell
@@ -117,19 +122,46 @@ public:
/// Compute the volume of the cell
double volume();
+ /**
+ * Compute the volume of a triangle with the origin of the coordinate system.
+ * If the triangle is A,B,C it computes the volume of the tetrahedron OABC.
+ * @see Zhang, C., and Chen, T., Efficient feature extraction for 2D/3D objects in mesh representation
+ *
+ * @param p1 position of Triangle Atom
+ * @param p2 position of Triangle Atom
+ * @param p3 position of Triangle Atom
+ *
+ * @return double a signed volume
+ */
+ double signedVolumeTriangle(double p1[3], double p2[3], double p3[3]);
+ /// Get the direct parent structural that own this cell
+ const StructuralComponent * getParentSC() {
+ return this->parentSC;
+ }
+
+ /// add a particular StructuralComponent in the list (and set parentSC if null)
+ virtual void addStructuralComponent ( StructuralComponent * );
private:
- /// unique number (used to generate unique index for atoms if not given at the instanciation)
- static unsigned int nextUniqueIndex;
+ /// Keep a reference to the direct parent structural component
+ StructuralComponent * parentSC;
};
-inline bool Cell::isInstanceOf(const char *className) const {
- return (std::string(className) == std::string("Cell"));
+// ------- INLINE -----------
+inline bool Cell::isInstanceOf ( const char * className ) const {
+ return ( std::string ( className ) == std::string ( "Cell" ) );
}
-inline StructuralComponent::ComposedBy Cell::composedBy() {
+inline Cell::ComposedBy Cell::composedBy() {
return StructuralComponent::ATOMS;
}
+
+inline void Cell::addStructuralComponent(StructuralComponent * sc) {
+ Structure::addStructuralComponent(sc);
+ if (!parentSC)
+ parentSC = sc;
+}
+
#endif //CELL_H
diff --git a/modeling/libraries/pml/CellProperties.cpp b/modeling/libraries/pml/CellProperties.cpp
new file mode 100644
index 0000000..6c7b0be
--- /dev/null
+++ b/modeling/libraries/pml/CellProperties.cpp
@@ -0,0 +1,130 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include "CellProperties.h"
+
+// pmlschema includes
+#include <CellProperties.hxx>
+
+//----------------------- Class member init -----------------------
+void CellProperties::resetUniqueIndex() {
+ CellProperties::maxUniqueIndex = 0;
+}
+
+CellProperties::CellProperties(PhysicalModel * p, const StructureProperties::GeometricType t, physicalModel::CellProperties xmlCellProp) : StructureProperties(p, t) {
+
+ // index attribute
+ if (xmlCellProp.index().present()) {
+ index = xmlCellProp.index().get();
+ } else {
+ index = maxUniqueIndex++;
+ }
+
+ // name attribute
+ if (xmlCellProp.name().present()) {
+ setName(xmlCellProp.name().get());
+ }
+
+ // unknow attributes
+ xmlToFields(xmlCellProp.any_attribute());
+}
+
+// initializing the static class member
+unsigned int CellProperties::maxUniqueIndex = 0;
+
+//----------------------- Constructors -----------------------
+CellProperties::CellProperties(PhysicalModel * p, const StructureProperties::GeometricType t) : StructureProperties(p, t) {
+ index = maxUniqueIndex++;
+}
+
+CellProperties::CellProperties(PhysicalModel * p, const StructureProperties::GeometricType t, const unsigned int ind) : StructureProperties(p, t) {
+ index = ind;
+
+ if (ind >= maxUniqueIndex) {
+ maxUniqueIndex = ind + 1;
+ }
+}
+
+// --------------- xmlPrint ---------------
+void CellProperties::xmlPrint(std::ostream & o) {
+
+ // beginning of the atom properties
+ o << "<cellProperties index=\"" << index << "\"";
+ // print the type
+
+ switch (getType()) {
+
+ case StructureProperties::TETRAHEDRON:
+ o << " type=\"TETRAHEDRON\"";
+ break;
+
+ case StructureProperties::HEXAHEDRON:
+ o << " type=\"HEXAHEDRON\"";
+ break;
+
+ case StructureProperties::WEDGE:
+ o << " type=\"WEDGE\"";
+ break;
+
+ case StructureProperties::PYRAMID:
+ o << " type=\"PYRAMID\"";
+ break;
+
+ case StructureProperties::POLY_LINE:
+ o << " type=\"POLY_LINE\"";
+ break;
+
+ case StructureProperties::POLY_VERTEX:
+ o << " type=\"POLY_VERTEX\"";
+ break;
+
+ case StructureProperties::LINE:
+ o << " type=\"LINE\"";
+ break;
+
+ case StructureProperties::TRIANGLE:
+ o << " type=\"TRIANGLE\"";
+ break;
+
+ case StructureProperties::QUAD:
+ o << " type=\"QUAD\"";
+ break;
+
+ default:
+ o << " type=\"???\"";
+ break;
+ }
+
+ if (getName() != "") {
+ o << " name=\"" << getName().c_str() << "\"";
+ }
+
+
+ for (std::map<std::string, std::string>::iterator it = fields.begin(); it != fields.end() ; it++) {
+ o << " " << (*it).first << "=\"" << (*it).second << "\"";
+ }
+
+ // end of the properties
+ o << "/>" << std::endl;
+}
diff --git a/modeling/libraries/pml/CellProperties.h b/modeling/libraries/pml/CellProperties.h
new file mode 100644
index 0000000..f904890
--- /dev/null
+++ b/modeling/libraries/pml/CellProperties.h
@@ -0,0 +1,83 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef CELLPROPERTIES_H
+#define CELLPROPERTIES_H
+
+#include "StructureProperties.h"
+
+#include <memory>
+
+// pml schema forward declarations
+namespace physicalModel {
+class CellProperties;
+}
+/**
+ * @ingroup group_cepmodeling_libraries_pml
+ *
+ * @brief
+ * Describes and manages the properties attached to cells.
+ *
+ **/
+class CellProperties : public StructureProperties {
+public:
+ /** Default constructor : generate an unique index
+ * @param myPM the physical model the atom belongs to
+ * @param t the type of the cell
+ */
+ CellProperties ( PhysicalModel * myPM, const StructureProperties::GeometricType t );
+
+ /** constructor from xml node: try to read and get the properties from xml
+ * @param myPM the physical model the atom belongs to
+ * @param t the type of the cell
+ * @param n the xml node to read to get the information
+ */
+ CellProperties ( PhysicalModel * myPM, const StructureProperties::GeometricType t, physicalModel::CellProperties xmlCellProp );
+
+ /** Use this constructor when you specifically want to set the index
+ * @param myPM the physical model the atom belongs to
+ * @param t the type of the cell
+ * @param ind an unique index
+ */
+ CellProperties ( PhysicalModel * myPM, const StructureProperties::GeometricType t, const unsigned int ind );
+
+ /// the destructor...
+ virtual ~CellProperties() {};
+
+ /** print to an output stream in "pseaudo" XML format.
+ */
+ virtual void xmlPrint ( std::ostream & );
+
+ /** Reinitialize the unique index to zero (usually that what you want to do when you
+ * start to load a new PhysicalModel
+ */
+ static void resetUniqueIndex();
+
+private:
+ /// unique number (used to generate unique index for cells if not given at the instanciation)
+ static unsigned int maxUniqueIndex;
+
+};
+#endif // CELLPROPERTIES_H
diff --git a/modeling/libraries/pml/Component.cpp b/modeling/libraries/pml/Component.cpp
index 291d865..2ddfc13 100644
--- a/modeling/libraries/pml/Component.cpp
+++ b/modeling/libraries/pml/Component.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/Component.h b/modeling/libraries/pml/Component.h
index 53488c9..8242301 100644
--- a/modeling/libraries/pml/Component.h
+++ b/modeling/libraries/pml/Component.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/INSTALL b/modeling/libraries/pml/INSTALL
deleted file mode 100644
index f79c254..0000000
--- a/modeling/libraries/pml/INSTALL
+++ /dev/null
@@ -1,19 +0,0 @@
-Installation instructions
--------------------------
-
-If you are compiling the PML library in the camiTK framework, please make
-sure that this directory is inside the camiTK directory (and/or the
-camiTK_DIR is defined properly)
-
-If you are compiling the PML library as a standalone or outside the
-camiTK framework, you have to set the camiTK_DIR variable properly in
-CMakeLists.txt of this directory.
-It is designed to be the installation directory, i.e. the
-directory camiTK_DIR have to have the following subdirectories:
-- $camiTK_DIR/lib where the lib will be created
-- $camiTK_DIR/bin where any binaries will be created
-- $camiTK_DIR/include where the include file will be copied
- when make install is called.
-
-If camiTK_DIR is not defined, it is automatically (or
-shoudl be anyway!) set to the build dir.
diff --git a/modeling/libraries/pml/MultiComponent.cpp b/modeling/libraries/pml/MultiComponent.cpp
index a6cf05f..5ae4551 100644
--- a/modeling/libraries/pml/MultiComponent.cpp
+++ b/modeling/libraries/pml/MultiComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/MultiComponent.h b/modeling/libraries/pml/MultiComponent.h
index 1abb79c..6298f03 100644
--- a/modeling/libraries/pml/MultiComponent.h
+++ b/modeling/libraries/pml/MultiComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -50,9 +50,15 @@ public:
/// delete all the subcomponents (call the deleteAllSubComponents method)
~MultiComponent();
+ /// return the number of subcomponents
unsigned int getNumberOfSubComponents() const;
+
+ /// get a subcomponent by its order number (index in the list of subcomponents)
Component * getSubComponent(const unsigned int) const;
+
+ /// add a component in the list of subcomponents (and set the isExclusive flag accordingly to the state of this MultiComponent)
void addSubComponent(Component *);
+
/**
* Remove a component from the list.
* Becareful: this method DOES NOT delete the object and/or free the memory.
@@ -116,6 +122,8 @@ inline void MultiComponent::addSubComponent(Component * c) {
components.push_back(c);
// add this in the list of c's composing component
c->addParentMultiComponent(this);
+ // set the isExclusive flag accordingly
+ c->setExclusive(isExclusive());
}
inline void MultiComponent::removeSubComponent(Component *c) {
std::vector <Component *>::iterator it = std::find(components.begin(), components.end(), c);
diff --git a/modeling/libraries/pml/PMLAbortException.h b/modeling/libraries/pml/PMLAbortException.h
index 777a41c..2f2467b 100644
--- a/modeling/libraries/pml/PMLAbortException.h
+++ b/modeling/libraries/pml/PMLAbortException.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/PMLTransform.cpp b/modeling/libraries/pml/PMLTransform.cpp
index 6482269..4efa42f 100644
--- a/modeling/libraries/pml/PMLTransform.cpp
+++ b/modeling/libraries/pml/PMLTransform.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/PMLTransform.h b/modeling/libraries/pml/PMLTransform.h
index 72fb677..0aa3018 100644
--- a/modeling/libraries/pml/PMLTransform.h
+++ b/modeling/libraries/pml/PMLTransform.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/PhysicalModel.cpp b/modeling/libraries/pml/PhysicalModel.cpp
index 373007f..eda2957 100644
--- a/modeling/libraries/pml/PhysicalModel.cpp
+++ b/modeling/libraries/pml/PhysicalModel.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,15 +23,12 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-// Reading XML
-#include <libxml/parser.h>
-#include <libxml/tree.h>
-
#include <stdexcept>
#include <iostream>
#include <fstream>
#include <iomanip>
+
// Other includes
#include "PhysicalModel.h"
//#include "Object3D.h"
@@ -43,6 +40,16 @@
#include "PhysicalModelVersion.h"
+// pmlschema stuffs
+#include <PhysicalModel.hxx>
+#include <StructuralComponent.hxx>
+#include <InformativeComponent.hxx>
+#include <Atoms.hxx>
+#include <MultiComponent.hxx>
+
+// XercesC stuffs
+#include <xercesc/util/PlatformUtils.hpp>
+
//--------------- Constructor/Destructor ------------------------------
PhysicalModel::PhysicalModel() {
init();
@@ -63,7 +70,7 @@ PhysicalModel::~PhysicalModel() {
// --------------- init ---------------
void PhysicalModel::init() {
- properties = new Properties(this);
+ properties = new Properties ( this );
positionPtr = NULL;
exclusiveComponents = NULL;
informativeComponents = NULL;
@@ -75,27 +82,31 @@ void PhysicalModel::init() {
// --------------- setProgress ---------------
void PhysicalModel::setProgress ( const float donePercentage ) {
- if ( setProgressFunction != NULL )
+ if ( setProgressFunction != NULL ) {
setProgressFunction ( donePercentage );
+ }
}
// --------------- clear ---------------
void PhysicalModel::clear() {
- if ( informativeComponents )
+ if ( informativeComponents ) {
delete informativeComponents;
+ }
informativeComponents = NULL;
- if ( exclusiveComponents )
+ if ( exclusiveComponents ) {
delete exclusiveComponents;
+ }
exclusiveComponents = NULL;
// delete all atoms at the end (otherwise deletion of cells in informative
// or exclusive components will try to tell already deleted (unaccessible) atoms
// that some of their SC is to be removed from their list
- if ( atoms )
+ if ( atoms ) {
delete atoms;
+ }
atoms = NULL;
@@ -119,11 +130,13 @@ void PhysicalModel::clear() {
unsigned int PhysicalModel::getNumberOfCells() const {
unsigned int nrOfCells = 0;
- if ( exclusiveComponents )
+ if ( exclusiveComponents ) {
nrOfCells += exclusiveComponents->getNumberOfCells();
+ }
- if ( informativeComponents )
+ if ( informativeComponents ) {
nrOfCells += informativeComponents->getNumberOfCells();
+ }
return nrOfCells;
}
@@ -133,46 +146,51 @@ double * PhysicalModel::getPositionPointer() const {
return positionPtr;
}
-double * PhysicalModel::getPositionPointer (const Atom *a ) const {
+double * PhysicalModel::getPositionPointer ( const Atom *a ) const {
unsigned int idInAtom = a->getIndexInAtoms();
- if (idInAtom>=0)
+ if ( idInAtom>=0 )
// * 3 because the position are stored consequently, using a double for x, y and z (3 double then!)
+ {
return positionPtr + idInAtom*3;
- else {
+ } else {
// look for atom #index in the atoms
Atom *ai = NULL;
unsigned int i = 0;
- while ( i<atoms->getNumberOfStructures() && (ai != a)) {
+ while ( i<atoms->getNumberOfStructures() && ( ai != a ) ) {
ai = dynamic_cast<Atom *> ( atoms->getStructure ( i ) );
i++;
}
if ( ai == a )
// the memory allocated to atom #index is (i-1) * 3 (because the position are stored consequently, using a double for x, y and z
+ {
return positionPtr + ( i-1 ) *3;
- else
+ } else {
return NULL;
+ }
}
}
-double * PhysicalModel::getPositionPointer(const unsigned int index) const {
+double * PhysicalModel::getPositionPointer ( const unsigned int index ) const {
// look for atom #index in the atoms
bool found = false;
unsigned int i = 0;
- while (i<atoms->getNumberOfStructures() && !found) {
- Atom *a = dynamic_cast<Atom *>(atoms->getStructure(i));
- found = (a->getIndex() == index);
+ while ( i<atoms->getNumberOfStructures() && !found ) {
+ Atom *a = dynamic_cast<Atom *> ( atoms->getStructure ( i ) );
+ found = ( a->getIndex() == index );
i++;
}
- if (found)
+ if ( found )
// the memory allocated to atom #index is (i-1) * 3 (because the position are stored consequently, using a double for x, y and z
- return positionPtr + (i-1)*3;
- else
+ {
+ return positionPtr + ( i-1 ) *3;
+ } else {
return NULL;
+ }
}
// --------------- optimizeIndexes ---------------
@@ -184,9 +202,9 @@ void PhysicalModel::optimizeIndexes ( MultiComponent * mc, unsigned int * index
for ( unsigned int i = 0; i < mc->getNumberOfSubComponents(); i++ ) {
c = mc->getSubComponent ( i );
- if ( c->isInstanceOf ( "MultiComponent" ) )
+ if ( c->isInstanceOf ( "MultiComponent" ) ) {
optimizeIndexes ( ( MultiComponent * ) c, index );
- else {
+ } else {
if ( c->isInstanceOf ( "StructuralComponent" ) ) {
sc = ( StructuralComponent * ) c;
// check all cells
@@ -214,8 +232,9 @@ void PhysicalModel::optimizeIndexes() {
// first: the atoms
if ( atoms ) {
- for ( unsigned int i = 0; i < atoms->getNumberOfStructures(); i++ )
+ for ( unsigned int i = 0; i < atoms->getNumberOfStructures(); i++ ) {
( ( Atom * ) atoms->getStructure ( i ) )->setIndex ( i );
+ }
}
// then the cells
@@ -242,26 +261,33 @@ void PhysicalModel::xmlPrint ( std::ostream &o, bool opt ) {
// print out the whole thing
o << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" << std::endl;
- o << "<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) --> " << std::endl;
+ o << "<!-- physical model (PML) is a generic representation for 3D physical model." << std::endl
+ << " PML supports not continous indexes and multiple non-exclusive labelling." << std::endl
+ << " --> " << std::endl;
o << "<physicalModel";
- if ( getName() != "" )
- o << " name=\"" << getName().c_str() << "\"";
+ if ( getName() != "" ) {
+ o << " name=\"" << getName().c_str() << "\"";
+ }
- if ( atoms )
- o << " nrOfAtoms=\"" << atoms->getNumberOfStructures() << "\"" << std::endl;
+ if ( atoms ) {
+ o << " nrOfAtoms=\"" << atoms->getNumberOfStructures() << "\"" << std::endl;
+ }
- if ( exclusiveComponents )
- o << " nrOfExclusiveComponents=\"" << exclusiveComponents->getNumberOfSubComponents() << "\"" << std::endl;
+ if ( exclusiveComponents ) {
+ o << " nrOfExclusiveComponents=\"" << exclusiveComponents->getNumberOfSubComponents() << "\"" << std::endl;
+ }
- if ( informativeComponents )
- o << " nrOfInformativeComponents=\"" << informativeComponents->getNumberOfSubComponents() << "\"" << std::endl;
+ if ( informativeComponents ) {
+ o << " nrOfInformativeComponents=\"" << informativeComponents->getNumberOfSubComponents() << "\"" << std::endl;
+ }
- o << " nrOfCells=\"" << getNumberOfCells() << "\"" << std::endl;
+ o << " nrOfCells=\"" << getNumberOfCells() << "\"" << std::endl;
- for(unsigned int i = 0; i<properties->numberOfFields(); i++)
- o << " " << properties->getField(i) <<"=\"" << properties->getString(properties->getField(i)) << "\"" << std::endl;
+ for ( unsigned int i = 0; i<properties->numberOfFields(); i++ ) {
+ o << " " << properties->getField ( i ) <<"=\"" << properties->getString ( properties->getField ( i ) ) << "\"" << std::endl;
+ }
o << ">" << std::endl;
@@ -269,8 +295,9 @@ void PhysicalModel::xmlPrint ( std::ostream &o, bool opt ) {
o << "<atoms>" << std::endl;
- if ( atoms )
+ if ( atoms ) {
atoms->xmlPrint ( o );
+ }
o << "</atoms>" << std::endl;
@@ -278,19 +305,18 @@ void PhysicalModel::xmlPrint ( std::ostream &o, bool opt ) {
o << "<exclusiveComponents>" << std::endl;
- if ( exclusiveComponents )
+ if ( exclusiveComponents ) {
exclusiveComponents->xmlPrint ( o );
+ }
o << "</exclusiveComponents>" << std::endl;
- o << "<!-- list of informative components : -->" << std::endl;
-
- o << "<informativeComponents>" << std::endl;
-
- if ( informativeComponents )
+ if ( informativeComponents ) {
+ o << "<!-- list of informative components : -->" << std::endl;
+ o << "<informativeComponents>" << std::endl;
informativeComponents->xmlPrint ( o );
-
- o << "</informativeComponents>" << std::endl;
+ o << "</informativeComponents>" << std::endl;
+ }
o << "</physicalModel>" << std::endl;
@@ -299,231 +325,126 @@ void PhysicalModel::xmlPrint ( std::ostream &o, bool opt ) {
}
// --------------- xmlRead ---------------
-void PhysicalModel::xmlRead ( const char * n ) {
+void PhysicalModel::xmlRead ( const char * filename ) throw ( PMLAbortException ) {
// clear all the current data
clear();
- // this initialize the library and check potential ABI mismatches
- // between the version it was compiled for and the actual shared
- // library used.
- LIBXML_TEST_VERSION
-
// Set the locale to C for using dot as decimal point dispite locale
// Set utf8 for output to enforce using utf8 strings.
- char * statusOk = setlocale(LC_CTYPE, "C.UTF-8");
- if (statusOk!=NULL)
- statusOk = setlocale(LC_NUMERIC, "C.UTF-8");
- if (statusOk!=NULL)
- statusOk = setlocale(LC_TIME, "C.UTF-8");
+ char * statusOk = setlocale ( LC_CTYPE, "C.UTF-8" );
+ if ( statusOk!=NULL ) {
+ statusOk = setlocale ( LC_NUMERIC, "C.UTF-8" );
+ }
+ if ( statusOk!=NULL ) {
+ statusOk = setlocale ( LC_TIME, "C.UTF-8" );
+ }
// french is: "fr_FR.UTF8"
- if (!statusOk) {
+ if ( !statusOk ) {
// try without UTF-8
- statusOk = setlocale(LC_CTYPE,"C");
- if (statusOk!=NULL)
- statusOk = setlocale(LC_NUMERIC, "C");
- if (statusOk!=NULL)
- statusOk = setlocale(LC_TIME, "C");
- if (statusOk==NULL) {
+ statusOk = setlocale ( LC_CTYPE,"C" );
+ if ( statusOk!=NULL ) {
+ statusOk = setlocale ( LC_NUMERIC, "C" );
+ }
+ if ( statusOk!=NULL ) {
+ statusOk = setlocale ( LC_TIME, "C" );
+ }
+ if ( statusOk==NULL ) {
std::cerr << "Could not set the locale to C. This is mandatory to enforce using dot as decimal separator (platform independency)." << std::endl;
std::cerr << "This can cause a lot of trouble for XML I/O... Beware of decimal dots..." << std::endl;
}
}
- // the resulting document tree
- xmlDocPtr doc;
- //the pointer to the root node of the document
- xmlNodePtr root;
-
- doc = xmlParseFile ( n );
-
- if ( doc == NULL ) {
- std::cerr << "Failed to open " << n << std::endl;
- return ;
- }
-
- root = xmlDocGetRootElement ( doc );
-
- if ( root == NULL ) {
- std::cerr << "empty document" << std::endl;
- xmlFreeDoc ( doc );
- return ;
- }
+ // Initialize manually the XercesC++ runtime, required by using wildcards in XSD schema.
+ // Implies that we pass the xml_shema::flags::dont_initialize to any serialization method of the pmlschema library
+ // as we already have initialized the XercesC runtime manually.
+ xercesc::XMLPlatformUtils::Initialize ();
+
+ // Use XSD with the pmlschema library to read the loads described in the xml file.
+ try {
+ std::auto_ptr<physicalModel::PhysicalModel> root = physicalModel::physicalModel ( filename, xml_schema::flags::dont_initialize | xml_schema::flags::dont_validate );
+
+ // get the basename
+ std::string basename = filename;
+ // remove the path
+ unsigned lastSeparator = basename.find_last_of ( "/\\" ); // works for unix and windows
+ if ( lastSeparator != std::string::npos ) {
+ basename = basename.substr ( lastSeparator+1 );
+ }
+ // remove the extension
+ lastSeparator = basename.find_last_of ( "." );
+ if ( lastSeparator != std::string::npos ) {
+ basename.erase ( lastSeparator );
+ }
- //build the physicalModel, parsing the xml tree
- if ( !parseTree ( root ) ) {
- std::cerr << "failed to read the xml tree" << std::endl;
- xmlFreeDoc ( doc );
- return ;
+ // Parse the xml content
+ this->parseTree ( root, basename );
+ } catch ( const xml_schema::exception& e ) {
+ std::ostringstream os;
+ os << "Library-pml Error: In PhysicalModel::xmlRead(..): Failed to read the xml file, reason:" << std::endl;
+ os << e << std::endl;
+ std::cerr << os.str() << std::endl;
+ throw PMLAbortException ( os.str () );
}
- //free the xml
- xmlFreeDoc ( doc );
-
- xmlCleanupParser();
-
- xmlMemoryDump();
-
+ // Terminate the XercesC++ runtime manually
+ xercesc::XMLPlatformUtils::Terminate ();
}
// ------------------ parse tree ------------------
-bool PhysicalModel::parseTree ( xmlNodePtr root ) {
- if ( xmlStrcmp ( root->name, ( const xmlChar* ) "physicalModel" ) ) {
- std::cerr << "failed to read the physicalModel" << std::endl;
- return false;
- }
-
- // read the physicalModel name
- xmlChar *pname = xmlGetProp ( root, ( const xmlChar* ) "name" );
-
- std::string name = "";
- if ( pname )
- name = (char *) pname;
-
- properties = new Properties(this, name );
-
- xmlFree ( pname );
-
- // parse the physicalModel options (e.g. the physicalModel node attributes) that holds specific proprerties
- xmlAttr * attrs = root->properties;
-
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));
-
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
-
- if (pname && xmlStrcmp(pname, (xmlChar*)"name")
- && xmlStrcmp(pname, (xmlChar*)"nrOfAtoms")
- && xmlStrcmp(pname, (xmlChar*)"nrOfExclusiveComponents")
- && xmlStrcmp(pname, (xmlChar*)"nrOfInformativeComponents")
- && xmlStrcmp(pname, (xmlChar*)"nrOfCells")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- properties->domToFields(unknownAttrs);
-
- xmlFree(unknownAttrs);
+bool PhysicalModel::parseTree ( std::auto_ptr<physicalModel::PhysicalModel> root , std::string defaultName ) {
- //get the pointer on atoms
- xmlNodePtr atomsPtr = root->xmlChildrenNode;
-
- while ( atomsPtr && xmlStrcmp ( atomsPtr->name, ( const xmlChar* ) "atoms" ) )
- atomsPtr = atomsPtr->next ;
-
- if ( !atomsPtr || xmlStrcmp ( atomsPtr->name, ( const xmlChar* ) "atoms" ) ) {
- std::cerr << "failed to read the atoms" << std::endl;
- return false;
+ // Pml file have a name which can be an empty string
+ std::string name;
+ if ( root->name().present() ) {
+ name = root->name().get();
} else {
- // if we found the pointer on atoms, parse the sub tree and build the atoms
- parseAtoms ( atomsPtr );
- // allocate the big memory bunch
- positionPtr = new double[3*atoms->getNumberOfStructures() ];
- // assign all position memory
- double * currentPositionPtr = positionPtr;
-
- for ( unsigned int i=0; i<atoms->getNumberOfStructures(); i++ ) {
- Atom *a = dynamic_cast<Atom *> ( atoms->getStructure ( i ) );
- a->getProperties()->setPositionPointer ( currentPositionPtr );
- // next position => jump 3 double memory space
- currentPositionPtr = currentPositionPtr + 3;
- }
+ name = defaultName;
}
- //get the pointer on exclusiveComponents
- xmlNodePtr exCompPtr = atomsPtr->next;
-
- while ( exCompPtr && xmlStrcmp ( exCompPtr->name, ( const xmlChar* ) "exclusiveComponents" ) )
- exCompPtr = exCompPtr->next ;
-
- if ( !exCompPtr || xmlStrcmp ( exCompPtr->name, ( const xmlChar* ) "exclusiveComponents" ) ) {
- std::cerr << "failed to read the exclusiveComponents" << std::endl;
- return false;
- } else {
- //if we found the pointer on exclusiveComponents, parse the sub tree and build the exclusiveComponents
- //exclusiveComponents = new MultiComponent(this);
- xmlNodePtr mcNode = exCompPtr->children;
- //get the pointer on the multicomponent child
-
- while ( mcNode && xmlStrcmp ( mcNode->name, ( const xmlChar* ) "multiComponent" ) )
- mcNode = mcNode->next ;
-
- if ( !mcNode ) {
- std::cerr << "error : no exclusive components found." << std::endl;
- return false;
- }
-
- MultiComponent * mc = new MultiComponent ( this );
-
- xmlChar *pname = xmlGetProp ( mcNode, ( const xmlChar* ) "name" );
-
- if ( pname )
- mc->setName ( std::string ( ( char* ) pname ) );
+ this->properties = new Properties ( this, name );
- xmlFree ( pname );
+ // add additionnal attributes as properties
+ physicalModel::PhysicalModel::any_attribute_set unknownAttrs = root->any_attribute();
+ this->properties->xmlToFields ( unknownAttrs );
- // parse extra properties to fill the property fields map
- xmlAttr * attrs = mcNode->properties;
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));;
+ // Parse the atoms
+ parseAtoms ( root->atoms() );
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
+ // allocate the big memory bunch
+ positionPtr = new double[3*atoms->getNumberOfStructures()];
+ // assign all position memory
+ double * currentPositionPtr = positionPtr;
- if (pname && xmlStrcmp(pname, (xmlChar*)"name")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- mc->getProperties()->domToFields(unknownAttrs);
- xmlFreeNode(unknownAttrs);
-
- parseComponents ( mcNode, mc, true );
-
- setExclusiveComponents ( mc );
+ for ( unsigned int i=0; i<atoms->getNumberOfStructures(); i++ ) {
+ Atom *a = dynamic_cast<Atom *> ( atoms->getStructure ( i ) );
+ a->getProperties()->setPositionPointer ( currentPositionPtr );
+ // next position => jump 3 double memory space
+ currentPositionPtr = currentPositionPtr + 3;
}
- //get the pointer on informativeComponents
- xmlNodePtr infCompPtr = exCompPtr->next;
-
- while ( infCompPtr && xmlStrcmp ( infCompPtr->name, ( const xmlChar* ) "informativeComponents" ) )
- infCompPtr = infCompPtr->next ;
-
- if ( !infCompPtr || xmlStrcmp ( infCompPtr->name, ( const xmlChar* ) "informativeComponents" ) ) {
- std::cerr << "failed to read the informativeComponents" << std::endl;
- return false;
- } else {
- //if we found the pointer on informativeComponents, parse the sub tree and build the informativeComponents
- informativeComponents = new MultiComponent ( this );
- xmlNodePtr mcNode = infCompPtr->children;
- //get the pointer on the multicomponent child
-
- while ( mcNode && xmlStrcmp ( mcNode->name, ( const xmlChar* ) "multiComponent" ) )
- mcNode = mcNode->next ;
-
- if ( !mcNode ) {
- //if no child found, there is no informative components
- delete informativeComponents;
- informativeComponents = NULL;
- return true;
- }
-
- xmlChar *pname = xmlGetProp ( mcNode, ( const xmlChar* ) "name" );
-
- if ( pname )
- informativeComponents->setName ( std::string ( ( char* ) pname ) );
-
- xmlFree ( pname );
-
- parseComponents ( mcNode, informativeComponents, false );
+ // Parse the exclusive components
+ physicalModel::ExclusiveComponent ecs = root->exclusiveComponents();
+ physicalModel::MultiComponent xmlExclusiveMC = ecs.multiComponent();
+ // Get the top level multicomponent node (with name + unkown attributes)
+ MultiComponent* exclusiveMC = new MultiComponent ( this );
+ // recursively build the tree of exclusive components
+ parseComponents ( xmlExclusiveMC, exclusiveMC, true );
+ // Add it to the structure
+ this->setExclusiveComponents ( exclusiveMC );
+
+ // Parse the informative components
+ if ( root->informativeComponents().present() ) {
+ physicalModel::InformativeComponent ics = root->informativeComponents().get();
+ physicalModel::MultiComponent xmlInformativeMC = ics.multiComponent();
+ // Get the top level multicomponent node (with name + unkown attributes)
+ MultiComponent* informativeMC = new MultiComponent ( this );
+ // recursively build the tree of informative components
+ parseComponents ( xmlInformativeMC, informativeMC, false );
+
+ // Add it to the structure
+ this->setInformativeComponents ( informativeMC );
}
return true;
@@ -531,198 +452,89 @@ bool PhysicalModel::parseTree ( xmlNodePtr root ) {
// ------------------ parse atoms ------------------
-bool PhysicalModel::parseAtoms ( xmlNodePtr atomsRoot ) {
- //parse the content of atoms
- for ( xmlNodePtr child = atomsRoot->xmlChildrenNode; child != NULL; child = child->next ) {
- //get the pointer on structuralComponent
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "structuralComponent" ) ) {
- StructuralComponent * sc = new StructuralComponent ( this, child );
- //parse the content of structuralComponent
-
- for ( xmlNodePtr SCchild = child->xmlChildrenNode; SCchild != NULL; SCchild = SCchild->next ) {
- //get the pointer on nrOfStructures
- if ( !xmlStrcmp ( SCchild->name, ( const xmlChar* ) "nrOfValues" ) ) {
- xmlChar * prop = xmlGetProp ( SCchild, ( xmlChar* ) ( "value" ) );
- unsigned int val = atoi ( ( char* ) prop );
- sc->plannedNumberOfStructures ( val );
- xmlFree ( prop );
- }
+bool PhysicalModel::parseAtoms ( physicalModel::PhysicalModel::atoms_type atomsRoot ) {
- //get the pointers on atom
- if ( !xmlStrcmp ( SCchild->name, ( const xmlChar* ) "atom" ) ) {
- Atom * newatom = new Atom ( this, SCchild, sc->getNumberOfStructures() );
- sc->addStructure ( newatom );
- }
- }
+ // Parse the content of the structuralComponent
+ physicalModel::Atoms:: structuralComponent_type xmlSC = atomsRoot.structuralComponent();
+ StructuralComponent* sc = new StructuralComponent ( this, xmlSC );
- this->setAtoms ( sc );
- }
+ // Parse the number of structures
+ if ( xmlSC.nrOfStructures().present() ) {
+ sc->plannedNumberOfStructures ( xmlSC.nrOfStructures().get().value() );
+ }
+
+ // Parse the atoms
+ unsigned int atomOrderNumber = 0; // index in the atoms SC
+ physicalModel::StructuralComponent::atom_sequence &atoms = xmlSC.atom();
+ for ( physicalModel::StructuralComponent::atom_iterator atomIt ( atoms.begin() ); atomIt != atoms.end(); atomIt++ ) {
+ physicalModel::Atom& currentAtom = *atomIt;
+ Atom *newAtom = new Atom ( this, currentAtom, atomOrderNumber );
+ atomOrderNumber++;
+ sc->addStructure ( newAtom );
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "atom" ) ) {
- Atom * newatom = new Atom ( this, child );
- this->addAtom ( newatom );
- }
}
+ // Identify the parsed structural component as the list of atoms
+ this->setAtoms ( sc );
return true;
}
// ------------------ parse Components ------------------
-bool PhysicalModel::parseComponents ( xmlNodePtr root, Component * father, bool isExclusive ) {
- for ( xmlNodePtr child = root->xmlChildrenNode; child != NULL; child = child->next ) {
- //read and build a MultiComponent
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "multiComponent" ) ) {
- MultiComponent * mc = new MultiComponent ( this );
- mc->setExclusive ( isExclusive );
-
- // parse the name
- xmlChar *pname = xmlGetProp ( child, ( const xmlChar* ) "name" );
-
- if ( pname )
- mc->setName ( std::string ( ( char* ) pname ) );
-
- xmlFree ( pname );
-
- // parse extra properties to fill the property fields map
- xmlAttr * attrs = child->properties;
- xmlNodePtr unknownAttrs = xmlNewNode(NULL, (xmlChar*)("unknownAttrs"));;
-
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
-
- if (pname && xmlStrcmp(pname, (xmlChar*)"name")) {
- xmlSetProp(unknownAttrs, pname, pval);
- }
-
- attrs = attrs->next;
- }
-
- //transform the unknown attributes to a property field map
- mc->getProperties()->domToFields(unknownAttrs);
- xmlFreeNode(unknownAttrs);
-
- ( ( MultiComponent* ) father )->addSubComponent ( mc );
-
- //parse the multicomponent subtree
- parseComponents ( child, mc, isExclusive );
- }
-
- //read and build a structuralComponent
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "structuralComponent" ) ) {
- StructuralComponent * sc = new StructuralComponent ( this, child );
- sc->setExclusive ( isExclusive );
-
- xmlNodePtr SCchild = child->xmlChildrenNode;
-
- while ( SCchild != NULL && xmlStrcmp ( SCchild->name, ( const xmlChar* ) "nrOfValues" ) )
- SCchild = SCchild->next;
-
- if ( SCchild ) {
- xmlChar * prop = xmlGetProp ( SCchild, ( xmlChar* ) ( "value" ) );
- unsigned int val = atoi ( ( char* ) prop );
- sc->plannedNumberOfStructures ( val );
- xmlFree ( prop );
- }
-
- ( ( MultiComponent* ) father )->addSubComponent ( sc );
-
- //parse the structuralcomponent subtree
-
- if ( !parseComponents ( child, sc, isExclusive ) ) {
- std::cerr << ", in structural component \"" << sc->getName() << "\"" << std::endl;
- return false;
- }
- }
-
- //read and build a cell
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "cell" ) ) {
- StructureProperties::GeometricType gtype = StructureProperties::INVALID;
- //find properties node
- xmlNodePtr cchild = child->xmlChildrenNode;
-
- while ( cchild != NULL && xmlStrcmp ( cchild->name, ( const xmlChar* ) "cellProperties" ) )
- cchild = cchild->next;
-
- if ( cchild ) {
- //search the type attribute
- xmlChar *ptype = xmlGetProp ( cchild, ( const xmlChar* ) "type" );
-
- if ( ptype ) {
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "TRIANGLE" ) )
- gtype = StructureProperties::TRIANGLE;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "QUAD" ) )
- gtype = StructureProperties::QUAD;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "TETRAHEDRON" ) )
- gtype = StructureProperties::TETRAHEDRON;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "HEXAHEDRON" ) )
- gtype = StructureProperties::HEXAHEDRON;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "LINE" ) )
- gtype = StructureProperties::LINE;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "WEDGE" ) )
- gtype = StructureProperties::WEDGE;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "PYRAMID" ) )
- gtype = StructureProperties::PYRAMID;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "POLY_LINE" ) )
- gtype = StructureProperties::POLY_LINE;
-
- if ( !xmlStrcmp ( ptype, ( const xmlChar* ) "POLY_VERTEX" ) )
- gtype = StructureProperties::POLY_VERTEX;
-
- xmlFree ( ptype );
- }
- }
-
- Cell * c = new Cell ( this, gtype, child );
-
- c->setExclusive ( isExclusive );
+bool PhysicalModel::parseComponents ( physicalModel::MultiComponent xmlFatherMC, Component* father, bool isExclusive ) {
+
+ // Parse the name and unkown properties attribute of the main multiComponent
+ MultiComponent* fatherMC = ( MultiComponent* ) father;
+ fatherMC->setName ( xmlFatherMC.name().get() );
+ fatherMC->getProperties()->xmlToFields ( xmlFatherMC.any_attribute() );
+
+ // Recursively consider multi component children
+ physicalModel::MultiComponent::multiComponent_sequence xmlChildren = xmlFatherMC.multiComponent();
+ for ( physicalModel::MultiComponent::multiComponent_iterator MCIt = xmlChildren.begin(); MCIt != xmlChildren.end(); MCIt++ ) {
+ physicalModel::MultiComponent xml_child = ( *MCIt );
+ MultiComponent* child = new MultiComponent ( this );
+ fatherMC->addSubComponent ( child );
+ this->parseComponents ( xml_child, child, isExclusive );
+ }
- if ( cellIndexOptimized ) {
- std::GlobalIndexStructurePair pair ( c->getIndex(), c );
+ // Consider the structural component children
+ physicalModel::MultiComponent::structuralComponent_sequence xmlAllSC = xmlFatherMC.structuralComponent();
+ for ( physicalModel::MultiComponent::structuralComponent_iterator SCIt = xmlAllSC.begin(); SCIt != xmlAllSC.end(); SCIt++ ) {
+ physicalModel::StructuralComponent xmlSC = ( *SCIt );
+ StructuralComponent* sc = new StructuralComponent ( this, xmlSC );
+ sc->setExclusive ( isExclusive );
+ fatherMC->addSubComponent ( sc );
+
+ // StructuralComponent's cells
+ physicalModel::StructuralComponent::cell_sequence xmlAllCells = xmlSC.cell();
+ for ( physicalModel::StructuralComponent::cell_iterator cellIt = xmlAllCells.begin();
+ cellIt != xmlAllCells.end();
+ cellIt++ ) {
+ physicalModel::Cell xmlCell = * ( cellIt );
+ // create the cell according to its geometric type
+ Cell* cell = new Cell ( this, xmlCell, sc );
+ cell->setExclusive ( isExclusive );
+ if ( this->cellIndexOptimized ) {
+ std::GlobalIndexStructurePair pair ( cell->getIndex(), cell );
this->addGlobalIndexCellPair ( pair );
}
-
- ( ( StructuralComponent* ) father )->addStructure ( c, false );
-
- //parse the cell subtree
-
- if ( !parseComponents ( child, c, isExclusive ) ) {
- std::cerr << ", in cell #" << c->getIndex();
- return false;
- }
+ sc->addStructure ( cell, false );
}
- //find the atomRef nodes
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "atomRef" ) ) {
- xmlChar * prop = xmlGetProp ( child, ( xmlChar* ) ( "index" ) );
- unsigned int val = atoi ( ( char* ) prop );
- xmlFree ( prop );
- Atom *a = this->getAtom ( val );
-
- if ( a )
- ( ( StructuralComponent* ) father )->addStructure ( a );
- else {
- std::cerr << "error : cannot find atom ref #" << val;
- return false;
+ // StructuralComponent's atoms references
+ physicalModel::StructuralComponent::atomRef_sequence xmlAllAtomRefs = xmlSC.atomRef();
+ for ( physicalModel::StructuralComponent::atomRef_iterator atomRefIt = xmlAllAtomRefs.begin();
+ atomRefIt != xmlAllAtomRefs.end();
+ atomRefIt++ ) {
+ physicalModel::AtomRef atomRef = * ( atomRefIt );
+ // Get the atom corresponding to the reference
+ Atom* a = this->getAtom ( atomRef.index() );
+ if ( a ) {
+ sc->addStructure ( a );
+ } else {
+ std::cerr << "PhysicalModel::parseComponents: cannot find atom of ref: " << atomRef.index() << std::endl;
}
}
-
- //find the cellRef nodes
- if ( !xmlStrcmp ( child->name, ( const xmlChar* ) "cellRef" ) ) {
- xmlChar * prop = xmlGetProp ( child, ( xmlChar* ) ( "index" ) );
- unsigned int val = atoi ( ( char* ) prop );
- xmlFree ( prop );
- ( ( StructuralComponent* ) father )->addStructure ( this->getCell ( val ), false );
- }
-
}
return true;
@@ -732,13 +544,20 @@ bool PhysicalModel::parseComponents ( xmlNodePtr root, Component * father, bool
// ------------------ getComponentByName ------------------
Component * PhysicalModel::getComponentByName ( const std::string n ) {
- // look for the component in the informative and exclusive component
+ //-- look for the component in exclusive component first
Component * foundC;
foundC = exclusiveComponents->getComponentByName ( n );
- if ( !foundC && informativeComponents )
+ //-- then look in the informative components
+ if ( !foundC && informativeComponents ) {
foundC = informativeComponents->getComponentByName ( n );
-
+ }
+
+ //-- at last, just in case, look if this is not the name of the atoms SC
+ if ( !foundC && getAtoms()->getName() == n) {
+ foundC = getAtoms();
+ }
+
return foundC;
}
@@ -747,8 +566,9 @@ void PhysicalModel::setAtoms ( StructuralComponent *sc, bool deleteOld ) {
Atom *a;
if ( sc->composedBy() == StructuralComponent::ATOMS ) {
- if ( atoms && deleteOld )
+ if ( atoms && deleteOld ) {
delete atoms;
+ }
atoms = sc;
@@ -768,8 +588,9 @@ bool PhysicalModel::addAtom ( Atom *newA ) {
// add the atom in the atom structural component
atoms->addStructure ( newA );
return true;
- } else
- return false; // atom does not have a unique index
+ } else {
+ return false; // atom does not have a unique index
+ }
}
// ----------------------- addGlobalIndexAtomPair ------------------
@@ -780,8 +601,9 @@ bool PhysicalModel::addGlobalIndexAtomPair ( std::GlobalIndexStructurePair p ) {
// if the index was found, one can not add the atom
- if ( mapIt != atomMap.end() )
+ if ( mapIt != atomMap.end() ) {
return false;
+ }
// if the atom is present in the map then replace the pair <atomIndex, Atom*>
mapIt = atomMap.begin();
@@ -791,8 +613,9 @@ bool PhysicalModel::addGlobalIndexAtomPair ( std::GlobalIndexStructurePair p ) {
}
// if found then remove the pair
- if ( mapIt != atomMap.end() )
+ if ( mapIt != atomMap.end() ) {
atomMap.erase ( mapIt );
+ }
// insert or re-insert (and return true if insertion was ok)
return atomMap.insert ( p ).second;
@@ -806,8 +629,9 @@ bool PhysicalModel::addGlobalIndexCellPair ( std::GlobalIndexStructurePair p ) {
// if the index was found, one can not add the cell
- if ( mapIt != cellMap.end() )
+ if ( mapIt != cellMap.end() ) {
return false;
+ }
// if the cell is present in the map then replace the pair <cellIndex, Cell*>
mapIt = cellMap.begin();
@@ -817,8 +641,9 @@ bool PhysicalModel::addGlobalIndexCellPair ( std::GlobalIndexStructurePair p ) {
}
// if found then remove the pair
- if ( mapIt != cellMap.end() )
+ if ( mapIt != cellMap.end() ) {
cellMap.erase ( mapIt );
+ }
// insert or re-insert
bool insertionOk = cellMap.insert ( p ).second;
@@ -826,8 +651,9 @@ bool PhysicalModel::addGlobalIndexCellPair ( std::GlobalIndexStructurePair p ) {
// is that optimized?
cellIndexOptimized = cellIndexOptimized && ( ( Cell * ) p.second )->getIndex() == optimizedCellList.size();
- if ( cellIndexOptimized )
+ if ( cellIndexOptimized ) {
optimizedCellList.push_back ( ( Cell * ) p.second );
+ }
// insert or re-insert (and return true if insertion was ok)
return insertionOk;
@@ -840,60 +666,67 @@ void PhysicalModel::setAtomPosition ( Atom *atom, const double pos[3] ) {
// ----------------------- setExclusiveComponents ------------------
void PhysicalModel::setExclusiveComponents ( MultiComponent *mc ) {
- if ( exclusiveComponents )
+ if ( exclusiveComponents ) {
delete exclusiveComponents;
+ }
exclusiveComponents = mc;
- mc->setPhysicalModel(this);
+ mc->setPhysicalModel ( this );
}
// ----------------------- setInformativeComponents ------------------
void PhysicalModel::setInformativeComponents ( MultiComponent *mc ) {
- if ( informativeComponents )
+ if ( informativeComponents ) {
delete informativeComponents;
+ }
informativeComponents = mc;
- mc->setPhysicalModel(this);
+ mc->setPhysicalModel ( this );
}
// ----------------------- getNumberOfExclusiveComponents ------------------
unsigned int PhysicalModel::getNumberOfExclusiveComponents() const {
- if ( !exclusiveComponents )
+ if ( !exclusiveComponents ) {
return 0;
- else
+ } else {
return exclusiveComponents->getNumberOfSubComponents();
+ }
}
// ----------------------- getNumberOfInformativeComponents ------------------
unsigned int PhysicalModel::getNumberOfInformativeComponents() const {
- if ( !informativeComponents )
+ if ( !informativeComponents ) {
return 0;
- else
+ } else {
return informativeComponents->getNumberOfSubComponents();
+ }
}
// ----------------------- getNumberOfAtoms ------------------
unsigned int PhysicalModel::getNumberOfAtoms() const {
- if ( !atoms )
+ if ( !atoms ) {
return 0;
- else
+ } else {
return atoms->getNumberOfStructures();
+ }
}
// ----------------------- getExclusiveComponent ------------------
Component * PhysicalModel::getExclusiveComponent ( const unsigned int i ) const {
- if ( !exclusiveComponents )
+ if ( !exclusiveComponents ) {
return 0;
- else
+ } else {
return exclusiveComponents->getSubComponent ( i );
+ }
}
// ----------------------- getInformativeComponent ------------------
Component * PhysicalModel::getInformativeComponent ( const unsigned int i ) const {
- if ( !informativeComponents )
+ if ( !informativeComponents ) {
return 0;
- else
+ } else {
return informativeComponents->getSubComponent ( i );
+ }
}
@@ -901,26 +734,27 @@ Component * PhysicalModel::getInformativeComponent ( const unsigned int i ) cons
void PhysicalModel::exportAnsysMesh ( std::string filename ) {
//--- Writing nodes
std::ofstream nodeFile;
- nodeFile.open(( filename + ".node" ).c_str());
+ nodeFile.open ( ( filename + ".node" ).c_str() );
if ( !nodeFile.is_open() ) {
std::cerr << "Error in PhysicalModel::exportAnsysMesh : unable to create .node output file" << std::endl;
return;
}
- for (unsigned int i = 0; i < getNumberOfAtoms(); i++ ) {
+ for ( unsigned int i = 0; i < getNumberOfAtoms(); i++ ) {
double pos[3];
//WARNING getAtom(i) do not work if indexes do not follow each others
- Atom* at=(Atom*)(atoms->getStructure(i));
+ Atom* at= ( Atom* ) ( atoms->getStructure ( i ) );
// WARNING : indexes are in base 1 !!!!
unsigned int ansysIndex = at->getIndex() + 1;
// coordinates of this node
at->getPosition ( pos );
- nodeFile << std::setw(8) << ansysIndex << " ";
- for (unsigned int j=0; j<3; j++)
- nodeFile << std::setprecision(8) << std::setw(3) << std::fixed << std::scientific << pos[j] << " ";
+ nodeFile << std::setw ( 8 ) << ansysIndex << " ";
+ for ( unsigned int j=0; j<3; j++ ) {
+ nodeFile << std::setprecision ( 8 ) << std::setw ( 3 ) << std::fixed << std::scientific << pos[j] << " ";
+ }
nodeFile << std::endl;
}
@@ -928,7 +762,7 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
//--- Writing elements : exlusive cells
std::ofstream elemFile;
- elemFile.open( ( filename + ".elem" ).c_str());
+ elemFile.open ( ( filename + ".elem" ).c_str() );
if ( !elemFile.is_open() ) {
std::cerr << "Error in PhysicalModel::exportAnsysMesh : unable to create .elem output file" << std::endl;
@@ -937,7 +771,7 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
int MAT, TYPE;
Component *elements = this->getComponentByName ( "Elements" );
- for (unsigned int i = 0; i < elements->getNumberOfCells(); i++ ) {
+ for ( unsigned int i = 0; i < elements->getNumberOfCells(); i++ ) {
// get the cell
Cell * cell = elements->getCell ( i );
@@ -958,11 +792,11 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
MAT = 1;
TYPE = 1;
- for (unsigned int k = 0; k < cell->getNumberOfStructures(); k++ ) {
- elemFile << " " << std::setw(5) << cell->getStructure ( k )->getIndex() + 1 ;
+ for ( unsigned int k = 0; k < cell->getNumberOfStructures(); k++ ) {
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( k )->getIndex() + 1 ;
}
- elemFile << " " << std::setw(5) << MAT << " " << std::setw(5) << TYPE << " 1 1 0 " << std::setw(5) << ansysIndex << std::endl;
+ elemFile << " " << std::setw ( 5 ) << MAT << " " << std::setw ( 5 ) << TYPE << " 1 1 0 " << std::setw ( 5 ) << ansysIndex << std::endl;
break;
case StructureProperties::WEDGE:
@@ -977,17 +811,17 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
MAT = 1;
TYPE = 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 0 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 1 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 2 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 2 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 0 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 1 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 2 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 2 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 4 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 5 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 5 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 4 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 5 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 5 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << MAT << " " << std::setw(5) << TYPE << " 1 1 0 " << std::setw(5) << ansysIndex << std::endl;
+ elemFile << " " << std::setw ( 5 ) << MAT << " " << std::setw ( 5 ) << TYPE << " 1 1 0 " << std::setw ( 5 ) << ansysIndex << std::endl;
break;
@@ -997,13 +831,13 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
MAT = 1;
TYPE = 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 0 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 1 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 2 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 0 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 1 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 2 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
elemFile << " 0 0 0 0" ;
- elemFile << " " << std::setw(5) << MAT << " " << std::setw(5) << TYPE << " 1 1 0 " << std::setw(5) << ansysIndex << std::endl;
+ elemFile << " " << std::setw ( 5 ) << MAT << " " << std::setw ( 5 ) << TYPE << " 1 1 0 " << std::setw ( 5 ) << ansysIndex << std::endl;
break;
@@ -1020,17 +854,17 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
MAT = 1;
TYPE = 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 0 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 1 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 2 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 2 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 0 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 1 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 2 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 2 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
+ elemFile << " " << std::setw ( 5 ) << cell->getStructure ( 3 )->getIndex() + 1;
- elemFile << " " << std::setw(5) << MAT << " " << std::setw(5) << TYPE << " 1 1 0 " << std::setw(5) << ansysIndex << std::endl;
+ elemFile << " " << std::setw ( 5 ) << MAT << " " << std::setw ( 5 ) << TYPE << " 1 1 0 " << std::setw ( 5 ) << ansysIndex << std::endl;
break;
@@ -1048,7 +882,7 @@ void PhysicalModel::exportAnsysMesh ( std::string filename ) {
// ----------------------- exportPatran ------------------
void PhysicalModel::exportPatran ( std::string filename ) {
std::ofstream outputFile;
- outputFile.open( filename.c_str());
+ outputFile.open ( filename.c_str() );
if ( !outputFile.is_open() ) {
std::cerr << "Error in PhysicalModel::exportPatran : unable to create output file" << std::endl;
return;
@@ -1063,20 +897,21 @@ void PhysicalModel::exportPatran ( std::string filename ) {
//--- Nodes (atoms)
- for (unsigned int i = 0; i < this->getNumberOfAtoms(); i++ ) {
+ for ( unsigned int i = 0; i < this->getNumberOfAtoms(); i++ ) {
double pos[3];
// first line
// WARNING : indexes are in base 1 !!!!
- outputFile << " 1" << std::setw(8) << getAtom ( i )->getIndex() + 1 << " 0 2 0 0 0 0 0\n";
+ outputFile << " 1" << std::setw ( 8 ) << getAtom ( i )->getIndex() + 1 << " 0 2 0 0 0 0 0\n";
// coordinates of this node
// fscanf(inputFile, "%d %f %f %f", &j, &x, &y, &z);
getAtom ( i )->getPosition ( pos );
// second line : node coordinates
- for (unsigned int j=0; j<3; j++)
- outputFile << std::setprecision(8) << std::setw(16) << std::fixed << std::scientific << pos[j];
+ for ( unsigned int j=0; j<3; j++ ) {
+ outputFile << std::setprecision ( 8 ) << std::setw ( 16 ) << std::fixed << std::scientific << pos[j];
+ }
outputFile << " " << std::endl;
// third line : ??
@@ -1086,7 +921,7 @@ void PhysicalModel::exportPatran ( std::string filename ) {
//--- Elements : exlusive cells
- for (unsigned int i = 0; i < this->getExclusiveComponent ( 0 )->getNumberOfCells(); i++ ) {
+ for ( unsigned int i = 0; i < this->getExclusiveComponent ( 0 )->getNumberOfCells(); i++ ) {
int typeElement;
// get the cell
@@ -1108,14 +943,14 @@ void PhysicalModel::exportPatran ( std::string filename ) {
}
// first element line
- outputFile << " 2" << std::setw(8) << cell->getIndex() + 1 << std::setw(8) << typeElement << " 2 0 0 0 0 0\n";
+ outputFile << " 2" << std::setw ( 8 ) << cell->getIndex() + 1 << std::setw ( 8 ) << typeElement << " 2 0 0 0 0 0\n";
// second element line
- outputFile << std::setw(8) << cell->getNumberOfStructures() << " 0 1 0 0.000000000E+00 0.000000000E+00 0.000000000E+00\n";
+ outputFile << std::setw ( 8 ) << cell->getNumberOfStructures() << " 0 1 0 0.000000000E+00 0.000000000E+00 0.000000000E+00\n";
// third element line : list of nodes
- for (unsigned int k = 0; k < cell->getNumberOfStructures(); k++ ) {
- outputFile << std::setw(8) << cell->getStructure ( k )->getIndex() + 1;
+ for ( unsigned int k = 0; k < cell->getNumberOfStructures(); k++ ) {
+ outputFile << std::setw ( 8 ) << cell->getStructure ( k )->getIndex() + 1;
}
outputFile << "\n";
diff --git a/modeling/libraries/pml/PhysicalModel.h b/modeling/libraries/pml/PhysicalModel.h
index b777c37..8b142b9 100644
--- a/modeling/libraries/pml/PhysicalModel.h
+++ b/modeling/libraries/pml/PhysicalModel.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,20 +26,31 @@
#ifndef PHYSICALMODEL_H
#define PHYSICALMODEL_H
+//pmlschema forward declaration
+namespace physicalModel {
+class PhysicalModel;
+class Atoms;
+class ExclusiveComponent;
+class InformativeComponent;
+class MultiComponent;
+}
+
#include "PhysicalModelIO.h"
#include <string>
-#include <vector>
+#include <memory>
#include <algorithm>
#include "PMLAbortException.h"
#include "StructuralComponent.h" // so we can put the optimized getAtom method inline
#include "Atom.h" // so we can put the optimized getAtom method inline
#include "Cell.h" // so we can put the optimized getCell method inline
+
class MultiComponent;
class Component;
class Cell;
class Structure;
+
// Hide warning for Exception + declspec(nothrow)
#if defined(_WIN32) && !defined(__MINGW32__) // MSVC only
#pragma warning( disable : 4290 )
@@ -62,6 +73,7 @@ typedef std::map <unsigned int, Structure *> GlobalIndexStructureMap;
typedef std::map <unsigned int, Structure *> ::iterator GlobalIndexStructureMapIterator;
}
+
/**
* @ingroup group_cepmodeling_libraries_pml
*
@@ -198,6 +210,14 @@ public:
bool addAtom(Atom *);
/** Get the atom that has the global index given in parameters.
+ * The global index of an atom is the index stored as its property.
+ * This is different from its rank in the atoms list as Physical Model do not nessecarily
+ * have consecutive indexes starting at 0.
+ *
+ * Therefore:
+ * - getAtom(id) can therefore be different than getAtoms()->getStructure(id)
+ * - getAtom(id) is equivalent to getAtoms()->getStructureByIndex(id)
+ *
* @param id the atom index in the physical model
* @return the corresponding atom or NULL if non existant (i.e. no atoms have this index)
*/
@@ -258,14 +278,14 @@ private:
/** use the XML Parser/Reader to read an XML file conform to physicalmodel.dtd
* @param n the name of the XML file
*/
- void xmlRead(const char * n);
+ void xmlRead(const char * n) throw(PMLAbortException);
- /** read the xml tree and call other parse methods to biuld the physicalModel. */
- bool parseTree(xmlNodePtr root);
+ /** read the xml tree and call other parse methods to build the physicalModel. */
+ bool parseTree(std::auto_ptr<physicalModel::PhysicalModel> root, std::string defaultName);
/** read the atom list in the xml tree and build them. */
- bool parseAtoms(xmlNodePtr atomsRoot);
+ bool parseAtoms(physicalModel::Atoms atomsRoot);
/** read the exclusive components list in the xml tree and build them. */
- bool parseComponents(xmlNodePtr exclusiveRoot, Component * father, bool isExclusive);
+ bool parseComponents(physicalModel::MultiComponent mcFather, Component* father, bool isExclusive );
/// all physical model properties
Properties *properties;
diff --git a/modeling/libraries/pml/PhysicalModelIO.h b/modeling/libraries/pml/PhysicalModelIO.h
index b8ec35b..aec84ae 100644
--- a/modeling/libraries/pml/PhysicalModelIO.h
+++ b/modeling/libraries/pml/PhysicalModelIO.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,6 +33,7 @@
#include <string>
#include <exception>
#include <sstream>
+#include <vector>
#include <map>
#include <set>
diff --git a/modeling/libraries/pml/PhysicalModelVersion.h.in b/modeling/libraries/pml/PhysicalModelVersion.h.in
index d0b06fa..60542e3 100644
--- a/modeling/libraries/pml/PhysicalModelVersion.h.in
+++ b/modeling/libraries/pml/PhysicalModelVersion.h.in
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/PhysicalProperties/AtomProperties.cpp b/modeling/libraries/pml/PhysicalProperties/AtomProperties.cpp
deleted file mode 100644
index ce0a480..0000000
--- a/modeling/libraries/pml/PhysicalProperties/AtomProperties.cpp
+++ /dev/null
@@ -1,60 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "PhysicalModelIO.h"
-#include "AtomProperties.h"
-
-//--------------- Constructor -------------
-void AtomProperties::init() {
- myCustomProperty1 = 10;
- myCustomProperty2 = "no name";
-
-}
-
-//--------------- destructor --------------
-AtomProperties::~AtomProperties() {
-}
-
-// --------------- xmlPrint ---------------
-void AtomProperties::xmlPrint(std::ostream &o) {
-
- // beginning of the atom properties
- beginXML(o);
-
- for(std::map<std::string, std::string>::iterator it = fields.begin(); it!=fields.end() ; it++)
- o << " "<<(*it).first<<"=\"" <<(*it).second<< "\"";
-
- // print the custom properties only if different than default value
- if (myCustomProperty1 != 10) {
- o << " myCustomProperty1=\"" << myCustomProperty1 << "\"";
- }
- if (myCustomProperty2 != "no name") {
- o << " myCustomProperty2=\"" << myCustomProperty2 << "\"";
- }
-
- // end of the properties
- endXML(o);
-}
-
diff --git a/modeling/libraries/pml/PhysicalProperties/AtomProperties.h b/modeling/libraries/pml/PhysicalProperties/AtomProperties.h
deleted file mode 100644
index 92bc5c2..0000000
--- a/modeling/libraries/pml/PhysicalProperties/AtomProperties.h
+++ /dev/null
@@ -1,99 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef ATOMPROPERTIES_H
-#define ATOMPROPERTIES_H
-
-#include "BasicAtomProperties.h"
-
-/**
- * This is an automatically generated class for custom Atom properties.
- * It was generated by the <tt>customPhysicalProperties</tt> stylesheet from
- * the following xml document:
- <pre>
-
-
-
-
- </pre>
- * This class inherits BasicAtomProperties.
- * Here is all the specific attributes of Atom properties (custom physical properties)
- *
- */
-class AtomProperties : public BasicAtomProperties {
-public:
- /** Constructors (do not change) */
- AtomProperties(PhysicalModel *p) : BasicAtomProperties(p) {
- init();
- };
- AtomProperties(PhysicalModel *p, xmlNodePtr node) : BasicAtomProperties(p, node) {
- init();
- };
- AtomProperties(PhysicalModel *p, const unsigned int ind) : BasicAtomProperties(p, ind) {
- init();
- };
- AtomProperties(PhysicalModel *p, const double pos[3]) : BasicAtomProperties(p, pos) {
- init();
- };
- AtomProperties(PhysicalModel *p, const unsigned int ind, const double pos[3]) : BasicAtomProperties(p, ind, pos) {
- init();
- };
- virtual ~AtomProperties();
-
- /** Print the properties in xml */
- void xmlPrint(std::ostream &);
-
- /** Set and get method for all the properties */
- void setMyCustomProperty1(const int);
- int getMyCustomProperty1() const;
-
- void setMyCustomProperty2(const std::string);
- std::string getMyCustomProperty2() const;
-
-
-protected:
-
- virtual void init();
- int myCustomProperty1;
- std::string myCustomProperty2;
-
-};
-
-// inlines
-inline void AtomProperties::setMyCustomProperty1(const int value) {
- myCustomProperty1 = value;
-}
-inline int AtomProperties::getMyCustomProperty1() const {
- return myCustomProperty1;
-}
-inline void AtomProperties::setMyCustomProperty2(const std::string value) {
- myCustomProperty2 = value;
-}
-inline std::string AtomProperties::getMyCustomProperty2() const {
- return myCustomProperty2;
-}
-
-#endif
-
diff --git a/modeling/libraries/pml/PhysicalProperties/CellProperties.cpp b/modeling/libraries/pml/PhysicalProperties/CellProperties.cpp
deleted file mode 100644
index ab90986..0000000
--- a/modeling/libraries/pml/PhysicalProperties/CellProperties.cpp
+++ /dev/null
@@ -1,60 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "PhysicalModelIO.h"
-#include "CellProperties.h"
-
-//--------------- Constructor -------------
-void CellProperties::init() {
- myCustomProperty1 = 0.0;
- myCustomProperty2 = 0;
-
-}
-
-//--------------- destructor --------------
-CellProperties::~CellProperties() {
-}
-
-// --------------- xmlPrint ---------------
-void CellProperties::xmlPrint(std::ostream &o) {
-
- // beginning of the atom properties
- beginXML(o);
-
- for(std::map<std::string, std::string>::iterator it = fields.begin(); it!=fields.end() ; it++)
- o << " "<<(*it).first<<"=\"" <<(*it).second<< "\"";
-
- // print the custom properties only if different than default value
- if (myCustomProperty1 != 0.0) {
- o << " myCustomProperty1=\"" << myCustomProperty1 << "\"";
- }
- if (myCustomProperty2 != 0) {
- o << " myCustomProperty2=\"" << myCustomProperty2 << "\"";
- }
-
- // end of the properties
- endXML(o);
-}
-
diff --git a/modeling/libraries/pml/PhysicalProperties/CellProperties.h b/modeling/libraries/pml/PhysicalProperties/CellProperties.h
deleted file mode 100644
index 14f7b9e..0000000
--- a/modeling/libraries/pml/PhysicalProperties/CellProperties.h
+++ /dev/null
@@ -1,92 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef CELLPROPERTIES_H
-#define CELLPROPERTIES_H
-
-#include "BasicCellProperties.h"
-
-/**
- * This is an automatically generated class for custom Cell properties.
- * It was generated by the <tt>customPhysicalProperties</tt> stylesheet from
- * the following xml document:
- <pre>
-
-
-
-
- </pre>
- * This class inherits BasicCellProperties.
- * Here is all the specific attributes of Cell properties (custom physical properties).
- */
-class CellProperties : public BasicCellProperties {
-public:
- /** Constructors (do not change) */
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t) : BasicCellProperties(p, t) {
- init();
- };
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t ,xmlNodePtr node) : BasicCellProperties(p, t, node) {
- init();
- };
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t, const unsigned int ind) : BasicCellProperties(p, t, ind) {
- init();
- };
- virtual ~CellProperties();
-
- /** Print the properties in xml */
- void xmlPrint(std::ostream &);
-
- /** Set and get method for all the properties */
- void setMyCustomProperty1(const float);
- float getMyCustomProperty1() const;
-
- void setMyCustomProperty2(const int);
- int getMyCustomProperty2() const;
-
-
-protected:
-
- virtual void init();
- float myCustomProperty1;
- int myCustomProperty2;
-
-};
-
-// inlines
-inline void CellProperties::setMyCustomProperty1(const float value) {
- myCustomProperty1 = value;
-}
-inline float CellProperties::getMyCustomProperty1() const {
- return myCustomProperty1;
-}
-inline void CellProperties::setMyCustomProperty2(const int value) {
- myCustomProperty2 = value;
-}
-inline int CellProperties::getMyCustomProperty2() const {
- return myCustomProperty2;
-}
-
-#endif
-
diff --git a/modeling/libraries/pml/PhysicalProperties/README b/modeling/libraries/pml/PhysicalProperties/README
deleted file mode 100644
index 86b6d5e..0000000
--- a/modeling/libraries/pml/PhysicalProperties/README
+++ /dev/null
@@ -1,9 +0,0 @@
-To use the physicalModel lib, but building your own custom properties:
-- create a sub-directory MyPhysicalProperties in the root directory of
-the library (from here : mkdir ../MyPhysicalProperties)
-- copy all the files (there are 7 of them) in this directory to your directory
-- add an environment variable called PHYSICALMODELPROPERTIES which is the name of
-the directory you put your custom physical properties (here for example the
-PHYSICALMODELPROPERTIES should be set to MyPhysicalProperties)
-- verify that the compilation use your own directory and that the lib compile without errors
-- modify the AtomProperties, CellProperties and StructuralProperties as you wish !
diff --git a/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.cpp b/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.cpp
deleted file mode 100644
index 60a9b69..0000000
--- a/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.cpp
+++ /dev/null
@@ -1,61 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include "PhysicalModelIO.h"
-#include "StructuralComponentProperties.h"
-
-//--------------- Constructor -------------
-void StructuralComponentProperties::init() {
- myCustomProperty1 = 0;
- myCustomProperty2 = "~";
-
-}
-
-//--------------- destructor --------------
-StructuralComponentProperties::~StructuralComponentProperties() {
-}
-
-// --------------- xmlPrint ---------------
-void StructuralComponentProperties::xmlPrint(std::ostream &o) {
-
- // beginning of the SC properties
- beginXML(o);
-
- // print all fields
- for(std::map<std::string, std::string>::iterator it = fields.begin(); it!=fields.end() ; it++)
- o << " "<<(*it).first<<"=\"" <<(*it).second<< "\"";
-
- // print the custom properties only if different than default value
- if (myCustomProperty1 != 0) {
- o << " myCustomProperty1=\"" << myCustomProperty1 << "\"";
- }
- if (myCustomProperty2 != "~") {
- o << " myCustomProperty2=\"" << myCustomProperty2 << "\"";
- }
-
- // end of the properties
- endXML(o);
-}
-
diff --git a/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.h b/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.h
deleted file mode 100644
index db5fdce..0000000
--- a/modeling/libraries/pml/PhysicalProperties/StructuralComponentProperties.h
+++ /dev/null
@@ -1,112 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef STRUCTURALCOMPONENTPROPERTIES_H
-#define STRUCTURALCOMPONENTPROPERTIES_H
-
-#include "BasicSCProperties.h"
-
-/**
- * This is an automatically generated class for custom StructuralComponent properties.
- * It was generated by the <tt>customPhysicalProperties</tt> stylesheet from
- * the following xml document:
- <pre>
-
-
-
-
- </pre>
- * This class inherits BasicSCProperties.
- * Here is all the specific attributes of StructuralComponent properties (custom physical properties).
- *
- */
-class StructuralComponentProperties : public BasicSCProperties {
-public:
- /** Constructors (do not change) */
- StructuralComponentProperties(PhysicalModel *p) : BasicSCProperties(p) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, xmlNodePtr node) : BasicSCProperties(p, node) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const std::string n) : BasicSCProperties(p, n) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const Color c) : BasicSCProperties(p,c) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const Color c, const std::string n) : BasicSCProperties(p,c,n) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const double * rgb) : BasicSCProperties(p, rgb) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const double * rgb, const std::string n) : BasicSCProperties(p, rgb,n) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b) : BasicSCProperties(p, r,g,b) {
- init();
- };
- StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b, const std::string n) : BasicSCProperties(p,r,g,b,n
- ) {
- init();
- };
- virtual ~StructuralComponentProperties();
-
- /** Print the properties in xml */
- void xmlPrint(std::ostream &);
-
- /** Set and get method for all the properties */
- void setMyCustomProperty1(const int);
- int getMyCustomProperty1() const;
-
- void setMyCustomProperty2(const std::string);
- std::string getMyCustomProperty2() const;
-
-
-protected:
-
- virtual void init();
- int myCustomProperty1;
- std::string myCustomProperty2;
-
-};
-
-// inlines
-inline void StructuralComponentProperties::setMyCustomProperty1(const int value) {
- myCustomProperty1 = value;
-}
-inline int StructuralComponentProperties::getMyCustomProperty1() const {
- return myCustomProperty1;
-}
-inline void StructuralComponentProperties::setMyCustomProperty2(const std::string value) {
- myCustomProperty2 = value;
-}
-inline std::string StructuralComponentProperties::getMyCustomProperty2() const {
- return myCustomProperty2;
-}
-
-#endif
-
diff --git a/modeling/libraries/pml/PhysicalProperties/default.xml b/modeling/libraries/pml/PhysicalProperties/default.xml
deleted file mode 100644
index 9642b4f..0000000
--- a/modeling/libraries/pml/PhysicalProperties/default.xml
+++ /dev/null
@@ -1,30 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Document : example.xml
- Created on : 02 March 2004, 15:44
- Author : promayon
- Description:
- Small example of custom properties definition.
--->
-
-<physicalProperties xmlns='http://www-timc.imag.fr/customPhysicalProperties'
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/customPhysicalProperties ../PhysicalPropertiesCustomizer/customPhysicalProperties.xsd'>
-
- <atomProperties>
- <property name="myCustomProperty1" type="int" defaultValue="10"/>
- <property name="myCustomProperty2" type="std::string" defaultValue="no name"/>
- </atomProperties>
-
- <cellProperties inherits="false"> <!-- structural component properties can not be used as well on Cells -->
- <property name="myCustomProperty1" type="float"/>
- <property name="myCustomProperty2" type="int"/>
- </cellProperties>
-
- <structuralComponentProperties>
- <property name="myCustomProperty1" type="int"/>
- <property name="myCustomProperty2" type="std::string" defaultValue="~"/>
- </structuralComponentProperties>
-
-</physicalProperties>
diff --git a/modeling/libraries/pml/PhysicalPropertiesCustomizer/README b/modeling/libraries/pml/PhysicalPropertiesCustomizer/README
deleted file mode 100644
index e8b034c..0000000
--- a/modeling/libraries/pml/PhysicalPropertiesCustomizer/README
+++ /dev/null
@@ -1,43 +0,0 @@
-Automatic generation of custom properties C++ classes
------------------------------------------------------
-
-* This directory contains:
-
-- customPhysicalProperties.xsl : a XSLT Stylesheet that automatically generate custom property classes.
-- customPhysicalProperties.xsd : a XSD document definint the XML language to use to define custom properties.
-- example.xml : an example of custom properties. This document is valid relatively to what is defined
- in customPhysicalProperties.xsd and can be taken as input of customPhysicalProperties.xsl to generate
- C++ classes
-
- --------
-
-* Testing custom properties:
-
-1) use the XSL stylesheet customPhysicalProperties.xsl with example.xml as input data
- that will generate 7 files (3 headers and 4 implementation) in the subdirectory src
-2) define the environment variable PHYSICALMODELPROPERTIES to point to the subdirectory src
-3) re-generate the Makefile using qmake and physicalModel.pro
-4) recompile the physical model library. It will now take the extra properties into account
-5) recompile pmltest and check that all the custom properties described in the
- document "customProperty-example.pml" (and also in example.xml)
- are really taken into account (i.e. read from the PML document and saved properly)
-
- --------
-
-* Custom physical property language:
-
-The XSD is auto-documented (read the xsd:annotation fields of each element to learn more about it).
-There are three kind of properties that can be added to a PML :
-- atom properties
-- cell properties
-- structural component properties
-
-Each custom property is defined by a name, a C++ type, and a default value (given if the property XML attribute is not
-present in the XML document).
-
-Note: the "inherits" attribute of cellProperties indicates if the CellProperties inherits from StructuralComponentProperties.
-So if it is equal to "true" or "1" then the custom properties defined for a structural components can also
-be used for cells.
-
----
-(C) 2001-2004 TIMC (E. Promayon, M. Chabanas)
\ No newline at end of file
diff --git a/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsd b/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsd
deleted file mode 100644
index bf45185..0000000
--- a/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsd
+++ /dev/null
@@ -1,126 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Document : autoPhysicalPropeties.xsd
- Created on : 02 December 2004, 15:40
- Author : Emmanuel Promayon
- Description:
- Description of the format for automatic generation of property classes
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
- targetNamespace="http://www-timc.imag.fr/customPhysicalProperties"
- xmlns="http://www-timc.imag.fr/customPhysicalProperties"
- elementFormDefault="qualified">
-
- <xsd:element name="physicalProperties" type="PhysicalProperties">
- <xsd:annotation>
- <xsd:documentation>
- The root element of the xml document
- </xsd:documentation>
- </xsd:annotation>
- </xsd:element>
-
- <xsd:complexType name="PhysicalProperties">
- <xsd:annotation>
- <xsd:documentation>
- The composition of the XML document includes (in this order) the
- list of properties to add to Atom, Cell and StructuralComponent.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="atomProperties" type="AtomProperties"/>
- <xsd:element name="cellProperties" type="CellProperties"/>
- <xsd:element name="structuralComponentProperties" type="SCProperties"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:group name="PropertyList">
- <xsd:annotation>
- <xsd:documentation>
- Description of the generic property list.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="property" type="Property" maxOccurs="unbounded" />
- </xsd:sequence>
- </xsd:group>
-
- <xsd:complexType name="Property">
- <xsd:annotation>
- <xsd:documentation>
- A property is an empty element that defines what kind of property is to be added.
- It needs a name and a C++ type.
- A default value can be defined, the property will be set using this value as default.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="name" type="xsd:string" use="required"/>
- <xsd:attribute name="type" type="CppAtomicType" use="required"/>
- <xsd:attribute name="defaultValue" type="xsd:string"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="CppAtomicType">
- <xsd:annotation>
- <xsd:documentation>
- List of all the possible property types
- </xsd:documentation>
- </xsd:annotation>
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="bool"/>
- <xsd:enumeration value="char"/>
- <xsd:enumeration value="unsigned char"/>
- <xsd:enumeration value="signed char"/>
- <xsd:enumeration value="int"/>
- <xsd:enumeration value="unsigned int"/>
- <xsd:enumeration value="signed int"/>
- <xsd:enumeration value="short int"/>
- <xsd:enumeration value="unsigned short int"/>
- <xsd:enumeration value="signed short int"/>
- <xsd:enumeration value="long int"/>
- <xsd:enumeration value="signed long int"/>
- <xsd:enumeration value="unsigned long int"/>
- <xsd:enumeration value="float"/>
- <xsd:enumeration value="double"/>
- <xsd:enumeration value="long double"/>
- <xsd:enumeration value="std::string"/>
- <xsd:enumeration value="string"/>
- </xsd:restriction>
- </xsd:simpleType>
-
- <xsd:complexType name="AtomProperties">
- <xsd:annotation>
- <xsd:documentation>
- List of custom atom properties
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="PropertyList"/>
- </xsd:complexType>
-
- <xsd:complexType name="CellProperties">
- <xsd:annotation>
- <xsd:documentation>
- This list will autogenerate the CellProperties C++ class.
- "inherits" is an attribute of cell properties that tells if the corresponding
- generated class CellProperties will be inheriting from StructuralPropertiesComponent
- class.
- If not present the default value is false.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="PropertyList"/>
- <xsd:attribute name="inherits" type="xsd:boolean"/>
- </xsd:complexType>
-
- <xsd:complexType name="SCProperties">
- <xsd:annotation>
- <xsd:documentation>
- List of custom structural component properties
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="PropertyList"/>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsl b/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsl
deleted file mode 100644
index 13062c3..0000000
--- a/modeling/libraries/pml/PhysicalPropertiesCustomizer/customPhysicalProperties.xsl
+++ /dev/null
@@ -1,741 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-
-<!--
- Document : autoPhysicalProperties.xsl
- Created on : 02 March 2004, 15:48
- Author : promayon
- Description:
- Generate the custom properties C++ classes from the custom property XML document.
-
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
--->
-
-<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
- xmlns:cp='http://www-timc.imag.fr/customPhysicalProperties'
- xmlns:date="http://exslt.org/dates-and-times"
- xmlns:common="http://exslt.org/common">
-
- <!-- get the current date -->
- <xsl:variable name="now" select="date:date-time()"/>
-
- <!-- used to transform from upper to lower case and lower to upper case -->
- <xsl:variable name="upperCase" select="'ABCDEFGHIJKLMNOPQRSTUVWXYZ'"/>
- <xsl:variable name="lowerCase" select="'abcdefghijklmnopqrstuvwxyz'"/>
-
- <xsl:template match="cp:physicalProperties">
- <!-- generate the 6 C++ files (1 header and 1 implementation file per type) -->
- <xsl:apply-templates select="cp:atomProperties"/>
- <xsl:apply-templates select="cp:cellProperties"/>
- <xsl:apply-templates select="cp:structuralComponentProperties"/>
-
- <!-- genetrate the parameter reading methods -->
- <xsl:call-template name="xmlHandler">
- <xsl:with-param name="inherits"><xsl:value-of select="cp:cellProperties/@inherits"/></xsl:with-param>
- </xsl:call-template>
- </xsl:template>
-
-
- <!-- generate custom properties classes for atom -->
- <xsl:template match="cp:atomProperties">
- <xsl:document href="src/AtomProperties.h" method="text">
- <xsl:call-template name="header">
- <xsl:with-param name="class">Atom</xsl:with-param>
- <xsl:with-param name="baseClass">BasicAtomProperties</xsl:with-param>
- </xsl:call-template>
- <xsl:call-template name="atomConstructors"/>
- <xsl:call-template name="propertyDeclaration">
- <xsl:with-param name="class">Atom</xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- <xsl:document href="src/AtomProperties.cpp" method="text">
- <xsl:call-template name="implementation">
- <xsl:with-param name="class">Atom</xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- </xsl:template>
-
- <xsl:template match="cp:cellProperties">
- <xsl:document href="src/CellProperties.h" method="text">
- <xsl:call-template name="header">
- <xsl:with-param name="class">Cell</xsl:with-param>
- <xsl:with-param name="baseClass">BasicCellProperties</xsl:with-param>
- <xsl:with-param name="inherits"><xsl:value-of select="@inherits"/></xsl:with-param>
- </xsl:call-template>
- <xsl:call-template name="cellConstructors">
- <xsl:with-param name="inherits"><xsl:value-of select="@inherits"/></xsl:with-param>
- </xsl:call-template>
- <xsl:call-template name="propertyDeclaration">
- <xsl:with-param name="class">Cell</xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- <xsl:document href="src/CellProperties.cpp" method="text">
- <xsl:call-template name="implementation">
- <xsl:with-param name="class">Cell</xsl:with-param>
- <xsl:with-param name="inherits"><xsl:value-of select="@inherits"/></xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- </xsl:template>
-
- <xsl:template match="cp:structuralComponentProperties">
- <xsl:document href="src/StructuralComponentProperties.h" method="text">
- <xsl:call-template name="header">
- <xsl:with-param name="class">StructuralComponent</xsl:with-param>
- <xsl:with-param name="baseClass">BasicSCProperties</xsl:with-param>
- </xsl:call-template>
- <xsl:call-template name="scConstructors"/>
- <xsl:call-template name="propertyDeclaration">
- <xsl:with-param name="class">StructuralComponent</xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- <xsl:document href="src/StructuralComponentProperties.cpp" method="text">
- <xsl:call-template name="implementation">
- <xsl:with-param name="class">StructuralComponent</xsl:with-param>
- </xsl:call-template>
- </xsl:document>
- </xsl:template>
-
-
-
-
-
-
- <xsl:template name="currentDate">
- <xsl:text> auto-generated : </xsl:text>
- <xsl:value-of select="concat(date:day-name($now), ' ', date:day-in-month($now), ' ',
- date:month-name($now), ' ',
- date:year($now))"/>
- <xsl:text> at </xsl:text>
- <xsl:value-of select="concat(date:hour-in-day($now), ':',
- date:minute-in-hour($now), ':',
- date:second-in-minute($now))"/>
- </xsl:template>
-
-
-
-
-
-
-
- <xsl:template name="header">
- <xsl:param name="class"/>
- <xsl:param name="baseClass"/>
- <xsl:param name="inherits"/>
-
- <xsl:variable name="upperName">
- <xsl:value-of select="translate($class, $lowerCase, $upperCase)"/>
- </xsl:variable>
-
- <xsl:text>/***************************************************************************
- </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties.h - custom </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text> properties
- -------------------
-</xsl:text>
- <xsl:call-template name="currentDate"/>
- <xsl:text>
- copyright : (C) 2001-</xsl:text>
- <xsl:value-of select="date:year($now)"/>
- <xsl:text> TIMC (E. Promayon, M. Chabanas)
- email : Emmanuel.Promayon at imag.fr
- Date : $Date: 2008-02-20 18:08:02 +0100 (Wed, 20 Feb 2008) $
- Version : $Revision: 2267 $
- ***************************************************************************/
-
-/***************************************************************************
- * *
- * This program is free software; you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation; either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- ***************************************************************************/
-
-#ifndef </xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>PROPERTIES_H
-#define </xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>PROPERTIES_H
-
-#include "</xsl:text>
- <xsl:value-of select="$baseClass"/>
- <xsl:text>.h"
-</xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>#include "StructuralComponentProperties.h"
- </xsl:text>
- </xsl:if>
- <xsl:text>
-/**
- * This is an automatically generated class for custom </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text> properties.
- * It was generated by the <tt>customPhysicalProperties</tt> stylesheet from
- * the following xml document:
- <pre>
- </xsl:text>
- <!-- <xsl:copy-of select="common:node-set(/*)"/> //-->
- <xsl:copy-of select="."/>
- <xsl:text>
- </pre>
- * This class inherits </xsl:text>
- <xsl:value-of select="$baseClass"/>
- <xsl:text>.
- * Here is all the specific attributes of </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text> properties (custom physical properties)
- *
- * @author Emmanuel Promayon
- * $Revision $
- */
-class </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties : public </xsl:text>
- <xsl:value-of select="$baseClass"/>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>, public StructuralComponentProperties
- </xsl:text>
- </xsl:if>
- <xsl:text> {
-public:
- /** Constructors (do not change) */</xsl:text>
- </xsl:template>
-
-
-
- <xsl:template name="atomConstructors">
- <xsl:text>
- AtomProperties(PhysicalModel *p) : BasicAtomProperties(p) { init(); };
- AtomProperties(PhysicalModel *p, xmlNodePtr node) : BasicAtomProperties(p, node) { init(); };
- AtomProperties(PhysicalModel *p, const unsigned int ind) : BasicAtomProperties(p, ind) { init(); };
- AtomProperties(PhysicalModel *p, const double pos[3]) : BasicAtomProperties(p, pos) { init(); };
- AtomProperties(PhysicalModel *p, const unsigned int ind, const double pos[3]) : BasicAtomProperties(p, ind, pos) { init(); };
- virtual ~AtomProperties();</xsl:text>
- </xsl:template>
-
-
- <xsl:template name="cellConstructors">
- <xsl:param name="inherits"/>
- <xsl:text>
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t) : BasicCellProperties(p, t)</xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>, StructuralComponentProperties(p)</xsl:text>
- </xsl:if>
- <xsl:text> { init(); };
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t ,xmlNodePtr node) : BasicCellProperties(p, t, node)</xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>, StructuralComponentProperties(p)</xsl:text>
- </xsl:if>
- <xsl:text> { init(); };
- CellProperties(PhysicalModel *p, const StructureProperties::GeometricType t, const unsigned int ind) : BasicCellProperties(p, t, ind)</xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>, StructuralComponentProperties(p)</xsl:text>
- </xsl:if>
- <xsl:text>{ init(); };
- virtual ~CellProperties();</xsl:text>
- </xsl:template>
-
- <xsl:template name="scConstructors">
- <xsl:text>
- StructuralComponentProperties(PhysicalModel *p) : BasicSCProperties(p) { init(); };
- StructuralComponentProperties(PhysicalModel *p, xmlNodePtr node) : BasicSCProperties(p, node) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const std::string n) : BasicSCProperties(p, n) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const Color c) : BasicSCProperties(p,c) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const Color c, const std::string n) : BasicSCProperties(p,c,n) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const double * rgb) : BasicSCProperties(p, rgb) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const double * rgb, const std::string n) : BasicSCProperties(p, rgb,n) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b) : BasicSCProperties(p, r,g,b) { init(); };
- StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b, const std::string n) : BasicSCProperties(p,r,g,b,n
-) { init(); };
- virtual ~StructuralComponentProperties();</xsl:text>
- </xsl:template>
-
-
-
-
-
- <xsl:template name="propertyDeclaration">
- <xsl:param name="class"/>
-
- <xsl:text>
-
- /** Print the properties in xml */
- void xmlPrint(std::ostream &);
-
- /** Set and get method for all the properties */
- </xsl:text>
-
- <!-- mutator and acessor methods -->
- <xsl:for-each select="cp:property">
- <!-- transform the property name first letter in uppercase -->
- <xsl:variable name="upperName">
- <xsl:value-of select="concat(translate(substring(@name,1,1), $lowerCase, $upperCase), substring(@name,2))"/>
- </xsl:variable>
-
- <!-- mutator -->
- <xsl:text>void set</xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>(const </xsl:text>
- <xsl:value-of select="@type"/>
- <xsl:text>);
- </xsl:text>
-
- <!-- accessor -->
- <xsl:value-of select="@type"/>
- <xsl:text> get</xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>() const;
-
- </xsl:text>
- </xsl:for-each>
-
- <!-- attributes declaration (private) -->
- <xsl:text>
-protected:
-
- virtual void init();
- </xsl:text>
-
- <xsl:for-each select="cp:property">
- <xsl:value-of select="@type"/>
- <xsl:text> </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text>;
- </xsl:text>
- </xsl:for-each>
-
- <xsl:text>
-};
-
-// inlines
-</xsl:text>
-
- <!-- inline methods -->
- <xsl:for-each select="cp:property">
- <!-- transform the property name first letter in uppercase -->
- <xsl:variable name="upperName">
- <xsl:value-of select="concat(translate(substring(@name,1,1), $lowerCase, $upperCase), substring(@name,2))"/>
- </xsl:variable>
-
- <!-- mutator -->
- <xsl:text>inline void </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties::set</xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>(const </xsl:text>
- <xsl:value-of select="@type"/>
- <xsl:text> value) { </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text> = value; }
-</xsl:text>
-
- <!-- accessor -->
- <xsl:text>inline </xsl:text>
- <xsl:value-of select="@type"/>
- <xsl:text> </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties::get</xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>() const { return </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text>; }
-</xsl:text>
- </xsl:for-each>
-
- <xsl:text>
-#endif
-
-</xsl:text>
-
- </xsl:template>
-
-
-
-
- <xsl:template name="implementation">
- <xsl:param name="class"/>
- <xsl:param name="inherits"/>
-
- <xsl:variable name="upperName">
- <xsl:value-of select="translate($class, $lowerCase, $upperCase)"/>
- </xsl:variable>
-
- <xsl:text>/***************************************************************************
- </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties.cpp - custom </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text> properties
- -------------------
-</xsl:text>
- <xsl:call-template name="currentDate"/>
- <xsl:text>
- copyright : (C) 2001-</xsl:text>
- <xsl:value-of select="date:year($now)"/>
- <xsl:text> TIMC (E. Promayon, M. Chabanas)
- email : Emmanuel.Promayon at imag.fr
- Date : $Date: 2008-02-20 18:08:02 +0100 (Wed, 20 Feb 2008) $
- Version : $Revision: 2267 $
- ***************************************************************************/
-
-/***************************************************************************
- * *
- * This program is free software; you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation; either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- ***************************************************************************/
-
-#include "PhysicalModelIO.h"
-#include "</xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties.h"
-
-//--------------- Constructor -------------
-void </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties::init() {
- </xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>StructuralComponentProperties::init();
- </xsl:text>
- </xsl:if>
-
- <xsl:for-each select="cp:property">
- <xsl:value-of select="@name"/>
- <xsl:text> = </xsl:text>
- <xsl:choose>
- <!-- use given default value -->
- <xsl:when test="boolean(@defaultValue) and contains(@type,'char')">
- <xsl:text>'</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>'</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue) and contains(@type,'string')">
- <xsl:text>"</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>"</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue)">
- <xsl:value-of select="@defaultValue"/>
- </xsl:when>
- <xsl:when test="@type='bool'">
- <xsl:text>false</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'char')">
- <xsl:text>'\0'</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'int')">
- <xsl:text>0</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'string')">
- <xsl:text>""</xsl:text>
- </xsl:when>
- <xsl:otherwise>
- <xsl:text>0.0</xsl:text>
- </xsl:otherwise>
- </xsl:choose>
- <xsl:text>;
- </xsl:text>
- </xsl:for-each>
-
-
-<xsl:text>
-}
-
-//--------------- destructor --------------
-</xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties::~</xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties() {
-}
-
-// --------------- xmlPrint ---------------
-void </xsl:text>
- <xsl:value-of select="$class"/>
- <xsl:text>Properties::xmlPrint(std::ostream &o) {
-
- // beginning of the atom properties
- </xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>// need to cast due to multiple inheritance lattice
- BasicCellProperties::</xsl:text>
- </xsl:if>
- <xsl:text>beginXML(o);
-
- // print all fields and their values
- for(std::map<std::string, std::string>::iterator it = fields.begin(); it!=fields.end() ; it++)
- o << " " << (*it).first << "=\"" << (*it).second << "\" ";
-
- // print the custom properties only if different than default value
-</xsl:text>
-
- <xsl:for-each select="cp:property">
- <xsl:text> if (</xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text> != </xsl:text>
- <xsl:choose>
- <xsl:when test="boolean(@defaultValue) and contains(@type,'char')">
- <xsl:text>'</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>'</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue) and contains(@type,'string')">
- <xsl:text>"</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>"</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue)">
- <xsl:value-of select="@defaultValue"/>
- </xsl:when>
- <xsl:when test="@type='bool'">
- <xsl:text>false</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'char')">
- <xsl:text>'\0'</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'int')">
- <xsl:text>0</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'string')">
- <xsl:text>""</xsl:text>
- </xsl:when>
- <xsl:otherwise>
- <xsl:text>0.0</xsl:text>
- </xsl:otherwise>
- </xsl:choose>
- <xsl:text>) {
- o << " </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text>=\"" << </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text> << "\" ";
- }
-</xsl:text>
- </xsl:for-each>
-
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text> // inherited properties
-</xsl:text>
- <xsl:for-each select="../cp:structuralComponentProperties/cp:property">
- <xsl:text> if (</xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text> != </xsl:text>
- <xsl:choose>
- <xsl:when test="boolean(@defaultValue) and contains(@type,'char')">
- <xsl:text>'</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>'</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue) and contains(@type,'string')">
- <xsl:text>"</xsl:text><xsl:value-of select="@defaultValue"/><xsl:text>"</xsl:text>
- </xsl:when>
- <xsl:when test="boolean(@defaultValue)">
- <xsl:value-of select="@defaultValue"/>
- </xsl:when>
- <xsl:when test="@type='bool'">
- <xsl:text>false</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'char')">
- <xsl:text>'\0'</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'int')">
- <xsl:text>0</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'string')">
- <xsl:text>""</xsl:text>
- </xsl:when>
- <xsl:otherwise>
- <xsl:text>0.0</xsl:text>
- </xsl:otherwise>
- </xsl:choose>
- <xsl:text>) {
- o << " </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text>=\"" << </xsl:text>
- <xsl:value-of select="@name"/>
- <xsl:text> << "\" ";
- }
-</xsl:text>
- </xsl:for-each>
- </xsl:if>
- <xsl:text>
- // end of the properties
- </xsl:text>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text>// need to cast due to multiple inheritance lattice
- BasicCellProperties::</xsl:text>
- </xsl:if>
- <xsl:text>endXML(o);
-}
-
-</xsl:text>
- </xsl:template>
-
-
-
- <xsl:template name="xmlHandler">
- <xsl:param name="inherits"/>
-
- <xsl:document href="src/XMLPhysicalPropertiesHandler.cpp" method="text">
- <xsl:text>/***************************************************************************
- XMLPhysicalPropertiesHandler.cpp - Specific properties XML handler
- -------------------
-</xsl:text>
- <xsl:call-template name="currentDate"/>
- <xsl:text>
- copyright : (C) 2001-</xsl:text>
- <xsl:value-of select="date:year($now)"/>
- <xsl:text> TIMC (E. Promayon, M. Chabanas)
- email : Emmanuel.Promayon at imag.fr
- Date : $Date: 2008-02-20 18:08:02 +0100 (Wed, 20 Feb 2008) $
- Version : $Revision: 2267 $
- ***************************************************************************/
-
-/***************************************************************************
- * *
- * This program is free software; you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation; either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- ***************************************************************************/
-
-#include "XMLPhysicalModelHandler.h"
-#include "Atom.h"
-#include "AtomProperties.h"
-#include "Cell.h"
-#include "CellProperties.h"
-#include "StructuralComponent.h"
-#include "StructuralComponentProperties.h"
-
-// Read from XML. These methods are automatcially called by the PhysicalModel XML handler
-// Four methods can be used to get xml attribute value:
-// std::string getStringValue(const char *);
-// int getIntValue(const char *);
-// float getFloatValue(const char *);
-// double getDoubleValue(const char *);
-
-// atoms
-void XMLPhysicalModelHandler::processAtomProperties(Atom *ptr) {
-</xsl:text>
-
- <xsl:call-template name="getXMLProperties">
- <xsl:with-param name="properties" select="//cp:atomProperties"/>
- <xsl:with-param name="startAt">0</xsl:with-param>
- </xsl:call-template>
-
- <xsl:text>}
-
-// cell
-void XMLPhysicalModelHandler::processCellProperties(Cell *ptr) {
-</xsl:text>
-
- <xsl:call-template name="getXMLProperties">
- <xsl:with-param name="properties" select="//cp:cellProperties"/>
- <xsl:with-param name="startAt">0</xsl:with-param>
- </xsl:call-template>
- <xsl:if test="$inherits='true' or $inherits='1'">
- <xsl:text> // inherited properties
-</xsl:text>
- <xsl:call-template name="getXMLProperties">
- <xsl:with-param name="properties" select="//cp:structuralComponentProperties"/>
- <xsl:with-param name="startAt" select="count(//cp:cellProperties/cp:property)"/>
- </xsl:call-template>
- </xsl:if>
-
- <xsl:text>
-}
-
-// structural component
-void XMLPhysicalModelHandler::processStructuralComponentProperties(StructuralComponent *ptr) {
-</xsl:text>
-
- <xsl:call-template name="getXMLProperties">
- <xsl:with-param name="properties" select="//cp:structuralComponentProperties"/>
- <xsl:with-param name="startAt">0</xsl:with-param>
- </xsl:call-template>
- <xsl:text>}
-
-</xsl:text>
-
- </xsl:document>
- </xsl:template>
-
-
- <xsl:template name="getXMLProperties">
- <xsl:param name="properties"/>
- <xsl:param name="startAt"/>
-
- <xsl:for-each select="$properties/cp:property">
- <!-- property nr -->
- <xsl:variable name="varName">
- <xsl:text>propValue</xsl:text><xsl:value-of select="position() + $startAt"/>
- </xsl:variable>
- <!-- transform the property name first letter in uppercase -->
- <xsl:variable name="upperName">
- <xsl:value-of select="concat(translate(substring(@name,1,1), $lowerCase, $upperCase), substring(@name,2))"/>
- </xsl:variable>
-
- <xsl:text> </xsl:text>
- <xsl:value-of select="@type"/>
- <xsl:text> </xsl:text>
- <xsl:value-of select="$varName"/>
- <xsl:text>;
- </xsl:text>
- <xsl:value-of select="$varName"/>
- <xsl:text> = </xsl:text>
- <xsl:choose>
- <xsl:when test="@type='bool'">
- <xsl:text>getBoolValue("</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'char')">
- <xsl:text>getCharValue("</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'int')">
- <xsl:text>getIntValue("</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'string')">
- <xsl:text>getStringValue("</xsl:text>
- </xsl:when>
- <xsl:when test="contains(@type,'double')">
- <xsl:text>getDoubleValue("</xsl:text>
- </xsl:when>
- <xsl:otherwise>
- <xsl:text>getFloatValue("</xsl:text>
- </xsl:otherwise>
- </xsl:choose>
- <xsl:value-of select="@name"/>
- <xsl:text>");
- if (noProblem())
- ptr->getProperties()->set</xsl:text>
- <xsl:value-of select="$upperName"/>
- <xsl:text>(</xsl:text>
- <xsl:value-of select="$varName"/>
- <xsl:text>);
-
-</xsl:text>
- </xsl:for-each>
-
- </xsl:template>
-
-
-</xsl:stylesheet>
diff --git a/modeling/libraries/pml/PhysicalPropertiesCustomizer/example.xml b/modeling/libraries/pml/PhysicalPropertiesCustomizer/example.xml
deleted file mode 100644
index 82f437c..0000000
--- a/modeling/libraries/pml/PhysicalPropertiesCustomizer/example.xml
+++ /dev/null
@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Document : example.xml
- Created on : 02 March 2004, 15:44
- Author : promayon
- Description:
- Small example of custom properties definition.
--->
-
-<physicalProperties xmlns='http://www-timc.imag.fr/customPhysicalProperties'
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/customPhysicalProperties ./customPhysicalProperties.xsd'>
-
- <atomProperties>
- <property name="atomIntProp" type="int" defaultValue="10"/>
- <property name="atomStringProp" type="std::string" defaultValue="no name"/>
- <property name="aToMdOuBlEpRoP" type="double"/> <!-- strange property name, see AtomProperty.h for results -->
- <property name="AtomUIntProp" type="unsigned int"/> <!-- another kind of mess up -->
- </atomProperties>
-
- <cellProperties inherits="true"> <!-- structural component properties can be used as well on Cells -->
- <property name="cellFloatProp" type="float"/>
- <property name="cellIntProp" type="int"/>
- </cellProperties>
-
- <structuralComponentProperties>
- <property name="scBoolProp" type="bool"/>
- <property name="scCharProp" type="char" defaultValue="n"/>
- </structuralComponentProperties>
-
-</physicalProperties>
diff --git a/modeling/libraries/pml/PhysicalPropertiesCustomizer/transform.sh b/modeling/libraries/pml/PhysicalPropertiesCustomizer/transform.sh
deleted file mode 100755
index eec02a6..0000000
--- a/modeling/libraries/pml/PhysicalPropertiesCustomizer/transform.sh
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-<<ENDCOMMENT >/dev/null
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-ENDCOMMENT
-
-rm -f src/*.h src/*.cpp
-xsltproc customPhysicalProperties.xsl $1
-echo "------"
-#more AtomProperties.cpp
diff --git a/modeling/libraries/pml/Properties.cpp b/modeling/libraries/pml/Properties.cpp
index 862edcf..30c2a35 100644
--- a/modeling/libraries/pml/Properties.cpp
+++ b/modeling/libraries/pml/Properties.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,6 +25,11 @@
#include "Properties.h"
+// XSD / XercesC stuffs
+#include <xercesc/util/XercesDefs.hpp>
+#include <xercesc/dom/DOMAttr.hpp>
+#include <xercesc/util/XMLString.hpp>
+
// ---------------- constructor -----------------
Properties::Properties(const std::string n) {
name = n;
@@ -41,19 +46,25 @@ Properties::~Properties() {
}
// ---------------- domToFields -----------------
-void Properties::domToFields(xmlNodePtr node) {
- xmlAttr * attrs = node->properties;
+void Properties::xmlToFields(xsd::cxx::tree::attribute_set<char> attrs) {
- while (attrs) {
- const xmlChar * pname = attrs->name;
- xmlChar * pval = attrs->children->content;
+ for(xsd::cxx::tree::attribute_set<char>::iterator i = attrs.begin(); i != attrs.end(); i++) {
+ xercesc::DOMAttr& unknownAttr = (*i);
+ std::string unknownAttrName, unknownAttrValue;
+ char* buffer;
- if (pname && pval) {
- std::pair<std::string, std::string> attr(std::string((char*)pname), std::string((char*)pval));
- fields.insert(attr);
- }
+ // use transcoding util to transform the XML name, value from XMLString to std::string
+ // name
+ buffer = xercesc::XMLString::transcode(unknownAttr.getName());
+ unknownAttrName = buffer;
+ xercesc::XMLString::release(&buffer);
+ // value
+ buffer = xercesc::XMLString::transcode(unknownAttr.getValue());
+ unknownAttrValue = buffer;
+ xercesc::XMLString::release(&buffer);
- attrs = attrs->next;
+ std::pair<std::string, std::string> attr(unknownAttrName, unknownAttrValue);
+ this->fields.insert(attr);
}
}
diff --git a/modeling/libraries/pml/Properties.h b/modeling/libraries/pml/Properties.h
index c7fd782..41daa3f 100644
--- a/modeling/libraries/pml/Properties.h
+++ b/modeling/libraries/pml/Properties.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,13 +26,15 @@
#ifndef PROPERTIES_H
#define PROPERTIES_H
-#include <libxml/tree.h>
-//#include <libxml/parser.h>
-
#include "PhysicalModelIO.h"
#include <string>
#include <sstream>
#include <map>
+#include <cstdlib>
+
+// XSD include
+#include <xsd/cxx/tree/containers-wildcard.hxx>
+
class PhysicalModel;
/**
* @ingroup group_cepmodeling_libraries_pml
@@ -81,7 +83,7 @@ public:
/**@name Field methods (manages any custom fields) */
//@{
/// convert the xml node parameters to data fields
- void domToFields(xmlNodePtr node);
+ void xmlToFields(xsd::cxx::tree::attribute_set<char> attrs);
/// get the number of extra fields found in the PML
unsigned int numberOfFields() const;
@@ -153,7 +155,7 @@ inline int Properties::getInt(std::string attName) const {
std::map<std::string, std::string>::const_iterator it = fields.find(attName);
if (it != fields.end())
- return atoi( it->second.c_str());
+ return std::atoi( it->second.c_str());
else
return 0;
}
diff --git a/modeling/libraries/pml/RenderingMode.cpp b/modeling/libraries/pml/RenderingMode.cpp
index 73ee755..00da700 100644
--- a/modeling/libraries/pml/RenderingMode.cpp
+++ b/modeling/libraries/pml/RenderingMode.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/RenderingMode.h b/modeling/libraries/pml/RenderingMode.h
index 6d452d5..ccbd3bb 100644
--- a/modeling/libraries/pml/RenderingMode.h
+++ b/modeling/libraries/pml/RenderingMode.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/StructuralComponent.cpp b/modeling/libraries/pml/StructuralComponent.cpp
index c148a72..d2d0750 100644
--- a/modeling/libraries/pml/StructuralComponent.cpp
+++ b/modeling/libraries/pml/StructuralComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,9 @@
#include "Atom.h"
#include <RenderingMode.h>
+// pmlschema includes
+#include <StructuralComponent.hxx>
+
// ------------------ constructors ---------------------
StructuralComponent::StructuralComponent(PhysicalModel *p) : Component(p) {
// delete the properties that has just been instanciated by
@@ -41,13 +44,16 @@ StructuralComponent::StructuralComponent(PhysicalModel *p) : Component(p) {
atomList = NULL;
}
-StructuralComponent::StructuralComponent(PhysicalModel *p, xmlNodePtr node) : Component(p) {
+StructuralComponent::StructuralComponent(PhysicalModel *p, physicalModel::StructuralComponent xmlSC) : Component(p) {
// delete the properties that has just been instanciated by
// the Component(..) constructor
deleteProperties();
// create a new proper one
- properties = new StructuralComponentProperties(p, node);
+ properties = new StructuralComponentProperties(p, xmlSC);
+
+ if(xmlSC.nrOfStructures().present())
+ this->plannedNumberOfStructures(xmlSC.nrOfStructures().get().value());
atomList = NULL;
}
@@ -144,7 +150,7 @@ void StructuralComponent::setVisible(const RenderingMode::Mode mode, const bool
// --------------- xmlPrint ---------------
void StructuralComponent::xmlPrint(std::ostream &o) const {
if (getNumberOfStructures()>0) {
- o << "<structuralComponent ";
+ o << "<structuralComponent";
// ...the properties...
((StructuralComponentProperties *)properties)->xmlPrint(o);
@@ -156,7 +162,7 @@ void StructuralComponent::xmlPrint(std::ostream &o) const {
o << "<color r=\"" << ((StructuralComponentProperties *)properties)->getRed();
o << "\" g=\"" << ((StructuralComponentProperties *)properties)->getGreen();
o << "\" b=\"" << ((StructuralComponentProperties *)properties)->getBlue();
- o << "\" a=\"" << ((StructuralComponentProperties *)properties)->getAlpha() << "\" />" << std::endl;
+ o << "\" a=\"" << ((StructuralComponentProperties *)properties)->getAlpha() << "\"/>" << std::endl;
}
// optimize the memory allocation for reading
diff --git a/modeling/libraries/pml/StructuralComponent.h b/modeling/libraries/pml/StructuralComponent.h
index 0fad3d6..2c23ec7 100644
--- a/modeling/libraries/pml/StructuralComponent.h
+++ b/modeling/libraries/pml/StructuralComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,9 +35,13 @@ class Object3D;
#include "StructuralComponentProperties.h"
// other includes
-#include <vector>
#include <algorithm> // for the remove
#include <string>
+
+//pmlschema forward declarations
+namespace physicalModel {
+class StructuralComponent;
+}
/**
* @ingroup group_cepmodeling_libraries_pml
*
@@ -52,7 +56,7 @@ public:
StructuralComponent(PhysicalModel *);
/** constructor from xml node: try to read and get the parmaters from xml */
- StructuralComponent(PhysicalModel *, xmlNodePtr);
+ StructuralComponent(PhysicalModel *p, physicalModel::StructuralComponent xmlSC);
/** constructor that allows one to name the structure.
*/
@@ -65,8 +69,8 @@ public:
unsigned int getNumberOfStructures() const;
/**
- * Add a Structure in the list (and tells the structure to remove this structural
- * component from its list).
+ * Add a Structure in the list (and tells the structure to add this structural
+ * component in its list).
* @param s the structure to add
* @param check (default value: true) tell if the method should call isCompatible(Structure *s) before inserting s
*/
@@ -74,8 +78,8 @@ public:
/**
* Add a Structure in the list, only if it is not already in
- * (and tells the structure to remove this structural
- * component from its list).
+ * (and in this case tells the structure to add this structural
+ * component to its list).
* @param s the structure to add
* @return a boolean telling if s was added or not
*/
@@ -176,7 +180,7 @@ public:
* a structural component is either a list of cells or atoms, or of nothing if it is empty
* (see enum ComposedBy).
*/
- ComposedBy composedBy();
+ virtual ComposedBy composedBy();
/** return true if the given structure is compatible with what composes this structural component.
* E.g. if the structural is made of cell, and the structure is a cell.
diff --git a/modeling/libraries/pml/StructuralComponentProperties.cpp b/modeling/libraries/pml/StructuralComponentProperties.cpp
new file mode 100644
index 0000000..a5f83c2
--- /dev/null
+++ b/modeling/libraries/pml/StructuralComponentProperties.cpp
@@ -0,0 +1,89 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "StructuralComponentProperties.h"
+//pmlschema includes
+#include <StructuralComponent.hxx>
+
+StructuralComponentProperties::StructuralComponentProperties(PhysicalModel * p, physicalModel::StructuralComponent xmlSC) : Properties(p) {
+ alloc();
+
+ setName(xmlSC.name().get());
+
+ if (xmlSC.mode().present()) {
+ if (!xmlSC.mode().get().compare("NONE")) {
+ setMode(RenderingMode::NONE);
+ } else if (!xmlSC.mode().get().compare("POINTS")) {
+ setMode(RenderingMode::POINTS);
+ } else if (!xmlSC.mode().get().compare("POINTS_AND_SURFACE")) {
+ setMode(RenderingMode::POINTS_AND_SURFACE);
+ } else if (!xmlSC.mode().get().compare("SURFACE")) {
+ setMode(RenderingMode::SURFACE);
+ } else if (!xmlSC.mode().get().compare("WIREFRAME")) {
+ setMode(RenderingMode::WIREFRAME);
+ } else if (!xmlSC.mode().get().compare("WIREFRAME_AND_POINTS")) {
+ setMode(RenderingMode::WIREFRAME_AND_POINTS);
+ } else if (!xmlSC.mode().get().compare("WIREFRAME_AND_SURFACE")) {
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ } else if (!xmlSC.mode().get().compare("WIREFRAME_AND_SURFACE_AND_POINTS")) {
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE_AND_POINTS);
+ } else {
+ std::cerr << "BasicSCProperties::BasicSCProperties: Error parsing structural component rendering mode (" << xmlSC.mode().get() << ")" << std::endl;
+ }
+ } else {
+ setMode(RenderingMode::NONE);
+ }
+
+ if (xmlSC.color().present()) {
+ setRGBA(xmlSC.color().get().r(), xmlSC.color().get().g(), xmlSC.color().get().b(), xmlSC.color().get().a());
+ } else {
+ setColor(DEFAULT);
+ }
+
+ // unkown attributes
+ xmlToFields(xmlSC.any_attribute());
+
+}
+
+// --------------- xmlPrint ---------------
+void StructuralComponentProperties::xmlPrint(std::ostream & o) {
+
+ // beginning of the SC properties
+ // print the name if there is one
+ if (getName() != "") {
+ o << " name=\"" << getName().c_str() << "\"";
+ }
+
+ // the mode property (if different than default)
+ if (mode.getMode() != RenderingMode::NONE) {
+ o << " mode=\"" << mode.getModeString() << "\"";
+ }
+
+
+ // print all fields
+ for (std::map<std::string, std::string>::iterator it = fields.begin(); it != fields.end() ; it++) {
+ o << " " << (*it).first << "=\"" << (*it).second << "\"";
+ }
+}
diff --git a/modeling/libraries/pml/StructuralComponentProperties.h b/modeling/libraries/pml/StructuralComponentProperties.h
new file mode 100644
index 0000000..5a74b71
--- /dev/null
+++ b/modeling/libraries/pml/StructuralComponentProperties.h
@@ -0,0 +1,283 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef STRUCTURALCOMPONENTPROPERTIES_H
+#define STRUCTURALCOMPONENTPROPERTIES_H
+
+//pmlschema forward declarations
+namespace physicalModel {
+class StructuralComponent;
+}
+
+#include "Properties.h"
+#include "RenderingMode.h"
+
+/**
+ * @ingroup group_cepmodeling_libraries_pml
+ *
+ * @brief
+ * A class that manages the structural component properties.
+ *
+ **/
+class StructuralComponentProperties : public Properties {
+
+public:
+ /** Default color settings
+ */
+ enum Color {
+ DEFAULT, /**< no color given, decided by the GUI */
+ RED, /**< full complete flashy red */
+ GREEN, /**< full complete flashy green */
+ BLUE, /**< full complete flashy blue */
+ GRAY, /**< classic gray */
+ OTHER /**< color is defined using RGBA */
+ };
+
+ /** use a Color constant to set the color */
+ StructuralComponentProperties(PhysicalModel *p, const Color c) : Properties(p) {
+ alloc();
+ setColor(c);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ StructuralComponentProperties(PhysicalModel * p, physicalModel::StructuralComponent xmlSC);
+ StructuralComponentProperties(PhysicalModel *p, const Color c, const std::string n) : Properties(p, n) {
+ alloc();
+ setColor(c);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ /** use a double[3] array to set the color */
+ StructuralComponentProperties(PhysicalModel *p, const double * rgb) : Properties(p) {
+ alloc();
+ setRGB(rgb);
+ setAlpha(1.0);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ StructuralComponentProperties(PhysicalModel *p, const double * rgb, const std::string n) : Properties(p, n) {
+ alloc();
+ setRGB(rgb);
+ setAlpha(1.0);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ /** use 3 floats to set the color */
+ StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b) : Properties(p) {
+ alloc();
+ setRGB(r, g, b);
+ setAlpha(1.0);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ StructuralComponentProperties(PhysicalModel *p, const double r, const double g, const double b, const std::string n) : Properties(p, n) {
+ alloc();
+ setRGB(r, g, b);
+ setAlpha(1.0);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ /** defaultcolor is gray */
+ StructuralComponentProperties(PhysicalModel *p) : Properties(p) {
+ alloc();
+ setColor(DEFAULT);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ }
+
+ ;
+ StructuralComponentProperties(PhysicalModel *p, const std::string n) : Properties(p, n) {
+ alloc();
+ setColor(DEFAULT);
+ setMode(RenderingMode::WIREFRAME_AND_SURFACE);
+ };
+
+ virtual ~StructuralComponentProperties() {
+ delete [] colorRGBA;
+ };
+
+ double getRed() const;
+ double getGreen() const;
+ double getBlue() const;
+ double getAlpha() const;
+ double * getRGB() const;
+ double * getRGBA() const;
+ Color getColor() const;
+
+ void setRed(const double r);
+ void setGreen(const double g);
+ void setBlue(const double b);
+ void setAlpha(const double a);
+ void setRGB(const double * rgb);
+ void setRGB(const double r, const double g, const double b);
+ void setRGBA(const double r, const double g, const double b, const double a);
+ void setRGBA(const double * rgba);
+ void setColor(Color c);
+
+ void setMode(const RenderingMode::Mode);
+ RenderingMode::Mode getMode() const;
+ bool isVisible(const RenderingMode::Mode mode) const;
+ void setVisible(const RenderingMode::Mode, const bool);
+
+ /// get the string equivalent to the enum rendering mode
+ std::string getModeString() const;
+
+ /** print to an output stream in "pseaudo" XML format.
+ * This method is to be implemented in the subclass (StructuralComponentProperties).
+ * It HAS to call the beginXML() at the beginning and the endXML() at the end.
+ */
+ virtual void xmlPrint(std::ostream &);
+
+private:
+ double *colorRGBA;
+ void alloc();
+ Color color;
+ RenderingMode mode;
+};
+
+// inlines
+inline double StructuralComponentProperties::getRed() const {
+ return colorRGBA[0];
+}
+
+inline double StructuralComponentProperties::getGreen() const {
+ return colorRGBA[1];
+}
+
+inline double StructuralComponentProperties::getBlue() const {
+ return colorRGBA[2];
+}
+
+inline double StructuralComponentProperties::getAlpha() const {
+ return colorRGBA[3];
+}
+
+inline double * StructuralComponentProperties::getRGB() const {
+ return colorRGBA;
+}
+
+inline double * StructuralComponentProperties::getRGBA() const {
+ return colorRGBA;
+}
+
+inline StructuralComponentProperties::Color StructuralComponentProperties::getColor() const {
+ return color;
+}
+
+// TODO : a test for the color, if a composant is changed it might still be something we know
+// so color = OTHER is a bit presumptuous
+inline void StructuralComponentProperties::setRed(const double r) {
+ colorRGBA[0] = r;
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setGreen(const double g) {
+ colorRGBA[1] = g;
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setBlue(const double b) {
+ colorRGBA[2] = b;
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setAlpha(const double a) {
+ colorRGBA[3] = a;
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setRGB(const double r, const double g, const double b) {
+ setRed(r);
+ setGreen(g);
+ setBlue(b);
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setRGB(const double * rgb) {
+ setRGB(rgb[0], rgb[1], rgb[2]);
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setRGBA(const double r, const double g, const double b, const double a) {
+ setRed(r);
+ setGreen(g);
+ setBlue(b);
+ setAlpha(a);
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setRGBA(const double *rgba) {
+ setRGBA(rgba[0], rgba[1], rgba[2], rgba[3]);
+ color = OTHER;
+}
+
+inline void StructuralComponentProperties::setColor(Color c) {
+ switch (c) {
+
+ case RED:
+ setRGBA(1.0, 0.0, 0.0, 1.0);
+ break;
+
+ case GREEN:
+ setRGBA(0.0, 1.0, 0.0, 1.0);
+ break;
+
+ case BLUE:
+ setRGBA(0.0, 0.0, 1.0, 1.0);
+ break;
+
+ default: // DEFAULT:or GRAY:or OTHER
+ setRGBA(0.8, 0.8, 0.8, 1.0);
+ break;
+ }
+
+ color = c;
+}
+
+inline void StructuralComponentProperties::alloc() {
+ colorRGBA = new double[4];
+}
+
+inline void StructuralComponentProperties::setMode(const RenderingMode::Mode m) {
+ mode.setMode(m);
+}
+
+inline RenderingMode::Mode StructuralComponentProperties::getMode() const {
+ return mode.getMode();
+}
+
+inline std::string StructuralComponentProperties::getModeString() const {
+ return mode.getModeString();
+}
+
+inline bool StructuralComponentProperties::isVisible(const RenderingMode::Mode m) const {
+ return mode.isVisible(m);
+}
+
+inline void StructuralComponentProperties::setVisible(const RenderingMode::Mode m, const bool b) {
+ mode.setVisible(m, b);
+}
+
+
+#endif //STRUCTURALCOMPONENTPROPERTIES_H
diff --git a/modeling/libraries/pml/Structure.cpp b/modeling/libraries/pml/Structure.cpp
index 42a3f22..a94e3b3 100644
--- a/modeling/libraries/pml/Structure.cpp
+++ b/modeling/libraries/pml/Structure.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,6 +33,7 @@ unsigned int Structure::getIndex() const {
bool Structure::setIndex(const unsigned int newIndex) {
Structure::properties->setIndex(newIndex);
+ hasIndex = true;
return true;
}
diff --git a/modeling/libraries/pml/Structure.h b/modeling/libraries/pml/Structure.h
index 4f34a66..92819da 100644
--- a/modeling/libraries/pml/Structure.h
+++ b/modeling/libraries/pml/Structure.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,7 +43,9 @@ class StructuralComponent;
class Structure {
public:
/** Base constructor */
- Structure() : properties(NULL) {}
+ Structure() : properties(NULL) {
+ hasIndex = false;
+ }
/** Virtual destructor needed here as this is an abstract class (pure virtual) */
virtual ~Structure() {}
@@ -55,6 +57,9 @@ public:
/// pure virtual method, implemented in the child-class
virtual bool isInstanceOf(const char *) const = 0;
+ /// indicate if the Structure has an index (which is not the case all the time)
+ bool hasIndex;
+
/// get the structure unique index (stored in its property)
unsigned int getIndex() const;
@@ -79,7 +84,7 @@ public:
StructuralComponent * getStructuralComponent(unsigned int i);
/// add a particular StructuralComponent in the list
- void addStructuralComponent(StructuralComponent *);
+ virtual void addStructuralComponent(StructuralComponent *);
/// remove a particular StructuralComponent from the list
void removeStructuralComponent(StructuralComponent *);
diff --git a/modeling/libraries/pml/StructureProperties.cpp b/modeling/libraries/pml/StructureProperties.cpp
index a4fcfb5..51b4a9b 100644
--- a/modeling/libraries/pml/StructureProperties.cpp
+++ b/modeling/libraries/pml/StructureProperties.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -102,7 +102,7 @@ std::string StructureProperties::toString(const StructureProperties::GeometricTy
// ------------ xmlPrint -------------------
void StructureProperties::xmlPrint(std::ostream & o) const {
- o << "<StructureProperties index=\"" << index << "\">" << std::endl;
+ o << "<StructureProperties index=\"" << index << "\">" << std::endl;
o << "<type = \"" << toString(type) << "\"/>" << std::endl;
o << "</StructureProperties>" << std::endl;
}
diff --git a/modeling/libraries/pml/StructureProperties.h b/modeling/libraries/pml/StructureProperties.h
index 4036d06..3362534 100644
--- a/modeling/libraries/pml/StructureProperties.h
+++ b/modeling/libraries/pml/StructureProperties.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/api-doc/CompileLatex.pl b/modeling/libraries/pml/api-doc/CompileLatex.pl
index fd8e75d..786086e 100755
--- a/modeling/libraries/pml/api-doc/CompileLatex.pl
+++ b/modeling/libraries/pml/api-doc/CompileLatex.pl
@@ -6,7 +6,7 @@ q^
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/modeling/libraries/pml/schema/physicalModel.xsd b/modeling/libraries/pml/schema/physicalModel.xsd
deleted file mode 100644
index 305ed1d..0000000
--- a/modeling/libraries/pml/schema/physicalModel.xsd
+++ /dev/null
@@ -1,350 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--
- Document : physicalModel.xsd
- Created on : 19 February 2002, 11:35
- Author : Emmanuel Promayon
- Description:
- Schema for validating physical model documents.
- Revision : $Id: physicalModel.xsd 2220 2004-03-16 19:59:43Z promayon $
--->
-
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema"
- targetNamespace="http://www-timc.imag.fr/physicalModel"
- xmlns="http://www-timc.imag.fr/physicalModel"
- elementFormDefault="qualified"
- version="0.2">
-
- <xsd:element name="physicalModel">
- <xsd:annotation>
- <xsd:documentation>
- The root element for the document describing a physical model.
-
- It is here specified that atom index must be unique and that atomRef
- must be reference to existante atom index.
- </xsd:documentation>
- </xsd:annotation>
-
- <xsd:complexType>
- <xsd:annotation>
- <xsd:documentation>
- physical model is a generic representation for 3D physical model
- (FEM, spring mass network, phymul...).
- Attributes are optional. If present they are used to optimize the
- reading of the document.
- </xsd:documentation>
- </xsd:annotation>
-
- <xsd:all>
- <xsd:element name="atoms" type="Atoms"/>
- <xsd:element name="exclusiveComponents" type="ExclusiveComponent"/>
- <xsd:element name="informativeComponents" type="InformativeComponent" minOccurs="0"/>
- </xsd:all>
-
- <xsd:attribute name="name"/>
- <xsd:attribute name="nrOfAtoms" type="xsd:int"/>
- <xsd:attribute name="nrOfExclusiveComponents" type="xsd:int"/>
- <xsd:attribute name="nrOfInformativeComponents" type="xsd:int"/>
- <xsd:attribute name="nrOfCells" type="xsd:int"/>
- </xsd:complexType>
-
- <xsd:key name="UniqueAtomIndex">
- <xsd:annotation>
- <xsd:documentation>
- Define a unique key for atom index
- </xsd:documentation>
- </xsd:annotation>
- <xsd:selector xpath=".//atoms/atomProperties"/>
- <xsd:field xpath="@index"/>
- </xsd:key>
-
- <xsd:keyref name="NoUnknownAtomIndex" refer="UniqueAtomIndex">
- <xsd:annotation>
- <xsd:documentation>
- Cells have to use existing atom index
- </xsd:documentation>
- </xsd:annotation>
- <xsd:selector xpath=".//cells/atomRef"/>
- <xsd:field xpath="@index"/>
- </xsd:keyref>
-
- </xsd:element>
-
-
-
- <xsd:group name="MultiComponent">
- <xsd:sequence>
- <xsd:element name="multiComponent" type="MultiComponent"/>
- </xsd:sequence>
- </xsd:group>
-
- <xsd:group name="StructuralComponent">
- <xsd:sequence>
- <xsd:element name="structuralComponent" type="BasicStructuralComponent"/>
- </xsd:sequence>
- </xsd:group>
-
-
-
- <xsd:complexType name="Atoms">
- <xsd:annotation>
- <xsd:documentation>
- List of all the atoms. This is the only place where atoms are described.
- In the remaining of the documents, references to this atoms will have to
- be used.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="StructuralComponent"/>
- </xsd:complexType>
-
- <xsd:complexType name="ExclusiveComponent">
- <xsd:annotation>
- <xsd:documentation>
- Cells defined here are defined once and only once in this component.
- No overlapping is possible here.
- This special multi-component must contain all the cells that are really
- necessary to the definition of a model, and only those cells.
- This is the core structure of the physical model.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="MultiComponent"/>
- </xsd:complexType>
-
- <xsd:complexType name="InformativeComponent">
- <xsd:annotation>
- <xsd:documentation>
- It is used to define labeled groups or entities that are not essential for
- the model but useful for separating or manipulating a given set of
- structures.
- The informative components is optional.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:group ref="MultiComponent"/>
- </xsd:complexType>
-
-
-
- <xsd:complexType name="BasicStructuralComponent">
- <xsd:annotation>
- <xsd:documentation>
- A structural component is a group of structures.
- It is generally composed of cells, although it can be composed of atoms.
- Note that a cell can also be considered as a structural component as it is
- defined by a set of atoms.
- nrOfStructures is optional and is used for optimization.
- Attribute mode indicates what is the default 3D graphic representation.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="color" type="Color" minOccurs="0"/>
- <xsd:element name="nrOfStructures" type="NrOfStructures" minOccurs="0"/>
- <xsd:choice>
- <xsd:element name="atom" type="Atom" minOccurs="0" maxOccurs="unbounded"/>
- <xsd:element name="cell" type="Cell" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:choice>
- </xsd:sequence>
- <xsd:attribute name="name" use="required"/>
- <xsd:attribute name="mode" type="RenderingMode"/>
- <!-- adding any kind of attributes -->
- <xsd:anyAttribute namespace="##any" processContents="lax"/>
- </xsd:complexType>
-
- <xsd:complexType name="MultiComponent">
- <xsd:annotation>
- <xsd:documentation>
- A multi-level component (multi-component) consist of any number of components:
- structural components and/or multi-components.
- It is used to group entities and allow hierarchical representation and tree-like
- organization.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:choice minOccurs="0" maxOccurs="unbounded">
- <xsd:group ref="MultiComponent"/>
- <xsd:group ref="StructuralComponent"/>
- </xsd:choice>
- <xsd:attribute name="name" use="required"/>
- </xsd:complexType>
-
-
-
- <xsd:simpleType name="RenderingMode">
- <xsd:annotation>
- <xsd:documentation>
- How a 3D graphics application should try to represent the element
- </xsd:documentation>
- </xsd:annotation>
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="NONE"/>
- <xsd:enumeration value="POINTS"/>
- <xsd:enumeration value="POINTS_AND_SURFACE"/>
- <xsd:enumeration value="SURFACE"/>
- <xsd:enumeration value="WIREFRAME_AND_SURFACE"/>
- <xsd:enumeration value="WIREFRAME_AND_POINTS"/>
- <xsd:enumeration value="WIREFRAME"/>
- <xsd:enumeration value="WIREFRAME_AND_SURFACE_AND_POINTS"/>
- </xsd:restriction>
- </xsd:simpleType>
-
-
-
- <xsd:complexType name="NrOfStructures">
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="value" type="xsd:int" use="required"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
-
-
- <xsd:complexType name="Color">
- <xsd:annotation>
- <xsd:documentation>
- A color is an empty element with the description of the four color
- components (r for red, g for green, b for blue and a for alpha channel)
- </xsd:documentation>
- </xsd:annotation>
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="r" type="ColorComponent" use="required"/>
- <xsd:attribute name="g" type="ColorComponent" use="required"/>
- <xsd:attribute name="b" type="ColorComponent" use="required"/>
- <xsd:attribute name="a" type="ColorComponent" use="required"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="ColorComponent">
- <xsd:annotation>
- <xsd:documentation>
- A color component is a double value between 0.0 and 1.0
- 0.0 = component is not added to the global color
- 1.0 = full addition of the color
- </xsd:documentation>
- </xsd:annotation>
- <xsd:restriction base="xsd:double">
- <xsd:minInclusive value="0.0"/>
- <xsd:maxInclusive value="1.0"/>
- </xsd:restriction>
- </xsd:simpleType>
-
-
-
- <xsd:complexType name="Atom">
- <xsd:annotation>
- <xsd:documentation>
- Any complex 3D model has to use specified 3D positions,
- referred to in PML as atoms.
- An atom is defined by a position (i.e. 3D coordinates) and some properties.
-
- Note that atoms have to be described independently from any structure that uses
- them.
- Such a structure have to use references to the atoms id.
- For example in a FEM mesh, the elements that are defined by a given list of atoms
- will use reference to those atoms id, which will all be described separately.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="atomProperties" type="BasicAtomProperties"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="BasicAtomProperties">
- <xsd:annotation>
- <xsd:documentation>
- Default property is a unique index and the position.
- You can add properties, for example, a mass property could be its mass,
- expressed in grams, can be assigned to an atom.
- Custom atom properties are optional, e.g. in the FEM, there will be no specific
- atom properties.
-
- Derived this complex type to add your own custom properties.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
- <xsd:attribute name="x" type="xsd:double" use="required"/>
- <xsd:attribute name="y" type="xsd:double" use="required"/>
- <xsd:attribute name="z" type="xsd:double" use="required"/>
- <!-- adding any kind of attributes -->
- <xsd:anyAttribute namespace="##any" processContents="lax"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
-
-
- <xsd:complexType name="Cell">
- <xsd:annotation>
- <xsd:documentation>
- Models are usually composed by collections of cells, each cell being built with atoms.
- Cells represent geometrical polyhedron structures (triangles, hexahedrons, ...)
- present in 3D models.
-
- A cell is defined by:
- - a geometric type: triangle, quad, tetrahedra, hexahedron, line, poly-line, etc...;
- - a group of atoms used in the cell geometry; and
- - some associated properties.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:sequence>
- <xsd:element name="cellProperties" type="BasicCellProperties"/>
- <xsd:element name="color" type="Color" minOccurs="0"/>
- <xsd:element name="nrOfStructures" type="NrOfStructures" minOccurs="0"/>
- <xsd:element name="atomRef" type="AtomRef" minOccurs="1" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-
- <xsd:complexType name="BasicCellProperties">
- <xsd:annotation>
- <xsd:documentation>
- While they can be related to visualization, cell properties are mostly used to describe
- specific physical properties of an approach.
- For example, in a MSN, stiffness can be assigned to a cell representing a spring, or
- in the FEM mesh, a rheological property, such as the Young modulus, can be defined for
- a cell representing an finite element.
-
- Derived this complex type to add your own custom properties.
- </xsd:documentation>
- </xsd:annotation>
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="index" type="xsd:int"/>
- <xsd:attribute name="type" type="GeometricType" use="required"/>
- <xsd:attribute name="name" type="xsd:string"/>
- <!-- adding any kind of attributes -->
- <xsd:anyAttribute namespace="##any" processContents="lax"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
- <xsd:simpleType name="GeometricType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="ATOM"/>
- <xsd:enumeration value="TETRAHEDRON"/>
- <xsd:enumeration value="HEXAHEDRON"/>
- <xsd:enumeration value="WEDGE"/>
- <xsd:enumeration value="POLY_LINE"/>
- <xsd:enumeration value="POLY_VERTEX"/>
- <xsd:enumeration value="TRIANGLE"/>
- <xsd:enumeration value="QUAD"/>
- </xsd:restriction>
- </xsd:simpleType>
-
-
-
- <xsd:complexType name="AtomRef">
- <xsd:annotation>
- <xsd:documentation>
- Must be empty
- </xsd:documentation>
- </xsd:annotation>
- <xsd:complexContent>
- <xsd:restriction base="xsd:anyType">
- <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
- </xsd:restriction>
- </xsd:complexContent>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/modeling/libraries/pml/test/CMakeLists.txt b/modeling/libraries/pml/test/CMakeLists.txt
deleted file mode 100644
index 9fbc584..0000000
--- a/modeling/libraries/pml/test/CMakeLists.txt
+++ /dev/null
@@ -1,25 +0,0 @@
-if(NOT PACKAGING_NSIS)
- set (SRCS pmltest.cpp)
- add_executable(library-pmltest ${SRCS})
- set(PML_LIBRARIES library-pml ${LIBXML2_LIBRARIES})
- target_link_libraries(library-pmltest ${PML_LIBRARIES})
- add_dependencies(library-pmltest library-pml)
-
- #----------
- # Testing
- #----------
- # TODO build one pml file with every tests in it, use it and check that inputFilename-output-pmltest.pml is identical to inputFilename.pml
- camitk_init_test(library-pmltest)
- # should pass because lmltest run with no arguments shows usage and exit success
- camitk_add_test()
-
- # should pass because invoking lmltest with a faulty arguments results in printing
- # an "Argument error" message (and exit failure)
- camitk_add_test(EXECUTABLE_ARGS "-error" PASS_REGULAR_EXPRESSION "Argument errors: ")
-
- # should pass because reading cube4.pml should not modify it (input == output)
- if(NOT WIN32)#this test fails on windows7 VM
- camitk_add_test(EXECUTABLE_ARGS "-i ${CMAKE_CURRENT_SOURCE_DIR}/cube4.pml"
- PASS_FILE ${CMAKE_CURRENT_SOURCE_DIR}/cube4.pml )
- endif()
-endif()
diff --git a/modeling/libraries/pml/test/cube1.pml b/modeling/libraries/pml/test/cube1.pml
deleted file mode 100644
index 69f734e..0000000
--- a/modeling/libraries/pml/test/cube1.pml
+++ /dev/null
@@ -1,77 +0,0 @@
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="cube 1" nrOfAtoms="8"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="2"
- nrOfCells="1"
->
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="element list" >
-<nrOfStructures value="8"/>
-<atom>
-<atomProperties index="0" x="-5" y="5" z="-5" name="a0" />
-</atom>
-<atom>
-<atomProperties index="1" x="5" y="5" z="-5" />
-</atom>
-<atom>
-<atomProperties index="2" x="5" y="5" z="5" />
-</atom>
-<atom>
-<atomProperties index="3" x="-5" y="5" z="5" />
-</atom>
-<atom>
-<atomProperties index="4" x="-5" y="-5" z="-5" />
-</atom>
-<atom>
-<atomProperties index="5" x="5" y="-5" z="-5" />
-</atom>
-<atom>
-<atomProperties index="6" x="5" y="-5" z="5" />
-</atom>
-<atom>
-<atomProperties index="7" x="-5" y="-5" z="5" />
-</atom>
-</structuralComponent>
-</atoms>
-<!-- list of exclusive components : -->
-<exclusiveComponents>
-<multiComponent name="Exclusive components" >
-<structuralComponent name="One cubic cell" mode="WIREFRAME_AND_SURFACE" >
-<color r="0.8" g="0.8" b="0.2" a="1" />
-<nrOfStructures value="1"/>
-<cell>
-<cellProperties index="0" type="HEXAHEDRON" />
-<nrOfStructures value="8"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</exclusiveComponents>
-<!-- list of informative components : -->
-<informativeComponents>
-<multiComponent name="Informative Components" >
-<structuralComponent name="up facet" mode="SURFACE" >
-<nrOfStructures value="4"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-</structuralComponent>
-<structuralComponent name="down facet" mode="SURFACE" >
-<nrOfStructures value="4"/>
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</structuralComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/cube2.pml b/modeling/libraries/pml/test/cube2.pml
deleted file mode 100644
index 4233f55..0000000
--- a/modeling/libraries/pml/test/cube2.pml
+++ /dev/null
@@ -1,349 +0,0 @@
-<?xml version="1.0"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, Phymulob...) -->
-<!-- Created by the phymul library, E Promayon, TIMC (c) 1997-2001 - 19 Feb 2004, 19:17"-->
-<physicalModel name="cube 2" nrOfAtoms="14" nrOfCells="39"
- xmlns="http://www-timc.imag.fr/physicalModel"
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/physicalModel ../schema/physicalModel.xsd'>
-<!-- list of atoms: -->
- <atoms>
- <structuralComponent name="element list">
- <atom>
- <atomProperties index="0" x="-5" y="5" z="-5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="1" x="5" y="5" z="-5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="2" x="5" y="5" z="5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="3" x="-5" y="5" z="5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="4" x="-5" y="-5" z="-5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="5" x="5" y="-5" z="-5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="6" x="5" y="-5" z="5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="7" x="-5" y="-5" z="5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="8" x="0" y="5" z="0" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="9" x="0" y="-5" z="0" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="10" x="0" y="0" z="-5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="11" x="0" y="0" z="5" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="12" x="5" y="0" z="0" mass="100"/>
- </atom>
- <atom>
- <atomProperties index="13" x="-5" y="0" z="0" mass="100"/>
- </atom>
- </structuralComponent>
- </atoms>
-<!-- list of exclusive components : -->
- <exclusiveComponents>
- <multiComponent name="exclusive component">
- <structuralComponent name="Atoms of the elastic region">
- <color r="0.8" g="0.8" b="0.2" a="1.0"/>
- <cell>
- <cellProperties index="0" type="POLY_VERTEX" phymulType="elastic"/>
- <atomRef index="0"/>
- <atomRef index="1"/>
- <atomRef index="2"/>
- <atomRef index="3"/>
- <atomRef index="4"/>
- <atomRef index="5"/>
- <atomRef index="6"/>
- <atomRef index="7"/>
- <atomRef index="8"/>
- <atomRef index="9"/>
- <atomRef index="10"/>
- <atomRef index="11"/>
- <atomRef index="12"/>
- <atomRef index="13"/>
- </cell>
- </structuralComponent>
- </multiComponent>
- </exclusiveComponents>
-<!-- the informative components -->
- <informativeComponents>
- <multiComponent name="Phymul Informative Component">
- <structuralComponent name="Element Neighborhoods">
- <color r="0.5" g="0.5" b="0.5" a="1.0"/>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#0"/>
- <atomRef index="1"/>
- <atomRef index="10"/>
- <atomRef index="4"/>
- <atomRef index="13"/>
- <atomRef index="3"/>
- <atomRef index="8"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#1"/>
- <atomRef index="2"/>
- <atomRef index="12"/>
- <atomRef index="5"/>
- <atomRef index="10"/>
- <atomRef index="0"/>
- <atomRef index="8"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#2"/>
- <atomRef index="3"/>
- <atomRef index="11"/>
- <atomRef index="6"/>
- <atomRef index="12"/>
- <atomRef index="1"/>
- <atomRef index="8"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#3"/>
- <atomRef index="0"/>
- <atomRef index="13"/>
- <atomRef index="7"/>
- <atomRef index="11"/>
- <atomRef index="2"/>
- <atomRef index="8"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#4"/>
- <atomRef index="0"/>
- <atomRef index="10"/>
- <atomRef index="5"/>
- <atomRef index="9"/>
- <atomRef index="7"/>
- <atomRef index="13"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#5"/>
- <atomRef index="1"/>
- <atomRef index="12"/>
- <atomRef index="6"/>
- <atomRef index="9"/>
- <atomRef index="4"/>
- <atomRef index="10"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#6"/>
- <atomRef index="2"/>
- <atomRef index="11"/>
- <atomRef index="7"/>
- <atomRef index="9"/>
- <atomRef index="5"/>
- <atomRef index="12"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#7"/>
- <atomRef index="3"/>
- <atomRef index="13"/>
- <atomRef index="4"/>
- <atomRef index="9"/>
- <atomRef index="6"/>
- <atomRef index="11"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#8"/>
- <atomRef index="0"/>
- <atomRef index="3"/>
- <atomRef index="2"/>
- <atomRef index="1"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#9"/>
- <atomRef index="4"/>
- <atomRef index="5"/>
- <atomRef index="6"/>
- <atomRef index="7"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#10"/>
- <atomRef index="0"/>
- <atomRef index="1"/>
- <atomRef index="5"/>
- <atomRef index="4"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#11"/>
- <atomRef index="2"/>
- <atomRef index="3"/>
- <atomRef index="7"/>
- <atomRef index="6"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#12"/>
- <atomRef index="1"/>
- <atomRef index="2"/>
- <atomRef index="6"/>
- <atomRef index="5"/>
- </cell>
- <cell>
- <cellProperties type="POLY_VERTEX" name="E#13"/>
- <atomRef index="0"/>
- <atomRef index="4"/>
- <atomRef index="7"/>
- <atomRef index="3"/>
- </cell>
- </structuralComponent>
- <structuralComponent name="Facet of region #0 (cubeMaud)" mode="WIREFRAME_AND_SURFACE">
- <color r="1.0" g="0.89" b="0.53" a="1.0"/>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="1"/>
- <atomRef index="10"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="10"/>
- <atomRef index="4"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="4"/>
- <atomRef index="13"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="13"/>
- <atomRef index="3"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="3"/>
- <atomRef index="8"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="0"/>
- <atomRef index="8"/>
- <atomRef index="1"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="1"/>
- <atomRef index="2"/>
- <atomRef index="12"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="1"/>
- <atomRef index="12"/>
- <atomRef index="5"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="1"/>
- <atomRef index="5"/>
- <atomRef index="10"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="1"/>
- <atomRef index="8"/>
- <atomRef index="2"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="2"/>
- <atomRef index="3"/>
- <atomRef index="11"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="2"/>
- <atomRef index="11"/>
- <atomRef index="6"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="2"/>
- <atomRef index="6"/>
- <atomRef index="12"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="2"/>
- <atomRef index="8"/>
- <atomRef index="3"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="3"/>
- <atomRef index="13"/>
- <atomRef index="7"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="3"/>
- <atomRef index="7"/>
- <atomRef index="11"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="4"/>
- <atomRef index="10"/>
- <atomRef index="5"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="4"/>
- <atomRef index="5"/>
- <atomRef index="9"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="4"/>
- <atomRef index="9"/>
- <atomRef index="7"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="4"/>
- <atomRef index="7"/>
- <atomRef index="13"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="5"/>
- <atomRef index="12"/>
- <atomRef index="6"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="5"/>
- <atomRef index="6"/>
- <atomRef index="9"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="6"/>
- <atomRef index="11"/>
- <atomRef index="7"/>
- </cell>
- <cell>
- <cellProperties type="TRIANGLE"/>
- <atomRef index="6"/>
- <atomRef index="7"/>
- <atomRef index="9"/>
- </cell>
- </structuralComponent>
- </multiComponent>
- </informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/cube3.pml b/modeling/libraries/pml/test/cube3.pml
deleted file mode 100644
index 338825f..0000000
--- a/modeling/libraries/pml/test/cube3.pml
+++ /dev/null
@@ -1,130 +0,0 @@
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="simple cubic element" nrOfAtoms="8"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="2"
- nrOfCells="7"
->
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="Atoms" mass="0" viscosityW="0" externW="0" >
-<color r="0.972549" g="0.788235" b="1" a="1" />
-<nrOfStructures value="8"/>
-<atom>
-<atomProperties index="0" x="-0.05" y="0.05" z="-0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="1" x="0.05" y="0.05" z="-0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="2" x="0.05" y="0.05" z="0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="3" x="-0.05" y="0.05" z="0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="4" x="-0.05" y="-0.05" z="-0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="5" x="0.05" y="-0.05" z="-0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="6" x="0.05" y="-0.05" z="0.05" mass="1" />
-</atom>
-<atom>
-<atomProperties index="7" x="-0.05" y="-0.05" z="0.05" mass="1" />
-</atom>
-</structuralComponent>
-</atoms>
-<!-- list of exclusive components : -->
-<exclusiveComponents>
-<multiComponent name="Exclusive Component" >
-<structuralComponent name="Element list" mass="0" viscosityW="0" externW="0" >
-<color r="0.972549" g="0.788235" b="1" a="1" />
-<nrOfStructures value="1"/>
-<cell>
-<cellProperties index="0" type="POLY_VERTEX" mass="0" viscosityW="0" externW="0" aggregat="0" masterRegion="0" />
-<color r="0.972549" g="0.788235" b="1" a="1" />
-<nrOfStructures value="8"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</exclusiveComponents>
-<!-- list of informative components : -->
-<informativeComponents>
-<multiComponent name="Informative Component" >
-<structuralComponent name="Facets" mode="WIREFRAME_AND_SURFACE" >
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="6"/>
-<cell>
-<cellProperties index="1" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-</cell>
-<cell>
-<cellProperties index="2" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="1" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="2" />
-</cell>
-<cell>
-<cellProperties index="3" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="2" />
-<atomRef index="6" />
-<atomRef index="7" />
-<atomRef index="3" />
-</cell>
-<cell>
-<cellProperties index="4" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="3" />
-<atomRef index="7" />
-<atomRef index="4" />
-<atomRef index="0" />
-</cell>
-<cell>
-<cellProperties index="5" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="0" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="1" />
-</cell>
-<cell>
-<cellProperties index="6" type="QUAD" />
-<color r="0.972549" g="0.843137" b="1" a="0.607843" />
-<nrOfStructures value="4"/>
-<atomRef index="4" />
-<atomRef index="7" />
-<atomRef index="6" />
-<atomRef index="5" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Cube base" mode="SURFACE" mass="0" viscosityW="0" externW="0" >
-<nrOfStructures value="4"/>
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</structuralComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/cube4.pml b/modeling/libraries/pml/test/cube4.pml
deleted file mode 100644
index 1b75731..0000000
--- a/modeling/libraries/pml/test/cube4.pml
+++ /dev/null
@@ -1,80 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="cube 4" nrOfAtoms="8"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="2"
- nrOfCells="1"
- comment="This is a comment, testing the physicalModel properties!"
- otherGlobalAttributes="4.0"
->
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="element list">
-<nrOfStructures value="8"/>
-<atom>
-<atomProperties index="0" x="-5" y="5" z="-5" name="a0" />
-</atom>
-<atom>
-<atomProperties index="1" x="5" y="5" z="-5"/>
-</atom>
-<atom>
-<atomProperties index="2" x="5" y="5" z="5"/>
-</atom>
-<atom>
-<atomProperties index="3" x="-5" y="5" z="5"/>
-</atom>
-<atom>
-<atomProperties index="4" x="-5" y="-5" z="-5"/>
-</atom>
-<atom>
-<atomProperties index="5" x="5" y="-5" z="-5"/>
-</atom>
-<atom>
-<atomProperties index="6" x="5" y="-5" z="5"/>
-</atom>
-<atom>
-<atomProperties index="7" x="-5" y="-5" z="5"/>
-</atom>
-</structuralComponent>
-</atoms>
-<!-- list of exclusive components : -->
-<exclusiveComponents>
-<multiComponent name="Exclusive components">
-<structuralComponent name="One cubic cell" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.2" a="1" />
-<nrOfStructures value="1"/>
-<cell>
-<cellProperties index="0" type="HEXAHEDRON"/>
-<nrOfStructures value="8"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</exclusiveComponents>
-<!-- list of informative components : -->
-<informativeComponents>
-<multiComponent name="Informative Components">
-<structuralComponent name="up facet" mode="SURFACE">
-<nrOfStructures value="4"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-</structuralComponent>
-<structuralComponent name="down facet" mode="SURFACE">
-<nrOfStructures value="4"/>
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</structuralComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/customProperty-example.pml b/modeling/libraries/pml/test/customProperty-example.pml
deleted file mode 100644
index 02691e5..0000000
--- a/modeling/libraries/pml/test/customProperty-example.pml
+++ /dev/null
@@ -1,74 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, Phymulob...)
- - Testing custom properties (pml v0.7 and over):
- - 1) just read this file!
- -
- - Testing custom properties, old style (prior to v0.7):
- - 1) go to the PhysicalPropertyCustomizer directory,
- - 2) use the XSL stylesheet customPhysicalProperties.xsl with example.xml as input data
- - that will generate 7 files (3 headers and 4 implementation) in the subdirectory src
- - 3) define the environment variable PHYSICALMODELPROPERTIES to point to the subdirectory src
- - 4) re-generate the Makefile using qmake and physicalModel.pro
- - 5) recompile the physical model library. It will now take the extra properties into account
- - 6) recompile pmltest and check that all the custom properties described here and in example.xml
- - are really taken into account (read from the PML document and saved properly)
- -->
-<physicalModel name="custom physical properties test" nrOfAtoms="8"
- nrOfExclusiveComponents="1"
- nrOfCells="1"
->
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="atom list">
-<nrOfStructures value="8"/>
-<atom>
-<atomProperties index="0" x="-5" y="5" z="-5" name="a0" atomIntProp="-103"/>
-</atom>
-<atom>
-<atomProperties index="1" x="5" y="5" z="-5" atomStringProp="a string property!"/>
-</atom>
-<atom>
-<atomProperties index="2" x="5" y="5" z="5" AtomUIntProp="141304"/>
-</atom>
-<atom>
-<atomProperties index="3" x="-5" y="5" z="5" aToMdOuBlEpRoP="-155.34"/>
-</atom>
-<atom>
-<atomProperties index="4" x="-5" y="-5" z="-5" aToMdOuBlEpRoP="4.88801" atomStringProp="same string property!"/>
-</atom>
-<atom>
-<atomProperties index="5" x="5" y="-5" z="-5"/>
-</atom>
-<atom>
-<atomProperties index="6" x="5" y="-5" z="5"/>
-</atom>
-<atom>
-<atomProperties index="7" x="-5" y="-5" z="5"/>
-</atom>
-</structuralComponent>
-</atoms>
-<!-- list of exclusive components : -->
-<exclusiveComponents>
-<multiComponent name="Exclusive components" evenHere="it works!" globalToMulticomponent="yes">
-<structuralComponent name="One SC" mode="WIREFRAME_AND_SURFACE" scBoolProp="1" scCharProp="$">
-<color r="0.8" g="0.8" b="0.2" a="1" />
-<nrOfStructures value="1"/>
-<cell>
-<cellProperties index="0" type="HEXAHEDRON" name="cell property test" cellFloatProp="100.256" cellIntProp="4" scBoolProp="1" scCharProp="@"/>
-<nrOfStructures value="8"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</exclusiveComponents>
-<!-- list of informative components : -->
-<informativeComponents>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/diaph.pml b/modeling/libraries/pml/test/diaph.pml
deleted file mode 100644
index 5259500..0000000
--- a/modeling/libraries/pml/test/diaph.pml
+++ /dev/null
@@ -1,7237 +0,0 @@
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="Phymulob" nrOfAtoms="283"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="3"
- nrOfCells="767"
-
- xmlns="http://www-timc.imag.fr/physicalModel"
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/physicalModel ../schema/physicalModel.xsd'>
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="element list" >
-<nrOfStructures value="283"/>
-<atom>
-<atomProperties index="0" x="-0.525" y="1.41491" z="-0.88" />
-</atom>
-<atom>
-<atomProperties index="1" x="0.225" y="1.5" z="-0.88" />
-</atom>
-<atom>
-<atomProperties index="2" x="0.375" y="1.45" z="-0.88" />
-</atom>
-<atom>
-<atomProperties index="3" x="0.525" y="1.41019" z="-0.88" />
-</atom>
-<atom>
-<atomProperties index="4" x="0.675" y="1.38019" z="-0.88" />
-</atom>
-<atom>
-<atomProperties index="5" x="0.825" y="1.35495" z="-0.84" />
-</atom>
-<atom>
-<atomProperties index="6" x="-0.825987" y="1.25572" z="-0.771593" />
-</atom>
-<atom>
-<atomProperties index="7" x="-0.674784" y="1.33001" z="-0.819262" />
-</atom>
-<atom>
-<atomProperties index="8" x="-0.375" y="1.5" z="-0.86" />
-</atom>
-<atom>
-<atomProperties index="9" x="0.225" y="2.1218" z="-0.77" />
-</atom>
-<atom>
-<atomProperties index="10" x="0.375" y="2.408" z="-0.77" />
-</atom>
-<atom>
-<atomProperties index="11" x="0.525" y="2.55791" z="-0.77" />
-</atom>
-<atom>
-<atomProperties index="12" x="0.675" y="2.59199" z="-0.77" />
-</atom>
-<atom>
-<atomProperties index="13" x="0.975108" y="1.30849" z="-0.773181" />
-</atom>
-<atom>
-<atomProperties index="14" x="-0.975" y="1.2101" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="15" x="-0.825" y="2.42466" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="16" x="-0.675" y="2.47108" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="17" x="-0.525" y="2.41968" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="18" x="-0.375" y="2.31973" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="19" x="-0.22815" y="1.94897" z="-0.69354" />
-</atom>
-<atom>
-<atomProperties index="20" x="0.225" y="2.27191" z="-0.66" />
-</atom>
-<atom>
-<atomProperties index="21" x="0.375" y="2.54818" z="-0.66" />
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diff --git a/modeling/libraries/pml/test/human-trunk.pml b/modeling/libraries/pml/test/human-trunk.pml
deleted file mode 100644
index f2e7dac..0000000
--- a/modeling/libraries/pml/test/human-trunk.pml
+++ /dev/null
@@ -1,4584 +0,0 @@
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, Phymulob...) -->
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-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="205" />
-<atomRef index="206" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="206" />
-<atomRef index="207" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="207" />
-<atomRef index="208" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="208" />
-<atomRef index="209" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="209" />
-<atomRef index="203" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #20 (rib_8_L)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="273" />
-<atomRef index="274" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="274" />
-<atomRef index="275" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="275" />
-<atomRef index="276" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="276" />
-<atomRef index="277" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="277" />
-<atomRef index="278" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="278" />
-<atomRef index="272" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #21 (rib_9_R)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="212" />
-<atomRef index="213" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="213" />
-<atomRef index="214" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="214" />
-<atomRef index="215" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="215" />
-<atomRef index="216" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="216" />
-<atomRef index="211" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #22 (rib_9_L)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="281" />
-<atomRef index="282" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="282" />
-<atomRef index="283" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="283" />
-<atomRef index="284" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="284" />
-<atomRef index="285" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="285" />
-<atomRef index="280" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #23 (rib_10_R)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="307" />
-<atomRef index="308" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="308" />
-<atomRef index="309" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="309" />
-<atomRef index="310" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="310" />
-<atomRef index="311" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #24 (rib_10_L)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="292" />
-<atomRef index="293" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="293" />
-<atomRef index="294" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="294" />
-<atomRef index="295" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="295" />
-<atomRef index="296" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="296" />
-<atomRef index="147" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #25 (rib_11_R)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="312" />
-<atomRef index="313" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="313" />
-<atomRef index="314" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="314" />
-<atomRef index="315" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="315" />
-<atomRef index="304" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #26 (rib_11_L)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="297" />
-<atomRef index="298" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="298" />
-<atomRef index="299" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="299" />
-<atomRef index="300" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="300" />
-<atomRef index="289" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #27 (rib_12_R)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="343" />
-<atomRef index="344" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="344" />
-<atomRef index="345" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="345" />
-<atomRef index="346" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #28 (rib_12_L)" mode="WIREFRAME_AND_SURFACE">
-<color r="0.8" g="0.8" b="0.8" a="1.0" />
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="347" />
-<atomRef index="348" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="348" />
-<atomRef index="349" />
-</cell>
-<cell>
-<cellProperties type="POLY_LINE" />
-<atomRef index="349" />
-<atomRef index="350" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/icosahedron.pml b/modeling/libraries/pml/test/icosahedron.pml
deleted file mode 100644
index cdc112b..0000000
--- a/modeling/libraries/pml/test/icosahedron.pml
+++ /dev/null
@@ -1,348 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="Ico" nrOfAtoms="12"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="3"
- nrOfCells="33"
-
- xmlns="http://www-timc.imag.fr/physicalModel"
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/physicalModel ../schema/physicalModel.xsd'>
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="element list" myCustomProperty1="123" myCustomProperty2="another value">
-<nrOfStructures value="12"/>
-<atom>
-<atomProperties index="0" x="0" y="77.8211" z="-42.533" myCustomProperty1="222" />
-</atom>
-<atom>
-<atomProperties index="1" x="40.4508" y="77.8211" z="-13.143" myCustomProperty2="yo!" />
-</atom>
-<atom>
-<atomProperties index="2" x="25" y="77.8211" z="34.41" />
-</atom>
-<atom>
-<atomProperties index="3" x="-25" y="77.8211" z="34.41" myCustomProperty1="999" myCustomProperty2="2 customs at the same time"/>
-</atom>
-<atom>
-<atomProperties index="4" x="-40.4508" y="77.8211" z="-13.143" />
-</atom>
-<atom>
-<atomProperties index="5" x="25" y="120.354" z="-34.41" />
-</atom>
-<atom>
-<atomProperties index="6" x="40.4508" y="120.354" z="13.143" />
-</atom>
-<atom>
-<atomProperties index="7" x="0" y="120.354" z="42.533" />
-</atom>
-<atom>
-<atomProperties index="8" x="-40.4508" y="120.354" z="13.143" />
-</atom>
-<atom>
-<atomProperties index="9" x="-25" y="120.354" z="-34.41" />
-</atom>
-<atom>
-<atomProperties index="10" x="0" y="51.5346" z="0" />
-</atom>
-<atom>
-<atomProperties index="11" x="0" y="146.64" z="0" />
-</atom>
-</structuralComponent>
-</atoms>
-<!-- list of exclusive components : -->
-<exclusiveComponents>
-<multiComponent name="Regions" >
-<structuralComponent name="Region #0 icosahedron" mode="POINTS" >
-<color r="0.8" g="0.8" b="0.2" a="1" />
-<nrOfStructures value="1"/>
-<cell>
-<cellProperties index="0" type="POLY_VERTEX" myCustomProperty1="14.5" myCustomProperty2="2"/>
-<nrOfStructures value="12"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="7" />
-<atomRef index="8" />
-<atomRef index="9" />
-<atomRef index="10" />
-<atomRef index="11" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</exclusiveComponents>
-<!-- list of informative components : -->
-<informativeComponents>
-<multiComponent name="Facets and neighbourhood" >
-<structuralComponent name="Element Neighborhoods" >
-<color r="0.5" g="0.5" b="0.5" a="1" />
-<nrOfStructures value="12"/>
-<cell>
-<cellProperties index="1" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="10" />
-<atomRef index="4" />
-<atomRef index="9" />
-<atomRef index="5" />
-<atomRef index="1" />
-</cell>
-<cell>
-<cellProperties index="2" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="10" />
-<atomRef index="0" />
-<atomRef index="5" />
-<atomRef index="6" />
-<atomRef index="2" />
-</cell>
-<cell>
-<cellProperties index="3" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="10" />
-<atomRef index="1" />
-<atomRef index="6" />
-<atomRef index="7" />
-<atomRef index="3" />
-</cell>
-<cell>
-<cellProperties index="4" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="10" />
-<atomRef index="2" />
-<atomRef index="7" />
-<atomRef index="8" />
-<atomRef index="4" />
-</cell>
-<cell>
-<cellProperties index="5" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="10" />
-<atomRef index="3" />
-<atomRef index="8" />
-<atomRef index="9" />
-<atomRef index="0" />
-</cell>
-<cell>
-<cellProperties index="6" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="0" />
-<atomRef index="9" />
-<atomRef index="11" />
-<atomRef index="6" />
-<atomRef index="1" />
-</cell>
-<cell>
-<cellProperties index="7" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="1" />
-<atomRef index="5" />
-<atomRef index="11" />
-<atomRef index="7" />
-<atomRef index="2" />
-</cell>
-<cell>
-<cellProperties index="8" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="2" />
-<atomRef index="6" />
-<atomRef index="11" />
-<atomRef index="8" />
-<atomRef index="3" />
-</cell>
-<cell>
-<cellProperties index="9" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="3" />
-<atomRef index="7" />
-<atomRef index="11" />
-<atomRef index="9" />
-<atomRef index="4" />
-</cell>
-<cell>
-<cellProperties index="10" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="4" />
-<atomRef index="8" />
-<atomRef index="11" />
-<atomRef index="5" />
-<atomRef index="0" />
-</cell>
-<cell>
-<cellProperties index="11" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="4" />
-</cell>
-<cell>
-<cellProperties index="12" type="POLY_VERTEX" />
-<nrOfStructures value="5"/>
-<atomRef index="9" />
-<atomRef index="8" />
-<atomRef index="7" />
-<atomRef index="6" />
-<atomRef index="5" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of region #0 (icosahedron)" mode="WIREFRAME_AND_SURFACE" >
-<color r="0.8" g="0.8" b="0.2" a="1" />
-<nrOfStructures value="15"/>
-<cell>
-<cellProperties index="13" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="0" />
-<atomRef index="10" />
-<atomRef index="4" />
-</cell>
-<cell>
-<cellProperties index="14" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="0" />
-<atomRef index="4" />
-<atomRef index="9" />
-</cell>
-<cell>
-<cellProperties index="15" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="0" />
-<atomRef index="9" />
-<atomRef index="5" />
-</cell>
-<cell>
-<cellProperties index="16" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="0" />
-<atomRef index="5" />
-<atomRef index="1" />
-</cell>
-<cell>
-<cellProperties index="17" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="0" />
-<atomRef index="1" />
-<atomRef index="10" />
-</cell>
-<cell>
-<cellProperties index="18" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="1" />
-<atomRef index="5" />
-<atomRef index="6" />
-</cell>
-<cell>
-<cellProperties index="19" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="1" />
-<atomRef index="6" />
-<atomRef index="2" />
-</cell>
-<cell>
-<cellProperties index="20" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="1" />
-<atomRef index="2" />
-<atomRef index="10" />
-</cell>
-<cell>
-<cellProperties index="21" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="2" />
-<atomRef index="3" />
-<atomRef index="10" />
-</cell>
-<cell>
-<cellProperties index="22" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="3" />
-<atomRef index="8" />
-<atomRef index="4" />
-</cell>
-<cell>
-<cellProperties index="23" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="3" />
-<atomRef index="4" />
-<atomRef index="10" />
-</cell>
-<cell>
-<cellProperties index="24" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="4" />
-<atomRef index="8" />
-<atomRef index="9" />
-</cell>
-<cell>
-<cellProperties index="25" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="3" />
-<atomRef index="7" />
-<atomRef index="8" />
-</cell>
-<cell>
-<cellProperties index="26" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="2" />
-<atomRef index="7" />
-<atomRef index="3" />
-</cell>
-<cell>
-<cellProperties index="27" type="TRIANGLE" />
-<nrOfStructures value="3"/>
-<atomRef index="2" />
-<atomRef index="6" />
-<atomRef index="7" />
-</cell>
-</structuralComponent>
-<structuralComponent name="Facet of Chapeau(5)" mode="WIREFRAME_AND_SURFACE" >
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="5"/>
-<cell>
-<cellProperties index="28" type="TRIANGLE" />
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="3"/>
-<atomRef index="5" />
-<atomRef index="9" />
-<atomRef index="11" />
-</cell>
-<cell>
-<cellProperties index="29" type="TRIANGLE" />
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="3"/>
-<atomRef index="5" />
-<atomRef index="11" />
-<atomRef index="6" />
-</cell>
-<cell>
-<cellProperties index="30" type="TRIANGLE" />
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="3"/>
-<atomRef index="6" />
-<atomRef index="11" />
-<atomRef index="7" />
-</cell>
-<cell>
-<cellProperties index="31" type="TRIANGLE" />
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="3"/>
-<atomRef index="7" />
-<atomRef index="11" />
-<atomRef index="8" />
-</cell>
-<cell>
-<cellProperties index="32" type="TRIANGLE" />
-<color r="1" g="0.74902" b="0" a="1" />
-<nrOfStructures value="3"/>
-<atomRef index="8" />
-<atomRef index="11" />
-<atomRef index="9" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/test/pmltest.cpp b/modeling/libraries/pml/test/pmltest.cpp
deleted file mode 100644
index 181c7a2..0000000
--- a/modeling/libraries/pml/test/pmltest.cpp
+++ /dev/null
@@ -1,129 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-#include <string.h>
-#include <sys/stat.h>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <Atom.h>
-#include <StructuralComponent.h>
-
-
-int main ( int argc, char ** argv ) {
- bool inputTest = false;
- bool statMode = false;
- std::string ifile;
- std::string ofile;
-
- // analyze arguments
- for (int i=1; i<argc; i++) {
- if (!strcmp(argv[i],"-i")) {
- ifile = argv[i+1];
- inputTest = true;
- }
-
- if (!strcmp(argv[i],"-stat")) {
- statMode = true;
- }
- }
-
- if (!inputTest) {
- if (argc>1) {
- std::cout << "Argument errors: ";
-
- for(int i=1; i<argc; i++) {
- std::cout << "[" << argv[i] << "] ";
- }
- }
-
- cout << endl;
- cout << "usage: pmltest [-i file.pml] [-stat]" << endl;
- cout << "\t-i in.xml\treading test: read the file, create object and then print them on stdout" << endl;
- cout << "\t-stat\t\tsame as above but instead of printing back on stdout, show some stats" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
-
- if (argc>1)
- return EXIT_FAILURE;
- else
- return EXIT_SUCCESS;
- }
-
- try {
- string filename ( ifile );
-
-
- PhysicalModel pm ( filename.c_str() );
-
- if (statMode) {
- cout << "name= " << pm.getName() << endl;
- cout << "nr of atoms= " << pm.getNumberOfAtoms() << endl;
- cout << "nr of cells= " << pm.getNumberOfCells() << endl;
-
- double bary[3];
-
- for ( int i=0; i<3; i++ )
- bary[i] = 0.0;
-
- double pos[3];
-
- for (unsigned int i=0; i<pm.getNumberOfAtoms(); i++ ) {
- dynamic_cast<Atom*>(pm.getAtoms()->getStructure( i ))->getPosition ( pos );
-
- for ( int j=0; j<3; j++ )
- bary[j] += pos[j];
- }
-
- for ( int i=0; i<3; i++ )
- bary[i] /= pm.getNumberOfAtoms();
-
- cout << "barycenters of atoms= (" << bary[0] << "," << bary[1] << "," << bary[2] << ")" << endl;
-
- unsigned int pLast = filename.rfind ( "." );
-
- if ( pLast != string::npos ) {
- filename.erase ( pLast );
- filename += "-output-pmltest.pml";
- } else
- filename="output-pmltest.pml";
-
- cout << "-> saved as " << filename << endl;
- ofstream outputFile ( filename.c_str() );
- pm.xmlPrint ( outputFile );
- } else {
- pm.xmlPrint(cout);
- }
-
- return EXIT_SUCCESS;
- } catch ( PMLAbortException ae ) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-
- return EXIT_FAILURE;
-
-}
diff --git a/modeling/libraries/pml/test/visage.pml b/modeling/libraries/pml/test/visage.pml
deleted file mode 100644
index 7207f42..0000000
--- a/modeling/libraries/pml/test/visage.pml
+++ /dev/null
@@ -1,46311 +0,0 @@
-<!-- physical model is a generic representation for 3D physical model (FEM, spring mass network, phymulob...) -->
-<physicalModel name="Face mesh" nrOfAtoms="4215"
- nrOfExclusiveComponents="1"
- nrOfInformativeComponents="1"
- nrOfCells="2885"
- xmlns="http://www-timc.imag.fr/physicalModel"
- xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
- xsi:schemaLocation='http://www-timc.imag.fr/physicalModel ../schema/physicalModel.xsd'>
-<!-- list of atoms: -->
-<atoms>
-<structuralComponent name="The atoms" >
-<atom>
-<atomProperties index="0" x="-0.0280686" y="0.390867" z="0.144781" />
-</atom>
-<atom>
-<atomProperties index="1" x="-0.0252617" y="0.387765" z="0.14979" />
-</atom>
-<atom>
-<atomProperties index="2" x="-0.0224549" y="0.385167" z="0.152963" />
-</atom>
-<atom>
-<atomProperties index="3" x="-0.019648" y="0.383037" z="0.155079" />
-</atom>
-<atom>
-<atomProperties index="4" x="-0.00842058" y="0.378456" z="0.15765" />
-</atom>
-<atom>
-<atomProperties index="5" x="-0.00280686" y="0.377916" z="0.158033" />
-</atom>
-<atom>
-<atomProperties index="6" x="0" y="0.377883" z="0.158046" />
-</atom>
-<atom>
-<atomProperties index="7" x="0.00561372" y="0.378084" z="0.157936" />
-</atom>
-<atom>
-<atomProperties index="8" x="0.0168412" y="0.381339" z="0.156397" />
-</atom>
-<atom>
-<atomProperties index="9" x="0.019648" y="0.383037" z="0.155079" />
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-<atom>
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-<atom>
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-<atomRef index="4149" />
-<atomRef index="4150" />
-<atomRef index="4151" />
-<atomRef index="4152" />
-<atomRef index="4153" />
-<atomRef index="4154" />
-<atomRef index="4155" />
-<atomRef index="4156" />
-<atomRef index="4157" />
-<atomRef index="4158" />
-<atomRef index="4159" />
-<atomRef index="4160" />
-<atomRef index="4161" />
-<atomRef index="4162" />
-<atomRef index="4163" />
-<atomRef index="4164" />
-<atomRef index="4165" />
-<atomRef index="4166" />
-<atomRef index="4167" />
-<atomRef index="4168" />
-<atomRef index="4169" />
-<atomRef index="4170" />
-<atomRef index="4171" />
-<atomRef index="4172" />
-<atomRef index="4173" />
-<atomRef index="4174" />
-<atomRef index="4175" />
-<atomRef index="4176" />
-<atomRef index="4177" />
-<atomRef index="4178" />
-<atomRef index="4179" />
-<atomRef index="4180" />
-<atomRef index="4181" />
-<atomRef index="4182" />
-<atomRef index="4183" />
-<atomRef index="4184" />
-<atomRef index="4185" />
-<atomRef index="4186" />
-<atomRef index="4187" />
-<atomRef index="4188" />
-<atomRef index="4189" />
-<atomRef index="4190" />
-<atomRef index="4191" />
-<atomRef index="4192" />
-<atomRef index="4193" />
-<atomRef index="4194" />
-<atomRef index="4195" />
-<atomRef index="4196" />
-<atomRef index="4197" />
-<atomRef index="4198" />
-<atomRef index="4199" />
-<atomRef index="4200" />
-<atomRef index="4201" />
-<atomRef index="4202" />
-<atomRef index="4203" />
-<atomRef index="4204" />
-<atomRef index="4205" />
-<atomRef index="4206" />
-<atomRef index="4207" />
-<atomRef index="4208" />
-<atomRef index="4209" />
-<atomRef index="4210" />
-<atomRef index="4211" />
-<atomRef index="4212" />
-<atomRef index="4213" />
-<atomRef index="4214" />
-</cell>
-</structuralComponent>
-</multiComponent>
-</multiComponent>
-</informativeComponents>
-</physicalModel>
diff --git a/modeling/libraries/pml/tools/CMakeLists.txt b/modeling/libraries/pml/tools/CMakeLists.txt
deleted file mode 100644
index 78bdc0c..0000000
--- a/modeling/libraries/pml/tools/CMakeLists.txt
+++ /dev/null
@@ -1,64 +0,0 @@
-# this is the macro to use in all subdirs CMakeLists
-macro(pml_tool)
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} PMLTOOL_NAME)
-
- parse_arguments(${PMLTOOL_NAME_CMAKE}
- "" # possible lists
- "NEEDS_LML" # possible options
- ${ARGN}
- )
-
- # if this extension is enabled, do everything needed
- # otherwise... do nothing
- if (PML_TOOLS)
- gather_headers_and_sources(PMLTOOL_NAME)
-
- if (${PMLTOOL_NAME_CMAKE}_NEEDS_LML)
- set(LML_LIBRARIES lml)
- include_directories(${CMAKE_CURRENT_SOURCE_DIR}/../../lml)
- endif()
-
- # check for target name
- set(PML_TOOLS_TARGET_NAME pml-tool-${PMLTOOL_NAME})
-
- add_executable(${PML_TOOLS_TARGET_NAME} ${PMLTOOL_NAME_SOURCES})
- target_link_libraries(${PML_TOOLS_TARGET_NAME} ${PML_LIBRARIES} ${LML_LIBRARIES})
- # target properties
- set_target_properties(${PML_TOOLS_TARGET_NAME}
- PROPERTIES OUTPUT_NAME ${PMLTOOL_NAME}
- )
- add_dependencies(${PML_TOOLS_TARGET_NAME} pml ${LML_LIBRARIES})
-
- # installation
- install(TARGETS ${PML_TOOLS_TARGET_NAME}
- RUNTIME DESTINATION bin
- COMPONENT pml-tools
- )
- endif()
-
-endmacro()
-
-# if this is the first run
-if(NOT PML_TOOLS_INTERNAL)
- message(STATUS "Checking for pml tools")
- # add option to enable/disable this pml tools
- set(PML_TOOLS FALSE CACHE BOOL "Build all pml tools")
- set(PML_TOOLS_INTERNAL TRUE CACHE INTERNAL "Is PML_TOOLS already created?")
- mark_as_advanced(PML_TOOLS_INTERNAL)
-endif()
-
-# select possible tools
-include_directories( ${PML_INCLUDE_DIRECTORIES})
-set(PMLTOOLS_SOURCE_DIR ${PML_SOURCE_DIR}/tools)
-
-# use CamiTK macro to detect the subdirectories
-# find components
-get_subdirectories(PMLTOOLS_LIST)
-
-message(STATUS "Building pml tools: ${PML_TOOLS}")
-
-# --- add every given/valid tools
-# using the FOREACH statement allows the case where tools_SUBDIRS is empty!
-foreach(PMLTOOL_NAME ${PMLTOOLS_LIST})
- add_subdirectory(${PMLTOOL_NAME})
-endforeach()
\ No newline at end of file
diff --git a/modeling/libraries/pml/tools/ansys2pml/ansys2pml.cpp b/modeling/libraries/pml/tools/ansys2pml/ansys2pml.cpp
deleted file mode 100644
index de3fbad..0000000
--- a/modeling/libraries/pml/tools/ansys2pml/ansys2pml.cpp
+++ /dev/null
@@ -1,380 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-
-#include "programarg.h"
-
-// global parameters (command line arguments)
-string outputPML;
-vector <string> nodeFileNames;
-vector <string> elemFileNames;
-StructureProperties::GeometricType type;
-
-// maps to get the correspondance between atom id and node file id
-namespace std {
-typedef std::pair<unsigned int, Atom *> AtomIndexPair;
-typedef map <unsigned int, Atom *> AtomIndexMap;
-typedef map <unsigned int, Atom *> ::iterator AtomIndexMapIterator;
-}
-
-// one map for each node file
-vector <AtomIndexMap> maps;
-
-// the input node.txt file
-class InputFile {
-public:
- string fileName;
- std::ifstream stream;
- unsigned lineNr;
- bool eof;
- unsigned int id;
-
- InputFile(string f, unsigned int index) : fileName(f), id(index) {
- open();
- };
-
- ~InputFile() {
- stream.close();
- }
-
- void init() {
- eof = false;
- lineNr = 0;
- }
-
- void open() {
- stream.open(fileName.c_str());
- if (!stream.is_open()) {
- cerr << "Error: cannot open file " << fileName << endl;
- exit(1);
- }
- init();
- }
-};
-
-// a node file line
-// NUM X Y Z, where NUM is the node number
-typedef struct {
- int id;
- double pos[3];
-} NodeLine;
-
-NodeLine currentNodeLine;
-
-// an elem file line
-/* read two lines
- * For tetrahedron : node id are 1,2,3 and 5
- * Elem Id is the last nr of the second lines
- */
-typedef struct {
- int node[4];
- int type;
- int id;
-} TetraElemLine;
-
-TetraElemLine currentElemLine;
-
-// -------------------- getNextNode ------------------------
-void getNextNode(InputFile & nodes) {
- char l[200];
-
- if (!nodes.eof) {
- // read the next line
- nodes.eof = !(nodes.stream.getline(l,199));
- nodes.lineNr++;
- // analyze
- stringstream line(l);
- // if the node id is found
- if ((line >> currentNodeLine.id)) {
- for (unsigned int i=0; i<3; i++) {
- if (!(line >> currentNodeLine.pos[i])) {
- cerr << "Error in " << nodes.fileName << " line " << nodes.lineNr << " node #" << currentNodeLine.id << ": cannot find coordinate " << i+1 << " (set to 0.0)" << endl;
- currentNodeLine.pos[i] = 0.0;
- }
- }
- }
- }
-}
-
-// -------------------- getNextElem ------------------------
-void getNextElem(InputFile & elems) {
- char l[200];
- int data[14];
-
- if (!elems.eof) {
- // read the first line
- elems.eof = !(elems.stream.getline(l,199));
- elems.lineNr++;
- stringstream line2(l);
- for (unsigned int i=0; i<14; i++)
- line2 >> data[i];
-
- // mat is the 10th value
- currentElemLine.type = data[9];
-
- if (type==StructureProperties::TETRAHEDRON || currentElemLine.type==2) {
- // node id is the 1st,2nd,3rd and 5th integer
- currentElemLine.node[0] = data[0];
- currentElemLine.node[1] = data[1];
- currentElemLine.node[2] = data[2];
- currentElemLine.node[3] = data[4];
- }
- if (type==StructureProperties::QUAD) {
- // node id are 6th, 7th, 8th and 9th integer
- currentElemLine.node[0] = data[6];
- currentElemLine.node[1] = data[7];
- currentElemLine.node[2] = data[8];
- currentElemLine.node[3] = data[9];
- }
-
- // elem id is the last data
- currentElemLine.id = data[13];
-
- // read the second line, no data there
- if (type==StructureProperties::TETRAHEDRON) {
- elems.eof = !(elems.stream.getline(l,199));
- elems.lineNr++;
- }
- }
-}
-
-// -------------------- nodesToAtoms ------------------------
-StructuralComponent * nodesToAtoms(StructuralComponent * atoms, unsigned int * atomIndex, InputFile & nodes) {
- // create a new map
- AtomIndexMap m;
-
- // create the corresponding SC
- StructuralComponent * nodeSC = new StructuralComponent(NULL, nodes.fileName);
-
- cout << nodes.fileName << "=> atom #" << *atomIndex;
- // go to the first node line
- getNextNode(nodes);
-
- do {
- // currentNodeLine.id becomes atomIndex
- Atom *a = new Atom(NULL, (*atomIndex), currentNodeLine.pos);
- atoms->addStructure(a);
- (*atomIndex)++;
-
- // add the atom to the SC
- nodeSC->addStructure(a);
-
- // add the local index
- m.insert(AtomIndexPair(currentNodeLine.id, a));
-
- // next one!
- getNextNode(nodes);
- } while (!nodes.eof);
-
- cout << " to atom #" << (*atomIndex)-1 << endl;
-
- // add the map to the list
- maps.push_back(m);
-
- return nodeSC;
-}
-
-
-// -------------------- elemToSC ------------------------
-StructuralComponent * elemToSC(StructuralComponent * elemSC, InputFile & elems) {
- StructuralComponent * infoSC = new StructuralComponent(NULL, elems.fileName + " elements");
- Cell *c;
-
- // go to the first elem directive
- getNextElem(elems);
-
- // process f directives
- do {
- if (type==StructureProperties::TETRAHEDRON || currentElemLine.type==2) {
- // create tetrahedron cell
- c = new Cell(NULL, StructureProperties::TETRAHEDRON, currentElemLine.id);
-
- if (c!=NULL) {
- // add atoms
- for (unsigned int i=0; i<4; i++) {
- // get the atom from the corresponding map
- AtomIndexMapIterator mapIt;
- mapIt = maps[elems.id].find(currentElemLine.node[i]);
- Atom *a = (mapIt == maps[elems.id].end()) ? NULL : mapIt->second;
-
- if (a!=NULL)
- c->addStructure(a);
- else
- cerr << "Error in " << elems.fileName << ", line " << elems.lineNr << ": cannot find atom #" << currentElemLine.node[i] << endl;
- }
-
- // add the cell to the informative and exclusive component
- elemSC->addStructure(c);
- infoSC->addStructure(c);
- }
- } else if (type==StructureProperties::QUAD) {
- // create quad cell
- c = new Cell(NULL, StructureProperties::QUAD, currentElemLine.id);
-
- if (c!=NULL) {
- // add atoms
- for (unsigned int i=0; i<4; i++) {
- // get the atom from the corresponding map
- AtomIndexMapIterator mapIt;
- mapIt = maps[elems.id].find(currentElemLine.node[i]);
- Atom *a = (mapIt == maps[elems.id].end()) ? NULL : mapIt->second;
-
- if (a!=NULL)
- c->addStructure(a);
- else
- cerr << "Error in " << elems.fileName << ", line " << elems.lineNr << ": cannot find atom #" << currentElemLine.node[i] << endl;
- }
-
- // add the cell to the informative and exclusive component
- elemSC->addStructure(c);
- infoSC->addStructure(c);
- }
- } else {
- cerr << "Warning in " << elems.fileName << ", line " << elems.lineNr << ": type is unknown (" << currentElemLine.type << ")" << endl;
- }
-
- // go to the next directive
- getNextElem(elems);
- } while (!elems.eof);
-
- cout << elems.fileName << " => " << infoSC->getNumberOfStructures() << " elements" << endl;
- return infoSC;
-}
-
-// -------------------- processArg ------------------------
-void processArg() {
-
- if (argVal["-n"]=="none") {
- cerr << "Argument error: -n is mandatory" << usage << endl;
- exit(-1);
- }
-
- stringstream nodeNames(argVal["-n"]);
- char line[200];
- bool eof=false;
- while (!eof) {
- eof = !(nodeNames.getline(line,199,','));
- if (line[0]!='\0')
- nodeFileNames.push_back(line);
- }
-
- stringstream elemNames(argVal["-e"]);
- if (argVal["-e"]!="none") {
- eof=false;
- while (!eof) {
- eof = !(elemNames.getline(line,199,','));
- if (line[0]!='\0')
- elemFileNames.push_back(line);
- }
- if (elemFileNames.size()!=nodeFileNames.size()) {
- cerr << "Warning: the number of element files (" << elemFileNames.size() << " and node files (" << nodeFileNames.size() << " are differents" << endl;
- }
- }
-
- outputPML = argVal["-o"];
-
- type = StructureProperties::toType(argVal["-t"]);
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "ansys2pml generating " << outputPML << " from node files ";
- for (unsigned int i=0; i<nodeFileNames.size(); i++) {
- cout << nodeFileNames[i];
- if (i!=nodeFileNames.size()-1)
- cout << ",";
- }
- cout << " and elem files ";
- for (unsigned int i=0; i<elemFileNames.size(); i++) {
- cout << elemFileNames[i];
- if (i!=elemFileNames.size()-1)
- cout << ",";
- }
- cout << endl;
- cout << "Elements are of type " << StructureProperties::toString(type) << endl;
- cout << endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
-
- processArg();
- printArg();
-
- try {
-
- // create a new physical model
- PhysicalModel * pm = new PhysicalModel();
- pm->setName("PML for " + argVal["-n"]);
- pm->setInformativeComponents(new MultiComponent(NULL, "Informative Components"));
-
- // create the new atom SC
- StructuralComponent * atoms = new StructuralComponent(NULL, "Atoms");
- // very important: start at 1 to have the same index system
- unsigned int atomIndex=1;
-
- // open the node files
- for (unsigned int i=0; i<nodeFileNames.size(); i++) {
- InputFile nodes(nodeFileNames[i],i);
- StructuralComponent *nodeSC = nodesToAtoms(atoms,&atomIndex,nodes);
- // add the nodeSC to the pml
- pm->getInformativeComponents()->addSubComponent(nodeSC);
- }
- // add the atom list to the pml
- pm->setAtoms(atoms);
-
- // create the new element SC
- StructuralComponent * elemSC = new StructuralComponent(NULL, "Elements");
-
- // open the elem files
- for (unsigned int i=0; i<elemFileNames.size(); i++) {
- InputFile elems(elemFileNames[i],i);
- StructuralComponent * yetAnotherSC = elemToSC(elemSC, elems);
- // add the yetAnotherSC to the pml
- pm->getInformativeComponents()->addSubComponent(yetAnotherSC);
- }
- // add the element list to the pml
- pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
- pm->getExclusiveComponents()->addSubComponent(elemSC);
-
- // save the result in the pml file
- ofstream outputFile(outputPML.c_str());
- pm->xmlPrint(outputFile);
-
- } catch(AbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/ansys2pml/programarg.h b/modeling/libraries/pml/tools/ansys2pml/programarg.h
deleted file mode 100644
index cd5fa91..0000000
--- a/modeling/libraries/pml/tools/ansys2pml/programarg.h
+++ /dev/null
@@ -1,99 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-/**
- * @ingroup group_cepmodeling_libraries_pml
- *
- * @brief
- * TODO Comment class here.
- *
- **/
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for(unsigned int i=0; i<sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for(int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if(equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if(find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for(iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-n", "none" },
- { "-e", "none" },
- { "-t", "none" },
- { "-o", "ansys2pml-output.pml" },
-};
-
-const char* usage = "usage:\n"
- "ansys2pml -n=nodes1.txt,..,nodesN.txt [-e=elem1.txt,..elemN.txt] [-t=ELEM_TYPE] [-o=output]\n"
- "Transform nodes and elements ANSYS files to a PML\n"
- "To produce a correct PML, the file are to be ordered the same way they were exported in ANSYS\n"
- "(Note no space around '=')\n"
- "Where the flags can be any of: \n"
- " -n input node files separated by a comma\n"
- " -e input element files separated by a comma\n"
- " -t element type (see below)\n"
- " -o output PML file name\n"
- "\n"
- "Element type defines the element geometry:\n"
- "- TETRAHEDRON elements are tetrahedron, node index are integer #1, #2, #3 and #5 for each element file line\n"
- "- QUAD elements are 2D quads, node index are integer #1, #2, #3 and #4 (I,J,K,L) for each element file line\n"
- ;
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-
diff --git a/modeling/libraries/pml/tools/elementsToNeighborhood/elementsToNeighborhood.cpp b/modeling/libraries/pml/tools/elementsToNeighborhood/elementsToNeighborhood.cpp
deleted file mode 100644
index 3182edd..0000000
--- a/modeling/libraries/pml/tools/elementsToNeighborhood/elementsToNeighborhood.cpp
+++ /dev/null
@@ -1,700 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-
-/// class facet to old and compare facet
-class Facet {
-public:
- /// create a facet using size nodes and their indexes
- Facet(unsigned int size, unsigned int id[]);
-
- /// destructor
- virtual ~Facet();
-
- /// if it is the same (equivalent) facet, increment used (return true if equivalence)
- bool testEquivalence(unsigned int size, unsigned int id[]);
-
- /// return the corresponding PML cell
- Cell * getCell(PhysicalModel *) const;
-
- /// print on stdout
- void debug();
-
- /// get the number of time it is being used
- unsigned int getUsed() const;
-
-private:
- /// is this atom index present in this facet (no check on the order)
- bool isIn(unsigned int) const;
-
- /// the facet atom indexes
- unsigned int *id;
-
- /// nr of atoms composing the facet (3 = triangle, 4 = quad)
- unsigned int size;
-
- /// nr of times the facet is used
- unsigned int used;
-};
-
-
-// -------------------- constructor/destructor ------------------------
-Facet::Facet(unsigned int size, unsigned int id[]) {
- this->size = size;
- this->id = new unsigned int[size];
- for (unsigned int i=0; i<size; i++)
- this->id[i]=id[i];
- used = 1;
-}
-
-Facet::~Facet() {
- delete [] id;
-}
-
-// -------------------- debug ------------------------
-void Facet::debug() {
- switch (size) {
- case 3:
- cout << "triangle <";
- break;
- case 4:
- cout << "quad <";
- break;
- default:
- cout << "unknown facet <";
- break;
- }
- unsigned int i;
- for (i=0; i<size-1; i++)
- cout << id[i] << ",";
- cout << id[i] << "> used " << used << " times" << endl;
-}
-
-
-// -------------------- testEquivalence ------------------------
-bool Facet::testEquivalence(unsigned int size, unsigned int id[]) {
- if (this->size != size) {
- return false;
- } else {
- unsigned int i=0;
- while (i<size && isIn(id[i])) {
- i++;
- }
-
- if (i==size)
- used++;
-
- return (i==size);
- }
-}
-
-// -------------------- isIn ------------------------
-bool Facet::isIn(unsigned int index) const {
- unsigned int i=0;
- while (i<size && id[i]!=index)
- i++;
- return (i!=size);
-}
-
-// -------------------- getCell ------------------------
-Cell * Facet::getCell(PhysicalModel *pm) const {
- Cell *c;
- // create the correct geometric type cell
- switch (size) {
- case 3:
- c = new Cell(NULL, StructureProperties::TRIANGLE);
- break;
- case 4:
- c = new Cell(NULL, StructureProperties::QUAD);
- break;
- default:
- c=NULL;
- }
- // get the atom corresponding to the index stored in id
- // and insert them in the cell
- for (unsigned int i=0; i<size; i++) {
- Atom *a = pm->getAtom(id[i]);
- if (a==NULL) {
- cout << "Argh! Cannot find atom #" << id[i] << endl;
- } else {
- c->addStructureIfNotIn(a);
- }
- }
- return c;
-}
-
-// -------------------- getUsed ------------------------
-unsigned int Facet::getUsed() const {
- return used;
-}
-
-// -------------------- Neigborhood Map ------------------------
-// associative map of all the neighboors for a given index of an atom
-map<unsigned int, Cell*> neighMap;
-
-// -------------------- getIterator ------------------------
-// get the iterator on the correct atom index in the neighMap
-// if non existant create it
-map<unsigned int, Cell*>::iterator getIterator(unsigned int index) {
- map<unsigned int, Cell*>::iterator it;
-
- // find atom index in the map
- it = neighMap.find(index);
-
- // not present, insert a new cell, associated with index
- if (it==neighMap.end()) {
- // instanciate
- Cell *nc = new Cell(NULL, StructureProperties::POLY_VERTEX);
- // name
- stringstream n(std::stringstream::out);
- n << "Atom #" << index << '\0';
- ((Structure *)nc)->setName(n.str());
- // insert the new cell in the map
- pair<map<unsigned int, Cell*>::iterator, bool> ins = neighMap.insert(map<unsigned int, Cell*>::value_type(index, nc));
- // it show where it has been inserted
- it = ins.first;
- }
-
- return it;
-}
-
-// -------------------- generateNeighborhood ------------------------
-/// generate the neighborhoods
-StructuralComponent * generateNeighborhood(StructuralComponent *sc) {
- // an iterator
- map<unsigned int, Cell*>::iterator it;
-
- // for each cells recreate neighborhoods
- for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
- // c is an hexahedron
- Cell *c = sc->getCell(i);
-
- switch(c->getType()) {
- case StructureProperties::TRIANGLE:
- if (c->getNumberOfStructures()!=3) {
- cout << "cell #" << c->getIndex() << " of type TRIANGLE does not contains 3 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // TRIANGLE
- // 1 facet: lines:
- // / \ 0,1,2 0,1
- // / \ 1,2
- // 2-----0 2,0
-
- // -- add atom 0 neighbors
- // get neighbors list for atom 0
- it = getIterator(c->getStructure(0)->getIndex());
- // it.second is the cell containing all the atoms that are neighbors of atom 0
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
-
- // -- add atom 1 neighbors
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- // -- add atom 2 neighbors
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- }
- break;
- case StructureProperties::QUAD:
- if (c->getNumberOfStructures()!=4) {
- cout << "cell #" << c->getIndex() << " of type QUAD does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // QUAD
- // 3--------2 lines:
- // | | 0,1
- // | | 1,2
- // | | 2,3
- // 0--------1 3,0
-
- // -- add atom 0 neighbors
- // get neighbors list for atom 0
- it = getIterator(c->getStructure(0)->getIndex());
- // it.second is the cell containing all the atoms that are neighbors of atom 0
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
-
- // -- add atom 1 neighbors
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- // -- add atom 2 neighbors
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
-
- // -- add atom 3 neighbors
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- }
- break;
- case StructureProperties::WEDGE:
- if (c->getNumberOfStructures()!=6) {
- cout << "cell #" << c->getIndex() << " of type WEDGE does not contains 6 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // WEDGE
- // 1-------------4 facets (quad): facets (triangles): lines:
- // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
- // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
- // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
- // \ \ \ \ 0,3 5,3
- // \ 2-----------\--5 1,4
- it = getIterator(c->getStructure(0)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
-
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
-
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
-
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- it = getIterator(c->getStructure(4)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
-
- it = getIterator(c->getStructure(5)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- }
- break;
-
- case StructureProperties::TETRAHEDRON:
- if (c->getNumberOfStructures()!=4) {
- cout << "cell #" << c->getIndex() << " of type TETRAHEDRON does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // tetrahedron are defined as follow:
- // 3 triangular base: 0,1,2
- // /| \ -
- // / | \ So to generate the neighborhodd,
- // 2__|___\1 we just have to loop on all the
- // \ | / atoms and add them their corresponding neigh
- // \ | / This is easy as in a tetrahedron all atoms
- // \|/ are neighbors to all atoms...
- // 0
- for (unsigned int j=0; j<4; j++) {
- // get current atom
- it = getIterator(c->getStructure(j)->getIndex());
- // add all others to its neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure((j+1)%4));
- (*it).second->addStructureIfNotIn(c->getStructure((j+2)%4));
- (*it).second->addStructureIfNotIn(c->getStructure((j+3)%4));
- }
- }
- break;
-
- case StructureProperties::HEXAHEDRON:
- if (c->getNumberOfStructures()!=8) {
- cout << "cell #" << c->getIndex() << " of type HEXAHEDRON does not contains 8 atoms (found only " << c->getNumberOfStructures() << "). Cell skiped." << endl;
- } else {
- // hexahedron are defined as follow:
- // 2-------------6
- // / \ / \ So to generate the neighborhood,
- // / \ / \ we just have to loop on all the
- // 1-----\-------5 \ atoms and add them their corresponding neigh
- // \ 3-------------7
- // \ / \ /
- // \ / \ /
- // 0-------------4
-
- // atom 0 is neigbor of atoms : 1, 3, 4
- it = getIterator(c->getStructure(0)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
-
- // atom 1 is neigbor of atoms : 0, 2, 5
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
-
- // atom 2 is neigbor of atoms : 1, 3, 6
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
-
- // atom 3 is neigbor of atoms : 0, 2, 7
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 4 is neigbor of atoms : 0, 5, 7
- it = getIterator(c->getStructure(4)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 5 is neigbor of atoms : 1, 4, 6
- it = getIterator(c->getStructure(5)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
-
- // atom 6 is neigbor of atoms : 2, 5, 7
- it = getIterator(c->getStructure(6)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 7 is neigbor of atoms : 3, 4, 6
- it = getIterator(c->getStructure(7)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
- }
- break;
- default:
- cout << "Cannot generate neighborhood for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
- break;
- }
- }
-
- // now that we have in neighMap all the neighborhoods, just add them in a new SC
- StructuralComponent *neigh = new StructuralComponent(NULL, "Neighborhoods");
-
- for (it=neighMap.begin(); it!=neighMap.end(); it++) {
- neigh->addStructure((*it).second);
- }
-
- return neigh;
-}
-
-// -------------------- All border facets ------------------------
-/// storing all the facets
-vector <Facet *> allFacets;
-
-// -------------------- equivalent ------------------------
-// check if equivalent of already existing facet
-void equivalent(int size, unsigned int id[]) {
- vector <Facet *>::iterator it;
-
- // look into allFacets for equivalence
- it = allFacets.begin();
- while (it!=allFacets.end() && !(*it)->testEquivalence(size, id))
- it++;
-
- // not found => insert
- if (it==allFacets.end())
- allFacets.push_back(new Facet(size,id));
-}
-
-
-// -------------------- generateExternalSurface ------------------------
-/// generate the outside surface
-MultiComponent * generateExternalSurface(StructuralComponent *sc) {
- // outside/external facets are facets that are used in only one element
-
- // for each cells update the counter
- for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
- // c is an hexahedron
- Cell *c = sc->getCell(i);
-
- // Facets have to be described in anticlockwise (trigonometrywise) when
- // looking at them from outside
- switch(c->getType()) {
- case StructureProperties::TRIANGLE: {
- // TRIANGLE (as viewed from outside)
- // 1 facet: lines:
- // / \ 0,1,2 0,1
- // / \ 1,2
- // 2-----0 2,0
- unsigned idT[3];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(1)->getIndex();
- idT[2]=c->getStructure(2)->getIndex();
- equivalent(3,idT);
- break;
- }
- case StructureProperties::QUAD: {
- // QUAD
- // 3--------2 lines:
- // | | 0,1
- // | | 1,2
- // | | 2,3
- // 0--------1 3,0
-
- unsigned idT[4];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(1)->getIndex();
- idT[2]=c->getStructure(2)->getIndex();
- idT[3]=c->getStructure(3)->getIndex();
- equivalent(4,idT);
- break;
- }
- case StructureProperties::WEDGE: {
- // WEDGE
- // 1-------------4 facets (quad): facets (triangles): lines:
- // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
- // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
- // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
- // \ \ \ \ 0,3 5,3
- // \ 2-----------\--5 1,4
- unsigned int idQ[4];
- idQ[0]=c->getStructure(2)->getIndex();
- idQ[1]=c->getStructure(5)->getIndex();
- idQ[2]=c->getStructure(4)->getIndex();
- idQ[3]=c->getStructure(1)->getIndex();
- equivalent(4,idQ);
-
- idQ[0]=c->getStructure(0)->getIndex();
- idQ[1]=c->getStructure(1)->getIndex();
- idQ[2]=c->getStructure(4)->getIndex();
- idQ[3]=c->getStructure(3)->getIndex();
- equivalent(4,idQ);
-
- idQ[0]=c->getStructure(2)->getIndex();
- idQ[1]=c->getStructure(0)->getIndex();
- idQ[2]=c->getStructure(3)->getIndex();
- idQ[3]=c->getStructure(5)->getIndex();
- equivalent(4,idQ);
-
- unsigned int idT[3];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(2)->getIndex();
- idT[2]=c->getStructure(1)->getIndex();
- equivalent(3,idT);
-
- idT[0]=c->getStructure(3)->getIndex();
- idT[1]=c->getStructure(4)->getIndex();
- idT[2]=c->getStructure(5)->getIndex();
- equivalent(3,idT);
- break;
- }
- case StructureProperties::TETRAHEDRON: {
- // tetrahedron are defined as follow:
- // 3
- // /| \ So to generate the facet list,
- // / | \ we just have to loop on all the
- // 1__|___\ 2 tetrahedron and add the corresponding 4 facets :
- // \ | / f0=0,1,2 f2=0,3,1
- // \ | / f1=0,2,3 f3=2,1,3
- // \|/
- // 0
- unsigned int id[3];
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(2)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(2)->getIndex();
- id[2]=c->getStructure(3)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(3)->getIndex();
- id[2]=c->getStructure(1)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(2)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(3)->getIndex();
- equivalent(3,id);
- break;
- }
-
- case StructureProperties::HEXAHEDRON: {
- // hexahedron are defined as follow:
- // 2-------------6
- // / \ . \ So to generate the facet list,
- // / \ / \ we just have to loop on all the
- // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
- // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
- // \ / \ / f1=0,4,7,3 f4=1,2,6,5
- // \ / . / f2=0,1,5,4 f5=4,5,6,7
- // 0-------------4
-
- unsigned int id[4];
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(3)->getIndex();
- id[2]=c->getStructure(2)->getIndex();
- id[3]=c->getStructure(1)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(4)->getIndex();
- id[2]=c->getStructure(7)->getIndex();
- id[3]=c->getStructure(3)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(5)->getIndex();
- id[3]=c->getStructure(4)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(3)->getIndex();
- id[1]=c->getStructure(7)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(2)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(1)->getIndex();
- id[1]=c->getStructure(2)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(5)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(4)->getIndex();
- id[1]=c->getStructure(5)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(7)->getIndex();
- equivalent(4,id);
- break;
- }
- default:
- cout << "Cannot generate sub facets for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
- break;
- }
- }
-
- // now that we have in facetMap all the facet and the number of times they have been used
- // just add in a new SC all the one that are used only once
- StructuralComponent *facet = new StructuralComponent(NULL, "extern");
-
- for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++) {
- //(*it)->debug();
- if ((*it)->getUsed()==1) // used only once
- facet->addStructure((*it)->getCell(sc->getPhysicalModel()));
- }
-
- // delete all facets
- for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++)
- delete (*it);
-
- // create the enclosed volume
- MultiComponent *mc = new MultiComponent(NULL, "Enclosed Volumes");
- mc->addSubComponent(facet);
-
- // return the SC
- return mc;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=2) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml" << endl;
- cout << "generates neighborhood and external surface information, output to: file-neighborhood.pml" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- cout << "-> please wait while reading " << filename << " for adding neighborhood/enclosed volumes" << endl;
- PhysicalModel pm(filename.c_str());
-
- // find the structural component "Elements" in the exclusive components
- Component * c = pm.getComponentByName("Elements");
- if (!c) {
- throw PMLAbortException("Cannot find any component named \"Elements\"");
- }
-
- // check if it is a correct one
- if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
- throw PMLAbortException("Cannot translate the \"Elements\" component: not exclusive or not a structural component.");
- }
-
- // check if c is made of hexahedron
- StructuralComponent *sc = (StructuralComponent *) c;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
- sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON &&
- sc->getCell(0)->getType()!=StructureProperties::WEDGE &&
- sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
- sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
- throw PMLAbortException("Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON, WEDGE, TRIANGLE, QUAD or TETRAHEDRON. Exiting");
- }
-
- // now, we have the right component, let's do some work...
- cout << "-> please wait while generating neighborhood" << endl;
- StructuralComponent * neighborhoods = generateNeighborhood(sc);
- cout << "-> please wait while generating external surface" << endl;
- MultiComponent * polyhedrons = generateExternalSurface(sc);
-
- // add the new SC to the informative component
- if (neighborhoods)
- pm.getExclusiveComponents()->addSubComponent(neighborhoods);
- if (polyhedrons)
- pm.getExclusiveComponents()->addSubComponent(polyhedrons);
-
- // save the result
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-neighborhood.pml";
- } else
- filename="neighborhood.pml";
-
- cout << "-> please wait while saving result in " << filename << endl;
-
- ofstream outputFile(filename.c_str());
- pm.setName(pm.getName()+" neighborhoods");
- // do not change cell and atom id
- pm.xmlPrint(outputFile,false);
-
-
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/extractCells/extractCells.cpp b/modeling/libraries/pml/tools/extractCells/extractCells.cpp
deleted file mode 100644
index e48b10f..0000000
--- a/modeling/libraries/pml/tools/extractCells/extractCells.cpp
+++ /dev/null
@@ -1,193 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-
-bool isIn(StructuralComponent *sc, Atom *a) {
- unsigned int i=0;
- bool found=false;
- while (i<sc->getNumberOfStructures() && !found) {
- found = (sc->getStructure(i)==a);
- i++;
- }
- return found;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=3 && argc!=4) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml \"c1\" \"c2\"" << endl;
- cout << "\t\tOnly select cells of component c1 of file.pml where all atoms are also in component c2, output to: file-extracted.pml (c2 is either component of file.pml or a separated csv file)" << endl;
- cout << "\t" << argv[0] << " file.pml \"c\"" << endl;
- cout << "\t\tSelect component c of file.pml, output to: component.pml (pseudo pml)" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- cout << "-> please wait while reading " << filename << " for extraction of ";
- string c1(argv[2]);
- string c2;
- if (argc==3) {
- cout << "component " << c1 << endl;
- } else if (argc==4) {
- c2 = argv[3];
- cout << "all cells in " << c1 << " having all atoms in " << c2 << endl;
- }
-
- PhysicalModel * pm = new PhysicalModel(filename.c_str());
-
- cout << "-> get " << c1 << endl;
-
- // get the component
- Component *cpt1 = pm->getComponentByName(c1);
- if (!cpt1) {
- throw PMLAbortException("No component named " + c1);
- }
-
- if (argc==3) {
- // save cpt
- string cptOutName(c1);
- cptOutName += ".pml";
- cout << "-> saving " << cptOutName << endl;
-
- ofstream cptOut(cptOutName.c_str());
- cpt1->xmlPrint(cptOut);
- cptOut.close();
- } else if (argc==4) {
- cout << "-> get " << c2 << endl;
-
- // atom list of c2
- StructuralComponent * atom2;
- atom2 = new StructuralComponent(NULL);
-
- // get the cell and build atom2
- Component *cpt2 = pm->getComponentByName(c2);
- if (!cpt2) {
- // try to open a file name c2 as csv
- cout << "-> cannot find component " << c2 << " trying to open file " << c2 << endl;
-
- // open the file
- ifstream atomList(c2.c_str());
-
- while (!atomList.eof()) {
- char l[200000];
- // read the next line
- if (atomList.getline(l,199999)) {
- // analyze
- std::stringstream line(l);
- unsigned int id;
- while ((line >> id)) {
- Atom *a = pm->getAtom(id);
- if (a)
- atom2->addStructureIfNotIn(a);
- }
- }
- }
- if (atom2->getNumberOfStructures()>0) {
- cout << "-> found " << atom2->getNumberOfStructures() << " atoms in file " << c2 << endl;
- } else {
- throw PMLAbortException("Cannot find any atoms in file " + c2);
- }
-
- } else {
- // cpt2 is found, just get all atoms in it
- for (unsigned int i=0; i<cpt2->getNumberOfCells(); i++) {
- Cell *c=cpt2->getCell(i);
- for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
- atom2->addStructureIfNotIn(c->getStructure(j));
- }
- cout << "-> found " << atom2->getNumberOfStructures() << " atoms in component " << c2 << endl;
- }
-
- // create the new component
- StructuralComponent * extracted;
- extracted = new StructuralComponent(pm, c1 + "/" + c2 +" extracted");
-
- // create atom list of atoms in cell
- cout << "-> please wait while extracting from " << c1 << " (" << cpt1->getNumberOfCells() << " cells)..." << endl;
-
- unsigned int ok=0;
- // check each cell and all atoms in the cell
- for (unsigned int i=0; i<cpt1->getNumberOfCells(); i++) {
- Cell *c = cpt1->getCell(i);
- unsigned int j=0;
- bool isOk = true;
- while (j<c->getNumberOfStructures() && isOk) {
- isOk = isOk && isIn(atom2, (Atom *)c->getStructure(j));
- j++;
- }
- if (isOk) {
- ok++;
- // copy the cell
- Cell *newCell = new Cell(pm,c->getType());
- for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
- newCell->addStructureIfNotIn(c->getStructure(j));
- extracted->addStructureIfNotIn(newCell);
- //cout << '\r' << c->Structure::getName() << endl;
- }
- cout << '\r' << (i+1) << "/" << ok;
- }
- cout << endl << "-> found " << ok << " matching cells, " << cpt1->getNumberOfCells() - ok << " excluded" << endl;
-
- // add the new SC to the informative component
- pm->getInformativeComponents()->addSubComponent(extracted);
-
- // save the result
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-extracted.pml";
- } else
- filename="extracted.pml";
-
- cout << "-> please wait while saving " << filename << " " << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" "+c1+"/"+c2+" Extracted");
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
- }
-
- delete pm;
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/genatoms/genatoms.cpp b/modeling/libraries/pml/tools/genatoms/genatoms.cpp
deleted file mode 100644
index 0ee9cb2..0000000
--- a/modeling/libraries/pml/tools/genatoms/genatoms.cpp
+++ /dev/null
@@ -1,137 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-//
-// C++ Implementation: genatoms
-//
-// Description: generate a simple pml containing only the atoms SC using a list of floats
-// in a text file (floats are considered as 3d coordinates xi yi zi)
-//
-// Input: a text file containing
-// x1 y1 z1
-// ...
-// xn yn zn...
-//
-// Output: the pml equivalent with n atoms
-//
-// Exemple of inputs:
-// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
-// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
-// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
-// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
-// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
-//
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <stdlib.h>
-
-using namespace std;
-
-int main(int argc, char ** argv) {
-
- if (argc<2) {
- cout << "Usage: " << argv[0] << " position.csv" << endl;
- exit(-1);
- }
- // open the noboite.txt file
- string filename(argv[1]);
- ifstream coordList(filename.c_str());
-
- // save the result in the pml file
- unsigned int pLast = filename.rfind(".");
- string basename = filename;
- if (pLast != string::npos) {
- basename.erase(pLast);
- filename = basename + "-out.pml";
- } else
- filename += "-out.pml";
- ofstream outputFile(filename.c_str());
- outputFile << "<!-- Created by genatoms (c) E Promayon, TIMC (c) 2005 -->" << endl;
- outputFile << "<physicalModel name=\"" << basename << "\" >" << endl;
-
- // vertices
- outputFile << "<atoms>" << endl;
- outputFile << "<structuralComponent name=\"vertices\">" << endl;
-
- double x, y, z;
- unsigned int i=1;
- while (coordList.good()) {
- // read position
- coordList >> x;
- if (coordList.good())
- coordList >> y;
- if (coordList.good()) {
- coordList >> z;
- // write atom
- outputFile << "<atom>" << endl;
- outputFile << "<atomProperties index=\"" << i << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
- outputFile << "</atom>" << endl;
- i++;
- }
- }
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</atoms>" << endl;
-
- // regions
- outputFile << "<exclusiveComponents>" << endl;
- outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
- /* outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
- outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
- for (unsigned int i=1; i<=nVertices; i++)
- outputFile << "<atomRef index=\"" << i << "\"/>" << endl;
- outputFile << "</cell>" << endl;
- outputFile << "</structuralComponent>" << endl;
-
- // tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
- unsigned int nTetra;
- nobox >> nTetra;
-
- outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
- outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- int id;
- for (unsigned int i=0;i<nTetra; i++) {
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties type=\"TETRAHEDRON\" />" << endl;
- for (unsigned int j=0; j<4; j++) {
- nobox >> id;
- outputFile << "<atomRef index=\"" << id << "\" />" << endl;
- }
- outputFile << "</cell>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;*/
- outputFile << "</multiComponent>" << endl;
- outputFile << "</exclusiveComponents>" << endl;
- outputFile << "<informativeComponents>" << endl;
- outputFile << "</informativeComponents>" << endl;
- outputFile << "</physicalModel>" <<endl;
-
- outputFile.close();
-
-}
diff --git a/modeling/libraries/pml/tools/gencells/gencells.cpp b/modeling/libraries/pml/tools/gencells/gencells.cpp
deleted file mode 100644
index 3bed168..0000000
--- a/modeling/libraries/pml/tools/gencells/gencells.cpp
+++ /dev/null
@@ -1,131 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-//
-// C++ Implementation: gencells
-//
-// Description:
-// if one arguments given: generate on stdout a structural component containing cells using a simple text file where each
-// line describes the atom indexes of a facet.
-// If two arguments given: generate a POLY_VERTEX cell using all atoms indexes between 1st arg and 2nd arg
-//
-// Input: a text file containing
-// ref0 ref1 ref2
-// ref3 ref5 ref4 ref18
-// ...
-//
-// Output: the pml structural component containing the cells
-//
-// Exemple of inputs:
-// 0 9 6
-// 1 0 6
-// 9 0 7
-// 0 3 5 4
-//
-// The output will be a structural component containing 4 cells, the first three cells are triangles, the
-// last one is a quad.
-//
-// Input : two arguments
-// Output : one pml cell containing all atoms between 1st and 2n arg
-//
-// Exemple of intputs:
-// 14 545
-// This will output a cell that uses atomRef 14, atomRef 15, atomRef 16... atomRef 545
-//
-
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <sstream>
-#include <vector>
-#include <stdlib.h>
-
-using namespace std;
-
-void genFromFile(string filename) {
- // open the input.txt file
- ifstream facetList(filename.c_str());
-
- // output to stdout
- cout << "<structuralComponent name=\"" << filename << "\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
- cout << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- while (!facetList.eof()) {
- char l[200000];
- // read the next line
- if (facetList.getline(l,199999)) {
- cout << "<cell>" << endl;
- // analyze
- std::stringstream line(l);
- std::vector<unsigned int> atomRefs;
- unsigned int id;
- while ((line >> id)) {
- atomRefs.push_back(id);
- }
- cout << "<cellProperties type=\"";
- switch (atomRefs.size()) {
- case 3:
- cout << "TRIANGLE";
- break;
- case 4:
- cout << "QUAD";
- break;
- default:
- cout << "POLY_VERTEX";
- break;
- }
- cout << "\"/>" << endl;
- for (unsigned int i=0; i<atomRefs.size(); i++)
- cout << "<atomRef index=\"" << atomRefs[i] << "\" />" << endl;
- cout << "</cell>" << endl;
- }
- }
-
- cout << "</structuralComponent>" << endl;
-}
-
-void genFromIndex(unsigned int start, unsigned int end) {
- // output to stdout
- cout << "<structuralComponent name=\"GenCell\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
- cout << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
- cout << "<cell>" << endl;
- cout << "<cellProperties type=\"POLY_VERTEX\"/>" << endl;
- for (unsigned int i=start; i<=end; i++)
- cout << "<atomRef index=\"" << i << "\" />" << endl;
- cout << "</cell>" << endl;
-}
-
-int main(int argc, char ** argv) {
- if (argc==3) {
- cout << "<!-- generating cell from indexes: " << argv[1] << " to " << argv[2] << " -->" << endl;
- genFromIndex(atoi(argv[1]), atoi(argv[2]));
- } else if (argc==2) {
- cout << "<!-- generating cell using " << argv[1] << " -->" << endl;
- genFromFile(argv[1]);
- } else {
- cout << argv[0] << ", usage:" << endl;
- cout << argv[0] << " [fileName | id_start id_end]" << endl;
- }
-
-}
diff --git a/modeling/libraries/pml/tools/gensphere/gensphere.cpp b/modeling/libraries/pml/tools/gensphere/gensphere.cpp
deleted file mode 100644
index 4555fc3..0000000
--- a/modeling/libraries/pml/tools/gensphere/gensphere.cpp
+++ /dev/null
@@ -1,323 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-#include <math.h>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-
-#include "../ansys2pml/programarg.h"
-
-// global parameters (command line arguments)
-string outputPML;
-int subdiv;
-PhysicalModel * pm;
-unsigned int atomIndex;
-StructuralComponent * elemSC;
-string shapeType;
-vector <double *> vertices;
-vector <unsigned int *> faces;
-
-// coordinates of one of the icosahedron vertex
-#define X 0.525731112119133696
-#define Z 0.850650808352039932
-
-// icosahedron vertices
-double icosahedronVertex[12][3] = {
- {-X, 0.0, Z}, {X, 0.0, Z}, {-X, 0.0, -Z}, {X, 0.0, -Z},
- {0.0, Z, X}, {0.0, Z, -X}, {0.0, -Z, X}, {0.0, -Z, -X},
- {Z, X, 0.0}, {-Z, X, 0.0}, {Z, -X, 0.0}, {-Z, -X, 0.0}
-};
-
-// icosahedron faces
-unsigned int icosahedronFace[20][3] = {
- {1,4,0}, {4,9,0}, {4,5,9}, {8,5,4}, {1,8,4},
- {1,10,8}, {10,3,8}, {8,3,5}, {3,2,5}, {3,7,2},
- {3,10,7}, {10,6,7}, {6,11,7}, {6,0,11}, {6,1,0},
- {10,1,6}, {11,0,9}, {2,11,9}, {5,2,9}, {11,2,7}
-};
-
-// coordinates of the cube vertices
-#define C 0.5773502691896257645
-
-// cube vertices
-double cubeVertex[8][3] = {
- {C, C, -C}, {C, C, C}, {C, -C, C}, {C, -C, -C},
- {-C, C, -C}, {-C, C, C}, {-C, -C, C}, {-C, -C, -C}
-};
-
-// cube faces
-unsigned int cubeFace[6][4] = {
- {0,1,2,3}, {0,4,5,1}, {1,5,6,2},
- {4,0,3,7}, {5,4,7,6}, {2,6,7,3}
-};
-
-// -------------------- processArg ------------------------
-void processArg() {
- outputPML = argVal["-o"];
- subdiv = atoi(argVal["-l"].c_str());
- shapeType = argVal["-t"];
- if (shapeType=="ico") {
- for (unsigned int i=0; i<12; i++)
- vertices.push_back(icosahedronVertex[i]);
- for (unsigned int i=0; i<20; i++)
- faces.push_back(icosahedronFace[i]);
- }
- if (shapeType=="cube") {
- for (unsigned int i=0; i<8; i++) {
- vertices.push_back(cubeVertex[i]);
- }
- for (unsigned int i=0; i<6; i++)
- faces.push_back(cubeFace[i]);
- }
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "gensphere generating " << outputPML << " using " << subdiv << " level" << "of shape " << shapeType << endl;
- cout << "The idea of subdvision is taken from the book of Frank Nielsen \"Visual Computing: Geometry, Graphics, and Vision\" , ISBN 1-58450-427-7, see http://www.charlesriver.com/visualcomputing" << endl;
-}
-
-// -------------------- newAtom ------------------------
-Atom * newAtom(double posA[3]) {
- // look for a similar atom (similar position)
- StructuralComponent *atoms = pm->getAtoms();
- bool found = false;
- unsigned int i=0;
- while (i<atoms->getNumberOfStructures() && !found) {
- double pos[3];
- ((Atom *)atoms->getStructure(i))->getPosition(pos);
- found = (sqrt((posA[0]-pos[0])*(posA[0]-pos[0]) + (posA[1]-pos[1])*(posA[1]-pos[1]) + (posA[2]-pos[2])*(posA[2]-pos[2])) < 1e-6);
- i++;
- }
- if (!found) {
- // new atom
- Atom *a = new Atom(pm, atomIndex, posA);
- pm->addAtom(a);
- atomIndex++;
- return a;
- } else {
- return ((Atom *)atoms->getStructure(i-1));
- }
-}
-
-// -------------------- normalize ------------------------
-// Vertices should belong to the unit sphere.
-// so we perform normalization
-void normalize(double v[3]) {
- double d = sqrt(v[0]*v[0] + v[1]*v[1] + v[2]*v[2]);
- if (d>1.0e-6) {
- v[0]/=d;
- v[1]/=d;
- v[2]/=d;
- }
-}
-
-// -------------------- subdivide (3) ------------------------
-// Recursively subdivide the sphere
-void subdivide(Atom *a1, Atom *a2, Atom *a3, int depth) {
- double v1[3], v2[3], v3[3];
- a1->getPosition(v1);
- a2->getPosition(v2);
- a3->getPosition(v3);
-
- if (depth == 0) {
- normalize(v1);
- a1->setPosition(v1);
- normalize(v2);
- a2->setPosition(v2);
- normalize(v3);
- a3->setPosition(v3);
-
- // insert a new cell
- Cell *c = new Cell(NULL, StructureProperties::TRIANGLE);
-
- // add atoms
- c->addStructure(a1);
- c->addStructure(a2);
- c->addStructure(a3);
-
- // add the cell to the informative and exclusive component
- elemSC->addStructure(c);
-
- } else {
- double v12[3], v23[3], v31[3];
- // midpoint
- for (unsigned int i = 0; i < 3; i++) {
- v12[i] = (v1[i]+v2[i])/2.0;
- v23[i] = (v2[i]+v3[i])/2.0;
- v31[i] = (v3[i]+v1[i])/2.0;
- }
-
- // lift midpoints on the sphere
- normalize(v12);
- normalize(v23);
- normalize(v31);
-
- // insert them in the atoms
- Atom *a12 = newAtom(v12);
- Atom *a23 = newAtom(v23);
- Atom *a31 = newAtom(v31);
-
- // subdivide new triangles in 4
- subdivide(a1, a12, a31, depth-1);
- subdivide(a2, a23, a12, depth-1);
- subdivide(a3, a31, a23, depth-1);
- subdivide(a12, a23, a31, depth-1);
- }
-}
-
-// -------------------- subdivide (4) ------------------------
-// Recursively subdivide the sphere
-void subdivide(Atom *a1, Atom *a2, Atom *a3, Atom *a4, int depth) {
- double v1[3], v2[3], v3[3], v4[3];
- a1->getPosition(v1);
- a2->getPosition(v2);
- a3->getPosition(v3);
- a4->getPosition(v4);
-
- if (depth == 0) {
- normalize(v1);
- a1->setPosition(v1);
- normalize(v2);
- a2->setPosition(v2);
- normalize(v3);
- a3->setPosition(v3);
- normalize(v4);
- a4->setPosition(v4);
-
- // insert a new cell
- Cell *c = new Cell(NULL, StructureProperties::QUAD);
-
- // add atoms
- c->addStructure(a1);
- c->addStructure(a2);
- c->addStructure(a3);
- c->addStructure(a4);
-
- // add the cell to the informative and exclusive component
- elemSC->addStructure(c);
-
- } else {
- double v12[3], v23[3], v34[3], v41[3], vc[3];
- // midpoint
- for (unsigned int i = 0; i < 3; i++) {
- v12[i] = (v1[i]+v2[i])/2.0;
- v23[i] = (v2[i]+v3[i])/2.0;
- v34[i] = (v3[i]+v4[i])/2.0;
- v41[i] = (v4[i]+v1[i])/2.0;
- vc[i] = (v1[i]+v2[i]+v3[i]+v4[i])/4.0;
- }
-
- // lift midpoints on the sphere
- normalize(v12);
- normalize(v23);
- normalize(v34);
- normalize(v41);
- normalize(vc);
-
- // insert them in the atoms
- Atom *a12 = newAtom(v12);
- Atom *a23 = newAtom(v23);
- Atom *a34 = newAtom(v34);
- Atom *a41 = newAtom(v41);
- Atom *ac = newAtom(vc);
-
- // subdivide new quad in 4
- subdivide( a1, a12, ac, a41, depth-1);
- subdivide(a12, a2, a23, ac, depth-1);
- subdivide( ac, a23, a3, a34, depth-1);
- subdivide(a41, ac, a34, a4, depth-1);
- }
-}
-
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
-
- processArg();
- printArg();
-
- try {
-
- // create a new physical model
- pm = new PhysicalModel();
- pm->setName("synthetic sphere subdiv " + argVal["-l"]);
- pm->setInformativeComponents(new MultiComponent(NULL, "Informative Components"));
-
- // create the new atom SC
- StructuralComponent * atoms = new StructuralComponent(pm, "Atoms");
- atomIndex=0;
-
- // starts with the the initial shape
- for (unsigned int i=0; i<vertices.size(); i++) {
- Atom *a = new Atom(pm, atomIndex, vertices[i]);
- atoms->addStructure(a);
- atomIndex++;
- }
-
- // add the atom list to the pml
- pm->setAtoms(atoms);
-
- // create the new element SC
- elemSC = new StructuralComponent(NULL, "Elements");
-
- // subdivide each face of the triangle
- for (unsigned int i=0; i<faces.size(); i++) {
- if (shapeType=="ico") {
- subdivide(pm->getAtom(faces[i][0]),
- pm->getAtom(faces[i][1]),
- pm->getAtom(faces[i][2]),
- subdiv);
- }
- if (shapeType=="cube") {
- subdivide(pm->getAtom(faces[i][0]),
- pm->getAtom(faces[i][1]),
- pm->getAtom(faces[i][2]),
- pm->getAtom(faces[i][3]),
- subdiv);
- }
- }
-
- // add the element list to the pml
- pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
- pm->getExclusiveComponents()->addSubComponent(elemSC);
-
- // save the result in the pml file
- ofstream outputFile(outputPML.c_str());
- pm->xmlPrint(outputFile);
-
- } catch(PMLAbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/insideout/insideout.cpp b/modeling/libraries/pml/tools/insideout/insideout.cpp
deleted file mode 100644
index 9e71abe..0000000
--- a/modeling/libraries/pml/tools/insideout/insideout.cpp
+++ /dev/null
@@ -1,123 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-
-bool isIn(StructuralComponent *sc, Atom *a) {
- unsigned int i=0;
- bool found=false;
- while (i<sc->getNumberOfStructures() && !found) {
- found = (sc->getStructure(i)==a);
- i++;
- }
- return found;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=3 && argc!=4) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml \"component\"" << endl;
- cout << "\tRevert inside/out a given component, i.e. turn TRIANGLE and QUAD facet orientation inside/out or outside/in, output to: file-insideout.pml" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- cout << "-> please wait while reading " << filename << " for reverting orientation of ";
- string c(argv[2]);
- cout << "component " << c << endl;
-
- PhysicalModel * pm = new PhysicalModel(filename.c_str());
-
- cout << "-> get " << c << endl;
-
- // get the component
- Component *cpt = pm->getComponentByName(c);
- if (!cpt) {
- throw PMLAbortException("No component named " + c);
- }
- if (!cpt->isInstanceOf("StructuralComponent")) {
- throw PMLAbortException("Component \"" + c +"\" is not a Structural Component");
- }
- StructuralComponent *sc=(StructuralComponent *) cpt;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
- sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
- throw PMLAbortException("Component \"" + c + "\": cannot revert component: does not contains any cell geometric type TRIANGLE or QUAD");
- }
-
- // Transform "inplace"
- for (unsigned int i=0; i<cpt->getNumberOfCells(); i++) {
- Cell *c=cpt->getCell(i);
- if (c->getType()==StructureProperties::TRIANGLE
- || c->getType()==StructureProperties::QUAD) {
- // copy structures
- vector <Structure *> copy;
- for (unsigned int j=0; j<c->getNumberOfStructures(); j++) {
- copy.push_back(c->getStructure(j));
- }
- c->deleteAllStructures();
- // invert
- for (int j=copy.size()-1; j>=0; j--) {
- c->addStructure(copy[j]);
- }
- }
- }
-
- // save the result
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-insideout.pml";
- } else
- filename="insideout.pml";
-
- cout << "-> please wait while saving " << filename << " " << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" reverted " + c);
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
-
- delete pm;
-
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/mooreNeighborhood/mooreNeighborhood.cpp b/modeling/libraries/pml/tools/mooreNeighborhood/mooreNeighborhood.cpp
deleted file mode 100644
index ca0e01d..0000000
--- a/modeling/libraries/pml/tools/mooreNeighborhood/mooreNeighborhood.cpp
+++ /dev/null
@@ -1,174 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc != 3 && argc!=4) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml d [vonNeumann]" << endl;
- cout << "create Moore neighborhood of distance d in a new exclusive structural component called \"Moore Neighborhood\", output to: file-Moore.pml" << endl;
- cout << "Ai is a Moore neighbor of distance d of Aj if Aix-Ajx<d and Aiy-Ajy<d and Aiz-Ajz<d" << endl;
- cout << "NOTE: to get von Neumann neighborhood, add vonNeumann as the thirs parameter (it will then use dist(ai,aj)<d as a criteria)" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- double mooreDist = atof(argv[2]);
- bool isMoore = true;
-
- if (argc == 4)
- isMoore = (string(argv[3]) != "vonNeumann");
-
- cout << "-> please wait while processing " << filename << " with d=" << mooreDist << endl;
-
- PhysicalModel * pm = new PhysicalModel(filename.c_str());
-
- // create the neigborhood
- StructuralComponent * moore;
-
- moore = new StructuralComponent(pm, "New Neighborhoods");
-
- // get all atoms
- StructuralComponent *sc = pm->getAtoms();
-
- Atom *a;
-
- double pos[3];
-
- Atom *n;
-
- double posn[3];
-
- Cell *nCell;
-
- unsigned int minN = UINT_MAX;
-
- unsigned int maxN = 0;
-
- unsigned int added = 0;
-
- // brute force neighborhood
- for (unsigned int i = 0; i < sc->getNumberOfStructures(); i++) {
- a = (Atom *) sc->getStructure(i);
- a->getPosition(pos);
-
- // create neighborhood cell
- nCell = new Cell(pm, StructureProperties::POLY_VERTEX);
- stringstream nCellName;
- nCellName << "Atom #" << a->getIndex();
- ((Structure*)nCell)->setName(nCellName.str());
-
- // check all other atoms!
-
- for (unsigned int j = 0; j < sc->getNumberOfStructures(); j++) {
- if (i != j) {
- n = (Atom *) sc->getStructure(j);
- n->getPosition(posn);
-
- if (isMoore) {
- if (fabs(posn[0] - pos[0]) <= mooreDist && fabs(posn[1] - pos[1]) <= mooreDist && fabs(posn[2] - pos[2]) <= mooreDist) {
- nCell->addStructure(n);
- added++;
- }
- } else {
- // von Neumann
- if (sqrt((posn[0] - pos[0])*(posn[0] - pos[0]) + (posn[1] - pos[1])*(posn[1] - pos[1]) + (posn[2] - pos[2])*(posn[2] - pos[2])) <= mooreDist) {
- nCell->addStructure(n);
- added++;
- }
- }
- }
- }
-
- unsigned int nNeigh = nCell->getNumberOfStructures();
-
- if (nNeigh > 0) {
- moore->addStructure(nCell);
- }
-
- if (minN > nNeigh)
- minN = nNeigh;
-
- if (maxN < nNeigh)
- maxN = nNeigh;
- }
-
- cout << "-> minN=" << minN << ", maxN=" << maxN << ", total: " << added << endl;
-
- // add the new SC to the exclusive component
- pm->getExclusiveComponents()->addSubComponent(moore);
-
- // save the result
- unsigned int pLast = filename.rfind(".");
-
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-";
- }
-
- if (isMoore)
- filename += "Moore.pml";
- else
- filename += "vonNeumann.pml";
-
- cout << "-> please wait while saving " << filename << endl;
-
- ofstream outputFile(filename.c_str());
- stringstream pmname(stringstream::out);
- pmname << pm->getName();
- if (isMoore)
- pmname << " Moore";
- else
- filename += " vonNeumann";
- pmname << " Neighborhoods d=" << mooreDist;
- pm->setName(pmname.str());
-
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
-
- cout << "WARNING: there is now two Exclusive component representing neighborhood : \"Neighborhoods\" (the old neighborhood) and \"New Neighborhoods\" (the generated moore/vonNeumann neighborhood), do not forget to remove the old one" << endl;
-
- delete pm;
- } catch (PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/nobox2pml/nobox2pml.cpp b/modeling/libraries/pml/tools/nobox2pml/nobox2pml.cpp
deleted file mode 100644
index 4602357..0000000
--- a/modeling/libraries/pml/tools/nobox2pml/nobox2pml.cpp
+++ /dev/null
@@ -1,366 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-//
-// C++ Implementation: nobox2pml
-//
-// Description:
-// WARNING: this is NOT a direct .noboite to PML translator !!!
-// the first argument is the name of a file (the nobox file) that you will have to arrange manually from the noboite.
-// The nobox format is as follow :
-// - nr of vertices (as given by the ghs3d command output) on the first line
-// - list of all coordinates (cut & paste the end part of the noboite to the beginning)
-// - nr of tetrahedra (as given by the ghs3d command output)
-// - and finally then the list of tetrahedra (the first part of the noboite file without the first garbage looking line)
-
-// here is an example of a nobox file:
-// 201
-// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
-// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
-// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
-// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
-// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
-// 204.927002 211.143997 65.9347992 204.996002 203.227005 63.8834991
-// 204.904999 197.218994 58.0499001 205.156998 195.229996 49.9992981
-// 204.904007 197.218002 41.9476013 204.994003 203.225998 36.1137009
-// 204.925995 211.143997 34.0623016 205.076996 218.942993 36.2391014
-// 205.117996 224.679993 42.0769997 195.733994 233.279999 49.9991989
-// 195.425995 231.682007 58.651001 195.128006 227.037003 65.908699
-// 194.822998 219.987 70.8787994 194.681 211.408997 72.7072983 194.744995
-// 202.714005 70.9886017 194.737 195.322006 66.1066971 194.841003
-// 190.419006 58.8510017 194.957001 188.701004 49.9998016 194.837997
-// 190.419006 41.1478004 194.733002 195.320999 33.8917999 194.740005
-// 202.712997 29.0091991 194.677994 211.406998 27.2901993 194.820999
-// 219.985992 29.1184006 195.126999 227.037003 34.0895996 195.425995
-// 231.682007 41.3474007 182.660004 238.115997 49.9992981 182.451996
-// 236.664993 58.9043999 182.085007 232.565994 66.7394028 181.636993
-// 226.253998 72.8107986 181.039993 218.354004 76.5053024 180.806
-// 209.505997 77.3675003 181.317993 200.705994 75.1343002 181.591995
-// 193.024002 70.060997 181.746994 187.490005 62.9435005 181.738007
-// 184.610001 54.4679985 181.735992 184.610001 45.5321999 181.742004
-// 187.490005 37.0563011 181.585007 193.024002 29.9388008 181.311996
-// 200.703003 24.8658009 180.802994 209.505005 22.6319008 181.039001
-// 218.352005 23.4941006 181.636002 226.253006 27.1879997 182.084
-// 232.565002 33.2593994 182.451004 236.664993 41.0942001 167.472
-// 240.304993 49.9994011 167.315994 238.871994 59.1222 166.912003
-// 234.809998 67.2751999 166.324997 228.537994 73.7573013 165.412003
-// 220.673004 77.9524994 163.651001 212.367996 79.447998 165.856003
-// 202.725006 77.8918991 166.429993 194.429001 73.637001 166.608002
-// 187.936996 67.093399 166.662003 183.886993 59.0017014 166.753998
-// 182.429001 50.0009003 166.658997 183.886993 41.0004005 166.602005
-// 187.936996 32.908699 166.423004 194.427994 26.3642006 165.848999
-// 202.725006 22.1098995 163.647995 212.365997 20.5538998 165.410995
-// 220.671005 22.0482006 166.324005 228.537003 26.2420998 166.910995
-// 234.809006 32.7238998 167.315994 238.871994 40.8764 151.835999
-// 239.468002 49.9996986 151.660004 237.951004 59.1351013 151.274002
-// 233.610992 67.2938004 150.830002 226.940994 73.6313019 150.115997
-// 218.690994 77.3936005 149.949997 209.399002 78.143898 150.544998
-// 200.186996 75.7360992 150.968002 192.516006 70.6867981 151.110992
-// 186.903 63.3594017 151.274994 183.906998 54.6599998 151.274002
-// 183.906998 45.3432999 151.106995 186.903 36.6436005 150.962006
-// 192.516006 29.3166008 150.539001 200.188004 24.2667007 149.944
-// 209.399994 21.8596992 150.113007 218.690994 22.6088009 150.828003
-// 226.940002 26.3701 151.272003 233.610992 32.7069016 151.660004
-// 237.951004 40.8646011 137.266006 235.638 50.0005989 137.052002
-// 233.746994 59.2244987 136.727997 228.546005 67.0988007 136.380997
-// 220.755997 72.3856964 136.190002 211.565002 74.2394028 136.380997
-// 202.220993 72.3259964 136.684998 194.445007 67.0942993 136.906998
-// 189.218994 59.2350998 137.018005 187.365005 50.0015984 136.906006
-// 189.220001 40.767601 136.682007 194.447006 32.9085007 136.378006
-// 202.223007 27.6765995 136.186005 211.567001 25.7646008 136.378998
-// 220.757996 27.6180992 136.727005 228.546997 32.9045982 137.052002
-// 233.748001 40.7779999 125.139 229.164001 50.0024986 124.925003
-// 226.662003 58.8370018 124.797997 220.257996 65.3336029 124.700996
-// 211.386993 67.7137985 124.739998 202.552994 65.2739029 124.971001
-// 196.110001 58.8339996 125.170998 193.675995 50.0007019 124.971001
-// 196.112 41.167099 124.737999 202.557007 34.7289009 124.698997
-// 211.391006 32.2905998 124.796997 220.261993 34.6725006 124.926003
-// 226.664001 41.1697998 116.166 220.483002 50.0068016 116.230003
-// 215.843994 58.0330009 116.362 206.574005 58.0284996 116.43 201.942001
-// 49.9977989 116.365997 206.580994 41.9715004 116.234001 215.852005
-// 41.9760017 114.734001 210.878006 49.9991989 174.122116 217.068161
-// 31.7504559 172.845322 217.308792 48.5277519 167.153168 214.523697
-// 39.7758484 181.559479 210.526749 34.7726517 188.018204 215.87796
-// 39.7380791 184.143738 224.294205 42.0575256 197.055756 214.458328
-// 38.7829208 194.991425 210.800476 54.7543221 193.28717 202.241409
-// 40.9057541 204.158218 205.777817 50.9520607 197.350235 221.431885
-// 46.0859756 205.353348 213.013306 46.1315346 136.512878 212.353867
-// 63.7603073 136.803589 212.550674 48.2269096 137.144806 220.346344
-// 61.4673576 145.934494 210.935974 55.5667152 147.122406 219.049301
-// 65.7673264 127.637863 213.684891 57.7648048 155.055756 219.283691
-// 57.2817078 157.627609 218.691803 68.3738556 158.877777 227.444443
-// 60.4090767 157.239014 214.618912 42.7295799 150.678391 224.44072
-// 42.8708191 156.86319 228.042023 52.577179 167.16449 229.505142
-// 47.8503952 166.877808 224.886551 59.4400215 167.344315 209.241409
-// 57.7920151 156.016373 211.103333 65.0439377 125.501251 217.264023
-// 49.4178391 144.429642 209.962738 39.080452 130.778366 213.858948
-// 40.0691223 140.463333 222.008209 39.4355965 139.815598 225.72168
-// 49.4672127 136.28949 202.349487 41.0455284 145.962448 195.281769
-// 48.8271103 147.488693 198.23613 37.7950897 136.704361 200.614502
-// 59.242939 150.481583 199.411041 60.4735184 152.468857 198.37587
-// 45.7318878 157.677902 191.62085 51.4769325 196.616882 218.971909
-// 57.1982651 204.238693 213.30249 54.1141624 159.744888 232.552795
-// 43.8564072 168.660782 225.179016 37.9129562 191.862534 205.648514
-// 62.5157318 180.80452 209.505508 49.9997406 183.883865 197.143555
-// 56.6907158 145.60112 228.086609 57.396431 175.108383 231.910431
-// 53.4562454 175.68959 225.918808 59.6542206 185.944397 224.478149
-// 56.2026367 174.792694 192.130005 49.9737282 174.053543 196.442856
-// 37.7757225 182.502289 197.298569 48.2248764 166.223877 195.831894
-// 42.2486687 173.008575 202.979706 46.7984734 166.829437 195.548477
-// 57.1409531 157.996948 207.388916 32.52491 171.89621 216.18663
-// 67.2036209 173.671951 200.933304 66.221962 180.062073 210.119934
-// 64.1635513 187.354813 211.602554 65.3569107 194.980927 199.277191
-// 52.4201088 123.912224 207.559799 50.1583328 158.063065 201.043579
-// 66.0226746 157.567657 206.597137 51.0658493 183.447632 200.285034
-// 38.0877419 169.998138 205.641113 32.1545448 136.224457 199.33667
-// 50.2796478 159.975189 221.28949 31.02672 144.484528 214.412399
-// 33.054985 146.594879 207.633087 66.7936783 158.706665 193.814636
-// 36.3628883
-// 764
-// 129 130 131 132 133 129 130 134 129 133 132 51 135 133 32 31 135 136 137 138
-// 135 136 139 133 135 18 139 140 135 138 137 16 135 16 137 31 141 142 143 144 141
-// 98 145 97 141 146 112 143 147 148 149 145 147 150 144 151 130 147 152 150 150
-// 130 153 152 154 147 152 130 147 155 130 154 156 154 155 147 141 143 142 146 142
-// 146 143 157 142 158 159 160 142 160 157 161 162 163 164 158 163 144 165 166 166
-// 163 101 165 85 86 103 163 163 144 166 167 83 163 101 166 84 163 168 85 163 168
-// 167 166 84 163 83 168 163 83 168 166 169 8 170 140 171 172 151 92 171 172 92 73
-// 136 173 174 175 171 172 73 74 171 55 152 153 171 153 74 55 176 145 77 96 143
-// 144 147 145 161 144 147 143 147 143 176 161 161 152 75 176 176 161 94 75 176 76
-// 152 75 147 176 145 149 149 76 57 56 149 145 148 78 147 152 149 154 149 154 56
-// 57 149 78 148 58 149 58 154 57 177 153 74 54 177 178 57 154 177 153 54 134 177
-// 134 130 153 178 177 37 179 177 153 56 55 130 154 178 177 180 181 182 47 180 181
-// 183 184 180 64 185 65 180 65 183 66 180 182 45 46 180 184 183 185 168 185 65
-// 183 131 183 150 186 187 61 188 41 187 178 58 39 178 187 189 39 187 40 60 41 178
-// 189 179 39 187 188 189 41 190 25 173 24 24 173 136 11 136 179 174 190 169 190
-// 23 179 190 40 189 41 133 134 34 52 179 190 23 39 40 39 190 189 13 191 12 138
-// 192 159 162 118 142 192 165 146 187 156 155 193 136 12 170 11 136 138 191 137
-// 179 174 190 189 136 179 133 174 136 169 11 170 136 190 174 173 136 137 174 133
-// 130 131 132 184 129 172 130 134 172 130 150 131 131 130 150 184 130 150 184 194
-// 49 195 31 132 130 189 155 174 189 155 187 130 196 181 49 195 196 49 181 68 129
-// 131 196 132 192 159 118 126 142 165 192 197 196 186 131 70 196 50 132 49 186
-// 198 70 90 167 150 144 194 150 199 198 186 151 150 199 198 186 90 199 198 186 88
-// 199 89 186 150 199 158 194 130 147 155 158 186 150 167 150 131 198 172 150 199
-// 158 151 147 150 194 144 200 98 99 80 129 196 50 132 129 172 72 198 192 197 115
-// 116 129 132 50 51 196 186 183 131 131 184 150 183 186 201 68 196 196 186 69 68
-// 186 150 131 198 130 174 132 133 88 201 68 186 194 155 156 166 150 194 130 147
-// 147 194 155 156 158 167 150 144 130 174 155 184 135 136 138 140 147 194 156 144
-// 155 174 175 184 130 155 187 154 161 110 94 109 194 184 185 183 142 151 161 144
-// 142 197 162 144 162 144 158 142 28 27 175 45 144 197 162 163 193 156 80 60 187
-// 193 155 188 193 82 166 83 155 193 185 188 80 193 200 156 178 179 38 39 193 156
-// 166 200 135 140 16 17 144 145 200 156 176 95 143 96 145 143 97 96 145 79 156
-// 148 147 176 149 152 196 183 186 201 67 68 201 183 196 181 183 68 196 181 184
-// 183 180 181 66 183 181 49 195 48 181 66 183 67 180 181 184 182 180 44 185 64
-// 201 168 85 66 194 167 168 166 168 185 64 65 167 168 85 201 194 183 168 167 168
-// 66 183 65 175 44 26 43 175 174 136 191 175 184 180 185 155 175 174 189 133 130
-// 179 134 190 174 173 189 187 193 60 156 184 150 183 194 147 150 151 152 152 130
-// 153 154 147 161 176 152 172 129 52 134 194 168 183 185 196 132 184 195 181 184
-// 182 195 193 83 185 63 194 185 155 166 186 158 164 167 194 166 168 185 168 201
-// 183 66 168 201 167 183 201 183 66 67 68 181 183 67 201 164 88 87 168 83 185 166
-// 177 56 154 57 177 130 179 178 130 178 189 179 187 59 39 58 178 154 58 57 200
-// 166 100 165 141 200 99 165 187 156 60 148 81 80 193 200 144 166 200 165 141 144
-// 200 165 141 142 144 165 141 97 145 143 199 158 105 88 186 158 199 88 85 201 86
-// 167 169 22 10 9 199 91 151 198 108 160 107 91 160 107 91 199 199 159 107 106
-// 158 164 105 88 186 164 158 88 160 159 107 199 200 99 81 80 188 63 44 43 135 34
-// 133 139 33 135 34 133 135 32 133 33 133 137 31 135 133 32 132 51 133 139 34 134
-// 174 184 132 195 133 179 139 134 135 138 16 140 138 137 15 191 138 140 6 16 138
-// 13 191 14 138 6 140 1 138 191 15 14 188 44 185 175 140 6 7 1 62 63 193 188 187
-// 155 189 188 43 189 175 188 176 76 149 152 141 97 143 112 187 130 178 189 188
-// 189 41 42 155 185 193 166 192 118 162 117 158 159 199 105 169 23 11 10 159 158
-// 199 160 159 157 121 127 150 152 153 151 174 133 130 179 179 134 36 20 177 179
-// 36 37 177 153 154 56 196 132 131 184 139 179 20 134 174 137 195 132 144 158 167
-// 163 171 172 74 153 191 29 14 28 199 160 151 91 171 151 172 153 182 175 184 180
-// 180 181 47 66 168 185 83 64 166 100 82 200 163 168 85 167 174 175 184 182 174
-// 184 195 182 180 185 44 175 147 148 156 154 188 185 44 63 177 134 54 36 172 134
-// 53 54 177 179 130 134 177 179 134 36 191 175 173 136 170 11 4 3 155 166 193 156
-// 151 152 75 161 149 148 154 58 130 174 184 132 166 200 82 193 187 193 61 60 187
-// 59 148 60 189 179 39 190 187 154 155 156 177 130 154 153 12 170 138 136 195 182
-// 47 29 181 48 195 47 167 186 150 183 185 65 183 180 163 165 197 101 192 157 128
-// 123 163 162 164 103 194 155 185 184 165 166 100 101 164 167 163 86 163 197 162
-// 103 152 153 55 56 176 94 161 95 163 101 197 102 192 159 127 157 142 161 157 143
-// 141 142 165 146 142 159 192 157 192 123 146 157 160 159 157 121 161 143 95 111
-// 161 93 151 109 160 161 151 109 118 159 105 119 192 162 197 117 138 15 6 5 160
-// 151 161 142 176 145 96 143 176 161 143 95 161 157 110 121 194 166 144 167 72
-// 172 92 198 186 89 199 90 172 153 54 74 130 174 179 189 198 91 71 90 146 112 143
-// 111 199 158 151 160 163 86 103 164 63 193 188 185 194 144 166 156 79 156 60 80
-// 145 200 79 98 149 145 78 77 145 148 78 79 197 162 103 117 39 187 189 40 170 9
-// 10 3 192 114 146 124 193 166 185 83 148 187 154 58 193 82 62 81 141 112 146 113
-// 181 195 182 47 191 28 182 29 141 113 146 114 151 198 91 92 192 127 159 126 193
-// 60 80 61 154 130 178 187 149 58 77 78 148 60 59 79 190 41 189 42 169 179 21 20
-// 190 173 42 189 139 35 134 20 139 134 35 34 139 8 140 19 140 7 2 1 135 136 133
-// 137 196 132 195 49 174 195 137 182 138 5 1 4 170 1 2 3 169 21 22 9 192 157 127
-// 128 179 39 22 38 132 133 129 130 140 7 18 19 135 33 17 32 157 122 111 110 146
-// 124 113 123 192 125 116 115 192 126 117 125 159 119 127 120 159 127 119 126 192
-// 117 126 118 137 29 191 182 192 125 128 126 197 115 116 101 159 118 126 119 159
-// 127 121 120 146 111 123 112 157 123 111 122 192 115 124 125 201 167 183 186 192
-// 126 128 127 173 11 25 12 197 117 103 116 160 108 120 121 170 3 4 1 161 121 110
-// 109 52 172 53 72 159 106 119 107 157 127 128 122 172 151 92 198 160 107 120 108
-// 139 136 179 133 11 24 169 136 162 118 159 105 162 118 105 104 148 79 156 60 137
-// 182 195 29 157 122 110 121 129 130 172 131 159 199 105 106 199 107 90 106 146
-// 113 124 114 129 196 70 50 186 198 131 70 146 123 113 112 170 9 3 2 165 114 100
-// 99 192 116 125 117 143 96 111 112 129 70 198 71 187 59 60 40 161 111 95 110 179
-// 21 37 38 145 97 79 78 145 77 96 78 192 124 115 114 157 122 121 127 145 98 79 97
-// 192 123 128 124 160 92 91 108 160 92 108 109 109 94 161 93 199 106 90 89 160
-// 121 109 108 197 116 103 102 188 175 43 44 129 134 133 52 165 115 101 100 162
-// 104 103 117 101 166 100 83 199 106 89 105 159 107 119 120 164 105 87 104 164 88
-// 87 105 145 78 96 97 162 104 117 118 190 42 25 41 169 139 136 179 195 31 132 137
-// 86 167 163 85 141 113 114 99 196 49 69 50 165 114 115 100 193 83 63 82 141 97
-// 113 98 132 137 31 133 173 174 175 189 129 72 52 71 144 158 142 151 144 156 200
-// 166 164 104 87 86 192 124 146 123 141 112 113 97 139 140 169 136 192 146 114
-// 165 200 100 82 99 176 96 77 95 147 144 161 151 148 78 59 58 176 95 76 94 192
-// 197 165 115 151 109 93 92 174 137 191 182 171 93 74 73 163 102 84 101 198 71 91
-// 72 183 68 201 196 196 186 70 69 163 197 103 102 140 169 136 170 136 11 173 12
-// 68 186 69 88 169 179 22 21 198 90 71 70 73 72 172 92 23 179 22 169 195 48 30 47
-// 150 172 198 151 186 90 70 89 25 190 173 42 169 9 170 8 170 140 8 2 163 101 84
-// 83 172 73 53 72 199 88 105 89 143 111 96 95 200 82 193 81 66 201 86 85 201 86
-// 67 66 188 42 43 189 157 122 128 123 174 133 137 132 168 84 64 83 136 12 173 191
-// 93 75 151 171 176 75 94 76 153 172 130 150 166 82 100 83 142 162 192 159 161
-// 110 95 94 99 200 81 82 169 190 24 23 197 116 102 101 143 96 112 97 12 191 26
-// 173 148 79 59 78 200 79 98 80 196 131 183 184 26 43 25 173 163 84 102 85 138
-// 170 4 1 187 41 189 40 193 81 61 80 191 27 175 28 26 191 175 173 176 95 77 76 37
-// 56 36 177 191 12 138 136 56 36 177 55 4 12 170 138 171 93 73 92 54 73 172 74
-// 171 92 151 93 190 169 136 179 152 154 56 149 153 152 154 56 140 8 2 19 75 151
-// 171 152 129 50 70 51 196 70 50 69 171 93 75 74 171 152 151 153 75 93 151 161
-// 191 28 14 27 93 94 161 75 164 104 86 103 192 128 125 124 150 172 151 153 171 75
-// 152 55 201 87 67 86 201 87 88 68 161 111 157 143 176 149 77 145 79 156 200 145
-// 159 106 105 119 161 110 157 111 199 107 91 90 163 144 158 162 142 158 162 159
-// 129 71 52 51 168 84 85 65 186 89 69 88 72 129 52 172 145 143 176 147 147 145
-// 156 148 175 180 45 44 179 38 22 21 196 68 69 49 181 67 68 48 138 4 13 5 180 66
-// 46 65 155 184 175 185 152 56 55 75 133 33 52 34 193 82 63 62 193 61 81 62 200
-// 99 165 100 186 89 70 69 155 188 175 189 54 36 74 177 175 28 182 191 182 175 180
-// 45 31 133 32 132 45 28 182 175 137 30 195 31 140 17 7 6 57 177 37 178 129 131
-// 172 198 129 71 198 72 158 159 105 162 187 39 59 40 176 77 149 76 178 57 58 38
-// 186 201 167 164 177 74 153 55 149 56 152 76 178 38 58 39 149 57 76 77 187 154
-// 58 178 179 178 38 37 160 159 120 107 160 109 151 92 160 161 109 121 163 103 85
-// 102 183 167 194 150 150 158 144 151 53 54 73 172 151 158 142 160 182 47 29 46
-// 135 31 17 16 155 188 185 175 180 65 46 45 134 35 54 20 134 34 53 35 185 64 44
-// 63 168 65 85 66 180 46 66 47 133 51 33 32 160 159 121 120 160 161 121 157 142
-// 157 160 159 139 20 8 35 138 15 137 16 180 64 45 44 129 133 51 52 132 31 50 32
-// 134 54 35 53 36 74 177 55 141 200 145 98 138 14 5 13 134 172 53 52 169 8 21 9
-// 190 40 23 39 130 134 172 153 160 151 91 92 198 92 72 91 173 12 25 26 181 47 67
-// 48 187 193 188 61 195 49 31 48 187 58 148 59 147 154 149 148 195 29 47 30 39
-// 179 22 23 137 29 30 15 182 29 28 46 180 65 45 64 170 11 3 10 129 70 196 131 37
-// 178 38 57 175 44 27 26 168 84 65 64 132 50 31 49 195 30 48 31 199 198 90 91 136
-// 24 169 190 188 62 43 42 43 175 173 26 193 62 188 61 149 77 58 57 135 33 34 18
-// 179 37 20 36 182 45 46 28 173 43 25 42 189 42 43 173 163 165 144 197 181 48 68
-// 49 190 41 25 24 136 191 174 137 56 57 177 37 190 173 136 24 27 26 191 175 188
-// 61 62 42 190 23 40 24 141 113 99 98 23 169 11 24 152 56 75 76 190 41 24 40 169
-// 20 139 179 169 8 139 20 169 140 139 8 135 139 136 140 187 41 60 61 134 34 52 53
-// 147 145 144 156 179 20 37 21 139 19 140 18 171 55 74 75 135 140 17 18 135 139
-// 18 34 137 15 191 29 138 170 1 140 170 140 2 1 169 170 10 11 136 138 140 170 139
-// 19 35 8 135 32 17 31 169 10 22 23 134 20 54 36 169 20 21 8 135 33 18 17 132 51
-// 32 50 140 18 7 17 129 131 198 70 138 1 5 6 181 67 47 66 169 10 170 9 80 79 156
-// 200 170 2 8 9 139 34 35 19 137 31 16 30 138 16 6 15 137 30 16 15 188 42 41 61
-// 172 54 153 134 138 5 14 15 142 192 146 157 191 13 27 14 170 12 4 11 191 14 29
-// 15 147 151 161 152 191 26 27 13 180 47 182 46 186 201 164 88 137 29 195 30 196
-// 181 195 184 165 197 101 115 201 87 68 67 141 165 99 114 141 145 144 143 173 189
-// 175 43 142 192 162 197 192 165 114 115 185 63 83 64 138 4 12 13 13 12 191 26
-// 154 148 156 187 164 104 162 105 146 157 123 111 201 86 164 87 173 25 11 24 201
-// 164 86 167 163 164 158 167 192 117 197 116 175 45 27 44 158 164 162 105 129 71
-// 51 70 164 103 162 104 133 52 33 51 141 114 146 165 142 143 144 161 146 157 111
-// 143 182 174 175 191 141 200 98 99 140 16 17 6 140 19 2 7 139 18 34 19 188 63 43
-// 62 184 155 130 194 141 144 145 200 142 197 144 165
-
-#include <iostream>
-#include <string>
-#include <fstream>
-
-using namespace std;
-
-int main(int argc, char ** argv) {
-
- // open the noboite.txt file
- string filename(argv[1]);
- ifstream nobox(filename.c_str());
-
- // save the result in the pml file
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-out.pml";
- } else
- filename += "-out.pml";
- ofstream outputFile(filename.c_str());
- outputFile << "<!-- Created by npbox2pml (c) E Promayon, TIMC (c) 1997-2005 -->" << endl;
- outputFile << "<physicalModel name=\"from ghs3d\" >" << endl;
-
- // vertices
- unsigned int nVertices;
- nobox >> nVertices;
-
- outputFile << "<atoms>" << endl;
- outputFile << "<structuralComponent name=\"vertices\">" << endl;
-
- double x, y, z;
- for (unsigned int i=1; i<=nVertices; i++) {
- // read position
- nobox >> x;
- nobox >> y;
- nobox >> z;
- // write atom
- outputFile << "<atom>" << endl;
- outputFile << "<atomProperties index=\"" << i << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
- outputFile << "</atom>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</atoms>" << endl;
-
- // regions
- outputFile << "<exclusiveComponents>" << endl;
- outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
- outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
- outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
- for (unsigned int i=1; i<=nVertices; i++)
- outputFile << "<atomRef index=\"" << i << "\"/>" << endl;
- outputFile << "</cell>" << endl;
- outputFile << "</structuralComponent>" << endl;
-
- // tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
- unsigned int nTetra;
- nobox >> nTetra;
-
- outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
- outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- int id;
- for (unsigned int i=0; i<nTetra; i++) {
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties type=\"TETRAHEDRON\" />" << endl;
- for (unsigned int j=0; j<4; j++) {
- nobox >> id;
- outputFile << "<atomRef index=\"" << id << "\" />" << endl;
- }
- outputFile << "</cell>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</multiComponent>" << endl;
- outputFile << "</exclusiveComponents>" << endl;
- outputFile << "</physicalModel>" <<endl;
-
- outputFile.close();
-
-}
diff --git a/modeling/libraries/pml/tools/obj2pml/obj2pml.cpp b/modeling/libraries/pml/tools/obj2pml/obj2pml.cpp
deleted file mode 100644
index 08c2ff7..0000000
--- a/modeling/libraries/pml/tools/obj2pml/obj2pml.cpp
+++ /dev/null
@@ -1,274 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// obj format description: http://www.cs.huji.ac.il/~danix/modeling/Format_Obj.html
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-
-// the input .obj file
-std::ifstream objStream;
-PhysicalModel *pm;
-unsigned lineNr;
-bool eof;
-
-// a .obj line
-typedef struct {
- string directive;
- string data;
- bool ok;
-} ObjLine;
-
-ObjLine currentLine;
-
-// -------------------- getNext ------------------------
-// get the next current line
-void getNext() {
- char l[200];
- string line;
- currentLine.ok = false;
-
- while (!eof && !currentLine.ok) {
- eof = !(objStream.getline(l,199));
- lineNr++;
- if (l[0]!='#') {
- line = l;
-
- unsigned int space = line.find(' ');
- if (space != string::npos && space != 0) {
- currentLine.directive = line.substr(0,space);
- currentLine.data = line.substr(space+1);
- currentLine.ok = true;
- }
- }
- }
-
-}
-
-// -------------------- getVector ------------------------
-// get the double 3D vector in the current data
-void getVector(double d[3]) {
- stringstream data(currentLine.data, std::stringstream::in);
-
- for (unsigned int i=0; i<3; i++)
- data >> d[i];
-}
-
-// -------------------- getFacetType ------------------------
-// return 3 for triangular facets and 4 for quadrangular facets, 0 if there is an error
-// current data is something like "vertexId/textureId/normalId vertexId/textureId/normalId..."
-unsigned int getFacetType() {
- int count=0;
- unsigned int space = 0;
-
- do {
- space = currentLine.data.find(' ', space+1);
- if (space != string::npos)
- count++;
- } while (space != string::npos);
-
- return count+1;
-}
-
-// -------------------- getVertex ------------------------
-// get the vertex list {i0, j0, k0} in a facet directive data "i0/j0/k0 i1/j1/k1 i2/j2/k2"
-void getVertex(unsigned int size, int v[]) {
- stringstream data(currentLine.data, std::stringstream::in);
- string buff;
-
- for (unsigned int i=0; i<size; i++) {
- data >> buff; // buff is of the form "4/4" or "2/33/32" or "4"
- unsigned int slash = buff.find('/');
- //if (slash != string::npos) {
- v[i] = atoi(buff.substr(0,slash).c_str());
- //}
- }
-}
-
-
-// -------------------- vertexToAtoms ------------------------
-StructuralComponent * vertexToAtoms() {
- StructuralComponent * atoms = new StructuralComponent(NULL, "Atoms");
- double pos[3];
- unsigned int atomIndex;
-
- // very important: start at 1 to have the same index system
- atomIndex=1;
-
- // go to the first v directive
- while (!eof && currentLine.directive!="v") {
- getNext();
- }
-
- do {
- if (currentLine.ok && currentLine.directive=="v") {
- getVector(pos);
- atoms->addStructure(new Atom(NULL, atomIndex++, pos));
- }
- getNext();
- } while (!eof);
-
- cout << "Found atom #1 to #" << atomIndex << endl;
-
- return atoms;
-}
-
-// -------------------- facetsToSC ------------------------
-void facetsToSC(MultiComponent *mother) {
- StructuralComponent * group = new StructuralComponent(NULL, "Facets");
- int * vertex;
- Cell *c;
- unsigned int type;
-
- // go to the first f directive
- while (!eof && currentLine.directive!="f" && currentLine.directive!="g" && currentLine.directive!="o") {
- getNext();
- }
-
- // process f directives
- do {
- if (currentLine.ok && (currentLine.directive=="g" || currentLine.directive=="o")) {
- // insert the current group if exists
- if (group->getNumberOfStructures()>0)
- mother->addSubComponent(group);
- // create a new group
- group = new StructuralComponent(NULL, currentLine.data);
- }
- if (currentLine.ok && currentLine.directive=="f") {
- // create cell depending on type
- type = getFacetType();
- switch (type) {
- case 3:
- c = new Cell(NULL, StructureProperties::TRIANGLE);
- break;
- case 4:
- c = new Cell(NULL, StructureProperties::QUAD);
- break;
- default:
- c=NULL;
- cerr << "line " << lineNr << ": error: cannot manage facet using " << type << " vertices" << endl;
- break;
- }
-
- if (c!=NULL) {
- // get atom indexes
- vertex = new int[type];
- getVertex(type, vertex);
-
- // add atoms
- for (unsigned int i=0; i<type; i++) {
- Atom *a = pm->getAtom(vertex[i]);
- if (a!=NULL)
- c->addStructure(a);
- else
- cerr << "line " << lineNr << ": error: cannot find vertex #" << vertex[i] << endl;
- }
-
- // add facet to current group
- group->addStructure(c);
-
- delete [] vertex;
- }
- }
-
- // go to the next directive
- getNext();
- } while (!eof);
-
- // insert the current group if exists
- if (group->getNumberOfStructures()>0)
- mother->addSubComponent(group);
-
- cout << "Found " << mother->getNumberOfSubComponents() << " groups, total " << mother->getNumberOfCells() << " facets" << endl;
-}
-
-// -------------------- init ------------------------
-void init() {
- currentLine.ok = false;
- eof = false;
- lineNr = 0;
-}
-
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=2) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.obj" << endl;
- cout << "if file.obj is a valid Wavefront OBJ format, then a corresponding file.pml is created" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
-
- // open the obj file
- string filename(argv[1]);
- objStream.open(filename.c_str());
- if (!objStream.is_open()) {
- cerr << "Error: cannot open file " << filename << endl;
- exit(1);
- }
- init();
-
- // create a new physical model
- pm = new PhysicalModel();
- pm->setName("PML for " + filename);
-
- // first pass: read the vertex, and build atoms
- pm->setAtoms(vertexToAtoms());
-
- // rewind
- objStream.clear(); // clear the ios::eof flag, etc...
- objStream.seekg(0,ios::beg); // rewind
- init();
-
- // second pass: read the facets and build the corresponding SC
- pm->setExclusiveComponents(new MultiComponent(NULL, "Exclusive Components"));
- facetsToSC(pm->getExclusiveComponents());
- // close input
- objStream.close();
-
- // save the result in the pml file
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += ".pml";
- } else
- filename += ".pml";
- ofstream outputFile(filename.c_str());
- pm->xmlPrint(outputFile);
-
- } catch(PMLAbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/optimizeMesh/optimizeMesh.cpp b/modeling/libraries/pml/tools/optimizeMesh/optimizeMesh.cpp
deleted file mode 100644
index dc3bb1a..0000000
--- a/modeling/libraries/pml/tools/optimizeMesh/optimizeMesh.cpp
+++ /dev/null
@@ -1,381 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <math.h>
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-
-/// global variables
-// -------------------- the physical model being processed ------------------------
-PhysicalModel * pm;
-
-// -------------------- all cluster ------------------------
-class Cluster;
-vector <Cluster *> allClusters;
-
-// first atom is now replaced by 2nd atom
-map<Atom *, Atom *> replacement;
-
-double precision;
-unsigned int nrOfNewAtoms;
-
-/** class Cluster
- *
- * a cluster is a set of point that are nearly at the same place (at a given precision)
- */
-class Cluster {
-public:
- /// create a cluster of this atom, using the given precision
- Cluster(double distance);
-
- ~Cluster();
-
- /// get composing atom by index
- Atom * getAtom(unsigned int id);
-
- /// add an atom to the cluster if in the given precision (true if added) (update center)
- bool addAtom(Atom *);
-
- /// get the center (create if necessary)
- Atom * getCenter();
-
- /// get nr of atoms in the cluster
- unsigned int nrOfAtoms();
-
- /// current atom index for new atoms
- static unsigned int atomIndex;
-
-private:
- /// cluster center
- Atom *center;
-
- /// the cluster cell
- Cell *myCell;
-
- /// distance precision
- double distance;
-
- /// update center position
- void updateCenter();
-};
-
-unsigned int Cluster::atomIndex = 10000;
-
-
-// -------------------- constructor/destructor ------------------------
-Cluster::Cluster(double distance) {
- this->distance = distance;
- myCell = new Cell(pm, StructureProperties::POLY_VERTEX);
- center = new Atom(pm, Cluster::atomIndex++);
- Cluster::atomIndex++;
- nrOfNewAtoms++;
- //pm->addAtom(center);
-}
-
-Cluster::~Cluster() {
- delete myCell;
- delete center;
-}
-
-// -------------------- updateCenter ------------------------
-void Cluster::updateCenter() {
- double pos[3];
- double posC[3];
- unsigned int size = myCell->getNumberOfStructures();
-
- for (unsigned int j=0; j<3; j++)
- posC[j] = 0.0;
-
- for (unsigned int i=0; i<size; i++) {
- ((Atom *)myCell->getStructure(i))->getPosition(pos);
- for (unsigned int j=0; j<3; j++)
- posC[j] += pos[j];
- }
-
- for (unsigned int j=0; j<3; j++)
- posC[j] /= ((double)size);
-
- center->setPosition(posC);
-}
-
-// -------------------- getCenter ------------------------
-Atom * Cluster::getCenter() {
- return center;
-}
-
-// -------------------- getAtom ------------------------
-Atom * Cluster::getAtom(unsigned int id) {
- return ((Atom*)myCell->getStructure(id));
-}
-
-// -------------------- nrOfAtoms ------------------------
-unsigned int Cluster::nrOfAtoms() {
- return myCell->getNumberOfStructures();
-}
-
-// -------------------- addAtom ------------------------
-bool Cluster::addAtom(Atom *a) {
- double posC[3];
- center->getPosition(posC);
- double pos[3];
- a->getPosition(pos);
- double dist = 0.0;
- for (unsigned int i=0; i<3; i++)
- dist += (posC[i]-pos[i])*(posC[i]-pos[i]);
- dist = sqrt(dist);
-
- if (nrOfAtoms()==0 || dist<distance) {
- myCell->addStructure(a);
- updateCenter();
- return true;
- } else {
- return false;
- }
-}
-
-
-// -------------------- insert ------------------------
-Cluster * insert(Atom *a) {
- vector <Cluster *>::iterator it;
-
- // look into allClusters for equivalence
- it = allClusters.begin();
- while (it!=allClusters.end() && !(*it)->addAtom(a))
- it++;
-
- // not found => insert
- if (it==allClusters.end()) {
- // no cluster found: create a new one
- Cluster *c = new Cluster(precision);
- c->addAtom(a);
- allClusters.push_back(c);
- return c;
- } else {
- return (*it);
- }
-
-}
-
-// -------------------- update ------------------------
-void update(MultiComponent *mc) {
- if (mc==NULL) {
- cout << "0 cells)" << endl;
- return;
- }
-
- cout << mc->getNumberOfCells() << " cells)" << endl;
- unsigned int degeneratedCount=0;
-
- // WARNING non-rentrant loop
- for (unsigned int i=0; i<mc->getNumberOfCells(); i++) {
- Cell *c = mc->getCell(i);
- StructuralComponent *sc = c->getAtoms();
- c->deleteAllStructures();
- cout << '\r' << i << flush;
- // remove previous list
- for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
- c->removeStructure(sc->getStructure(j));
- }
- // check it was done properly
- if (c->getNumberOfStructures()>0) {
- cout << "Cell #" << c->getIndex() << " cannot delete all atoms (still has " <<c->getNumberOfStructures() << ")" << endl;
- }
- // add new atoms
- map<Atom *, Atom *>::iterator proxy;
- for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
- proxy = replacement.find((Atom *)sc->getStructure(j));
- if (proxy==replacement.end()) {
- // not found?!
- cout << "Cell #" << c->getIndex() << " cannot find replacement for Atom#" << sc->getStructure(i)->getIndex() << endl;
- } else {
- c->addStructureIfNotIn(proxy->second);
- }
- }
- // check that the cell did not degenerate
- StructureProperties::GeometricType t = c->getType();
- int normalSize = ((t == StructureProperties::LINE)?2:
- ((t == StructureProperties::TRIANGLE)?3:
- ((t == StructureProperties::QUAD)?4:
- ((t == StructureProperties::TETRAHEDRON)?4:
- ((t == StructureProperties::WEDGE)?6:
- ((t == StructureProperties::HEXAHEDRON)?8:-1))))));
- if (normalSize!=-1 && normalSize!=(int)c->getNumberOfStructures()) {
- cout << "deleting degenerated Cell #" << c->getIndex() << ": it is a " <<
- StructureProperties::toString(t) << " and should have " << normalSize <<
- " atoms, but has now " << c->getNumberOfStructures() << flush;
- degeneratedCount++;
- c->getStructuralComponent(0)->removeStructure(c);
- // a cell was deleted, as it is a non re-entrant loop, get back one index
- i--;
- }
- }
- cout << flush;
- cout << degeneratedCount << " degenerated cells removed " << endl;
-}
-
-// -------------------- saveClusters ------------------------
-void saveClusters(string clusterFile) {
- stringstream clusterOSS;
- clusterOSS << precision;
-
-
- string nonClusterFile = clusterFile;
- unsigned int pLast = clusterFile.rfind(".");
-
- if (pLast != string::npos) {
- clusterFile.erase(pLast);
- clusterFile += "-clusters-" + clusterOSS.str() + ".txt";
- } else
- clusterFile="clusters-" + clusterOSS.str() + ".txt";
-
- pLast = nonClusterFile.rfind(".");
- if (pLast != string::npos) {
- nonClusterFile.erase(pLast);
- nonClusterFile += "-non-clusters-" + clusterOSS.str() + ".txt";
- } else
- nonClusterFile = "non-clusters-" + clusterOSS.str() + ".txt";
-
- cout << "-> please wait while saving cluster informations in " << clusterFile << " (" << pm->getNumberOfAtoms() - allClusters.size() << " clusters) and non-clusters in " << nonClusterFile << endl;
- ofstream clusterOutputFile(clusterFile.c_str());
- ofstream nonClusterOutputFile(nonClusterFile.c_str());
- for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
- if ((*it)->nrOfAtoms()>1) {
- clusterOutputFile << (*it)->getCenter()->getIndex() << " : ";
- for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++)
- clusterOutputFile << (*it)->getAtom(i)->getIndex() << " ";
- clusterOutputFile << endl;
- } else {
- nonClusterOutputFile << (*it)->getAtom(0)->getIndex() << endl;
- }
- }
- clusterOutputFile.close();
- nonClusterOutputFile.close();
-}
-
-// -------------------- optimize ------------------------
-void optimize(string clusterFile) {
- StructuralComponent *atoms = pm->getAtoms();
-
- // create clusters
- for (unsigned int i=0; i<atoms->getNumberOfStructures(); i++) {
- insert((Atom *) atoms->getStructure(i));
- cout << '\r' << i << flush;
- }
- cout << endl;
-
- cout << "found " << allClusters.size() << " clusters, for " << atoms->getNumberOfStructures() << " atoms" << endl;
- cout << "-> please wait while removing " << atoms->getNumberOfStructures() - allClusters.size() << " atoms" << endl;
-
- // create newAtoms with all atoms that are alone in their clusters and
- // all cluster centers
- StructuralComponent * newAtoms = new StructuralComponent(pm);
- for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
- if ((*it)->nrOfAtoms()==1) {
- newAtoms->addStructure((*it)->getAtom(0));
- replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(0), (*it)->getAtom(0)));
- } else {
- newAtoms->addStructure((*it)->getCenter());
- // memorize replacements
- for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++) {
- replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(i), (*it)->getCenter()));
- }
- }
- }
-
- // save the clusters and non cluster
- saveClusters(clusterFile);
-
- // update all atoms using replacements
- cout << "-> please wait while replacing atoms in exclusive components (";
- update(pm->getExclusiveComponents());
- cout << "-> please wait while replacing atoms in informative components (";
- update(pm->getInformativeComponents());
-
- // Use new atoms instead of atoms
- cout << "-> please wait while changing atoms" << endl;
- pm->setAtoms(newAtoms, false); // do not delete old atom list!
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=3) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml precision" << endl;
- cout << "output to: file-optimized-precision.pml" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- precision = atof(argv[2]);
- // read the pml
- string filename(argv[1]);
- cout << "-> please wait while opening " << filename << " for optimizing precision " << precision << endl;
- pm = new PhysicalModel(filename.c_str());
-
- cout << "-> please wait while optimizing " << pm->getNumberOfAtoms() << " atoms..." << endl;
-
- optimize(filename);
- /*
- // now, we have the right component, let's do some work...
- nrOfNewAtoms = 0;
- StructuralComponent * refined = refine(sc);
-
- // add the new SC to the exclusive component
- if (refined)
- pm->getExclusiveComponents()->addSubComponent(refined);
- */
-
- // save the result
- stringstream clusterOSS;
- clusterOSS << precision;
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-optimized-" + clusterOSS.str() + ".pml";
- } else
- filename="optimized-" + clusterOSS.str() + ".pml";
-
- cout << "-> please wait while saving " << filename << " (" << nrOfNewAtoms << " new atoms)" << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" optimized for "+clusterOSS.str());
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
- outputFile.close();
-
- delete pm;
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/pml2ansys/pml2ansys.cpp b/modeling/libraries/pml/tools/pml2ansys/pml2ansys.cpp
deleted file mode 100644
index 932325b..0000000
--- a/modeling/libraries/pml/tools/pml2ansys/pml2ansys.cpp
+++ /dev/null
@@ -1,212 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-
-// the input .obj file
-PhysicalModel *pm;
-string pmlFile;
-string outputBase;
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for(unsigned int i=0; i<sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for(int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if(equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if(find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for(iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-f", "none" },
- { "-o", "pml2ansys-output" },
-};
-
-const char* usage = "usage:\n"
- "pml2ansys -f=document.pml [-o=output]\n"
- "Transform a PML document containing an 'Elements' exclusive structural component to a .node and .elem (readable in ANSYS)\n"
- "(Note no space around '=')\n"
- "Where the flags can be any of: \n"
- "f (input pml document), o (output base file name) \n";
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// -------------------- processArg ------------------------
-void processArg() {
- pmlFile = argVal["-f"];
- outputBase = argVal["-o"];
- if (pmlFile=="none") {
- cerr << "Argument error: -f is mandatory" << usage << endl;
- exit(-1);
- }
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "pml2ansys generating " << outputBase << ".elem and " << outputBase << ".node from " << pmlFile << endl;
- cout << endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
-
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
- //argVal.print();
-
- processArg();
- printArg();
-
- try {
- pm = new PhysicalModel(pmlFile.c_str());
-
- //-- create the .node
- // open the node file for writing
- string nodeFile = outputBase + ".node";
- string nodeFileTxt = outputBase + "-node.txt";
- std::ofstream nodeStream;
- nodeStream.open(nodeFile.c_str());
- if (!nodeStream.is_open()) {
- cerr << "Error: cannot open file " << nodeFile << endl;
- exit(1);
- }
- std::ofstream nodeStreamTxt;
- nodeStreamTxt.open(nodeFileTxt.c_str());
- if (!nodeStreamTxt.is_open()) {
- cerr << "Error: cannot open file " << nodeFileTxt << endl;
- exit(1);
- }
-
- StructuralComponent *sc = pm->getAtoms();
- Atom *a;
- double pos[3];
- nodeStream.setf(ios::fixed, ios::floatfield); // set fixed floating format
- nodeStream.precision(12);
- nodeStreamTxt.setf(ios::fixed, ios::floatfield); // set fixed floating format
- nodeStreamTxt.precision(12);
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- a = (Atom *) sc->getStructure(i);
- a->getPosition(pos);
- nodeStream << a->getIndex()+1 << " " << pos[0] << " " << pos[1] << " " << pos[2] << endl; //<< " 0 0 0" << endl;
- nodeStreamTxt << "n," << a->getIndex()+1 << "," << pos[0] << "," << pos[1] << "," << pos[2] << endl; //<< " 0 0 0" << endl;
- }
-
- nodeStream.close();
- nodeStreamTxt.close();
-
- //-- create the .elem
- // find the structural component "Elements" in the exclusive components
- Component * cpt = pm->getComponentByName("Elements");
- if (!cpt) {
- cout << "Cannot find any component named \"Elements\". Exiting" << endl;
- exit(-1);
- }
-
- // check if it is a correct one
- if (!cpt->isExclusive() || !cpt->isInstanceOf("StructuralComponent")) {
- cout << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
- exit(-2);
- }
-
- // check if c is made of hexahedron
- sc = (StructuralComponent *) cpt;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON)) {
- cout << "Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON. Exiting" << endl;
- exit(-3);
- }
-
- // open the elem file for writing
- string elemFile = outputBase + ".elem";
- std::ofstream elemStream;
- elemStream.open(elemFile.c_str());
- if (!elemStream.is_open()) {
- cerr << "Error: cannot open file " << elemFile << endl;
- exit(1);
- }
-
- // now, we have the right component, let's do some work...
- Cell *c;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- c = (Cell *) sc->getCell(i);
- if (c->getType()==StructureProperties::HEXAHEDRON) {
- elemStream << c->getStructure(0)->getIndex()+1 << " "
- << c->getStructure(1)->getIndex()+1 << " "
- << c->getStructure(2)->getIndex()+1 << " "
- << c->getStructure(3)->getIndex()+1 << " "
- << c->getStructure(4)->getIndex()+1 << " "
- << c->getStructure(5)->getIndex()+1 << " "
- << c->getStructure(6)->getIndex()+1 << " "
- << c->getStructure(7)->getIndex()+1 << " "
- " 1 1 0 0 0 0" << endl;
- }
- }
-
- elemStream.close();
-
- } catch(PMLAbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/pml2csv/pml2csv.cpp b/modeling/libraries/pml/tools/pml2csv/pml2csv.cpp
deleted file mode 100644
index e1c265d..0000000
--- a/modeling/libraries/pml/tools/pml2csv/pml2csv.cpp
+++ /dev/null
@@ -1,231 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-// -------------------- isIn ------------------------
-bool isIn(StructuralComponent *sc, Atom *a) {
- unsigned int i=0;
- bool found=false;
- while (i<sc->getNumberOfStructures() && !found) {
- found = (sc->getStructure(i)==a);
- i++;
- }
- return found;
-}
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for(unsigned int i=0; i<sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for(int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if(equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if(find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for(iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-f", "" },
- { "-select", "" },
- { "-o", ""},
- { "-d", "comma"},
-};
-
-const char* usage = "usage:\n"
- "pml2csv -f=file.pml [-select=name] [-o=output.csv] [-d=space]\n"
- "(Note no space around '=')\n"
- "Where the flags can be any of: \n"
- "-f the input pml document\n"
- "-select the name of the structural component or cell to export as csv\n"
- " (default = all atoms)\n"
- "-o name of the csv output file (default=file.csv)\n"
- "-d demiter can be either 'space' or 'comma' (default is 'comma')\n";
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// arguments
-string filename;
-string selected;
-string output;
-char separator;
-
-// -------------------- processArg ------------------------
-void processArg() {
- filename = argVal["-f"];
- output = argVal["-o"];
- selected = argVal["-select"];
-
- if (filename=="") {
- cerr << "Argument error: -f argument is mandatory" << endl << usage << endl;
- exit(-1);
- }
-
- if (output=="") {
- // generate csv output filename
- output=filename;
- unsigned int pLast = output.rfind(".");
- if (pLast != string::npos) {
- output.erase(pLast);
- output += ".csv";
- } else
- output="pml2csv-output.csv";
- }
-
- if (argVal["-d"]=="space") {
- separator=' ';
- } else {
- separator=',';
- }
-
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "pml2csv is converting ";
- if (selected!="") {
- cout << "component/cell " << selected;
- } else {
- cout << "all atoms";
- }
- cout << " of " << filename << " to CSV file " << output << " (delimiter is " << separator << ")"<< endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
- //argVal.print();
-
- processArg();
- printArg();
-
- try {
- // read the pml
- cout << "-> please wait while reading " << filename;
- PhysicalModel * pm = new PhysicalModel(filename.c_str());
-
- // get the component
- Component *cpt = NULL;
- Cell *cellCpt = NULL;
- StructuralComponent *atoms = NULL;
-
- cout << "-> get ";
- if (selected=="") {
- cout << "all atoms" << endl;
- atoms = pm->getAtoms();
- } else {
- cout << selected << endl;
- cpt = pm->getComponentByName(selected);
- if (!cpt) {
- // try harder: look for a cell
- Structure *s = pm->getStructureByName(selected);
- if (s && s->isInstanceOf("Cell")) {
- cellCpt = (Cell*) s;
- } else
- throw PMLAbortException("No components/cells named " + selected);
- }
- }
-
- // now extract all atoms
- StructuralComponent *selectedAtoms = new StructuralComponent(NULL, "selected atoms");
- if (atoms) {
- for (unsigned int j=0; j<atoms->getNumberOfStructures(); j++)
- selectedAtoms->addStructureIfNotIn(atoms->getStructure(j));
- } else if (cpt) {
- if (cpt->isInstanceOf("StructuralComponent") && ((StructuralComponent *)cpt)->composedBy()==StructuralComponent::CELLS) {
- for (unsigned int i=0; i<cpt->getNumberOfCells(); i++) {
- Cell *c=cpt->getCell(i);
- for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
- selectedAtoms->addStructureIfNotIn(c->getStructure(j));
- }
- } else {
- StructuralComponent *sc=(StructuralComponent *)cpt;
- for (unsigned int j=0; j<sc->getNumberOfStructures(); j++)
- selectedAtoms->addStructureIfNotIn(sc->getStructure(j));
- }
- } else {
- for (unsigned int j=0; j<cellCpt->getNumberOfStructures(); j++)
- selectedAtoms->addStructureIfNotIn(cellCpt->getStructure(j));
- }
- cout << "-> found " << selectedAtoms->getNumberOfStructures() << " atoms to export as CSV" << endl;
-
- // save the result
- cout << "-> please wait while saving " << output << " " << endl;
- ofstream outputFile(output.c_str());
- outputFile << "Atom#" << separator << "x" << separator << "y" << separator << "z" << endl;
- double pos[3];
- for (unsigned int i=0; i<selectedAtoms->getNumberOfStructures(); i++) {
- Atom *a = (Atom *)selectedAtoms->getStructure(i);
- a->getPosition(pos);
- outputFile << a->getIndex() << separator << pos[0] << separator << pos[1] << separator << pos[2] << endl;
- }
- outputFile.close();
-
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/pml2ghs3d/pml2ghs3d.cpp b/modeling/libraries/pml/tools/pml2ghs3d/pml2ghs3d.cpp
deleted file mode 100644
index 2eb3795..0000000
--- a/modeling/libraries/pml/tools/pml2ghs3d/pml2ghs3d.cpp
+++ /dev/null
@@ -1,217 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-
-// the input .obj file
-PhysicalModel *pm;
-string pmlFile;
-string meshFile;
-bool reorder;
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for(unsigned int i=0; i<sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for(int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if(equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if(find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for(iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-f", "none" },
- { "-o", "pml2ghs3d-output.mesh" },
- { "-reorder", "false"},
-};
-
-const char* usage = "usage:\n"
- "pml2ghs3d -f=document.pml [-o=output] [-reorder=false]\n"
- "Transform a PML document containing an 'Elements' (list of triangles) exclusive structural component to a .mesh (readable in GHS3D), and reorder the index if reorder is true (needed if atom id are not successive number)\n"
- "(Note no space around '=')\n"
- "Where the flags can be any of: \n"
- "f (input pml document), o (output .mesh file name), reorder (true or false, default is false) \n";
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// -------------------- processArg ------------------------
-void processArg() {
- pmlFile = argVal["-f"];
- meshFile = argVal["-o"];
- reorder = (argVal["-reorder"]=="false")?false:true;
- if (pmlFile=="none") {
- cerr << "Argument error: -f is mandatory" << usage << endl;
- exit(-1);
- }
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "pml2ghs3d generating " << meshFile << " from " << pmlFile << ", with" << (reorder?"":"out") << " reordering" << endl;
- cout << endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
-
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
- //argVal.print();
-
- processArg();
- printArg();
-
- try {
- pm = new PhysicalModel(pmlFile.c_str());
-
- //-- create the .mesh
- std::ofstream meshStream;
- meshStream.open(meshFile.c_str());
- if (!meshStream.is_open()) {
- cerr << "Error: cannot open file " << meshFile << endl;
- exit(1);
- }
-
- // write the vertices
- meshStream << " MeshVersionFormatted" << endl;
- meshStream << " Dimension" << endl;
- meshStream << " 3" << endl;
- meshStream << " Vertices" << endl;
- meshStream << " " << pm->getNumberOfAtoms() << endl;
-
- StructuralComponent *sc = pm->getAtoms();
-
- Atom *a;
- double pos[3];
- meshStream.setf(ios::fixed, ios::floatfield); // set fixed floating format
- meshStream.precision(6);
- map<unsigned int,unsigned int> atomIdToNodeId;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- a = (Atom *) sc->getStructure(i);
- a->getPosition(pos);
- meshStream << "\t\t" << pos[0] << " " << pos[1] << " \t\t\t " << pos[2] << " 0\t\t\t\t\t\t" << endl;
- atomIdToNodeId.insert(pair<unsigned int,unsigned int>(a->getIndex(),i+1));
- }
-
- meshStream << endl;
- meshStream << " Triangles" << endl;
-
- //-- convert the triangles
- Component * cpt = pm->getComponentByName("Elements");
- if (!cpt) {
- cerr << "Cannot find any component named \"Elements\". Exiting" << endl;
- exit(-1);
- }
-
- // check if it is a correct one
- if (!cpt->isExclusive() || !cpt->isInstanceOf("StructuralComponent")) {
- cerr << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
- exit(-2);
- }
-
- // check if c is made of hexahedron
- sc = (StructuralComponent *) cpt;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::TRIANGLE)) {
- cerr << "Cannot translate the \"Elements\" component: does not contains any cell geometric type TRIANGLE. Exiting" << endl;
- exit(-3);
- }
-
- // now, we have the right component, let's do some work...
- meshStream << " " << sc->getNumberOfStructures() << endl;
-
- Cell *c;
- map<unsigned int,unsigned int>::iterator result;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- c = (Cell *) sc->getCell(i);
- if (c->getType()==StructureProperties::TRIANGLE) {
- if (!reorder) {
- meshStream << c->getStructure(0)->getIndex()+1 << " "
- << c->getStructure(1)->getIndex()+1 << " "
- << c->getStructure(2)->getIndex()+1
- << " 1" << endl;
- } else {
- for (unsigned int j=0; j<3; j++) {
- result=atomIdToNodeId.find(c->getStructure(j)->getIndex());
- if (result==atomIdToNodeId.end()) {
- cerr << "Cell #" << c->getIndex() << ": cannot find atom#" << c->getStructure(j)->getIndex() << " in the map. Exiting." << endl;
- exit(-4);
- } else {
- meshStream << result->second << " ";
- }
- }
- meshStream << " 1" << endl;
- }
- }
- }
- meshStream << endl;
- meshStream << " End" << endl;
- meshStream << endl;
-
- meshStream.close();
-
- } catch(PMLAbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/pml2wrl/pml2wrl.cpp b/modeling/libraries/pml/tools/pml2wrl/pml2wrl.cpp
deleted file mode 100644
index f6f1206..0000000
--- a/modeling/libraries/pml/tools/pml2wrl/pml2wrl.cpp
+++ /dev/null
@@ -1,328 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-#include <string.h> // strcmp
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <MultiComponent.h>
-//#include <map>
-
-// variables
-string pmlFile;
-string wrlFile;
-string pgmName;
-std::ofstream outputFile;
-PhysicalModel *pm;
-Cell *c;
-bool vrml2;
-vector<string> componentNames;
-
-/** the elements classified by a rank,
-* in an increasing way
-*/
-map <unsigned int, unsigned int> rankA;
-map <unsigned int, unsigned int>::iterator it;
-unsigned int rank;
-
-//----------------------- processParam --------------------
-void processParam(int argc, char **argv) {
-
- // get the name of the program
- pgmName = argv[0];
-
- pmlFile = "none";
- wrlFile = "";
- vrml2 = false;
-
- if (argc<6) {
- cout << "Wrong number of argument (at least 4 needed):" << endl;
- cout << "pml2wrl -f document.pml -o document.wrl [-use SCName]* [-vrml2]" << endl;
- cout << "If no SC name are given, then 'Regions' is used by default." << endl;
- cout << "Default output is vrml v1.0 ASCII" << endl;
- exit(-1);
- }
-
- for (int i=1; i<argc; i++) {
- if (strcmp(argv[i],"-f")==0) { // get the input pml file name
- i++;
- pmlFile = argv[i];
- if (pmlFile=="none") {
- cout << "Argument error: -f is mandatory" << endl;
- exit(-1);
- }
- }
-
- if (strcmp(argv[i],"-o")==0) { // output pdo
- i++;
- wrlFile = argv[i];
- wrlFile += ".wrl";
- // open the wrl file for writing
- outputFile.open(wrlFile.c_str());
- if (!outputFile.is_open()) {
- cout << "Argument error: cannot open file " << wrlFile << endl;
- exit(1);
- }
- // set fixed floating format
- outputFile.setf(ios::fixed, ios::floatfield);
- outputFile.precision(6);
- }
-
- if (strcmp(argv[i],"-use")==0) {
- i++;
- componentNames.push_back(argv[i]);
- }
-
- if (strcmp(argv[i],"-vrml2")==0) {
- vrml2=true;
- }
-
- }
-
- if (componentNames.size()==0)
- componentNames.push_back("Regions");
-
-}
-
-//----------------------- printParam ---------------------
-void printParam() {
- cout << pgmName << " generating " << wrlFile << " from " << pmlFile;
- cout << " using components ";
- for (unsigned int i=0; i<componentNames.size(); i++)
- cout << componentNames[i] << "," ;
- cout << endl;
-}
-
-//----------------------- printMaterial -----------------
-void printMaterial(Cell*c) {
-
- double *color;
-
- // get the color of the region
- color = ((StructuralComponent*)c)->getColor();
- outputFile << "\t" << "Material {" << endl;
-
- outputFile << "\t" << "\t" << "diffuseColor "<< color[0] << " " << color[1] << " " << color[2] << endl;
- outputFile << "\t" << "\t" << "ambientIntensity 0" << endl;
- outputFile << "\t" << "\t" << "specularColor 0.0 0.0 0.0" << endl;
- outputFile << "\t" << "\t" << "shininess 0.0 " << endl;
- outputFile << "\t" << "\t" << "transparency 0.0 " << endl;
- outputFile << "\t" << "}" << endl;
- outputFile << endl;
-
-}
-
-//----------------------- printCoordinates -----------------
-void printCoordinates(Cell *c) {
-
- Atom *a;
- double pos[3];
- unsigned int index;
-
- for (unsigned int i=0; i<c->getNumberOfStructures(); i++) {
- a = (Atom*)c->getStructure(i);
- // the points are indexed from 0 !!
- index = a->getIndex();
- bool isInserted = rankA.insert(pair<unsigned int, unsigned int>(index, rank)).second;
- if (isInserted) {
- rank++;
- a->getPosition(pos);
- outputFile << "\t" << "\t" << "\t" << "\t" << pos[0] << " " << pos[1] << " " << pos[2] << "," << endl;
- }
- }
-
- // Warning:the axes are differents with Blender
-// outputFile << "\t" << "\t" << "\t" << "\t" << pos[0] << " " << pos[2] << " " << pos[1] << "," << endl;
-
-}
-
-
-
-//------------------------ printSurfaces -------------------
-void printSurfaces(Cell *c) {
-
- outputFile << "\t\t\t\t";
- for (int k=c->getNumberOfStructures()-1; k>=0; k--) {
- // look for the index of the elements and
- // take the corresponding rank
- it = rankA.find(c->getStructure(k)->getIndex());
- if (it==rankA.end()) {
- cout << "ERROR c#" << c->getIndex() << ": cannot find Atom#" << c->getStructure(0)->getIndex() << endl;
- } else {
- outputFile << it->second << ", ";
- }
- }
- outputFile << " -1," << endl;
-
-}
-
-// ------------------------ Prologue for VRML2 ---------------------------
-void vrml2Prologue() {
- outputFile << "# pml2wrl" << endl;
- outputFile << " Background {\n"
- " skyColor [1.000000 1.000000 1.000000, ]\n"
- " }\n"
- " Viewpoint {\n"
- " fieldOfView 0.523599\n"
- " position 222.803372 287.424506 199.848172\n"
- " description \"Default View\"\n"
- " orientation 0.590285 -0.769274 -0.244504 0.987861\n"
- " }\n"
- " NavigationInfo {\n"
- " type [\"EXAMINE\",\"FLY\"]\n"
- " speed 4.000000\n"
- " headlight FALSE"
- " }\n"
- "\n"
- " DirectionalLight { ambientIntensity 1 intensity 0 # ambient light\n"
- " color 1.000000 1.000000 1.000000 }\n"
- "\n"
- " DirectionalLight {\n"
- " direction -0.577350 -0.577350 -0.577350\n"
- " color 1.000000 1.000000 1.000000\n"
- " intensity 1.000000\n"
- " on TRUE\n"
- " }\n"
- " Transform {\n"
- " translation 0 0 0\n"
- " rotation 0 0 1 0\n"
- " scale 1 1 1\n"
- " children [\n"
- " Shape {\n"
- " appearance Appearance {\n"
- " material Material {\n"
- " ambientIntensity 0\n"
- " diffuseColor 0.8 0.2 0.2\n"
- " specularColor 0 0 0\n"
- " shininess 0.0078125\n"
- " transparency 0\n"
- " }\n"
- " }\n"
- " geometry IndexedFaceSet {\n"
- " solid FALSE\n";
- outputFile << " coord DEF pml2wrl Coordinate {" << endl;
-
-
-}
-
-void vrml1Prologue(StructuralComponent *sc) {
- outputFile << "DEF pml2wrl Separator {\n";
- printMaterial((Cell*)sc->getCell(0));
- outputFile << "\tMaterialBinding { value OVERALL }\n"
- "\tShapeHints { shapeType SOLID vertexOrdering CLOCKWISE }\n"
- "\tSeparator {\n"
- "\tCoordinate3 {\n";
-}
-
-//------------------------ main ---------------------------
-int main(int argc, char **argv) {
-
- StructuralComponent *sc;
-
- processParam(argc, argv);
- printParam();
-
- // line mandatory
- if (vrml2) {
- outputFile << "#VRML V2.0 utf8" << endl;//"#VRML V1.0 ascii" << endl;
- outputFile << "#WARNING: pml2wrl may have inverted backface culling..." << endl;
- } else
- outputFile << "#VRML V1.0 ascii" << endl;
-
- try {
- cout << "-> Please wait while reading pml" << endl;
- pm = new PhysicalModel(pmlFile.c_str());
-
- cout << "-> Please wait while converting to wrl" << endl;
-
- for (unsigned int cptId=0; cptId<componentNames.size(); cptId++) {
- // find the multiComponent component
- Component *cpt = pm->getComponentByName(componentNames[cptId]);
- if (!cpt) {
- cout << "Cannot find any component named \"" << componentNames[cptId] << "\". Skipping" << endl;
- } else {
- // check if it is a correct one
- if (!cpt->isInstanceOf("StructuralComponent")) {
- cout << "Cannot translate the \"" << componentNames[cptId] << "\" component: not a structural component. Skipping" << endl;
- } else {
- sc = (StructuralComponent*)cpt;
-
- // prologue
- if (vrml2)
- vrml2Prologue();
- else
- vrml1Prologue(sc);
-
- // nodes
- outputFile << "\tpoint [\n";
-
- // build rankA
- rank=0;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- c = (Cell*)sc->getCell(i);
- printCoordinates(c);
- }
- outputFile << "\t\t\t]" << endl;
- outputFile << "\t\t}" << endl;
-
- if (!vrml2) {
- outputFile << "\tIndexedFaceSet {" << endl;
- }
-
- // print facets
- outputFile << "\tcoordIndex [" << endl;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- c = (Cell*)sc->getCell(i);
- printSurfaces(c);
- }
-
- outputFile <<"\t\t\t]" << endl;
- outputFile <<"\t\t}" << endl;
- outputFile <<"\t}" << endl;
-
- // end
- if (vrml2) {
- outputFile <<" ]" << endl;
- outputFile <<" }" << endl;
- } else {
- outputFile << "}" << endl;
- }
- outputFile << endl;
- }
- }
- }
-
- outputFile.close();
-
- } catch(PMLAbortException ae) {
- cout << "AbortException : Physical model aborted:" << endl;
- cout << ae.what() << endl;
- }
-
-
-}
diff --git a/modeling/libraries/pml/tools/pmldiff/pmldiff.cpp b/modeling/libraries/pml/tools/pmldiff/pmldiff.cpp
deleted file mode 100644
index 7e95298..0000000
--- a/modeling/libraries/pml/tools/pmldiff/pmldiff.cpp
+++ /dev/null
@@ -1,190 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <math.h>
-
-#include <PhysicalModel.h>
-#include <StructuralComponent.h>
-#include <Loads.h>
-#include <Translation.h>
-
-string srcFile;
-string destFile;
-string output;
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for(unsigned int i=0; i<sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for(int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if(equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if(find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for(iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-src", "none" },
- { "-dest", "none" },
- { "-o", "pmldiff-output.lml" },
-};
-
-const char* usage = "usage:\n"
- "pmldiff -src=f1.pml -dest=f2.pml [-o=diff.lml]\n"
- "Create a LML document which contains the translations needed to transform f1.pml to f2.pml\n"
- "(Note no space around '=')\n"
- "Where mandatory flags are: \n"
- "src (source pml document), dest (destination pml document)\n"
- "The optional o flag allows one to specify the resulting LML file name\n";
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// -------------------- processArg ------------------------
-void processArg() {
- srcFile = argVal["-src"];
- destFile = argVal["-dest"];
- output = argVal["-o"];
- if (srcFile=="none" || destFile == "none") {
- cerr << "Argument error: -src and -dest flags are mandatory" << usage << endl;
- exit(-1);
- }
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "pml2diff generating " << output << ", tranformation of " << srcFile << " to " << destFile << endl;
- cout << endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
-
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
-
- processArg();
- printArg();
-
- try {
- PhysicalModel *src = new PhysicalModel(srcFile.c_str());
- PhysicalModel *dest = new PhysicalModel(destFile.c_str());
-
- //-- create the loads
- Loads *transform = new Loads();
-
- //-- compute the differences
- StructuralComponent *srcA = src->getAtoms();
- Atom *a1, *a2;
- double srcPos[3];
- double destPos[3];
- double translation[3];
- double value;
-
- for (unsigned int i=0; i<srcA->getNumberOfStructures(); i++) {
- // get the src position
- a1 = (Atom *) srcA->getStructure(i);
- a1->getPosition(srcPos);
- // get the dest position
- if ((a2 = dest->getAtom(a1->getIndex())) == NULL) {
- cerr << "Error cannot find atom #" << a1->getIndex() << " in " << destFile << endl;
- exit(1);
- }
- a2->getPosition(destPos);
- // compute the translation
- Translation *t = new Translation();
- value = 0.0;
- for (unsigned int j=0; j<3; j++) {
- translation[j] = destPos[j] - srcPos[j];
- value += translation[j]*translation[j];
- }
- value = sqrt(value);
- // if atoms are not at the same place
- if (value > 1e-12) {
- // normalize translation
- for (unsigned int j=0; j<3; j++)
- translation[j] /= value;
-
- t->setDirection(translation[0], translation[1], translation[2]);
- t->addTarget(a1->getIndex());
- t->addValueEvent(0.0, 0.0);
- t->addValueEvent(value, 1.0);
-
- transform->addLoad(t);
- }
- }
-
- // write the transformation in a file
- std::ofstream loadStream;
- loadStream.open(output.c_str());
- if (!loadStream.is_open()) {
- cerr << "Error: cannot open file " << output << endl;
- exit(1);
- }
- transform->xmlPrint(loadStream);
- loadStream << "<!-- this file (" << output << ") was generated by pml2diff and is the tranformation from " << srcFile << " to " << destFile << " -->" << endl;
- loadStream.close();
-
-
- } catch(PMLAbortException ae) {
- cerr << "AbortException: Physical model aborted:" << endl ;
- cerr << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/refineMesh/refineMesh.cpp b/modeling/libraries/pml/tools/refineMesh/refineMesh.cpp
deleted file mode 100644
index 40b880f..0000000
--- a/modeling/libraries/pml/tools/refineMesh/refineMesh.cpp
+++ /dev/null
@@ -1,552 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-
-/// global variables
-// -------------------- the physical model being processed ------------------------
-PhysicalModel * pm;
-
-
-// -------------------- All facets ------------------------
-class Connection;
-vector <Connection *> allConnections;
-vector <Atom *> newAtoms;
-
-/** class facet
- *
- * a connection can either be a line, triangular or quadrangular
- *
- * 1) LINE (line between two atoms in an element)
- *
- * 0 ----+---- 1
- * n0
- *
- * 1 new atom can be created
- * - n0 (center)
- *
- *
- *
- * 2) TRIANGLE (viewed from outside, normal pointing toward user)
- *
- * 2
- * / \
- * / \
- * n2 + n0 + n3
- * / x \
- * / \
- * 0-----+-----1
- * n1
- * 4 new atoms can be created:
- * - n0 (center),
- * - n1 (between 0 and 1),
- * - n2 (between 0 and 2) and
- * - n3 (between 1 and 2)
- *
- *
- *
- * QUAD (viewed from outside, normal pointing toward user)
- * n4
- * 3-----+-----2
- * | |
- * | |
- * n2 + x + n3
- * | n0 |
- * | |
- * 0-----+-----1
- * n1
- * 5 new atoms can be created:
- * - n0 (center),
- * - n1 (between 0 and 1),
- * - n2 (between 0 and 3),
- * - n3 (between 1 and 2) and
- * - n4 (between 2 and 3)
- */
-class Connection {
-public:
- /// create a line connection using the given ptrs
- Connection(Atom *, Atom *);
-
- /// create a triangular connection using the given ptrs
- Connection(Atom *, Atom *, Atom *);
-
- /// create a quad connection using the given ptrs
- Connection(Atom *, Atom *, Atom *, Atom *);
-
- /// destructor
- virtual ~Connection();
-
- /// if it is the same (equivalent) facet, increment used (return true if equivalence)
- friend bool equivalent(Connection *, Connection *);
-
- /// print on stdout
- void debug();
-
- /// get the number of time it is being used
- unsigned int getUsed() const;
-
- /// get composing atom by index
- Atom * getAtom(unsigned int);
-
- /// get new atom in the center (create it if not already there
- Atom * getCenter();
-
- /// compute coordinates of the center of any kind of cell
- static void getCenter(Cell *c, double center[3]);
-
-
-private:
- /// is this atom index present in this connection (no check on the order)
- bool isIn(Atom *) const;
-
- /// initialization
- void init();
-
- /// the connection equivalent cell
- Cell *myCell;
-
- /// nr of times the connection is used
- unsigned int used;
-
- /// connection center
- Atom *n0;
-
- /// current atom index for new atoms
- static unsigned int atomIndex;
-
-};
-
-unsigned int Connection::atomIndex = 20000;
-
-// -------------------- getCenter ------------------------
-void Connection::getCenter(Cell *c, double center[3]) {
- double pos[3];
- unsigned int size = c->getNumberOfStructures();
-
- for (unsigned int j=0; j<3; j++)
- center[j] = 0.0;
-
- for (unsigned int i=0; i<size; i++) {
- ((Atom *)c->getStructure(i))->getPosition(pos);
- for (unsigned int j=0; j<3; j++)
- center[j] += pos[j];
- }
-
- for (unsigned int j=0; j<3; j++)
- center[j] /= ((double)size);
-}
-
-// -------------------- constructor/destructor ------------------------
-Connection::Connection(Atom *a, Atom *b) {
- myCell = new Cell(pm, StructureProperties::LINE);
- myCell->addStructureIfNotIn(a);
- myCell->addStructureIfNotIn(b);
- init();
-}
-Connection::Connection(Atom *a, Atom *b, Atom *c) {
- myCell = new Cell(pm, StructureProperties::TRIANGLE);
- myCell->addStructureIfNotIn(a);
- myCell->addStructureIfNotIn(b);
- myCell->addStructureIfNotIn(c);
- init();
-}
-
-Connection::Connection(Atom *a, Atom *b, Atom *c, Atom *d) {
- myCell = new Cell(pm, StructureProperties::QUAD);
- myCell->addStructureIfNotIn(a);
- myCell->addStructureIfNotIn(b);
- myCell->addStructureIfNotIn(c);
- myCell->addStructureIfNotIn(d);
- init();
-}
-
-Connection::~Connection() {
- delete myCell;
-}
-
-void Connection::init() {
- used = 1;
- // create center
- double pos[3];
- getCenter(myCell, pos);
- n0 = new Atom(pm, Connection::atomIndex, pos);
- Connection::atomIndex++;
-}
-
-// -------------------- debug ------------------------
-void Connection::debug() {
- switch (myCell->getNumberOfStructures()) {
- case 2:
- cout << "line <";
- break;
- case 3:
- cout << "triangle <";
- break;
- case 4:
- cout << "quad <";
- break;
- default:
- cout << "unknown connection <";
- break;
- }
- unsigned int i;
- for (i=0; i<myCell->getNumberOfStructures(); i++)
- cout << myCell->getStructure(i)->getIndex() << ",";
- cout << myCell->getStructure(i)->getIndex() << "> used " << used << " times" << endl;
-}
-
-// -------------------- getAtom ------------------------
-Atom * Connection::getAtom(unsigned int id) {
- return ((Atom*)myCell->getStructure(id));
-}
-
-// -------------------- equivalent ------------------------
-bool equivalent(Connection *f1, Connection *f2) {
- if (f1->myCell->getNumberOfStructures() != f2->myCell->getNumberOfStructures()) {
- return false;
- } else {
- unsigned int i=0;
- unsigned int equi=0;
- while (i<f1->myCell->getNumberOfStructures() && f2->isIn(f1->getAtom(i))) {
- i++;
- }
- if (i==f1->myCell->getNumberOfStructures()) {
- f1->used++;
- equi++;
- }
-
- return (i==f1->myCell->getNumberOfStructures());
- }
-}
-
-// -------------------- isIn ------------------------
-bool Connection::isIn(Atom *a) const {
- unsigned int i=0;
- while (i<myCell->getNumberOfStructures() && a!=myCell->getStructure(i))
- i++;
- return (i!=myCell->getNumberOfStructures());
-}
-
-
-// -------------------- getUsed ------------------------
-unsigned int Connection::getUsed() const {
- return used;
-}
-
-// -------------------- getCenter ------------------------
-Atom * Connection::getCenter() {
- return n0;
-}
-
-// -------------------- newTetra ------------------------
-Cell * newTetra(Atom *a, Atom *b, Atom *c, Atom *d) {
- Cell *cell = new Cell(pm, StructureProperties::TETRAHEDRON);
- cell->addStructureIfNotIn(a);
- cell->addStructureIfNotIn(b);
- cell->addStructureIfNotIn(c);
- cell->addStructureIfNotIn(d);
- return cell;
-}
-
-// -------------------- newHexa ------------------------
-Cell * newHexa(Atom *a, Atom *b, Atom *c, Atom *d, Atom *e, Atom *f, Atom *g, Atom *h) {
- Cell *cell = new Cell(pm, StructureProperties::HEXAHEDRON);
- cell->addStructureIfNotIn(a);
- cell->addStructureIfNotIn(b);
- cell->addStructureIfNotIn(c);
- cell->addStructureIfNotIn(d);
- cell->addStructureIfNotIn(e);
- cell->addStructureIfNotIn(f);
- cell->addStructureIfNotIn(g);
- cell->addStructureIfNotIn(h);
- return cell;
-}
-
-// -------------------- insert ------------------------
-// check if there is already an equivalent (existing) facet
-// if not insert it in the list
-// return the connection (if not inserted, return the equivalent connection already in the list)
-Connection * insert(Connection *f) {
- vector <Connection *>::iterator it;
-
- // look into allConnections for equivalence
- it = allConnections.begin();
- while (it!=allConnections.end() && !equivalent((*it),f))
- it++;
-
- // not found => insert
- if (it==allConnections.end()) {
- allConnections.push_back(f);
- Atom *a = f->getCenter();
- pm->addAtom(a);
- newAtoms.push_back(a);
- return f;
- } else {
- return (*it);
-
- }
-
-}
-
-// ------------- getNewCenteredAtom ------------------
-Atom * getNewCenteredAtom(Cell *c, unsigned int atomIndex) {
- double center[3];
- Atom *a;
-
- Connection::getCenter(c,center);
- a = new Atom(pm, atomIndex, center);
- pm->addAtom(a);
- newAtoms.push_back(a);
-
- return a;
-}
-
-// -------------------- refine ------------------------
-StructuralComponent * refine(StructuralComponent *sc) {
- StructuralComponent *r = new StructuralComponent(NULL, "Refined Elements");
-
- // create a new sc with refined elements:
- // for each element
- // create n sub-elements (n=8 for hexa, n=4 for tetra)
- // insert his sub-elements in the new SC
- unsigned int atomIndex = 10000;
- Atom *a;
- Cell *c;
- for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
- // c is an hexahedron or a tetrahedron
- c = sc->getCell(i);
-
- // Connections have to be described in anticlockwise (trigonometrywise) when
- // looking at them from outside the object
- switch(c->getType()) {
- case StructureProperties::TETRAHEDRON: {
- // tetrahedron are defined as follow:
- // 3
- // /| \ So to generate the connection list,
- // / | \ we just have to loop on all the
- // 1..|...\ 2 tetrahedron and add the corresponding 4 facets :
- // \ | / f0=0,1,2 f2=0,3,1
- // \ | / f1=0,2,3 f3=2,1,3
- // \|/
- // 0
- //insert(new Connection(c->getStructure(0), c->getStructure(1), c->getStructure(2)));
- //insert(new Connection(c->getStructure(0), c->getStructure(2), c->getStructure(3)));
- //insert(new Connection(c->getStructure(0), c->getStructure(3), c->getStructure(1)));
- //insert(new Connection(c->getStructure(2), c->getStructure(1), c->getStructure(3)));
- // subdividing facets in case of tetrahedron is not needed... (see part2 of this algo)
- //
- // So to generate a refined mesh, we just have to create one new atom in
- // the center and 4 new tetrahedrons
- //
- // 1. get a new atom in the center of the tetrahedron
- a = getNewCenteredAtom(c, atomIndex++);
- // 2. get proxy for atoms
- Atom *a0 = (Atom *) c->getStructure(0);
- Atom *a1 = (Atom *) c->getStructure(1);
- Atom *a2 = (Atom *) c->getStructure(2);
- Atom *a3 = (Atom *) c->getStructure(3);
- // 3. add the 4 new tetrahedrons
- r->addStructure(newTetra( a, a1, a2, a3));
- r->addStructure(newTetra(a0, a, a2, a3));
- r->addStructure(newTetra(a0, a1, a, a3));
- r->addStructure(newTetra(a0, a1, a2, a));
- break;
- }
-
- case StructureProperties::HEXAHEDRON: {
- // hexahedron are defined as follow:
- // 2-------------6
- // / \ . \ So to generate the connection list,
- // / \ / \ we just have to loop on all the
- // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
- // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
- // \ / \ / f1=0,4,7,3 f4=1,2,6,5
- // \ / . / f2=0,1,5,4 f5=4,5,6,7
- // 0-------------4
- //
- // So to generate a refined mesh, 19 new atoms have to be generated:
- // 6 center of each facet
- // + center of hexahedron
- // + 12 center of lines
- //
- // get the 8 atom proxys
- Atom *a0 = (Atom *) c->getStructure(0);
- Atom *a1 = (Atom *) c->getStructure(1);
- Atom *a2 = (Atom *) c->getStructure(2);
- Atom *a3 = (Atom *) c->getStructure(3);
- Atom *a4 = (Atom *) c->getStructure(4);
- Atom *a5 = (Atom *) c->getStructure(5);
- Atom *a6 = (Atom *) c->getStructure(6);
- Atom *a7 = (Atom *) c->getStructure(7);
- // 1. insert all 6 facets
- Connection *cf0 = insert(new Connection(a0, a3, a2, a1));
- Connection *cf1 = insert(new Connection(a0, a4, a7, a3));
- Connection *cf2 = insert(new Connection(a0, a1, a5, a4));
- Connection *cf3 = insert(new Connection(a3, a7, a6, a2));
- Connection *cf4 = insert(new Connection(a1, a2, a6, a5));
- Connection *cf5 = insert(new Connection(a4, a5, a6, a7));
- // 2. insert all 12 lines
- Connection *cl0 = insert(new Connection(a0, a1));
- Connection *cl1 = insert(new Connection(a1, a2));
- Connection *cl2 = insert(new Connection(a2, a3));
- Connection *cl3 = insert(new Connection(a3, a0));
- Connection *cl4 = insert(new Connection(a4, a5));
- Connection *cl5 = insert(new Connection(a5, a6));
- Connection *cl6 = insert(new Connection(a6, a7));
- Connection *cl7 = insert(new Connection(a7, a4));
- Connection *cl8 = insert(new Connection(a0, a4));
- Connection *cl9 = insert(new Connection(a1, a5));
- Connection *cl10 = insert(new Connection(a2, a6));
- Connection *cl11 = insert(new Connection(a3, a7));
- // get a new atom in the center of the tetrahedron
- a = getNewCenteredAtom(c, atomIndex++);
- // get all the centers
- Atom *f0 = cf0->getCenter();
- Atom *f1 = cf1->getCenter();
- Atom *f2 = cf2->getCenter();
- Atom *f3 = cf3->getCenter();
- Atom *f4 = cf4->getCenter();
- Atom *f5 = cf5->getCenter();
- Atom *l0 = cl0->getCenter();
- Atom *l1 = cl1->getCenter();
- Atom *l2 = cl2->getCenter();
- Atom *l3 = cl3->getCenter();
- Atom *l4 = cl4->getCenter();
- Atom *l5 = cl5->getCenter();
- Atom *l6 = cl6->getCenter();
- Atom *l7 = cl7->getCenter();
- Atom *l8 = cl8->getCenter();
- Atom *l9 = cl9->getCenter();
- Atom *l10 = cl10->getCenter();
- Atom *l11 = cl11->getCenter();
- // insert the 8 new hexahedrons
- r->addStructure(newHexa(f2, l9, f4, a, l4, a5, l5, f5));
- r->addStructure(newHexa(l8, f2, a, f1, a4, l4, f5, l7));
- r->addStructure(newHexa(l0, a1, l1, f0, f2, l9, f4, a));
- r->addStructure(newHexa(a0, l0, f0, l3, l8, f2, a, f1));
- r->addStructure(newHexa( a, f4,l10, f3, f5, l5, a6, l6));
- r->addStructure(newHexa(f1, a, f3,l11, l7, f5, l6, a7));
- r->addStructure(newHexa(f0, l1, a2, l2, a, f4,l10, f3));
- r->addStructure(newHexa(l3, f0, l2, a3, f1, a, f3, l11));
- break;
- }
-
- default:
- break;
- }
- }
-
- // return the SC
- return r;
-}
-
-
-// -------------------- newAtomSC ------------------------
-StructuralComponent * newAtomSC() {
- StructuralComponent *na = new StructuralComponent(NULL, "new atoms");
-
- for (unsigned int i=0; i<newAtoms.size(); i++) {
- na->addStructure(newAtoms[i]);
- }
-
- // return the SC
- return na;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=2) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml" << endl;
- cout << "subdivide structural component 'Elements' (each tetra is subdivided in 4 sub-tetra, each hexa is subdivided in 4 sub-hexa), output to: file-refined.pml" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- pm = new PhysicalModel(filename.c_str());
-
- // find the structural component "Elements" in the exclusive components
- Component * c = pm->getComponentByName("Elements");
- if (!c) {
- cout << "Cannot find any component named \"Elements\". Exiting" << endl;
- exit(-1);
- }
-
- // check if it is a correct one
- if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
- cout << "Cannot translate the \"Elements\" component: not exclusive or not a structural component. Exiting" << endl;
- exit(-2);
- }
-
- // check if c is made of hexahedron/tetrahedron
- StructuralComponent *sc = (StructuralComponent *) c;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
- sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON)) {
- cout << "Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON or TETRAHEDRON. Exiting" << endl;
- exit(-3);
- }
-
- // now, we have the right component, let's do some work...
- StructuralComponent * refined = refine(sc);
-
- // add the new SC to the informative component
- if (refined) {
- pm->getInformativeComponents()->addSubComponent(refined);
- // add another informative component with all new atoms
- pm->getInformativeComponents()->addSubComponent(newAtomSC());
- }
-
- // save the result
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-refined.pml";
- } else
- filename="refined.pml";
-
- cout << "-> saved as " << filename << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" refined");
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
-
- delete pm;
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/renError/renError.cpp b/modeling/libraries/pml/tools/renError/renError.cpp
deleted file mode 100644
index 717ba85..0000000
--- a/modeling/libraries/pml/tools/renError/renError.cpp
+++ /dev/null
@@ -1,255 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-#include <limits>
-
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-// -------------------- isIn ------------------------
-bool isIn (StructuralComponent *sc, Atom *a) {
- unsigned int i = 0;
- bool found = false;
-
- while (i < sc->getNumberOfStructures() && !found) {
- found = (sc->getStructure (i) == a);
- i++;
- }
-
- return found;
-}
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-
-public:
- ProgramArg (std::string defaults[][2], unsigned int sz) {
- for (unsigned int i = 0; i < sz; i++)
- insert (pair (defaults[i][0], defaults[i][1]));
- };
-
- void parse (int argc, char* argv[], std::string usage, int offset = 1) {
- for (int i = offset; i < argc; i++) {
- string flag (argv[i]);
- unsigned int equal = flag.find ('=');
-
- if (equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
-
- string name = flag.substr (0, equal);
-
- string value = flag.substr (equal + 1);
-
- if (find (name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
-
- operator[] (name) = value;
- }
- };
-
- void print (std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
-
- for (iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-simul", "" },
- { "-real", "" },
- { "-init", ""},
- { "-select", ""},
-};
-
-const char* usage = "usage:\n"
- "renError -simul=simulation.pml -real=real.pml -init=init.pml [-select=\"name\"]\n"
- "(Note no space around '=')\n"
- "Mandatory options: \n"
- "-simul pml document of the simulated results\n"
- "-real pml document of the real results\n"
- "-init pml document of the initial positions\n"
- "Optional option: \n"
- "-select name of the structural component or cell to export as csv\n"
- " (default = all atoms)\n"
- "\nCompute the Relative Energy Norm error (average, min, max, std-dev)"
- ;
-
-// global ProgramArgument
-ProgramArg argVal (defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// arguments
-string simul;
-string real;
-string initial;
-string selected;
-
-// -------------------- processArg ------------------------
-void processArg() {
- simul = argVal["-simul"];
- real = argVal["-real"];
- initial = argVal["-init"];
- selected = argVal["-select"];
-
- if (simul == "") {
- cerr << "Argument error: -simul argument is mandatory" << endl << usage << endl;
- exit (-1);
- }
-
- if (real == "") {
- cerr << "Argument error: -real argument is mandatory" << endl << usage << endl;
- exit (-1);
- }
-
- if (initial == "") {
- cerr << "Argument error: -init argument is mandatory" << endl << usage << endl;
- exit (-1);
- }
-
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "renError is computing the Relative Energy Norm Error for ";
-
- if (selected!="") {
- cout << "component/cell " << selected;
- } else {
- cout << "all atoms";
- }
- cout << " in " << simul << " over " << real << " (using initial positions in " << initial << ")" << endl;
-}
-
-// -------------------- main ------------------------
-int main (int argc, char ** argv) {
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse (argc, argv, usage);
- //argVal.print();
-
- processArg();
- printArg();
-
- try {
- // read the pmls
- cout << "-> please wait while reading " << simul << endl;
- PhysicalModel * simulPM = new PhysicalModel (simul.c_str());
-
- StructuralComponent *simulA = NULL;
- cout << "-> get ";
- if (selected=="") {
- cout << "all atoms" << endl;
- simulA = simulPM->getAtoms();
- } else {
- cout << selected << endl;
- Component *cpt = simulPM->getComponentByName(selected);
- if (cpt && (cpt->isInstanceOf("StructuralComponent") || cpt->isInstanceOf("Cell"))) {
- simulA = ((StructuralComponent *) cpt)->getAtoms();
- } else {
- // try harder: look for a cell
- Structure *s = simulPM->getStructureByName(selected);
- if (s && s->isInstanceOf("Cell")) {
- simulA = ((Cell*) s)->getAtoms();
- } else
- throw PMLAbortException("No structural components/cells named " + selected);
- }
- }
-
- cout << "-> please wait while reading " << real << endl;
- PhysicalModel * realPM = new PhysicalModel (real.c_str());
- cout << "-> please wait while reading " << initial << endl;
- PhysicalModel * initialPM = new PhysicalModel (initial.c_str());
-
- // for all selected atoms compute the error
- double min = numeric_limits<double>::max(), max = -1.0;
- double average = 0.0, stddev;
- double sumSquare = 0.0;
- double pos[3], posReal[3], pos0[3];
- double val;
-
- for (unsigned int i = 0; i < simulA->getNumberOfStructures(); i++) {
- Atom *a = (Atom *) simulA->getStructure(i);
- a->getPosition(pos);
- realPM->getAtom(a->getIndex())->getPosition(posReal);
- initialPM->getAtom(a->getIndex())->getPosition(pos0);
-
- double simulatedToReal = sqrt ( (pos[0] - posReal[0]) * (pos[0] - posReal[0])
- + (pos[1] - posReal[1]) * (pos[1] - posReal[1])
- + (pos[2] - posReal[2]) * (pos[2] - posReal[2]));
- double totalDisplacement = sqrt ( (pos0[0] - posReal[0]) * (pos0[0] - posReal[0])
- + (pos0[1] - posReal[1]) * (pos0[1] - posReal[1])
- + (pos0[2] - posReal[2]) * (pos0[2] - posReal[2]));
-
- if (totalDisplacement > 1e-10) {
- val = simulatedToReal / totalDisplacement;
- } else
- val = simulatedToReal; // error is 0% if simulatedToReal=0
-
- if (val<min)
- min=val;
-
- if (val>max)
- max=val;
-
- sumSquare += (val*val);
-
- average += val;
- }
-
- average /= ((double) simulA->getNumberOfStructures());
- sumSquare /= ((double) simulA->getNumberOfStructures());
- stddev = sqrt(sumSquare - average*average);
-
- // print values
- cout << "Average: " << average << endl;
- cout << "Std-dev: " << stddev << endl;
- cout << "Max: " << max << endl;
- cout << "Min: " << min << endl;
-
- } catch (PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/select/select.cpp b/modeling/libraries/pml/tools/select/select.cpp
deleted file mode 100644
index d9b1eda..0000000
--- a/modeling/libraries/pml/tools/select/select.cpp
+++ /dev/null
@@ -1,314 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-#include <float.h>
-
-// -------------------- ProgramArg ------------------------
-// Code inspired from ProgVals "Thinking in C++, 2nd Edition, Volume 2", chapter 4
-// by Bruce Eckel & Chuck Allison, (c) 2001 MindView, Inc.
-// Available at www.BruceEckel.com.
-// Program values can be changed by command lineclass ProgVals
-#include <map>
-#include <iostream>
-#include <string>
-
-class ProgramArg : public std::map<std::string, std::string> {
-public:
- ProgramArg(std::string defaults[][2], unsigned int sz) {
- for (unsigned int i = 0; i < sz; i++) insert(pair(defaults[i][0], defaults[i][1]));
- };
-
- void parse(int argc, char* argv[], std::string usage, int offset = 1) {
- for (int i = offset; i < argc; i++) {
- string flag(argv[i]);
- unsigned int equal = flag.find('=');
- if (equal == string::npos) {
- cerr << "Command line error: " << argv[i] << endl << usage << endl;
- continue; // Next argument
- }
- string name = flag.substr(0, equal);
- string value = flag.substr(equal + 1);
- if (find(name) == end()) {
- cerr << name << endl << usage << endl;
- continue; // Next argument
- }
- operator[](name) = value;
- }
- };
-
- void print(std::ostream& out = std::cout) {
- out << "Argument values:" << endl;
- for (iterator it = begin(); it != end(); it++)
- out << (*it).first << " = " << (*it).second << endl;
- };
-};
-
-string defaultsArg[][2] = {
- { "-f", "none" },
- { "-o", "none" },
- { "-name", "selected" },
- { "-xMin", "none" },
- { "-xMax", "none" },
- { "-yMin", "none" },
- { "-yMax", "none" },
- { "-zMin", "none" },
- { "-zMax", "none" },
-};
-
-const char* usage = "usage:\n"
- "select -f=file.pml [-o=out.pml] [-name=n] [-xMin=val] [-xMax=val] [-yMin=val] [-yMax=val] [-zMin=val] [-zMax=val]\n"
- "Create a new PML document which contains a new structural component containing only\n"
- "atoms which positions are in the defined bounding box\n"
- "(Note no space around '=')\n"
- "Where mandatory options are: \n"
- "f\tsource pml document\n"
- "And optional options are:\n"
- "o\tdestination pml document\n"
- "name\tname of the create SC\n"
- "xMin\tmin included value for x\n"
- "xMax\tmax included value for x\n"
- "... the same for y and z\n"
- "Note that if you do not provide value in a given direction, it means no selection has to be made\n";
-
-// global ProgramArgument
-ProgramArg argVal(defaultsArg, sizeof defaultsArg / sizeof *defaultsArg);
-
-// arguments/options
-string srcFile;
-string output;
-string name;
-double xMin, xMax;
-bool xMinProvided, xMaxProvided;
-double yMin, yMax;
-bool yMinProvided, yMaxProvided;
-double zMin, zMax;
-bool zMinProvided, zMaxProvided;
-
-// -------------------- processArg ------------------------
-void processArg() {
- srcFile = argVal["-f"];
- if (srcFile == "none") {
- cerr << "Argument error: -f argument is mandatory" << usage << endl;
- exit(-1);
- }
-
- output = argVal["-o"];
- if (output == "none") {
- output = srcFile;
- unsigned int pLast = output.rfind(".");
- if (pLast != string::npos) {
- output.erase(pLast);
- output += "-selected.pml";
- } else
- output = "selected.pml";
- }
-
- name = argVal["-name"];
-
- xMinProvided = (argVal["-xMin"] != "none");
- xMaxProvided = (argVal["-xMax"] != "none");
- yMinProvided = (argVal["-yMin"] != "none");
- yMaxProvided = (argVal["-yMax"] != "none");
- zMinProvided = (argVal["-zMin"] != "none");
- zMaxProvided = (argVal["-zMax"] != "none");
- if (xMinProvided)
- xMin = atof(argVal["-xMin"].c_str());
- else
- xMin = -DBL_MAX;
- if (xMaxProvided)
- xMax = atof(argVal["-xMax"].c_str());
- else
- xMax = DBL_MAX;
- if (yMinProvided)
- yMin = atof(argVal["-yMin"].c_str());
- else
- yMin = -DBL_MAX;
- if (yMaxProvided)
- yMax = atof(argVal["-yMax"].c_str());
- else
- yMax = DBL_MAX;
- if (zMinProvided)
- zMin = atof(argVal["-zMin"].c_str());
- else
- zMin = -DBL_MAX;
- if (zMaxProvided)
- zMax = atof(argVal["-zMax"].c_str());
- else
- zMax = DBL_MAX;
-}
-
-// -------------------- printArg ------------------------
-void printArg() {
- cout << "select from " << srcFile << " to " << output << " in SC \"" << name << "\"" << endl;
- cout << "using selection:"
- << " x in [" << xMin << "," << xMax << "],"
- << " y in [" << yMin << "," << yMax << "],"
- << " z in [" << zMin << "," << zMax << "],";
- cout << endl;
-}
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
-
- // Initialize and parse command line values
- // before any code that uses pvals is called:
- argVal.parse(argc, argv, usage);
-
- processArg();
- printArg();
-
-
- try {
- // read the pml
- cout << "-> please wait while reading " << srcFile << " for selection" << endl;
-
- PhysicalModel * pm = new PhysicalModel(srcFile.c_str());
-
- // create the new component
- StructuralComponent * selection;
- selection = new StructuralComponent(pm, name);
- Cell *selectionC = new Cell(pm, StructureProperties::POLY_VERTEX);
- selection->addStructure(selectionC);
-
- cout << "-> please wait while selecting...";
-
- unsigned int nbSelected = 0;
- StructuralComponent *srcA = pm->getAtoms();
- Atom *a;
- double pos[3];
-
- for (unsigned int i = 0; i < srcA->getNumberOfStructures(); i++) {
- // get the src position
- a = (Atom *) srcA->getStructure(i);
- a->getPosition(pos);
- // should it be selected
- if (pos[0] >= xMin && pos[0] <= xMax && pos[1] >= yMin && pos[1] <= yMax && pos[2] >= zMin && pos[2] <= zMax) {
- selectionC->addStructureIfNotIn(a);
- nbSelected++;
- }
- }
-
- cout << " " << nbSelected << " selected" << endl;
-
- // add the new SC to the informative component
- if (!pm->getInformativeComponents()) {
- MultiComponent *mc = new MultiComponent(pm, "Informative Components");
- pm->setInformativeComponents(mc);
- }
-
- pm->getInformativeComponents()->addSubComponent(selection);
-
- // save the result
- cout << "-> please wait while saving " << output << " " << endl;
-
- ofstream outputFile(output.c_str());
- pm->setName(pm->getName() + " + selection");
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
-
- // -- Select only the cells where atoms are all in the selection
- pm->getInformativeComponents()->removeSubComponent(selection);
- std::vector<Cell *> toRemove;
- // exclusive components
- for (unsigned i=0; i<pm->getExclusiveComponents()->getNumberOfCells(); i++) {
- Cell *c = pm->getCell(i);
- bool allInSelected = true;
- unsigned int j = 0;
- // check if all atoms of c are selected
- while (allInSelected && j<c->getNumberOfStructures()) {
- allInSelected = allInSelected && selectionC->isStructureIn(c->getStructure(j));
- j++;
- }
- // if some atoms of c are not selected, mark c to be deleted
- if (!allInSelected) {
- toRemove.push_back(c);
- }
- }
- // informative components
- for (unsigned i=0; i<pm->getInformativeComponents()->getNumberOfCells(); i++) {
- Cell *c = pm->getCell(i);
- bool allInSelected = true;
- unsigned int j = 0;
- // check if all atoms of c are selected
- while (allInSelected && j<c->getNumberOfStructures()) {
- allInSelected = allInSelected && selectionC->isStructureIn(c->getStructure(j));
- j++;
- }
- // if some atoms of c are not selected, mark c to be deleted
- if (!allInSelected) {
- toRemove.push_back(c);
- }
- }
- // now remove
- std::vector <StructuralComponent *> cUsedIn;
- for (unsigned int i=0; i<toRemove.size(); i++) {
- cUsedIn = toRemove[i]->getAllStructuralComponents();
- for (unsigned int j=0; j<cUsedIn.size(); j++) {
- cUsedIn[j]->removeStructure(toRemove[i]);
- }
- }
- // now set the atoms
- pm->setAtoms(selectionC,false);
-
- // print pm in another document
- string output2 = output;
- unsigned int pLast = output2.rfind(".");
- if (pLast != string::npos) {
- output2.erase(pLast);
- output2 += "-selected-only.pml";
- } else
- output2 = "selected-only.pml";
- ofstream outputFile2(output2.c_str());
- pm->setName(pm->getName() + " + selected only");
- pm->xmlPrint(outputFile2, false);
-
- // print the list of selected atoms as a lml target
- string outputTLName = name + ".txt";
- cout << "-> please wait while saving " << outputTLName << " " << endl;
- ofstream outputTargetList(outputTLName.c_str());
- for (unsigned int i = 0; i < selectionC->getNumberOfStructures(); i++) {
- outputTargetList << selectionC->getStructure(i)->getIndex();
- if (i < selectionC->getNumberOfStructures() - 1)
- outputTargetList << ",";
- }
- outputTargetList.close();
-
- delete pm;
- } catch (PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/tri2pml/tri2pml.cpp b/modeling/libraries/pml/tools/tri2pml/tri2pml.cpp
deleted file mode 100644
index 240d86f..0000000
--- a/modeling/libraries/pml/tools/tri2pml/tri2pml.cpp
+++ /dev/null
@@ -1,390 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-//
-// C++ Implementation: tri2pml
-//
-// Description:
-//
-// the first argument is the name of a file (the triangle file)
-// The triangle format is as follow :
-// - nr of vertices on the first line
-// - list of all coordinates
-// - nr of triangles
-// - and finally then the list of triangle node indexes
-
-// here is an example of a triangle file:
-// 201
-// 212.949997 210.878006 49.9991989 211.138 218.839005 49.9991989
-// 211.072998 214.925003 56.9520988 211.063995 206.959 56.9835014
-// 211.104004 202.927002 49.9990997 211.065002 206.959 43.0144997
-// 211.074005 214.925995 43.0461998 205.429993 226.548996 49.9990997
-// 205.117996 224.679001 57.9211998 205.076996 218.942993 63.7588005
-// 204.927002 211.143997 65.9347992 204.996002 203.227005 63.8834991
-// 204.904999 197.218994 58.0499001 205.156998 195.229996 49.9992981
-// 204.904007 197.218002 41.9476013 204.994003 203.225998 36.1137009
-// 204.925995 211.143997 34.0623016 205.076996 218.942993 36.2391014
-// 205.117996 224.679993 42.0769997 195.733994 233.279999 49.9991989
-// 195.425995 231.682007 58.651001 195.128006 227.037003 65.908699
-// 194.822998 219.987 70.8787994 194.681 211.408997 72.7072983 194.744995
-// 202.714005 70.9886017 194.737 195.322006 66.1066971 194.841003
-// 190.419006 58.8510017 194.957001 188.701004 49.9998016 194.837997
-// 190.419006 41.1478004 194.733002 195.320999 33.8917999 194.740005
-// 202.712997 29.0091991 194.677994 211.406998 27.2901993 194.820999
-// 219.985992 29.1184006 195.126999 227.037003 34.0895996 195.425995
-// 231.682007 41.3474007 182.660004 238.115997 49.9992981 182.451996
-// 236.664993 58.9043999 182.085007 232.565994 66.7394028 181.636993
-// 226.253998 72.8107986 181.039993 218.354004 76.5053024 180.806
-// 209.505997 77.3675003 181.317993 200.705994 75.1343002 181.591995
-// 193.024002 70.060997 181.746994 187.490005 62.9435005 181.738007
-// 184.610001 54.4679985 181.735992 184.610001 45.5321999 181.742004
-// 187.490005 37.0563011 181.585007 193.024002 29.9388008 181.311996
-// 200.703003 24.8658009 180.802994 209.505005 22.6319008 181.039001
-// 218.352005 23.4941006 181.636002 226.253006 27.1879997 182.084
-// 232.565002 33.2593994 182.451004 236.664993 41.0942001 167.472
-// 240.304993 49.9994011 167.315994 238.871994 59.1222 166.912003
-// 234.809998 67.2751999 166.324997 228.537994 73.7573013 165.412003
-// 220.673004 77.9524994 163.651001 212.367996 79.447998 165.856003
-// 202.725006 77.8918991 166.429993 194.429001 73.637001 166.608002
-// 187.936996 67.093399 166.662003 183.886993 59.0017014 166.753998
-// 182.429001 50.0009003 166.658997 183.886993 41.0004005 166.602005
-// 187.936996 32.908699 166.423004 194.427994 26.3642006 165.848999
-// 202.725006 22.1098995 163.647995 212.365997 20.5538998 165.410995
-// 220.671005 22.0482006 166.324005 228.537003 26.2420998 166.910995
-// 234.809006 32.7238998 167.315994 238.871994 40.8764 151.835999
-// 239.468002 49.9996986 151.660004 237.951004 59.1351013 151.274002
-// 233.610992 67.2938004 150.830002 226.940994 73.6313019 150.115997
-// 218.690994 77.3936005 149.949997 209.399002 78.143898 150.544998
-// 200.186996 75.7360992 150.968002 192.516006 70.6867981 151.110992
-// 186.903 63.3594017 151.274994 183.906998 54.6599998 151.274002
-// 183.906998 45.3432999 151.106995 186.903 36.6436005 150.962006
-// 192.516006 29.3166008 150.539001 200.188004 24.2667007 149.944
-// 209.399994 21.8596992 150.113007 218.690994 22.6088009 150.828003
-// 226.940002 26.3701 151.272003 233.610992 32.7069016 151.660004
-// 237.951004 40.8646011 137.266006 235.638 50.0005989 137.052002
-// 233.746994 59.2244987 136.727997 228.546005 67.0988007 136.380997
-// 220.755997 72.3856964 136.190002 211.565002 74.2394028 136.380997
-// 202.220993 72.3259964 136.684998 194.445007 67.0942993 136.906998
-// 189.218994 59.2350998 137.018005 187.365005 50.0015984 136.906006
-// 189.220001 40.767601 136.682007 194.447006 32.9085007 136.378006
-// 202.223007 27.6765995 136.186005 211.567001 25.7646008 136.378998
-// 220.757996 27.6180992 136.727005 228.546997 32.9045982 137.052002
-// 233.748001 40.7779999 125.139 229.164001 50.0024986 124.925003
-// 226.662003 58.8370018 124.797997 220.257996 65.3336029 124.700996
-// 211.386993 67.7137985 124.739998 202.552994 65.2739029 124.971001
-// 196.110001 58.8339996 125.170998 193.675995 50.0007019 124.971001
-// 196.112 41.167099 124.737999 202.557007 34.7289009 124.698997
-// 211.391006 32.2905998 124.796997 220.261993 34.6725006 124.926003
-// 226.664001 41.1697998 116.166 220.483002 50.0068016 116.230003
-// 215.843994 58.0330009 116.362 206.574005 58.0284996 116.43 201.942001
-// 49.9977989 116.365997 206.580994 41.9715004 116.234001 215.852005
-// 41.9760017 114.734001 210.878006 49.9991989 174.122116 217.068161
-// 31.7504559 172.845322 217.308792 48.5277519 167.153168 214.523697
-// 39.7758484 181.559479 210.526749 34.7726517 188.018204 215.87796
-// 39.7380791 184.143738 224.294205 42.0575256 197.055756 214.458328
-// 38.7829208 194.991425 210.800476 54.7543221 193.28717 202.241409
-// 40.9057541 204.158218 205.777817 50.9520607 197.350235 221.431885
-// 46.0859756 205.353348 213.013306 46.1315346 136.512878 212.353867
-// 63.7603073 136.803589 212.550674 48.2269096 137.144806 220.346344
-// 61.4673576 145.934494 210.935974 55.5667152 147.122406 219.049301
-// 65.7673264 127.637863 213.684891 57.7648048 155.055756 219.283691
-// 57.2817078 157.627609 218.691803 68.3738556 158.877777 227.444443
-// 60.4090767 157.239014 214.618912 42.7295799 150.678391 224.44072
-// 42.8708191 156.86319 228.042023 52.577179 167.16449 229.505142
-// 47.8503952 166.877808 224.886551 59.4400215 167.344315 209.241409
-// 57.7920151 156.016373 211.103333 65.0439377 125.501251 217.264023
-// 49.4178391 144.429642 209.962738 39.080452 130.778366 213.858948
-// 40.0691223 140.463333 222.008209 39.4355965 139.815598 225.72168
-// 49.4672127 136.28949 202.349487 41.0455284 145.962448 195.281769
-// 48.8271103 147.488693 198.23613 37.7950897 136.704361 200.614502
-// 59.242939 150.481583 199.411041 60.4735184 152.468857 198.37587
-// 45.7318878 157.677902 191.62085 51.4769325 196.616882 218.971909
-// 57.1982651 204.238693 213.30249 54.1141624 159.744888 232.552795
-// 43.8564072 168.660782 225.179016 37.9129562 191.862534 205.648514
-// 62.5157318 180.80452 209.505508 49.9997406 183.883865 197.143555
-// 56.6907158 145.60112 228.086609 57.396431 175.108383 231.910431
-// 53.4562454 175.68959 225.918808 59.6542206 185.944397 224.478149
-// 56.2026367 174.792694 192.130005 49.9737282 174.053543 196.442856
-// 37.7757225 182.502289 197.298569 48.2248764 166.223877 195.831894
-// 42.2486687 173.008575 202.979706 46.7984734 166.829437 195.548477
-// 57.1409531 157.996948 207.388916 32.52491 171.89621 216.18663
-// 67.2036209 173.671951 200.933304 66.221962 180.062073 210.119934
-// 64.1635513 187.354813 211.602554 65.3569107 194.980927 199.277191
-// 52.4201088 123.912224 207.559799 50.1583328 158.063065 201.043579
-// 66.0226746 157.567657 206.597137 51.0658493 183.447632 200.285034
-// 38.0877419 169.998138 205.641113 32.1545448 136.224457 199.33667
-// 50.2796478 159.975189 221.28949 31.02672 144.484528 214.412399
-// 33.054985 146.594879 207.633087 66.7936783 158.706665 193.814636
-// 36.3628883
-// 1019
-// 129 130 131 132 133 129 130 134 129 133 132 51 135 133 32 31 135 136 137 138
-// 135 136 139 133 135 18 139 140 135 138 137 16 135 16 137 31 141 142 143 144 141
-// 98 145 97 141 146 112 143 147 148 149 145 147 150 144 151 130 147 152 150 150
-// 130 153 152 154 147 152 130 147 155 130 154 156 154 155 147 141 143 142 146 142
-// 146 143 157 142 158 159 160 142 160 157 161 162 163 164 158 163 144 165 166 166
-// 163 101 165 85 86 103 163 163 144 166 167 83 163 101 166 84 163 168 85 163 168
-// 167 166 84 163 83 168 163 83 168 166 169 8 170 140 171 172 151 92 171 172 92 73
-// 136 173 174 175 171 172 73 74 171 55 152 153 171 153 74 55 176 145 77 96 143
-// 144 147 145 161 144 147 143 147 143 176 161 161 152 75 176 176 161 94 75 176 76
-// 152 75 147 176 145 149 149 76 57 56 149 145 148 78 147 152 149 154 149 154 56
-// 57 149 78 148 58 149 58 154 57 177 153 74 54 177 178 57 154 177 153 54 134 177
-// 134 130 153 178 177 37 179 177 153 56 55 130 154 178 177 180 181 182 47 180 181
-// 183 184 180 64 185 65 180 65 183 66 180 182 45 46 180 184 183 185 168 185 65
-// 183 131 183 150 186 187 61 188 41 187 178 58 39 178 187 189 39 187 40 60 41 178
-// 189 179 39 187 188 189 41 190 25 173 24 24 173 136 11 136 179 174 190 169 190
-// 23 179 190 40 189 41 133 134 34 52 179 190 23 39 40 39 190 189 13 191 12 138
-// 192 159 162 118 142 192 165 146 187 156 155 193 136 12 170 11 136 138 191 137
-// 179 174 190 189 136 179 133 174 136 169 11 170 136 190 174 173 136 137 174 133
-// 130 131 132 184 129 172 130 134 172 130 150 131 131 130 150 184 130 150 184 194
-// 49 195 31 132 130 189 155 174 189 155 187 130 196 181 49 195 196 49 181 68 129
-// 131 196 132 192 159 118 126 142 165 192 197 196 186 131 70 196 50 132 49 186
-// 198 70 90 167 150 144 194 150 199 198 186 151 150 199 198 186 90 199 198 186 88
-// 199 89 186 150 199 158 194 130 147 155 158 186 150 167 150 131 198 172 150 199
-// 158 151 147 150 194 144 200 98 99 80 129 196 50 132 129 172 72 198 192 197 115
-// 116 129 132 50 51 196 186 183 131 131 184 150 183 186 201 68 196 196 186 69 68
-// 186 150 131 198 130 174 132 133 88 201 68 186 194 155 156 166 150 194 130 147
-// 147 194 155 156 158 167 150 144 130 174 155 184 135 136 138 140 147 194 156 144
-// 155 174 175 184 130 155 187 154 161 110 94 109 194 184 185 183 142 151 161 144
-// 142 197 162 144 162 144 158 142 28 27 175 45 144 197 162 163 193 156 80 60 187
-// 193 155 188 193 82 166 83 155 193 185 188 80 193 200 156 178 179 38 39 193 156
-// 166 200 135 140 16 17 144 145 200 156 176 95 143 96 145 143 97 96 145 79 156
-// 148 147 176 149 152 196 183 186 201 67 68 201 183 196 181 183 68 196 181 184
-// 183 180 181 66 183 181 49 195 48 181 66 183 67 180 181 184 182 180 44 185 64
-// 201 168 85 66 194 167 168 166 168 185 64 65 167 168 85 201 194 183 168 167 168
-// 66 183 65 175 44 26 43 175 174 136 191 175 184 180 185 155 175 174 189 133 130
-// 179 134 190 174 173 189 187 193 60 156 184 150 183 194 147 150 151 152 152 130
-// 153 154 147 161 176 152 172 129 52 134 194 168 183 185 196 132 184 195 181 184
-// 182 195 193 83 185 63 194 185 155 166 186 158 164 167 194 166 168 185 168 201
-// 183 66 168 201 167 183 201 183 66 67 68 181 183 67 201 164 88 87 168 83 185 166
-// 177 56 154 57 177 130 179 178 130 178 189 179 187 59 39 58 178 154 58 57 200
-// 166 100 165 141 200 99 165 187 156 60 148 81 80 193 200 144 166 200 165 141 144
-// 200 165 141 142 144 165 141 97 145 143 199 158 105 88 186 158 199 88 85 201 86
-// 167 169 22 10 9 199 91 151 198 108 160 107 91 160 107 91 199 199 159 107 106
-// 158 164 105 88 186 164 158 88 160 159 107 199 200 99 81 80 188 63 44 43 135 34
-// 133 139 33 135 34 133 135 32 133 33 133 137 31 135 133 32 132 51 133 139 34 134
-// 174 184 132 195 133 179 139 134 135 138 16 140 138 137 15 191 138 140 6 16 138
-// 13 191 14 138 6 140 1 138 191 15 14 188 44 185 175 140 6 7 1 62 63 193 188 187
-// 155 189 188 43 189 175 188 176 76 149 152 141 97 143 112 187 130 178 189 188
-// 189 41 42 155 185 193 166 192 118 162 117 158 159 199 105 169 23 11 10 159 158
-// 199 160 159 157 121 127 150 152 153 151 174 133 130 179 179 134 36 20 177 179
-// 36 37 177 153 154 56 196 132 131 184 139 179 20 134 174 137 195 132 144 158 167
-// 163 171 172 74 153 191 29 14 28 199 160 151 91 171 151 172 153 182 175 184 180
-// 180 181 47 66 168 185 83 64 166 100 82 200 163 168 85 167 174 175 184 182 174
-// 184 195 182 180 185 44 175 147 148 156 154 188 185 44 63 177 134 54 36 172 134
-// 53 54 177 179 130 134 177 179 134 36 191 175 173 136 170 11 4 3 155 166 193 156
-// 151 152 75 161 149 148 154 58 130 174 184 132 166 200 82 193 187 193 61 60 187
-// 59 148 60 189 179 39 190 187 154 155 156 177 130 154 153 12 170 138 136 195 182
-// 47 29 181 48 195 47 167 186 150 183 185 65 183 180 163 165 197 101 192 157 128
-// 123 163 162 164 103 194 155 185 184 165 166 100 101 164 167 163 86 163 197 162
-// 103 152 153 55 56 176 94 161 95 163 101 197 102 192 159 127 157 142 161 157 143
-// 141 142 165 146 142 159 192 157 192 123 146 157 160 159 157 121 161 143 95 111
-// 161 93 151 109 160 161 151 109 118 159 105 119 192 162 197 117 138 15 6 5 160
-// 151 161 142 176 145 96 143 176 161 143 95 161 157 110 121 194 166 144 167 72
-// 172 92 198 186 89 199 90 172 153 54 74 130 174 179 189 198 91 71 90 146 112 143
-// 111 199 158 151 160 163 86 103 164 63 193 188 185 194 144 166 156 79 156 60 80
-// 145 200 79 98 149 145 78 77 145 148 78 79 197 162 103 117 39 187 189 40 170 9
-// 10 3 192 114 146 124 193 166 185 83 148 187 154 58 193 82 62 81 141 112 146 113
-// 181 195 182 47 191 28 182 29 141 113 146 114 151 198 91 92 192 127 159 126 193
-// 60 80 61 154 130 178 187 149 58 77 78 148 60 59 79 190 41 189 42 169 179 21 20
-// 190 173 42 189 139 35 134 20 139 134 35 34 139 8 140 19 140 7 2 1 135 136 133
-// 137 196 132 195 49 174 195 137 182 138 5 1 4 170 1 2 3 169 21 22 9 192 157 127
-// 128 179 39 22 38 132 133 129 130 140 7 18 19 135 33 17 32 157 122 111 110 146
-// 124 113 123 192 125 116 115 192 126 117 125 159 119 127 120 159 127 119 126 192
-// 117 126 118 137 29 191 182 192 125 128 126 197 115 116 101 159 118 126 119 159
-// 127 121 120 146 111 123 112 157 123 111 122 192 115 124 125 201 167 183 186 192
-// 126 128 127 173 11 25 12 197 117 103 116 160 108 120 121 170 3 4 1 161 121 110
-// 109 52 172 53 72 159 106 119 107 157 127 128 122 172 151 92 198 160 107 120 108
-// 139 136 179 133 11 24 169 136 162 118 159 105 162 118 105 104 148 79 156 60 137
-// 182 195 29 157 122 110 121 129 130 172 131 159 199 105 106 199 107 90 106 146
-// 113 124 114 129 196 70 50 186 198 131 70 146 123 113 112 170 9 3 2 165 114 100
-// 99 192 116 125 117 143 96 111 112 129 70 198 71 187 59 60 40 161 111 95 110 179
-// 21 37 38 145 97 79 78 145 77 96 78 192 124 115 114 157 122 121 127 145 98 79 97
-// 192 123 128 124 160 92 91 108 160 92 108 109 109 94 161 93 199 106 90 89 160
-// 121 109 108 197 116 103 102 188 175 43 44 129 134 133 52 165 115 101 100 162
-// 104 103 117 101 166 100 83 199 106 89 105 159 107 119 120 164 105 87 104 164 88
-// 87 105 145 78 96 97 162 104 117 118 190 42 25 41 169 139 136 179 195 31 132 137
-// 86 167 163 85 141 113 114 99 196 49 69 50 165 114 115 100 193 83 63 82 141 97
-// 113 98 132 137 31 133 173 174 175 189 129 72 52 71 144 158 142 151 144 156 200
-// 166 164 104 87 86 192 124 146 123 141 112 113 97 139 140 169 136 192 146 114
-// 165 200 100 82 99 176 96 77 95 147 144 161 151 148 78 59 58 176 95 76 94 192
-// 197 165 115 151 109 93 92 174 137 191 182 171 93 74 73 163 102 84 101 198 71 91
-// 72 183 68 201 196 196 186 70 69 163 197 103 102 140 169 136 170 136 11 173 12
-// 68 186 69 88 169 179 22 21 198 90 71 70 73 72 172 92 23 179 22 169 195 48 30 47
-// 150 172 198 151 186 90 70 89 25 190 173 42 169 9 170 8 170 140 8 2 163 101 84
-// 83 172 73 53 72 199 88 105 89 143 111 96 95 200 82 193 81 66 201 86 85 201 86
-// 67 66 188 42 43 189 157 122 128 123 174 133 137 132 168 84 64 83 136 12 173 191
-// 93 75 151 171 176 75 94 76 153 172 130 150 166 82 100 83 142 162 192 159 161
-// 110 95 94 99 200 81 82 169 190 24 23 197 116 102 101 143 96 112 97 12 191 26
-// 173 148 79 59 78 200 79 98 80 196 131 183 184 26 43 25 173 163 84 102 85 138
-// 170 4 1 187 41 189 40 193 81 61 80 191 27 175 28 26 191 175 173 176 95 77 76 37
-// 56 36 177 191 12 138 136 56 36 177 55 4 12 170 138 171 93 73 92 54 73 172 74
-// 171 92 151 93 190 169 136 179 152 154 56 149 153 152 154 56 140 8 2 19 75 151
-// 171 152 129 50 70 51 196 70 50 69 171 93 75 74 171 152 151 153 75 93 151 161
-// 191 28 14 27 93 94 161 75 164 104 86 103 192 128 125 124 150 172 151 153 171 75
-// 152 55 201 87 67 86 201 87 88 68 161 111 157 143 176 149 77 145 79 156 200 145
-// 159 106 105 119 161 110 157 111 199 107 91 90 163 144 158 162 142 158 162 159
-// 129 71 52 51 168 84 85 65 186 89 69 88 72 129 52 172 145 143 176 147 147 145
-// 156 148 175 180 45 44 179 38 22 21 196 68 69 49 181 67 68 48 138 4 13 5 180 66
-// 46 65 155 184 175 185 152 56 55 75 133 33 52 34 193 82 63 62 193 61 81 62 200
-// 99 165 100 186 89 70 69 155 188 175 189 54 36 74 177 175 28 182 191 182 175 180
-// 45 31 133 32 132 45 28 182 175 137 30 195 31 140 17 7 6 57 177 37 178 129 131
-// 172 198 129 71 198 72 158 159 105 162 187 39 59 40 176 77 149 76 178 57 58 38
-// 186 201 167 164 177 74 153 55 149 56 152 76 178 38 58 39 149 57 76 77 187 154
-// 58 178 179 178 38 37 160 159 120 107 160 109 151 92 160 161 109 121 163 103 85
-// 102 183 167 194 150 150 158 144 151 53 54 73 172 151 158 142 160 182 47 29 46
-// 135 31 17 16 155 188 185 175 180 65 46 45 134 35 54 20 134 34 53 35 185 64 44
-// 63 168 65 85 66 180 46 66 47 133 51 33 32 160 159 121 120 160 161 121 157 142
-// 157 160 159 139 20 8 35 138 15 137 16 180 64 45 44 129 133 51 52 132 31 50 32
-// 134 54 35 53 36 74 177 55 141 200 145 98 138 14 5 13 134 172 53 52 169 8 21 9
-// 190 40 23 39 130 134 172 153 160 151 91 92 198 92 72 91 173 12 25 26 181 47 67
-// 48 187 193 188 61 195 49 31 48 187 58 148 59 147 154 149 148 195 29 47 30 39
-// 179 22 23 137 29 30 15 182 29 28 46 180 65 45 64 170 11 3 10 129 70 196 131 37
-// 178 38 57 175 44 27 26 168 84 65 64 132 50 31 49 195 30 48 31 199 198 90 91 136
-// 24 169 190 188 62 43 42 43 175 173 26 193 62 188 61 149 77 58 57 135 33 34 18
-// 179 37 20 36 182 45 46 28 173 43 25 42 189 42 43 173 163 165 144 197 181 48 68
-// 49 190 41 25 24 136 191 174 137 56 57 177 37 190 173 136 24 27 26 191 175 188
-// 61 62 42 190 23 40 24 141 113 99 98 23 169 11 24 152 56 75 76 190 41 24 40 169
-// 20 139 179 169 8 139 20 169 140 139 8 135 139 136 140 187 41 60 61 134 34 52 53
-// 147 145 144 156 179 20 37 21 139 19 140 18 171 55 74 75 135 140 17 18 135 139
-// 18 34 137 15 191 29 138 170 1 140 170 140 2 1 169 170 10 11 136 138 140 170 139
-// 19 35 8 135 32 17 31 169 10 22 23 134 20 54 36 169 20 21 8 135 33 18 17 132 51
-// 32 50 140 18 7 17 129 131 198 70 138 1 5 6 181 67 47 66 169 10 170 9 80 79 156
-// 200 170 2 8 9 139 34 35 19 137 31 16 30 138 16 6 15 137 30 16 15 188 42 41 61
-// 172 54 153 134 138 5 14 15 142 192 146 157 191 13 27 14 170 12 4 11 191 14 29
-// 15 147 151 161 152 191 26 27 13 180 47 182 46 186 201 164 88 137 29 195 30 196
-// 181 195 184 165 197 101 115 201 87 68 67 141 165 99 114 141 145 144 143 173 189
-// 175 43 142 192 162 197 192 165 114 115 185 63 83 64 138 4 12 13 13 12 191 26
-// 154 148 156 187 164 104 162 105 146 157 123 111 201 86 164 87 173 25 11 24 201
-// 164 86 167 163 164 158 167 192 117 197 116 175 45 27 44 158 164 162 105 129 71
-// 51 70 164 103 162 104 133 52 33 51 141 114 146 165 142 143 144 161 146 157 111
-// 143 182 174 175 191 141 200 98 99 140 16 17 6 140 19 2 7 139 18 34 19 188 63 43
-// 62 184 155 130 194 141 144 145 200 142 197 144 165 0
-
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <stdlib.h>
-
-using namespace std;
-
-int main(int argc, char ** argv) {
-
- if (argc<2 || argc>3) {
- cout << "usage: " << argv[0] << endl;
- cout << "\t" << argv[0] << " file.trian [offset]" << endl;
- cout << "offset is an integer equal to the number of informative number to dump after the description of each triangle (see source code!)" << endl;
- exit(-1);
- }
-
- // determine if there is an offset
- unsigned int offset = (argc==2)?0:atoi(argv[2]);
-
- // open the noboite.txt file
- string filename(argv[1]);
- ifstream nobox(filename.c_str());
-
- // save the result in the pml file
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-out.pml";
- } else
- filename += "-out.pml";
- ofstream outputFile(filename.c_str());
- outputFile << "<!-- Created by tri2pml (c) E Promayon, TIMC (c) 1997-2006 -->" << endl;
- outputFile << "<physicalModel name=\"from triangles\" >" << endl;
-
- // vertices
- unsigned int nVertices;
- nobox >> nVertices;
-
- outputFile << "<atoms>" << endl;
- outputFile << "<structuralComponent name=\"vertices\">" << endl;
-
- double x, y, z;
- for (unsigned int i=1; i<=nVertices; i++) {
- // read position
- nobox >> x;
- nobox >> y;
- nobox >> z;
- // write atom
- outputFile << "<atom>" << endl;
- // indexes start at 0
- outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
- outputFile << "</atom>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</atoms>" << endl;
-
- cout << "-> created " << nVertices << " atoms" << endl;
-
- // regions
- outputFile << "<exclusiveComponents>" << endl;
- outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
- outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
- outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
- for (unsigned int i=1; i<=nVertices; i++)
- outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
- outputFile << "</cell>" << endl;
- outputFile << "</structuralComponent>" << endl;
-
- cout << "-> created region" << endl;
-
-// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
- unsigned int nTetra;
- nobox >> nTetra;
-
- outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
- outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- cout << "-> creating triangles (offset=" << offset << ", nb of triangles to read=" << nTetra << endl;
-
- int id;
- for (unsigned int i=0; i<nTetra; i++) {
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties type=\"TRIANGLE\" />" << endl;
- for (unsigned int j=0; j<3; j++) {
- nobox >> id;
- outputFile << "<atomRef index=\"" << id << "\" />" << endl;
- }
- // discard the next "offset" number of integer
- for (unsigned int j=0; j<offset; j++)
- nobox >> id;
- outputFile << "</cell>" << endl;
- }
-
- cout << "...finished (" << nTetra << " triangles created)" << endl;
- cout << "Results in " << filename << endl;
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</multiComponent>" << endl;
- outputFile << "</exclusiveComponents>" << endl;
- outputFile << "</physicalModel>" <<endl;
-
- outputFile.close();
-
-}
diff --git a/modeling/libraries/pml/tools/triangulate/triangulate.cpp b/modeling/libraries/pml/tools/triangulate/triangulate.cpp
deleted file mode 100644
index d63dce1..0000000
--- a/modeling/libraries/pml/tools/triangulate/triangulate.cpp
+++ /dev/null
@@ -1,143 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-#include <math.h>
-#include <limits.h>
-
-// -------------------- main ------------------------
-int main(int argc, char ** argv) {
-
- if (argc!=3) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.pml component" << endl;
- cout << "If component is made of quad and triangle, transform all quads in triangle, output to: file-triangulated.pml" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- try {
- // read the pml
- string filename(argv[1]);
- string component(argv[2]);
- cout << "-> please wait while reading " << filename << " for triangulation" << endl;
-
- PhysicalModel * pm = new PhysicalModel(filename.c_str());
-
- // create the new component
- StructuralComponent * moore;
- moore = new StructuralComponent(pm, component);
-
- // get the component
- Component *cpt = pm->getComponentByName(argv[2]);
- if (!cpt) {
- throw PMLAbortException("No component named " + component);
- }
- if (!cpt->isInstanceOf("StructuralComponent") || ((StructuralComponent *)cpt)->composedBy()!=StructuralComponent::CELLS) {
- throw PMLAbortException(component + " is not a structural component made of cells");
- }
- StructuralComponent *sc = (StructuralComponent *) cpt;
- StructuralComponent *newSc = new StructuralComponent(pm,component+"-triangulated");
- unsigned int triangulated=0;
- cout << "-> please wait while triangulating..." << endl;
-
- // check each cell, everytime a quad is found, triangulate it
- Cell *c;
- Cell *newCell;
- for (unsigned int i=0; i<sc->getNumberOfStructures(); i++) {
- c = sc->getCell(i);
- switch (c->getType()) {
- case StructureProperties::QUAD:
- triangulated++;
- /*
- * QUAD
- * 3--------2 lines: triangulation:
- * | | 0,1 0,1,3
- * | | 1,2 1,2,3
- * | | 2,3
- * 0--------1 3,0
- */
- newCell = new Cell(pm, StructureProperties::TRIANGLE);
- newCell->addStructure(c->getStructure(0));
- newCell->addStructure(c->getStructure(1));
- newCell->addStructure(c->getStructure(3));
- newSc->addStructure(newCell);
- newCell = new Cell(pm, StructureProperties::TRIANGLE);
- newCell->addStructure(c->getStructure(1));
- newCell->addStructure(c->getStructure(2));
- newCell->addStructure(c->getStructure(3));
- newSc->addStructure(newCell);
- break;
-
- case StructureProperties::TRIANGLE:
- // create a new identical cell
- newCell = new Cell(pm,c->getType());
- for (unsigned int j=0; j<c->getNumberOfStructures(); j++)
- newCell->addStructure(c->getStructure(j));
- newSc->addStructure(newCell);
- break;
-
- default:
- cout << "Cannot triangulate cell" << c->getIndex() << " (" << StructureProperties::toString(c->getType()) << ")" << endl;
- break;
- }
- }
-
- // add the new SC to the informative component
- if (!pm->getInformativeComponents()) {
- MultiComponent *mc = new MultiComponent(pm);
- pm->setInformativeComponents(mc);
- }
-
- pm->getInformativeComponents()->addSubComponent(newSc);
-
- // save the result
- unsigned int pLast = filename.rfind(".");
- if (pLast != string::npos) {
- filename.erase(pLast);
- filename += "-triangulated.pml";
- } else
- filename="triangulated.pml";
-
- cout << "-> please wait while saving " << filename << " " << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" Triangulated");
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
-
- delete pm;
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-}
diff --git a/modeling/libraries/pml/tools/vtk2model/vtk2model.cpp b/modeling/libraries/pml/tools/vtk2model/vtk2model.cpp
deleted file mode 100644
index a653f31..0000000
--- a/modeling/libraries/pml/tools/vtk2model/vtk2model.cpp
+++ /dev/null
@@ -1,1253 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// Description: very simple vtk unstructured grid export to biomecanichal pml
-// this is equivalent to use vtk2pml -> optimizeMesh -> elementsToNeighborhood
-//
-// Note: this transformation is done manually, without the help of the VTK API
-// Pros: no dependencies
-// Cons: lots of things/case/vtk types not take into account, very simple transformation
-//
-// the first argument is the name of a vtk file
-
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <cstdlib>
-#include <sstream>
-
-using namespace std;
-
-// the input .obj file
-std::ifstream vtkFile;
-unsigned lineNr;
-bool eof;
-
-typedef struct {
- string directive;
- string data;
- bool ok;
-} ObjLine;
-
-ObjLine currentLine;
-
-// -------------------- getNext ------------------------
-// get the next current line
-void getNext() {
- char l[200];
- string line;
- currentLine.ok = false;
-
- while ( !eof && !currentLine.ok ) {
- eof = ! ( vtkFile.getline ( l,199 ) );
- lineNr++;
-
- if ( l[0]!='#' ) {
- line = l;
-
- unsigned int space = line.find ( ' ' );
-
- if ( space != string::npos && space != 0 ) {
- currentLine.directive = line.substr ( 0,space );
- currentLine.data = line.substr ( space+1 );
- currentLine.ok = true;
- }
- }
- }
-
-}
-
-
-// -------------------- getCountFromDirective ------------------------
-int getCountFromDirective ( string directive ) {
- // go to the first directive
- while ( !eof && currentLine.directive!=directive ) {
-// cout << "l=" << currentLine.directive << endl;
- getNext();
- }
-
- if ( !eof )
- return atoi ( currentLine.data.c_str() );
- else
- return 0;
-}
-
-// -----------------------------------------------------------------------------------
-
-#include <math.h>
-#include <iostream>
-#include <string>
-using namespace std;
-
-#include <PhysicalModel.h>
-#include <MultiComponent.h>
-#include <StructuralComponent.h>
-#include <Atom.h>
-
-/// global variables
-// -------------------- the physical model being processed ------------------------
-PhysicalModel * pm;
-
-// -------------------- all cluster ------------------------
-class Cluster;
-vector <Cluster *> allClusters;
-
-// first atom is now replaced by 2nd atom
-map<Atom *, Atom *> replacement;
-
-double precision;
-unsigned int nrOfNewAtoms;
-
-/** class Cluster
- *
- * a cluster is a set of point that are nearly at the same place (at a given precision)
- */
-class Cluster {
-public:
- /// create a cluster of this atom, using the given precision
- Cluster(double distance);
-
- ~Cluster();
-
- /// get composing atom by index
- Atom * getAtom(unsigned int id);
-
- /// add an atom to the cluster if in the given precision (true if added) (update center)
- bool addAtom(Atom *);
-
- /// get the center (create if necessary)
- Atom * getCenter();
-
- /// get nr of atoms in the cluster
- unsigned int nrOfAtoms();
-
- /// current atom index for new atoms
- static unsigned int atomIndex;
-
-private:
- /// cluster center
- Atom *center;
-
- /// the cluster cell
- Cell *myCell;
-
- /// distance precision
- double distance;
-
- /// update center position
- void updateCenter();
-};
-
-unsigned int Cluster::atomIndex = 10000;
-
-
-// -------------------- constructor/destructor ------------------------
-Cluster::Cluster(double distance) {
- this->distance = distance;
- myCell = new Cell(pm, StructureProperties::POLY_VERTEX);
- center = new Atom(pm, Cluster::atomIndex++);
- Cluster::atomIndex++;
- nrOfNewAtoms++;
- //pm->addAtom(center);
-}
-
-Cluster::~Cluster() {
- delete myCell;
- delete center;
-}
-
-// -------------------- updateCenter ------------------------
-void Cluster::updateCenter() {
- double pos[3];
- double posC[3];
- unsigned int size = myCell->getNumberOfStructures();
-
- for (unsigned int j=0; j<3; j++)
- posC[j] = 0.0;
-
- for (unsigned int i=0; i<size; i++) {
- ((Atom *)myCell->getStructure(i))->getPosition(pos);
- for (unsigned int j=0; j<3; j++)
- posC[j] += pos[j];
- }
-
- for (unsigned int j=0; j<3; j++)
- posC[j] /= ((double)size);
-
- center->setPosition(posC);
-}
-
-// -------------------- getCenter ------------------------
-Atom * Cluster::getCenter() {
- return center;
-}
-
-// -------------------- getAtom ------------------------
-Atom * Cluster::getAtom(unsigned int id) {
- return ((Atom*)myCell->getStructure(id));
-}
-
-// -------------------- nrOfAtoms ------------------------
-unsigned int Cluster::nrOfAtoms() {
- return myCell->getNumberOfStructures();
-}
-
-// -------------------- addAtom ------------------------
-bool Cluster::addAtom(Atom *a) {
- double posC[3];
- center->getPosition(posC);
- double pos[3];
- a->getPosition(pos);
- double dist = 0.0;
- for (unsigned int i=0; i<3; i++)
- dist += (posC[i]-pos[i])*(posC[i]-pos[i]);
- dist = sqrt(dist);
-
- if (nrOfAtoms()==0 || dist<distance) {
- myCell->addStructure(a);
- updateCenter();
- return true;
- } else {
- return false;
- }
-}
-
-
-// -------------------- insert ------------------------
-Cluster * insert(Atom *a) {
- vector <Cluster *>::iterator it;
-
- // look into allClusters for equivalence
- it = allClusters.begin();
- while (it!=allClusters.end() && !(*it)->addAtom(a))
- it++;
-
- // not found => insert
- if (it==allClusters.end()) {
- // no cluster found: create a new one
- Cluster *c = new Cluster(precision);
- c->addAtom(a);
- allClusters.push_back(c);
- return c;
- } else {
- return (*it);
- }
-
-}
-
-// -------------------- update ------------------------
-void update(MultiComponent *mc) {
- if (mc==NULL) {
- cout << "0 cells)" << endl;
- return;
- }
-
- cout << mc->getNumberOfCells() << " cells)" << endl;
- unsigned int degeneratedCount=0;
-
- // WARNING non-rentrant loop
- for (unsigned int i=0; i<mc->getNumberOfCells(); i++) {
- Cell *c = mc->getCell(i);
- StructuralComponent *sc = c->getAtoms();
- c->deleteAllStructures();
- cout << '\r' << i << flush;
- // remove previous list
- for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
- c->removeStructure(sc->getStructure(j));
- }
- // check it was done properly
- if (c->getNumberOfStructures()>0) {
- cout << "Cell #" << c->getIndex() << " cannot delete all atoms (still has " <<c->getNumberOfStructures() << ")" << endl;
- }
- // add new atoms
- map<Atom *, Atom *>::iterator proxy;
- for (unsigned int j=0; j<sc->getNumberOfStructures(); j++) {
- proxy = replacement.find((Atom *)sc->getStructure(j));
- if (proxy==replacement.end()) {
- // not found?!
- cout << "Cell #" << c->getIndex() << " cannot find replacement for Atom#" << sc->getStructure(i)->getIndex() << endl;
- } else {
- c->addStructureIfNotIn(proxy->second);
- }
- }
- // check that the cell did not degenerate
- StructureProperties::GeometricType t = c->getType();
- int normalSize = ((t == StructureProperties::LINE)?2:
- ((t == StructureProperties::TRIANGLE)?3:
- ((t == StructureProperties::QUAD)?4:
- ((t == StructureProperties::TETRAHEDRON)?4:
- ((t == StructureProperties::WEDGE)?6:
- ((t == StructureProperties::HEXAHEDRON)?8:-1))))));
- if (normalSize!=-1 && normalSize!=(int)c->getNumberOfStructures()) {
- cout << "deleting degenerated Cell #" << c->getIndex() << ": it is a " <<
- StructureProperties::toString(t) << " and should have " << normalSize <<
- " atoms, but has now " << c->getNumberOfStructures() << flush;
- degeneratedCount++;
- c->getStructuralComponent(0)->removeStructure(c);
- // a cell was deleted, as it is a non re-entrant loop, get back one index
- i--;
- }
- }
- cout << flush;
- cout << degeneratedCount << " degenerated cells removed " << endl;
-}
-
-// -------------------- saveClusters ------------------------
-void saveClusters(string clusterFile) {
- stringstream clusterOSS;
- clusterOSS << precision;
-
-
- string nonClusterFile = clusterFile;
- unsigned int pLast = clusterFile.rfind(".");
-
- if (pLast != string::npos) {
- clusterFile.erase(pLast);
- clusterFile += "-clusters-" + clusterOSS.str() + ".txt";
- } else
- clusterFile="clusters-" + clusterOSS.str() + ".txt";
-
- pLast = nonClusterFile.rfind(".");
- if (pLast != string::npos) {
- nonClusterFile.erase(pLast);
- nonClusterFile += "-non-clusters-" + clusterOSS.str() + ".txt";
- } else
- nonClusterFile = "non-clusters-" + clusterOSS.str() + ".txt";
-
- cout << "-> please wait while saving cluster informations in " << clusterFile << " (" << pm->getNumberOfAtoms() - allClusters.size() << " clusters) and non-clusters in " << nonClusterFile << endl;
- ofstream clusterOutputFile(clusterFile.c_str());
- ofstream nonClusterOutputFile(nonClusterFile.c_str());
- for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
- if ((*it)->nrOfAtoms()>1) {
- clusterOutputFile << (*it)->getCenter()->getIndex() << " : ";
- for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++)
- clusterOutputFile << (*it)->getAtom(i)->getIndex() << " ";
- clusterOutputFile << endl;
- } else {
- nonClusterOutputFile << (*it)->getAtom(0)->getIndex() << endl;
- }
- }
- clusterOutputFile.close();
- nonClusterOutputFile.close();
-}
-
-// -------------------- optimize ------------------------
-void optimize(string clusterFile) {
- StructuralComponent *atoms = pm->getAtoms();
-
- // create clusters
- for (unsigned int i=0; i<atoms->getNumberOfStructures(); i++) {
- insert((Atom *) atoms->getStructure(i));
- cout << '\r' << i << flush;
- }
- cout << endl;
-
- cout << "found " << allClusters.size() << " clusters, for " << atoms->getNumberOfStructures() << " atoms" << endl;
- cout << "-> please wait while removing " << atoms->getNumberOfStructures() - allClusters.size() << " atoms" << endl;
-
- // create newAtoms with all atoms that are alone in their clusters and
- // all cluster centers
- StructuralComponent * newAtoms = new StructuralComponent(pm);
- for (vector <Cluster *>::iterator it = allClusters.begin(); it!=allClusters.end(); it++) {
- if ((*it)->nrOfAtoms()==1) {
- newAtoms->addStructure((*it)->getAtom(0));
- replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(0), (*it)->getAtom(0)));
- } else {
- newAtoms->addStructure((*it)->getCenter());
- // memorize replacements
- for (unsigned int i=0; i<(*it)->nrOfAtoms(); i++) {
- replacement.insert(pair<Atom*,Atom*>((*it)->getAtom(i), (*it)->getCenter()));
- }
- }
- }
-
- // save the clusters and non cluster
- saveClusters(clusterFile);
-
- // update all atoms using replacements
- cout << "-> please wait while replacing atoms in exclusive components (";
- update(pm->getExclusiveComponents());
- cout << "-> please wait while replacing atoms in informative components (";
- update(pm->getInformativeComponents());
-
- // Use new atoms instead of atoms
- cout << "-> please wait while changing atoms" << endl;
- pm->setAtoms(newAtoms, false); // do not delete old atom list!
-}
-
-
-/// class facet to old and compare facet
-class Facet {
-public:
- /// create a facet using size nodes and their indexes
- Facet(unsigned int size, unsigned int id[]);
-
- /// destructor
- virtual ~Facet();
-
- /// if it is the same (equivalent) facet, increment used (return true if equivalence)
- bool testEquivalence(unsigned int size, unsigned int id[]);
-
- /// return the corresponding PML cell
- Cell * getCell(PhysicalModel *) const;
-
- /// print on stdout
- void debug();
-
- /// get the number of time it is being used
- unsigned int getUsed() const;
-
-private:
- /// is this atom index present in this facet (no check on the order)
- bool isIn(unsigned int) const;
-
- /// the facet atom indexes
- unsigned int *id;
-
- /// nr of atoms composing the facet (3 = triangle, 4 = quad)
- unsigned int size;
-
- /// nr of times the facet is used
- unsigned int used;
-};
-
-
-// -------------------- constructor/destructor ------------------------
-Facet::Facet(unsigned int size, unsigned int id[]) {
- this->size = size;
- this->id = new unsigned int[size];
- for (unsigned int i=0; i<size; i++)
- this->id[i]=id[i];
- used = 1;
-}
-
-Facet::~Facet() {
- delete [] id;
-}
-
-// -------------------- debug ------------------------
-void Facet::debug() {
- switch (size) {
- case 3:
- cout << "triangle <";
- break;
- case 4:
- cout << "quad <";
- break;
- default:
- cout << "unknown facet <";
- break;
- }
- unsigned int i;
- for (i=0; i<size-1; i++)
- cout << id[i] << ",";
- cout << id[i] << "> used " << used << " times" << endl;
-}
-
-
-// -------------------- testEquivalence ------------------------
-bool Facet::testEquivalence(unsigned int size, unsigned int id[]) {
- if (this->size != size) {
- return false;
- } else {
- unsigned int i=0;
- while (i<size && isIn(id[i])) {
- i++;
- }
-
- if (i==size)
- used++;
-
- return (i==size);
- }
-}
-
-// -------------------- isIn ------------------------
-bool Facet::isIn(unsigned int index) const {
- unsigned int i=0;
- while (i<size && id[i]!=index)
- i++;
- return (i!=size);
-}
-
-// -------------------- getCell ------------------------
-Cell * Facet::getCell(PhysicalModel *pm) const {
- Cell *c;
- // create the correct geometric type cell
- switch (size) {
- case 3:
- c = new Cell(NULL, StructureProperties::TRIANGLE);
- break;
- case 4:
- c = new Cell(NULL, StructureProperties::QUAD);
- break;
- default:
- c=NULL;
- }
- // get the atom corresponding to the index stored in id
- // and insert them in the cell
- for (unsigned int i=0; i<size; i++) {
- Atom *a = pm->getAtom(id[i]);
- if (a==NULL) {
- cout << "Argh! Cannot find atom #" << id[i] << endl;
- } else {
- c->addStructureIfNotIn(a);
- }
- }
- return c;
-}
-
-// -------------------- getUsed ------------------------
-unsigned int Facet::getUsed() const {
- return used;
-}
-
-// -------------------- Neigborhood Map ------------------------
-// associative map of all the neighboors for a given index of an atom
-map<unsigned int, Cell*> neighMap;
-
-// -------------------- getIterator ------------------------
-// get the iterator on the correct atom index in the neighMap
-// if non existant create it
-map<unsigned int, Cell*>::iterator getIterator(unsigned int index) {
- map<unsigned int, Cell*>::iterator it;
-
- // find atom index in the map
- it = neighMap.find(index);
-
- // not present, insert a new cell, associated with index
- if (it==neighMap.end()) {
- // instanciate
- Cell *nc = new Cell(NULL, StructureProperties::POLY_VERTEX);
- // name
- stringstream n(std::stringstream::out);
- n << "Atom #" << index << '\0';
- ((Structure *)nc)->setName(n.str());
- // insert the new cell in the map
- pair<map<unsigned int, Cell*>::iterator, bool> ins = neighMap.insert(map<unsigned int, Cell*>::value_type(index, nc));
- // it show where it has been inserted
- it = ins.first;
- }
-
- return it;
-}
-
-// -------------------- generateNeighborhood ------------------------
-/// generate the neighborhoods
-StructuralComponent * generateNeighborhood(StructuralComponent *sc) {
- // an iterator
- map<unsigned int, Cell*>::iterator it;
-
- // for each cells recreate neighborhoods
- for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
- // c is an hexahedron
- Cell *c = sc->getCell(i);
-
- switch(c->getType()) {
- case StructureProperties::TRIANGLE:
- if (c->getNumberOfStructures()!=3) {
- cout << "cell #" << c->getIndex() << " of type TRIANGLE does not contains 3 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // TRIANGLE
- // 1 facet: lines:
- // / \ 0,1,2 0,1
- // / \ 1,2
- // 2-----0 2,0
-
- // -- add atom 0 neighbors
- // get neighbors list for atom 0
- it = getIterator(c->getStructure(0)->getIndex());
- // it.second is the cell containing all the atoms that are neighbors of atom 0
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
-
- // -- add atom 1 neighbors
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- // -- add atom 2 neighbors
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- }
- break;
- case StructureProperties::QUAD:
- if (c->getNumberOfStructures()!=4) {
- cout << "cell #" << c->getIndex() << " of type QUAD does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // QUAD
- // 3--------2 lines:
- // | | 0,1
- // | | 1,2
- // | | 2,3
- // 0--------1 3,0
-
- // -- add atom 0 neighbors
- // get neighbors list for atom 0
- it = getIterator(c->getStructure(0)->getIndex());
- // it.second is the cell containing all the atoms that are neighbors of atom 0
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
-
- // -- add atom 1 neighbors
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- // -- add atom 2 neighbors
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
-
- // -- add atom 3 neighbors
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- // complete neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- }
- break;
- case StructureProperties::WEDGE:
- if (c->getNumberOfStructures()!=6) {
- cout << "cell #" << c->getIndex() << " of type WEDGE does not contains 6 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // WEDGE
- // 1-------------4 facets (quad): facets (triangles): lines:
- // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
- // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
- // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
- // \ \ \ \ 0,3 5,3
- // \ 2-----------\--5 1,4
- it = getIterator(c->getStructure(0)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
-
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
-
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
-
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(0));
-
- it = getIterator(c->getStructure(4)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(1));
-
- it = getIterator(c->getStructure(5)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- }
- break;
-
- case StructureProperties::TETRAHEDRON:
- if (c->getNumberOfStructures()!=4) {
- cout << "cell #" << c->getIndex() << " of type TETRAHEDRON does not contains 4 atoms (found only " << c->getNumberOfStructures() << "). Cell skipped." << endl;
- } else {
- // tetrahedron are defined as follow:
- // 3 triangular base: 0,1,2
- // /| \ -
- // / | \ So to generate the neighborhodd,
- // 2__|___\1 we just have to loop on all the
- // \ | / atoms and add them their corresponding neigh
- // \ | / This is easy as in a tetrahedron all atoms
- // \|/ are neighbors to all atoms...
- // 0
- for (unsigned int j=0; j<4; j++) {
- // get current atom
- it = getIterator(c->getStructure(j)->getIndex());
- // add all others to its neighborhood
- (*it).second->addStructureIfNotIn(c->getStructure((j+1)%4));
- (*it).second->addStructureIfNotIn(c->getStructure((j+2)%4));
- (*it).second->addStructureIfNotIn(c->getStructure((j+3)%4));
- }
- }
- break;
-
- case StructureProperties::HEXAHEDRON:
- if (c->getNumberOfStructures()!=8) {
- cout << "cell #" << c->getIndex() << " of type HEXAHEDRON does not contains 8 atoms (found only " << c->getNumberOfStructures() << "). Cell skiped." << endl;
- } else {
- // hexahedron are defined as follow:
- // 2-------------6
- // / \ / \ So to generate the neighborhood,
- // / \ / \ we just have to loop on all the
- // 1-----\-------5 \ atoms and add them their corresponding neigh
- // \ 3-------------7
- // \ / \ /
- // \ / \ /
- // 0-------------4
-
- // atom 0 is neigbor of atoms : 1, 3, 4
- it = getIterator(c->getStructure(0)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
-
- // atom 1 is neigbor of atoms : 0, 2, 5
- it = getIterator(c->getStructure(1)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
-
- // atom 2 is neigbor of atoms : 1, 3, 6
- it = getIterator(c->getStructure(2)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
-
- // atom 3 is neigbor of atoms : 0, 2, 7
- it = getIterator(c->getStructure(3)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 4 is neigbor of atoms : 0, 5, 7
- it = getIterator(c->getStructure(4)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(0));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 5 is neigbor of atoms : 1, 4, 6
- it = getIterator(c->getStructure(5)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(1));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
-
- // atom 6 is neigbor of atoms : 2, 5, 7
- it = getIterator(c->getStructure(6)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(2));
- (*it).second->addStructureIfNotIn(c->getStructure(5));
- (*it).second->addStructureIfNotIn(c->getStructure(7));
-
- // atom 7 is neigbor of atoms : 3, 4, 6
- it = getIterator(c->getStructure(7)->getIndex());
- (*it).second->addStructureIfNotIn(c->getStructure(3));
- (*it).second->addStructureIfNotIn(c->getStructure(4));
- (*it).second->addStructureIfNotIn(c->getStructure(6));
- }
- break;
- default:
- cout << "Cannot generate neighborhood for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
- break;
- }
- }
-
- // now that we have in neighMap all the neighborhoods, just add them in a new SC
- StructuralComponent *neigh = new StructuralComponent(NULL, "Neighborhoods");
-
- for (it=neighMap.begin(); it!=neighMap.end(); it++) {
- neigh->addStructure((*it).second);
- }
-
- return neigh;
-}
-
-// -------------------- All border facets ------------------------
-/// storing all the facets
-vector <Facet *> allFacets;
-
-// -------------------- equivalent ------------------------
-// check if equivalent of already existing facet
-void equivalent(int size, unsigned int id[]) {
- vector <Facet *>::iterator it;
-
- // look into allFacets for equivalence
- it = allFacets.begin();
- while (it!=allFacets.end() && !(*it)->testEquivalence(size, id))
- it++;
-
- // not found => insert
- if (it==allFacets.end())
- allFacets.push_back(new Facet(size,id));
-}
-
-
-// -------------------- generateExternalSurface ------------------------
-/// generate the outside surface
-MultiComponent * generateExternalSurface(StructuralComponent *sc) {
- // outside/external facets are facets that are used in only one element
-
- // for each cells update the counter
- for (unsigned int i=0; i<sc->getNumberOfCells(); i++) {
- // c is an hexahedron
- Cell *c = sc->getCell(i);
-
- // Facets have to be described in anticlockwise (trigonometrywise) when
- // looking at them from outside
- switch(c->getType()) {
- case StructureProperties::TRIANGLE: {
- // TRIANGLE (as viewed from outside)
- // 1 facet: lines:
- // / \ 0,1,2 0,1
- // / \ 1,2
- // 2-----0 2,0
- unsigned idT[3];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(1)->getIndex();
- idT[2]=c->getStructure(2)->getIndex();
- equivalent(3,idT);
- break;
- }
- case StructureProperties::QUAD: {
- // QUAD
- // 3--------2 lines:
- // | | 0,1
- // | | 1,2
- // | | 2,3
- // 0--------1 3,0
-
- unsigned idT[4];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(1)->getIndex();
- idT[2]=c->getStructure(2)->getIndex();
- idT[3]=c->getStructure(3)->getIndex();
- equivalent(4,idT);
- break;
- }
- case StructureProperties::WEDGE: {
- // WEDGE
- // 1-------------4 facets (quad): facets (triangles): lines:
- // /\ . \ 2,5,4,1 0,2,1 0,1 2,5
- // / \ / \ 0,1,4,3 3,4,5 0,2 3,4
- // 0- - \ - - - 3 \ 2,0,3,5 1,2 4,5
- // \ \ \ \ 0,3 5,3
- // \ 2-----------\--5 1,4
- unsigned int idQ[4];
- idQ[0]=c->getStructure(2)->getIndex();
- idQ[1]=c->getStructure(5)->getIndex();
- idQ[2]=c->getStructure(4)->getIndex();
- idQ[3]=c->getStructure(1)->getIndex();
- equivalent(4,idQ);
-
- idQ[0]=c->getStructure(0)->getIndex();
- idQ[1]=c->getStructure(1)->getIndex();
- idQ[2]=c->getStructure(4)->getIndex();
- idQ[3]=c->getStructure(3)->getIndex();
- equivalent(4,idQ);
-
- idQ[0]=c->getStructure(2)->getIndex();
- idQ[1]=c->getStructure(0)->getIndex();
- idQ[2]=c->getStructure(3)->getIndex();
- idQ[3]=c->getStructure(5)->getIndex();
- equivalent(4,idQ);
-
- unsigned int idT[3];
- idT[0]=c->getStructure(0)->getIndex();
- idT[1]=c->getStructure(2)->getIndex();
- idT[2]=c->getStructure(1)->getIndex();
- equivalent(3,idT);
-
- idT[0]=c->getStructure(3)->getIndex();
- idT[1]=c->getStructure(4)->getIndex();
- idT[2]=c->getStructure(5)->getIndex();
- equivalent(3,idT);
- break;
- }
- case StructureProperties::TETRAHEDRON: {
- // tetrahedron are defined as follow:
- // 3
- // /| \ So to generate the facet list,
- // / | \ we just have to loop on all the
- // 1__|___\ 2 tetrahedron and add the corresponding 4 facets :
- // \ | / f0=0,1,2 f2=0,3,1
- // \ | / f1=0,2,3 f3=2,1,3
- // \|/
- // 0
- unsigned int id[3];
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(2)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(2)->getIndex();
- id[2]=c->getStructure(3)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(3)->getIndex();
- id[2]=c->getStructure(1)->getIndex();
- equivalent(3,id);
-
- id[0]=c->getStructure(2)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(3)->getIndex();
- equivalent(3,id);
- break;
- }
-
- case StructureProperties::HEXAHEDRON: {
- // hexahedron are defined as follow:
- // 2-------------6
- // / \ . \ So to generate the facet list,
- // / \ / \ we just have to loop on all the
- // 1- - -\ - - - 5 \ hexahedron and add the corresponding 6 facets :
- // \ 3-------------7 f0=0,3,2,1 f3=3,7,6,2
- // \ / \ / f1=0,4,7,3 f4=1,2,6,5
- // \ / . / f2=0,1,5,4 f5=4,5,6,7
- // 0-------------4
-
- unsigned int id[4];
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(3)->getIndex();
- id[2]=c->getStructure(2)->getIndex();
- id[3]=c->getStructure(1)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(4)->getIndex();
- id[2]=c->getStructure(7)->getIndex();
- id[3]=c->getStructure(3)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(0)->getIndex();
- id[1]=c->getStructure(1)->getIndex();
- id[2]=c->getStructure(5)->getIndex();
- id[3]=c->getStructure(4)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(3)->getIndex();
- id[1]=c->getStructure(7)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(2)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(1)->getIndex();
- id[1]=c->getStructure(2)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(5)->getIndex();
- equivalent(4,id);
-
- id[0]=c->getStructure(4)->getIndex();
- id[1]=c->getStructure(5)->getIndex();
- id[2]=c->getStructure(6)->getIndex();
- id[3]=c->getStructure(7)->getIndex();
- equivalent(4,id);
- break;
- }
- default:
- cout << "Cannot generate sub facets for cell #" << c->getIndex() << ": it is not of known type (TRIANGLE, QUAD, WEDGE, HEXAHEDRON or TETRAHEDRON)." << endl;
- break;
- }
- }
-
- // now that we have in facetMap all the facet and the number of times they have been used
- // just add in a new SC all the one that are used only once
- StructuralComponent *facet = new StructuralComponent(NULL, "extern");
-
- for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++) {
- //(*it)->debug();
- if ((*it)->getUsed()==1) // used only once
- facet->addStructure((*it)->getCell(sc->getPhysicalModel()));
- }
-
- // delete all facets
- for (vector <Facet *>::iterator it=allFacets.begin(); it!=allFacets.end(); it++)
- delete (*it);
-
- // add incompressibility constraint parameter
- facet->getProperties()->set("incompressibility", true);
-
- // create the enclosed volume
- MultiComponent *mc = new MultiComponent(NULL, "Enclosed Volumes");
- mc->addSubComponent(facet);
-
- // return the SC
- return mc;
-}
-
-
-
-// -------------------- vtk2pml ------------------------
-string vtk2pml(string filename) {
- // create output file name
- string outFilename = filename;
-
- unsigned int pLast = outFilename.rfind ( "." );
- if ( pLast != string::npos ) {
- outFilename.erase ( pLast );
- }
- outFilename += "0.pml";
-
- // read the vtk file
- vtkFile.open ( filename.c_str() );
-
- if ( !vtkFile ) {
- cerr << "Error: Can't open the file named " << filename << endl;
- exit ( 1 );
- }
-
- ofstream outputFile ( outFilename.c_str() );
-
- cout << "Transforming vtk to pml..." << endl;
- outputFile << "<!-- Created by vtk2pml (c) E Promayon, TIMC (c) 2009 -->" << endl;
-
- outputFile << "<physicalModel name=\"from vtk\" >" << endl;
-
- // atoms
- // looking for "POINTS n float"
- unsigned int nAtoms = getCountFromDirective ( "POINTS" );
- //cout << "Found " << nAtoms << " atoms." << endl;
-
- outputFile << "<atoms>" << endl;
-
- outputFile << "<structuralComponent name=\"vertices\">" << endl;
-
- double x, y, z;
-
- for ( unsigned int i=1; i<=nAtoms; i++ ) {
- // read position
- vtkFile >> x;
- vtkFile >> y;
- vtkFile >> z;
- // write atom
- outputFile << "<atom>" << endl;
- // indexes start at 0
- outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
- outputFile << "</atom>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;
-
- outputFile << "</atoms>" << endl;
-
- cout << "-> created " << nAtoms << " atoms" << endl;
-
- // regions
- outputFile << "<exclusiveComponents>" << endl;
- outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
- outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"1\" />" << endl;
- outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
-
- for ( unsigned int i=1; i<=nAtoms; i++ )
- outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
-
- outputFile << "</cell>" << endl;
-
- outputFile << "</structuralComponent>" << endl;
-
- cout << "-> created region" << endl;
-
-// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
- unsigned int nPolygons = getCountFromDirective ( "POLYGONS" );
-
- outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
-
- outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- cout << "-> creating polygons (nb of polygons to read=" << nPolygons << ")" << endl;
-
- int id;
- int nPoints;
-
- for ( unsigned int i=0; i<nPolygons; i++ ) {
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties type=\"";
- vtkFile >> nPoints;
-
- switch (nPoints) {
- case 3:
- default:
- outputFile << "TRIANGLE\" />" << endl;
- break;
- }
-
- for ( unsigned int j=0; j<nPoints; j++ ) {
- vtkFile >> id;
- outputFile << "<atomRef index=\"" << id << "\" />" << endl;
- }
-
- /* // discard the next "offset" number of integer
- for ( unsigned int j=0; j<offset; j++ )
- vtkFile >> id;
- */
- outputFile << "</cell>" << endl;
- }
-
- cout << "...finished (" << nPolygons << " polygons created)" << endl;
-
- cout << "Results in " << outFilename << endl;
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</multiComponent>" << endl;
- outputFile << "</exclusiveComponents>" << endl;
- outputFile << "</physicalModel>" <<endl;
-
- outputFile.close();
-
- return outFilename;
-}
-
-
-// -------------------- optimizeMesh ------------------------
-string optimizeMesh(string filename, double precision) {
- try {
- // read the pml
- cout << "-> please wait while opening " << filename << " for optimizing precision " << precision << endl;
- pm = new PhysicalModel(filename.c_str());
-
- cout << "-> please wait while optimizing " << pm->getNumberOfAtoms() << " atoms..." << endl;
-
- optimize(filename);
-
- // save the result
- stringstream clusterOSS;
- clusterOSS << precision;
- unsigned int pLast = filename.rfind(".")-1;
- if (pLast != string::npos) {
- filename.erase(pLast);
- }
- filename += "1.pml";
-
- cout << "-> please wait while saving " << filename << " (" << nrOfNewAtoms << " new atoms)" << endl;
-
- ofstream outputFile(filename.c_str());
- pm->setName(pm->getName()+" optimized for "+clusterOSS.str());
- // do not optimize output (do not touch cell and atom id)
- pm->xmlPrint(outputFile, false);
- outputFile.close();
-
- delete pm;
-
- return filename;
-
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-
- return "";
-
-}
-
-// -------------------- elementsToNeighborhood ------------------------
-string elementsToNeighborhood(string filename) {
-
- try {
- // read the pml
- cout << "-> please wait while reading " << filename << " for adding neighborhood/enclosed volumes" << endl;
- PhysicalModel pm(filename.c_str());
-
- // find the structural component "Elements" in the exclusive components
- Component * c = pm.getComponentByName("Elements");
- if (!c) {
- throw PMLAbortException("Cannot find any component named \"Elements\"");
- }
-
- // check if it is a correct one
- if (!c->isExclusive() || !c->isInstanceOf("StructuralComponent")) {
- throw PMLAbortException("Cannot translate the \"Elements\" component: not exclusive or not a structural component.");
- }
-
- // check if c is made of hexahedron
- StructuralComponent *sc = (StructuralComponent *) c;
- if (sc->composedBy()!=StructuralComponent::CELLS || sc->getNumberOfStructures()==0 || (sc->getCell(0)->getType()!=StructureProperties::HEXAHEDRON &&
- sc->getCell(0)->getType()!=StructureProperties::TETRAHEDRON &&
- sc->getCell(0)->getType()!=StructureProperties::WEDGE &&
- sc->getCell(0)->getType()!=StructureProperties::TRIANGLE &&
- sc->getCell(0)->getType()!=StructureProperties::QUAD)) {
- throw PMLAbortException("Cannot translate the \"Elements\" component: does not contains any cell geometric type HEXAHEDRON, WEDGE, TRIANGLE, QUAD or TETRAHEDRON. Exiting");
- }
-
- // now, we have the right component, let's do some work...
- cout << "-> please wait while generating neighborhood" << endl;
- StructuralComponent * neighborhoods = generateNeighborhood(sc);
- cout << "-> please wait while generating external surface" << endl;
- MultiComponent * polyhedrons = generateExternalSurface(sc);
-
- // add the new SC to the informative component
- if (neighborhoods)
- pm.getExclusiveComponents()->addSubComponent(neighborhoods);
- if (polyhedrons)
- pm.getExclusiveComponents()->addSubComponent(polyhedrons);
-
- // save the result
- unsigned int pLast = filename.rfind(".") - 1;
- if (pLast != string::npos) {
- filename.erase(pLast);
- }
- filename += ".pml";
-
- cout << "-> please wait while saving result in " << filename << endl;
-
- ofstream outputFile(filename.c_str());
- pm.setName(pm.getName()+" neighborhoods");
- // do not change cell and atom id
- pm.xmlPrint(outputFile,false);
-
- return filename;
-
- } catch(PMLAbortException ae) {
- cout << "AbortException: Physical model aborted:" << endl ;
- cout << ae.what() << endl;
- }
-
- return "";
-}
-
-int main ( int argc, char ** argv ) {
-
- if (argc!=3) {
- cout << "Usage:" << endl;
- cout << "\t" << argv[0] << " file.vtk precision" << endl;
- cout << "output to: file.pml" << endl;
- cout << "precision is a float (each cluster of points included in a sphere of radius precisious will be merged)" << endl;
- cout << "PML " << PhysicalModel::VERSION << endl;
- exit(-1);
- }
-
- // get the vtk filename
- string filename ( argv[1] );
- precision = atof(argv[2]);
-
- string pml = vtk2pml(filename);
-
- string optimizedPml = optimizeMesh(pml, precision);
-
- string modelPml = elementsToNeighborhood(optimizedPml);
-
- cout << endl;
- cout << "Finished. Results is in " << modelPml << endl;
-}
diff --git a/modeling/libraries/pml/tools/vtk2pml/vtk2pml.cpp b/modeling/libraries/pml/tools/vtk2pml/vtk2pml.cpp
deleted file mode 100644
index 74e33ce..0000000
--- a/modeling/libraries/pml/tools/vtk2pml/vtk2pml.cpp
+++ /dev/null
@@ -1,237 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-//
-// C++ Implementation: vtk2pml
-//
-// Description: very simple vtk unstructured grid export to pml
-// Note: this transformation is done manually, without the help of the VTK API
-// Pros: no dependencies
-// Cons: lots of things/case/vtk types not take into account, very simple transformation
-//
-// the first argument is the name of a vtk file
-
-#include <iostream>
-#include <string>
-#include <fstream>
-#include <cstdlib>
-#include <sstream>
-
-using namespace std;
-
-// the input .obj file
-std::ifstream vtkFile;
-unsigned lineNr;
-bool eof;
-
-typedef struct {
- string directive;
- string data;
- bool ok;
-} ObjLine;
-
-ObjLine currentLine;
-
-// -------------------- getNext ------------------------
-// get the next current line
-void getNext() {
- char l[200];
- string line;
- currentLine.ok = false;
-
- while ( !eof && !currentLine.ok ) {
- eof = ! ( vtkFile.getline ( l,199 ) );
- lineNr++;
-
- if ( l[0]!='#' ) {
- line = l;
-
- unsigned int space = line.find ( ' ' );
-
- if ( space != string::npos && space != 0 ) {
- currentLine.directive = line.substr ( 0,space );
- currentLine.data = line.substr ( space+1 );
- currentLine.ok = true;
- }
- }
- }
-
-}
-
-
-// -------------------- getCountFromDirective ------------------------
-int getCountFromDirective ( string directive ) {
- // go to the first directive
- while ( !eof && currentLine.directive!=directive ) {
-// cout << "l=" << currentLine.directive << endl;
- getNext();
- }
-
- if ( !eof )
- return atoi ( currentLine.data.c_str() );
- else
- return 0;
-}
-
-
-// -------------------- getVector ------------------------
-// get the double 3D vector in the current data
-void getVector ( double d[3] ) {
- stringstream data ( currentLine.data, std::stringstream::in );
-
- for ( unsigned int i=0; i<3; i++ )
- data >> d[i];
-}
-
-int main ( int argc, char ** argv ) {
-
- if ( argc!=2 ) {
- cout << "usage: " << argv[0] << endl;
- cout << "\t" << argv[0] << " file.vtk" << endl;
- exit ( -1 );
- }
-
- // get the vtk filename
- string filename ( argv[1] );
-
- // create output file name
- string outFilename = filename;
-
- unsigned int pLast = outFilename.rfind ( "." );
-
- if ( pLast != string::npos ) {
- outFilename.erase ( pLast );
- outFilename += ".pml";
- } else
- outFilename += "-pml";
-
- // read the vtk file
- vtkFile.open ( filename.c_str() );
-
- if ( !vtkFile ) {
- cerr << "Error: Can't open the file named " << filename << endl;
- exit ( 1 );
- }
-
- ofstream outputFile ( outFilename.c_str() );
-
- cout << "Transforming vtk to pml..." << endl;
- outputFile << "<!-- Created by vtk2pml (c) E Promayon, TIMC (c) 2009 -->" << endl;
-
- outputFile << "<physicalModel name=\"from vtk\" >" << endl;
-
- // atoms
- // looking for "POINTS n float"
- unsigned int nAtoms = getCountFromDirective ( "POINTS" );
- //cout << "Found " << nAtoms << " atoms." << endl;
-
- outputFile << "<atoms>" << endl;
-
- outputFile << "<structuralComponent name=\"vertices\">" << endl;
-
- double x, y, z;
-
- for ( unsigned int i=1; i<=nAtoms; i++ ) {
- // read position
- vtkFile >> x;
- vtkFile >> y;
- vtkFile >> z;
- // write atom
- outputFile << "<atom>" << endl;
- // indexes start at 0
- outputFile << "<atomProperties index=\"" << i-1 << "\" x=\"" << x << "\" y=\"" << y << "\" z=\"" << z << "\" />" << endl;
- outputFile << "</atom>" << endl;
- }
-
- outputFile << "</structuralComponent>" << endl;
-
- outputFile << "</atoms>" << endl;
-
- cout << "-> created " << nAtoms << " atoms" << endl;
-
- // regions
- outputFile << "<exclusiveComponents>" << endl;
- outputFile << "<multiComponent name=\"Exclusive Components\">" << endl;
- outputFile << "<structuralComponent name=\"Regions\" mass=\"1\" viscosityW=\"1\" >" << endl;
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties name=\"cell\" mode=\"NONE\" type=\"POLY_VERTEX\" materialType=\"elastic\" shapeW=\"300\" masterRegion=\"1\" incompressibility=\"0\" />" << endl;
- outputFile << "<color r=\"0.8\" g=\"0.8\" b=\"0.2\" a=\"1.0\" />" << endl;
-
- for ( unsigned int i=1; i<=nAtoms; i++ )
- outputFile << "<atomRef index=\"" << i-1 << "\"/>" << endl;
-
- outputFile << "</cell>" << endl;
-
- outputFile << "</structuralComponent>" << endl;
-
- cout << "-> created region" << endl;
-
-// tetrahedra => elements (we can then convert the elements to neighborhood using the corresponding physicalmodel lib tool)
- unsigned int nPolygons = getCountFromDirective ( "POLYGONS" );
-
- outputFile << "<structuralComponent name=\"Elements\" mode=\"WIREFRAME_AND_SURFACE\" >" << endl;
-
- outputFile << "<color r=\".95\" g=\"0.89\" b=\"0.63\" a=\"1.0\"/>" << endl;
-
- cout << "-> creating polygons (nb of polygons to read=" << nPolygons << ")" << endl;
-
- int id;
- int nPoints;
-
- for ( unsigned int i=0; i<nPolygons; i++ ) {
- outputFile << "<cell>" << endl;
- outputFile << "<cellProperties type=\"";
- vtkFile >> nPoints;
-
- switch (nPoints) {
- case 3:
- default:
- outputFile << "TRIANGLE\" />" << endl;
- break;
- }
-
- for ( unsigned int j=0; j<nPoints; j++ ) {
- vtkFile >> id;
- outputFile << "<atomRef index=\"" << id << "\" />" << endl;
- }
-
- /* // discard the next "offset" number of integer
- for ( unsigned int j=0; j<offset; j++ )
- vtkFile >> id;
- */
- outputFile << "</cell>" << endl;
- }
-
- cout << "...finished (" << nPolygons << " polygons created)" << endl;
-
- cout << "Results in " << outFilename << endl;
-
- outputFile << "</structuralComponent>" << endl;
- outputFile << "</multiComponent>" << endl;
- outputFile << "</exclusiveComponents>" << endl;
- outputFile << "</physicalModel>" <<endl;
-
- outputFile.close();
-
-}
diff --git a/modeling/libraries/pml/xsl/x3d/x3d2pml.xsl b/modeling/libraries/pml/xsl/x3d/x3d2pml.xsl
deleted file mode 100644
index a8b7358..0000000
--- a/modeling/libraries/pml/xsl/x3d/x3d2pml.xsl
+++ /dev/null
@@ -1,198 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" ?>
-
-<!--
- Document : x3d2pml.xsl
- Created on : 22 October 2004, 11:00
- Author : emmanuel promayon
- Description:
- Convert a simple X3D file ("nterchange" profile) to PML
-
- v 0.1, 22 Oct 2004
- - Supports only IndexedFacetSet
- - only works for one instance of <Shape>
- - only works for triangle and quand facets
-
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
--->
-
-<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
- xmlns:x3d='http://www.web3d.org/specifications/x3d-3.0.xsd'
- xmlns:str="http://exslt.org/strings"
- id="xsl2pml 0.1">
-<!-- xmlns:date="http://exslt.org/dates-and-times"
- xmlns:common="http://exslt.org/common">//-->
-
- <xsl:output method="xml" indent="yes" encoding="UTF-8"/>
-
- <!-- top level -->
- <xsl:template match="/X3D">
-
- <xsl:element name="physicalModel">
-
- <xsl:attribute name="name">converted from X3D</xsl:attribute>
-
- <!-- only convert the first Shape -->
- <xsl:apply-templates select="//Shape[1]"/>
-
- </xsl:element>
-
- </xsl:template>
-
- <!-- Shape level -->
- <xsl:template match="Shape">
-
- <!-- get color and transparencies -->
- <xsl:variable name="rgb">
- <xsl:choose>
- <xsl:when test="count(Appearance/Material/@diffuseColor) > 0">
- <xsl:value-of select="Appearance/Material/@diffuseColor"/>
- </xsl:when>
- <xsl:otherwise>0.5 0.5 0.5</xsl:otherwise>
- </xsl:choose>
- </xsl:variable>
- <xsl:variable name="alpha">
- <xsl:choose>
- <!-- transparency is the inverse of alpha chanel -->
- <xsl:when test="count(Appearance/Material/@transparency) > 0">
- <xsl:value-of select="1.0 - Appearance/Material/@transparency"/>
- </xsl:when>
- <xsl:otherwise>1.0</xsl:otherwise>
- </xsl:choose>
- </xsl:variable>
-
-
- <!-- create atom list from the Coordinate @point -->
- <xsl:apply-templates select="IndexedFaceSet/Coordinate"/>
-
- <!-- create the list of facets, i.e cells -->
- <exclusiveComponents>
- <multiComponent name="Exclusive components">
- <!-- call the templates with specified colors -->
- <xsl:apply-templates select="IndexedFaceSet">
- <xsl:with-param name="rgb" select="$rgb"/>
- <xsl:with-param name="alpha" select="$alpha"/>
- </xsl:apply-templates>
- </multiComponent>
- </exclusiveComponents>
- </xsl:template>
-
- <!-- Coordinate level -->
- <xsl:template match="Coordinate">
- <atoms>
- <structuralComponent name="element list">
-
- <!-- split the point attribute value to coordinates triplets -->
- <xsl:for-each select="str:split(@point, ', ')">
-
- <!-- here the value of . is " xi yi zi" (with any number of space separating the values) -->
-
- <!-- xCoord is the first token when separating using space, yCoord the second and zCoord the last one -->
- <xsl:variable name="xCoord" select="str:split(.,' ')[1]"/>
- <xsl:variable name="yCoord" select="str:split(.,' ')[2]"/>
- <xsl:variable name="zCoord" select="str:split(.,' ')[3]"/>
-
- <!-- for each triplet output a new atom and its position -->
- <atom>
- <xsl:element name="atomProperties">
- <xsl:attribute name="index">
- <xsl:copy-of select="position()-1"/> <!-- index starts at 0 -->
- </xsl:attribute>
- <xsl:attribute name="x">
- <xsl:copy-of select="$xCoord"/>
- </xsl:attribute>
- <xsl:attribute name="y">
- <xsl:copy-of select="$yCoord"/>
- </xsl:attribute>
- <xsl:attribute name="z">
- <xsl:copy-of select="$zCoord"/>
- </xsl:attribute>
- </xsl:element>
- </atom>
-
- </xsl:for-each>
-
- </structuralComponent>
- </atoms>
-
- </xsl:template>
-
- <xsl:template match="IndexedFaceSet">
- <xsl:param name="rgb"/>
- <xsl:param name="alpha"/>
-
- <structuralComponent name="IndexedFaceSet" mode="WIREFRAME_AND_SURFACE">
-
- <xsl:element name="color">
- <xsl:attribute name="r">
- <xsl:value-of select="$rgb"/>
- </xsl:attribute>
- <xsl:attribute name="a">
- <xsl:value-of select="$alpha"/>
- </xsl:attribute>
- </xsl:element>
-
- <!-- split the coordIndex to get each facet index -->
- <xsl:for-each select="str:split(@coordIndex, '-1')">
- <!-- a facet is a pml cell
- Here the value of . is " v1 v2 ... vn"
- -->
- <!-- compute nr of vertices -->
- <xsl:variable name="nbOfVertices" select="count(str:split(.,' '))"/>
-
- <!-- do not create any cell if the list of vertices is empty! -->
- <xsl:if test="$nbOfVertices > 0">
- <cell>
- <xsl:element name="cellProperties">
- <xsl:attribute name="type">
-
- <xsl:choose>
- <xsl:when test="$nbOfVertices = 3">TRIANGLE</xsl:when>
- <xsl:when test="$nbOfVertices = 4">QUAD</xsl:when>
- <xsl:otherwise>POLY_VERTEX</xsl:otherwise>
- </xsl:choose>
- </xsl:attribute>
- </xsl:element>
-
- <!-- the atom index -->
- <xsl:for-each select="str:split(.,' ')">
- <!-- here . is the index of the atom -->
- <xsl:element name="atomRef">
- <xsl:attribute name="index">
- <xsl:value-of select="."/>
- </xsl:attribute>
- </xsl:element>
- </xsl:for-each>
-
- </cell>
- </xsl:if>
- </xsl:for-each>
-
- </structuralComponent>
-
- </xsl:template>
-
-</xsl:stylesheet>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/Atom.xsd b/modeling/libraries/pmlschema/Atom.xsd
new file mode 100644
index 0000000..55d7f1a
--- /dev/null
+++ b/modeling/libraries/pmlschema/Atom.xsd
@@ -0,0 +1,26 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="AtomProperties.xsd"/>
+
+ <xsd:complexType name="Atom">
+ <xsd:annotation>
+ <xsd:documentation>
+ Any complex 3D model has to use specified 3D positions,
+ referred to in PML as atoms.
+ An atom is defined by a position (i.e. 3D coordinates) and some properties.
+
+ Note that atoms have to be described independently from any structure that uses
+ them.
+ Such a structure have to use references to the atoms id.
+ For example in a FEM mesh, the elements that are defined by a given list of atoms
+ will use reference to those atoms id, which will all be described separately.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="atomProperties" type="AtomProperties"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/AtomProperties.xsd b/modeling/libraries/pmlschema/AtomProperties.xsd
new file mode 100644
index 0000000..23152d5
--- /dev/null
+++ b/modeling/libraries/pmlschema/AtomProperties.xsd
@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:complexType name="AtomProperties">
+ <xsd:annotation>
+ <xsd:documentation>
+ Default property is a unique index and the position.
+ You can add properties, for example, a mass property could be its mass,
+ expressed in grams, can be assigned to an atom.
+ Custom atom properties are optional, e.g. in the FEM, there will be no specific
+ atom properties.
+
+ Derived this complex type to add your own custom properties.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
+ <xsd:attribute name="x" type="xsd:double" use="required"/>
+ <xsd:attribute name="y" type="xsd:double" use="required"/>
+ <xsd:attribute name="z" type="xsd:double" use="required"/>
+ <xsd:attribute name="name" type="xsd:string" use="optional"/>
+ <!-- adding any kind of attributes -->
+ <xsd:anyAttribute namespace="##any" processContents="lax"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/AtomRef.xsd b/modeling/libraries/pmlschema/AtomRef.xsd
new file mode 100644
index 0000000..2005cf2
--- /dev/null
+++ b/modeling/libraries/pmlschema/AtomRef.xsd
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:complexType name="AtomRef">
+ <xsd:annotation>
+ <xsd:documentation>
+ Must be empty
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="index" type="xsd:nonNegativeInteger" use="required"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/Atoms.xsd b/modeling/libraries/pmlschema/Atoms.xsd
new file mode 100644
index 0000000..79d690b
--- /dev/null
+++ b/modeling/libraries/pmlschema/Atoms.xsd
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="StructuralComponent.xsd"/>
+
+ <xsd:complexType name="Atoms">
+ <xsd:annotation>
+ <xsd:documentation>
+ List of all the atoms. This is the only place where atoms are described.
+ In the remaining of the documents, references to this atoms will have to
+ be used.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:group ref="StructuralComponent"/>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/BasicStructuralComponent.xsd b/modeling/libraries/pmlschema/BasicStructuralComponent.xsd
new file mode 100644
index 0000000..cc835df
--- /dev/null
+++ b/modeling/libraries/pmlschema/BasicStructuralComponent.xsd
@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="NrOfStructures.xsd"/>
+ <xsd:include schemaLocation="RenderingMode.xsd"/>
+ <xsd:include schemaLocation="Color.xsd"/>
+ <xsd:include schemaLocation="Atom.xsd"/>
+ <xsd:include schemaLocation="Cell.xsd"/>
+
+ <xsd:complexType name="StructuralComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ A structural component is a group of structures.
+ It is generally composed of cells, although it can be composed of atoms.
+ Note that a cell can also be considered as a structural component as it is
+ defined by a set of atoms.
+ nrOfStructures is optional and is used for optimization.
+ Attribute mode indicates what is the default 3D graphic representation.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="color" type="Color" minOccurs="0"/>
+ <xsd:element name="nrOfStructures" type="NrOfStructures" minOccurs="0"/>
+ <xsd:choice>
+ <xsd:element name="atom" type="Atom" minOccurs="0" maxOccurs="unbounded"/>
+ <xsd:element name="cell" type="Cell" minOccurs="0" maxOccurs="unbounded"/>
+ <xsd:element name="atomRef" type="AtomRef" minOccurs="0" maxOccurs="unbounded"/>
+ </xsd:choice>
+ </xsd:sequence>
+ <xsd:attribute name="name" type="xsd:string"/>
+ <xsd:attribute name="mode" type="RenderingMode"/>
+ <!-- adding any kind of attributes -->
+ <xsd:anyAttribute namespace="##any" processContents="lax"/>
+ </xsd:complexType>
+
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/CMakeLists.txt b/modeling/libraries/pmlschema/CMakeLists.txt
new file mode 100644
index 0000000..2e9d715
--- /dev/null
+++ b/modeling/libraries/pmlschema/CMakeLists.txt
@@ -0,0 +1,33 @@
+# XSD really needed
+find_package(XSD REQUIRED)
+
+# Create lib files from xsd
+file (GLOB_RECURSE XSD_INPUT_FILES *.xsd)
+
+# generates headers from scratch
+set (XSD_H)
+set (XSD_SRCS)
+
+if (XSD_COMMAND)
+ set(XSD_COMMAND xsdcxx CACHE STRING "Name of the XSD code synthesis compiler")
+ # generates headers from scratch
+ foreach(xsdFile ${XSD_INPUT_FILES})
+ get_filename_component(xsdFileName ${xsdFile} NAME_WE)
+ add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
+ COMMAND ${XSD_COMMAND}
+ ARGS cxx-tree --generate-polymorphic --generate-serialization --namespace-map =physicalModel --generate-wildcard ${xsdFile}
+ DEPENDS ${xsdFile})
+ set(XSD_H ${XSD_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
+ set(XSD_SRCS ${XSD_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
+ endforeach()
+else()
+ message(FATAL_ERROR "Cannot find xsd or xsdcxx command: please install XSD / check xsd or xsdcxx binary is in your sytem PATH.")
+endif()
+
+camitk_library(STATIC
+ SOURCES ${XSD_H} ${XSD_SRCS}
+ NEEDS_XSD
+ HEADERS_TO_INSTALL ${XSD_H}
+ CEP_NAME CEP_MODELING
+ DESCRIPTION "Data description of PML: Physical Markeup Language."
+)
diff --git a/modeling/libraries/pmlschema/Cell.xsd b/modeling/libraries/pmlschema/Cell.xsd
new file mode 100644
index 0000000..91307eb
--- /dev/null
+++ b/modeling/libraries/pmlschema/Cell.xsd
@@ -0,0 +1,31 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="CellProperties.xsd"/>
+ <xsd:include schemaLocation="Color.xsd"/>
+ <xsd:include schemaLocation="NrOfStructures.xsd"/>
+ <xsd:include schemaLocation="AtomRef.xsd"/>
+
+ <xsd:complexType name="Cell">
+ <xsd:annotation>
+ <xsd:documentation>
+ Models are usually composed by collections of cells, each cell being built with atoms.
+ Cells represent geometrical polyhedron structures (triangles, hexahedrons, ...)
+ present in 3D models.
+
+ A cell is defined by:
+ - a geometric type: triangle, quad, tetrahedra, hexahedron, line, poly-line, etc...;
+ - a group of atoms used in the cell geometry; and
+ - some associated properties.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="cellProperties" type="CellProperties"/>
+ <xsd:element name="color" type="Color" minOccurs="0"/>
+ <xsd:element name="nrOfStructures" type="NrOfStructures" minOccurs="0"/>
+ <xsd:element name="atomRef" type="AtomRef" minOccurs="1" maxOccurs="unbounded"/>
+ </xsd:sequence>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/CellProperties.xsd b/modeling/libraries/pmlschema/CellProperties.xsd
new file mode 100644
index 0000000..3d5ea71
--- /dev/null
+++ b/modeling/libraries/pmlschema/CellProperties.xsd
@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="GeometricType.xsd"/>
+
+ <xsd:complexType name="CellProperties">
+ <xsd:annotation>
+ <xsd:documentation>
+ While they can be related to visualization, cell properties are mostly used to describe
+ specific physical properties of an approach.
+ For example, in a MSN, stiffness can be assigned to a cell representing a spring, or
+ in the FEM mesh, a rheological property, such as the Young modulus, can be defined for
+ a cell representing an finite element.
+
+ Derived this complex type to add your own custom properties.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="index" type="xsd:int"/>
+ <xsd:attribute name="type" type="GeometricType" use="required"/>
+ <xsd:attribute name="name" type="xsd:string"/>
+ <!-- adding any kind of attributes -->
+ <xsd:anyAttribute namespace="##any" processContents="lax"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/Color.xsd b/modeling/libraries/pmlschema/Color.xsd
new file mode 100644
index 0000000..1f61663
--- /dev/null
+++ b/modeling/libraries/pmlschema/Color.xsd
@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="ColorComponent.xsd"/>
+
+ <xsd:complexType name="Color">
+ <xsd:annotation>
+ <xsd:documentation>
+ A color is an empty element with the description of the four color
+ components (r for red, g for green, b for blue and a for alpha channel)
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="r" type="ColorComponent" use="required"/>
+ <xsd:attribute name="g" type="ColorComponent" use="required"/>
+ <xsd:attribute name="b" type="ColorComponent" use="required"/>
+ <xsd:attribute name="a" type="ColorComponent" use="required"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/ColorComponent.xsd b/modeling/libraries/pmlschema/ColorComponent.xsd
new file mode 100644
index 0000000..6b8793f
--- /dev/null
+++ b/modeling/libraries/pmlschema/ColorComponent.xsd
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:simpleType name="ColorComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ A color component is a double value between 0.0 and 1.0
+ 0.0 = component is not added to the global color
+ 1.0 = full addition of the color
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:restriction base="xsd:double">
+ <xsd:minInclusive value="0.0"/>
+ <xsd:maxInclusive value="1.0"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/ExclusiveComponent.xsd b/modeling/libraries/pmlschema/ExclusiveComponent.xsd
new file mode 100644
index 0000000..b3497c9
--- /dev/null
+++ b/modeling/libraries/pmlschema/ExclusiveComponent.xsd
@@ -0,0 +1,22 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="MultiComponent.xsd"/>
+
+ <xsd:complexType name="ExclusiveComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ Cells defined here are defined once and only once in this component.
+ No overlapping is possible here.
+ This special multi-component must contain all the cells that are really
+ necessary to the definition of a model, and only those cells.
+ This is the core structure of the physical model.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:group ref="MultiComponent"/>
+ </xsd:complexType>
+
+
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/GeometricType.xsd b/modeling/libraries/pmlschema/GeometricType.xsd
new file mode 100644
index 0000000..0544e27
--- /dev/null
+++ b/modeling/libraries/pmlschema/GeometricType.xsd
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:simpleType name="GeometricType">
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="INVALID"/>
+ <xsd:enumeration value="ATOM"/>
+ <xsd:enumeration value="LINE"/>
+ <xsd:enumeration value="TRIANGLE"/>
+ <xsd:enumeration value="QUAD"/>
+ <xsd:enumeration value="TETRAHEDRON"/>
+ <xsd:enumeration value="WEDGE"/>
+ <xsd:enumeration value="PYRAMID"/>
+ <xsd:enumeration value="HEXAHEDRON"/>
+ <xsd:enumeration value="POLY_LINE"/>
+ <xsd:enumeration value="POLY_VERTEX"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/InformativeComponent.xsd b/modeling/libraries/pmlschema/InformativeComponent.xsd
new file mode 100644
index 0000000..111cdb5
--- /dev/null
+++ b/modeling/libraries/pmlschema/InformativeComponent.xsd
@@ -0,0 +1,19 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="MultiComponent.xsd"/>
+
+ <xsd:complexType name="InformativeComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ It is used to define labeled groups or entities that are not essential for
+ the model but useful for separating or manipulating a given set of
+ structures.
+ The informative components is optional.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:group ref="MultiComponent"/>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/MultiComponent.xsd b/modeling/libraries/pmlschema/MultiComponent.xsd
new file mode 100644
index 0000000..074e69e
--- /dev/null
+++ b/modeling/libraries/pmlschema/MultiComponent.xsd
@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="StructuralComponent.xsd"/>
+
+ <xsd:group name="MultiComponent">
+ <xsd:sequence>
+ <xsd:element name="multiComponent" type="MultiComponent"/>
+ </xsd:sequence>
+ </xsd:group>
+
+ <xsd:complexType name="MultiComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ A multi-level component (multi-component) consist of any number of components:
+ structural components and/or multi-components.
+ It is used to group entities and allow hierarchical representation and tree-like
+ organization.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:choice minOccurs="0" maxOccurs="unbounded">
+ <xsd:group ref="MultiComponent"/>
+ <xsd:group ref="StructuralComponent"/>
+ </xsd:choice>
+ <xsd:attribute name="name" type="xsd:string"/>
+ <xsd:anyAttribute namespace="##any" processContents="lax" />
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/NrOfStructures.xsd b/modeling/libraries/pmlschema/NrOfStructures.xsd
new file mode 100644
index 0000000..b804d64
--- /dev/null
+++ b/modeling/libraries/pmlschema/NrOfStructures.xsd
@@ -0,0 +1,13 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:complexType name="NrOfStructures">
+ <xsd:complexContent>
+ <xsd:restriction base="xsd:anyType">
+ <xsd:attribute name="value" type="xsd:int" use="required"/>
+ </xsd:restriction>
+ </xsd:complexContent>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/PhysicalModel.xsd b/modeling/libraries/pmlschema/PhysicalModel.xsd
new file mode 100644
index 0000000..0649a37
--- /dev/null
+++ b/modeling/libraries/pmlschema/PhysicalModel.xsd
@@ -0,0 +1,76 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--
+ Document : physicalModel.xsd
+ Created on : 19 February 2002, 11:35
+ Author : Emmanuel Promayon
+ Description:
+ Schema for validating physical model documents.
+ Revision : $Id: physicalModel.xsd 2220 2004-03-16 19:59:43Z promayon $
+ Version 0.3 => Nico has changed ##any in attributes
+-->
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="ExclusiveComponent.xsd"/>
+ <xsd:include schemaLocation="InformativeComponent.xsd"/>
+ <xsd:include schemaLocation="Atoms.xsd"/>
+
+ <xsd:element name="physicalModel" type="PhysicalModel">
+ <xsd:annotation>
+ <xsd:documentation>
+ The root element for the document describing a physical model.
+
+ It is here specified that atom index must be unique and that atomRef
+ must be reference to existante atom index.
+ </xsd:documentation>
+ </xsd:annotation>
+
+ <xsd:key name="UniqueAtomIndex">
+ <xsd:annotation>
+ <xsd:documentation>
+ Define a unique key for atom index
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:selector xpath=".//atoms/atomProperties"/>
+ <xsd:field xpath="@index"/>
+ </xsd:key>
+
+ <xsd:keyref name="NoUnknownAtomIndex" refer="UniqueAtomIndex">
+ <xsd:annotation>
+ <xsd:documentation>
+ Cells have to use existing atom index
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:selector xpath=".//cells/atomRef"/>
+ <xsd:field xpath="@index"/>
+ </xsd:keyref>
+
+ </xsd:element>
+
+ <xsd:complexType name="PhysicalModel">
+ <xsd:annotation>
+ <xsd:documentation>
+ physical model is a generic representation for 3D physical model
+ (FEM, spring mass network, phymul...).
+ Attributes are optional. If present they are used to optimize the
+ reading of the document.
+ </xsd:documentation>
+ </xsd:annotation>
+
+ <xsd:all>
+ <xsd:element name="atoms" type="Atoms"/>
+ <xsd:element name="exclusiveComponents" type="ExclusiveComponent"/>
+ <xsd:element name="informativeComponents" type="InformativeComponent" minOccurs="0"/>
+ </xsd:all>
+
+ <xsd:attribute name="name" type="xsd:string"/>
+ <xsd:attribute name="nrOfAtoms" type="xsd:int"/>
+ <xsd:attribute name="nrOfExclusiveComponents" type="xsd:int"/>
+ <xsd:attribute name="nrOfInformativeComponents" type="xsd:int"/>
+ <xsd:attribute name="nrOfCells" type="xsd:int"/>
+ <xsd:anyAttribute namespace="##any" processContents="lax" />
+ </xsd:complexType>
+
+
+</xsd:schema>
diff --git a/modeling/libraries/pmlschema/RenderingMode.xsd b/modeling/libraries/pmlschema/RenderingMode.xsd
new file mode 100644
index 0000000..d534423
--- /dev/null
+++ b/modeling/libraries/pmlschema/RenderingMode.xsd
@@ -0,0 +1,23 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:simpleType name="RenderingMode">
+ <xsd:annotation>
+ <xsd:documentation>
+ How a 3D graphics application should try to represent the element
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:restriction base="xsd:string">
+ <xsd:enumeration value="NONE"/>
+ <xsd:enumeration value="POINTS"/>
+ <xsd:enumeration value="POINTS_AND_SURFACE"/>
+ <xsd:enumeration value="SURFACE"/>
+ <xsd:enumeration value="WIREFRAME_AND_SURFACE"/>
+ <xsd:enumeration value="WIREFRAME_AND_POINTS"/>
+ <xsd:enumeration value="WIREFRAME"/>
+ <xsd:enumeration value="WIREFRAME_AND_SURFACE_AND_POINTS"/>
+ </xsd:restriction>
+ </xsd:simpleType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pmlschema/StructuralComponent.xsd b/modeling/libraries/pmlschema/StructuralComponent.xsd
new file mode 100644
index 0000000..e701716
--- /dev/null
+++ b/modeling/libraries/pmlschema/StructuralComponent.xsd
@@ -0,0 +1,43 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
+
+ <xsd:include schemaLocation="NrOfStructures.xsd"/>
+ <xsd:include schemaLocation="RenderingMode.xsd"/>
+ <xsd:include schemaLocation="Color.xsd"/>
+ <xsd:include schemaLocation="Atom.xsd"/>
+ <xsd:include schemaLocation="Cell.xsd"/>
+
+ <xsd:group name="StructuralComponent">
+ <xsd:sequence>
+ <xsd:element name="structuralComponent" type="StructuralComponent"/>
+ </xsd:sequence>
+ </xsd:group>
+
+ <xsd:complexType name="StructuralComponent">
+ <xsd:annotation>
+ <xsd:documentation>
+ A structural component is a group of structures.
+ It is generally composed of cells, although it can be composed of atoms.
+ Note that a cell can also be considered as a structural component as it is
+ defined by a set of atoms.
+ nrOfStructures is optional and is used for optimization.
+ Attribute mode indicates what is the default 3D graphic representation.
+ </xsd:documentation>
+ </xsd:annotation>
+ <xsd:sequence>
+ <xsd:element name="color" type="Color" minOccurs="0"/>
+ <xsd:element name="nrOfStructures" type="NrOfStructures" minOccurs="0"/>
+ <xsd:choice>
+ <xsd:element name="atom" type="Atom" minOccurs="0" maxOccurs="unbounded"/>
+ <xsd:element name="cell" type="Cell" minOccurs="0" maxOccurs="unbounded"/>
+ <xsd:element name="atomRef" type="AtomRef" minOccurs="0" maxOccurs="unbounded"/>
+ </xsd:choice>
+ </xsd:sequence>
+ <xsd:attribute name="name" type="xsd:string"/>
+ <xsd:attribute name="mode" type="RenderingMode"/>
+ <!-- adding any kind of attributes -->
+ <xsd:anyAttribute namespace="##any" processContents="lax"/>
+ </xsd:complexType>
+
+</xsd:schema>
\ No newline at end of file
diff --git a/modeling/libraries/pml/xsl/x3d/README b/modeling/libraries/pmlschema/xsl/x3d/README
similarity index 100%
rename from modeling/libraries/pml/xsl/x3d/README
rename to modeling/libraries/pmlschema/xsl/x3d/README
diff --git a/modeling/libraries/pml/xsl/x3d/teapot.x3d b/modeling/libraries/pmlschema/xsl/x3d/teapot.x3d
similarity index 100%
rename from modeling/libraries/pml/xsl/x3d/teapot.x3d
rename to modeling/libraries/pmlschema/xsl/x3d/teapot.x3d
diff --git a/modeling/libraries/pml/xsl/x3d/test1.x3d b/modeling/libraries/pmlschema/xsl/x3d/test1.x3d
similarity index 100%
rename from modeling/libraries/pml/xsl/x3d/test1.x3d
rename to modeling/libraries/pmlschema/xsl/x3d/test1.x3d
diff --git a/modeling/libraries/pml/xsl/x3d/x3d2pml.bat b/modeling/libraries/pmlschema/xsl/x3d/x3d2pml.bat
similarity index 100%
rename from modeling/libraries/pml/xsl/x3d/x3d2pml.bat
rename to modeling/libraries/pmlschema/xsl/x3d/x3d2pml.bat
diff --git a/modeling/libraries/pmlschema/xsl/x3d/x3d2pml.xsl b/modeling/libraries/pmlschema/xsl/x3d/x3d2pml.xsl
new file mode 100644
index 0000000..50b3413
--- /dev/null
+++ b/modeling/libraries/pmlschema/xsl/x3d/x3d2pml.xsl
@@ -0,0 +1,198 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<!--
+ Document : x3d2pml.xsl
+ Created on : 22 October 2004, 11:00
+ Author : emmanuel promayon
+ Description:
+ Convert a simple X3D file ("nterchange" profile) to PML
+
+ v 0.1, 22 Oct 2004
+ - Supports only IndexedFacetSet
+ - only works for one instance of <Shape>
+ - only works for triangle and quand facets
+
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+-->
+
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
+ xmlns:x3d='http://www.web3d.org/specifications/x3d-3.0.xsd'
+ xmlns:str="http://exslt.org/strings"
+ id="xsl2pml 0.1">
+<!-- xmlns:date="http://exslt.org/dates-and-times"
+ xmlns:common="http://exslt.org/common">//-->
+
+ <xsl:output method="xml" indent="yes" encoding="UTF-8"/>
+
+ <!-- top level -->
+ <xsl:template match="/X3D">
+
+ <xsl:element name="physicalModel">
+
+ <xsl:attribute name="name">converted from X3D</xsl:attribute>
+
+ <!-- only convert the first Shape -->
+ <xsl:apply-templates select="//Shape[1]"/>
+
+ </xsl:element>
+
+ </xsl:template>
+
+ <!-- Shape level -->
+ <xsl:template match="Shape">
+
+ <!-- get color and transparencies -->
+ <xsl:variable name="rgb">
+ <xsl:choose>
+ <xsl:when test="count(Appearance/Material/@diffuseColor) > 0">
+ <xsl:value-of select="Appearance/Material/@diffuseColor"/>
+ </xsl:when>
+ <xsl:otherwise>0.5 0.5 0.5</xsl:otherwise>
+ </xsl:choose>
+ </xsl:variable>
+ <xsl:variable name="alpha">
+ <xsl:choose>
+ <!-- transparency is the inverse of alpha chanel -->
+ <xsl:when test="count(Appearance/Material/@transparency) > 0">
+ <xsl:value-of select="1.0 - Appearance/Material/@transparency"/>
+ </xsl:when>
+ <xsl:otherwise>1.0</xsl:otherwise>
+ </xsl:choose>
+ </xsl:variable>
+
+
+ <!-- create atom list from the Coordinate @point -->
+ <xsl:apply-templates select="IndexedFaceSet/Coordinate"/>
+
+ <!-- create the list of facets, i.e cells -->
+ <exclusiveComponents>
+ <multiComponent name="Exclusive components">
+ <!-- call the templates with specified colors -->
+ <xsl:apply-templates select="IndexedFaceSet">
+ <xsl:with-param name="rgb" select="$rgb"/>
+ <xsl:with-param name="alpha" select="$alpha"/>
+ </xsl:apply-templates>
+ </multiComponent>
+ </exclusiveComponents>
+ </xsl:template>
+
+ <!-- Coordinate level -->
+ <xsl:template match="Coordinate">
+ <atoms>
+ <structuralComponent name="element list">
+
+ <!-- split the point attribute value to coordinates triplets -->
+ <xsl:for-each select="str:split(@point, ', ')">
+
+ <!-- here the value of . is " xi yi zi" (with any number of space separating the values) -->
+
+ <!-- xCoord is the first token when separating using space, yCoord the second and zCoord the last one -->
+ <xsl:variable name="xCoord" select="str:split(.,' ')[1]"/>
+ <xsl:variable name="yCoord" select="str:split(.,' ')[2]"/>
+ <xsl:variable name="zCoord" select="str:split(.,' ')[3]"/>
+
+ <!-- for each triplet output a new atom and its position -->
+ <atom>
+ <xsl:element name="atomProperties">
+ <xsl:attribute name="index">
+ <xsl:copy-of select="position()-1"/> <!-- index starts at 0 -->
+ </xsl:attribute>
+ <xsl:attribute name="x">
+ <xsl:copy-of select="$xCoord"/>
+ </xsl:attribute>
+ <xsl:attribute name="y">
+ <xsl:copy-of select="$yCoord"/>
+ </xsl:attribute>
+ <xsl:attribute name="z">
+ <xsl:copy-of select="$zCoord"/>
+ </xsl:attribute>
+ </xsl:element>
+ </atom>
+
+ </xsl:for-each>
+
+ </structuralComponent>
+ </atoms>
+
+ </xsl:template>
+
+ <xsl:template match="IndexedFaceSet">
+ <xsl:param name="rgb"/>
+ <xsl:param name="alpha"/>
+
+ <structuralComponent name="IndexedFaceSet" mode="WIREFRAME_AND_SURFACE">
+
+ <xsl:element name="color">
+ <xsl:attribute name="r">
+ <xsl:value-of select="$rgb"/>
+ </xsl:attribute>
+ <xsl:attribute name="a">
+ <xsl:value-of select="$alpha"/>
+ </xsl:attribute>
+ </xsl:element>
+
+ <!-- split the coordIndex to get each facet index -->
+ <xsl:for-each select="str:split(@coordIndex, '-1')">
+ <!-- a facet is a pml cell
+ Here the value of . is " v1 v2 ... vn"
+ -->
+ <!-- compute nr of vertices -->
+ <xsl:variable name="nbOfVertices" select="count(str:split(.,' '))"/>
+
+ <!-- do not create any cell if the list of vertices is empty! -->
+ <xsl:if test="$nbOfVertices > 0">
+ <cell>
+ <xsl:element name="cellProperties">
+ <xsl:attribute name="type">
+
+ <xsl:choose>
+ <xsl:when test="$nbOfVertices = 3">TRIANGLE</xsl:when>
+ <xsl:when test="$nbOfVertices = 4">QUAD</xsl:when>
+ <xsl:otherwise>POLY_VERTEX</xsl:otherwise>
+ </xsl:choose>
+ </xsl:attribute>
+ </xsl:element>
+
+ <!-- the atom index -->
+ <xsl:for-each select="str:split(.,' ')">
+ <!-- here . is the index of the atom -->
+ <xsl:element name="atomRef">
+ <xsl:attribute name="index">
+ <xsl:value-of select="."/>
+ </xsl:attribute>
+ </xsl:element>
+ </xsl:for-each>
+
+ </cell>
+ </xsl:if>
+ </xsl:for-each>
+
+ </structuralComponent>
+
+ </xsl:template>
+
+</xsl:stylesheet>
\ No newline at end of file
diff --git a/sdk/CMakeLists.txt b/sdk/CMakeLists.txt
index 9dfa900..10cab3b 100644
--- a/sdk/CMakeLists.txt
+++ b/sdk/CMakeLists.txt
@@ -4,13 +4,10 @@
# You should probably NOT modify this file...
# Please edit CEPDescription.cmake instead
#--------------------------------------------
-
-cmake_minimum_required(VERSION 2.6)
-
include(SDKConfig.cmake)
# Please add your project name inside the project() brackets, e.g. project(myProject)
-project(${CEP_NAME})
+# project(${CEP_NAME})
# Mini find CamiTK inside SDK
set(CAMITK_DIR ${CMAKE_BINARY_DIR})
@@ -67,6 +64,15 @@ add_custom_target(sdk_local_install
COMMENT "Local installation"
)
+# camitk_update_translate == configure all the .qrc files for the different extensions of the SDK.
+# .qrc files consider up to date .ts resources files for translation
+add_custom_target(sdk_updatetranslate
+ COMMAND ${CMAKE_COMMAND} -E echo "Updating translation for CamiTK SDK"
+ COMMAND ${CMAKE_COMMAND} -DCAMITK_TRANSLATE=TRUE ${CMAKE_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} -DCAMITK_TRANSLATE=FALSE ${CMAKE_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} -E echo "Translation updated for CamiTK SDK"
+)
+
# make sure a copy of the CamiTKDir.txt file is written to ${CAMITK_USER_DIR}
# even if the user is just invoking the "install" target (from the IDE or command line)
install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target sdk_copy_camitkdirtxt)")
diff --git a/sdk/COPYRIGHT b/sdk/COPYRIGHT
index 2c6300a..f42d7b0 100644
--- a/sdk/COPYRIGHT
+++ b/sdk/COPYRIGHT
@@ -1,7 +1,7 @@
$CAMITK_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/sdk/SDKConfig.cmake b/sdk/SDKConfig.cmake
index e31decf..248f15f 100644
--- a/sdk/SDKConfig.cmake
+++ b/sdk/SDKConfig.cmake
@@ -23,25 +23,29 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/libraries/core/CamiTKVersion.h.in ${C
if(NOT EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/libraries/core/CamiTKVersion.h)
set(CAMITK_SOURCE_PACKAGE_VERSION "0")
# If this file does not exist => this is a svn checkouted source tree.
- find_package(Subversion QUIET)
- if(Subversion_FOUND)
- set(CAMITK_SVN_SUBVERSION_FOUND "1")
- # get all information from the svn command itself
- Subversion_WC_INFO(${CMAKE_CURRENT_SOURCE_DIR} CAMITK_SVN)
- set(CAMITK_VERSION_SVN ".${CAMITK_SVN_WC_REVISION}")
- string(REGEX REPLACE "^([0-9]+)-([0-9]+)-([0-9]+) ([0-9]+):([0-9]+):([0-9]+).*" "\\1-\\2-\\3 \\4:\\5:\\6" CAMITK_SVN_DATE "${CAMITK_SVN_WC_LAST_CHANGED_DATE}")
+ find_package(Git QUIET)
+ if(GIT_FOUND)
+ set(CAMITK_GIT_FOUND "1")
+ # Call a macro Git_WC_INFO which is define in
+ # GetGitInfo.cmake to get all information from
+ # the svn command itself
+ include(cmake/modules/macros/GetGitInfo.cmake)
+ get_git_info(${CMAKE_CURRENT_SOURCE_DIR})
+ set(CAMITK_VERSION_GIT ".${CAMITK_GIT_BRANCH}.${CAMITK_GIT_ABBREVIATED_HASH}")
+ set(CAMITK_GIT_FOUND "1")
+ set(CAMITK_GIT_HASH "${CAMITK_GIT_HASH}")
+ set(CAMITK_GIT_DATE "${CAMITK_GIT_COMMITER_DATE}")
else()
- set(CAMITK_SVN_SUBVERSION_FOUND "0")
- # svn command is not accessible, just set the string to something
- set(CAMITK_VERSION_SVN ".svn")
- endif()
+ set(CAMITK_VERSION_GIT ".git")
+ set(CAMITK_GIT_FOUND "0")
+ endif()
else()
- set(CAMITK_SVN_SUBVERSION_FOUND "0")
+ set(CAMITK_GIT_FOUND "0")
set(CAMITK_SOURCE_PACKAGE_VERSION "1")
endif()
-# specific version string using the svn revision
-set(CAMITK_VERSION_STRING "${CAMITK_VERSION_STRING}${CAMITK_VERSION_SVN}")
+# specific version string using the git revision
+set(CAMITK_VERSION_STRING "${CAMITK_VERSION_STRING}${CAMITK_VERSION_GIT}")
# prepare the CamiTKConfig.cmake for installation (first delete it to force regeneration)
execute_process(COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_BINARY_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cmake/CamiTKConfig.cmake)
@@ -52,4 +56,4 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/libraries/core/CamiTKVersion.h.in ${C
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR})
-message(STATUS "Welcome to ${CAMITK_VERSION_STRING} SDK compilation")
+message(STATUS "Welcome to ${CAMITK_VERSION_STRING} SDK compilation")
\ No newline at end of file
diff --git a/sdk/actions/application/AboutAction.cpp b/sdk/actions/application/AboutAction.cpp
index 42ed7ff..c7c8494 100644
--- a/sdk/actions/application/AboutAction.cpp
+++ b/sdk/actions/application/AboutAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,6 +23,7 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
#include "AboutAction.h"
+#include "ReportBugDialog.h"
#include <Application.h>
#include <Core.h>
@@ -32,6 +33,9 @@ using namespace camitk;
#include <QBoxLayout>
#include <QLabel>
#include <QDialogButtonBox>
+#include <QPushButton>
+
+#include <vtkVersion.h>
// --------------- constructor -------------------
AboutAction::AboutAction(ActionExtension * extension) : Action(extension) {
@@ -63,6 +67,13 @@ Action::ApplyStatus AboutAction::apply() {
aboutDialog->setWindowTitle(tr("About ") + Application::getName() + "...");
QVBoxLayout *dialogLayout = new QVBoxLayout;
QHBoxLayout *informationLayout = new QHBoxLayout;
+ QGridLayout *buttonGrid = new QGridLayout;
+ QPushButton *reportBugButton = new QPushButton(aboutDialog);
+ reportBugButton->setText("Report Bug");
+
+ ReportBugDialog *bugDialog = new ReportBugDialog();
+
+ bugDialog->setBugReport();
QLabel *logo = new QLabel;
logo->setPixmap(QPixmap(":/camiTKIcon"));
@@ -71,10 +82,11 @@ Action::ApplyStatus AboutAction::apply() {
text->setTextFormat(Qt::RichText);
text->setOpenExternalLinks(true);
text->setText("<b>"+Application::getName() + "</b><br/>"
- +tr("Build using ")
+ +tr("Build with ")
+ QString(Core::version) + "<br/>"
+ + "VTK: " + QString(vtkVersion::GetVTKVersion()) + " - Qt: " + QString(qVersion()) + "<br/><br/>"
+ tr("Please visit <a href='http://camitk.imag.fr'>camitk.imag.fr</a> for more information.<br/>")
- + tr("(c) UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525"));
+ + tr("(c) UGA-Grenoble 1, CNRS, TIMC-IMAG UMR 5525"));
// get the proper text height
text->adjustSize();
@@ -85,10 +97,13 @@ Action::ApplyStatus AboutAction::apply() {
informationLayout->addWidget(logo);
informationLayout->addWidget(text);
dialogLayout->addLayout(informationLayout);
+ dialogLayout->addLayout(buttonGrid);
QDialogButtonBox *buttonBox = new QDialogButtonBox(QDialogButtonBox::Ok);
connect(buttonBox, SIGNAL(accepted()), aboutDialog, SLOT(accept()));
- dialogLayout->addWidget(buttonBox);
+ connect(reportBugButton, SIGNAL(clicked()), bugDialog, SLOT(exec()));
+ buttonGrid->addWidget(buttonBox,0,1);
+ buttonGrid->addWidget(reportBugButton,0,2);
aboutDialog->setLayout(dialogLayout);
aboutDialog->setWindowIcon(QPixmap(":/camiTKIcon"));
diff --git a/sdk/actions/application/AboutAction.h b/sdk/actions/application/AboutAction.h
index cdac81c..0b457da 100644
--- a/sdk/actions/application/AboutAction.h
+++ b/sdk/actions/application/AboutAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
**/
class AboutAction : public camitk::Action {
Q_OBJECT
-
+
public:
/// Default Constructor
AboutAction(camitk::ActionExtension * extension);
diff --git a/sdk/actions/application/ApplicationActionExtension.cpp b/sdk/actions/application/ApplicationActionExtension.cpp
index 3a4b043..acc81d8 100644
--- a/sdk/actions/application/ApplicationActionExtension.cpp
+++ b/sdk/actions/application/ApplicationActionExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -48,9 +48,6 @@
#include "ShowArbitraryViewer.h"
#include "ChangeLanguage.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(applicationaction, ApplicationActionExtension)
-
// --------------- constructor -------------------
ApplicationActionExtension::ApplicationActionExtension() : ActionExtension() {}
@@ -77,5 +74,6 @@ void ApplicationActionExtension::init() {
registerNewAction(ShowSagittalViewer);
registerNewAction(Show3DViewer);
registerNewAction(ShowAllViewers);
- registerNewAction(ShowArbitraryViewer);
+ // disabled as long as this viewer is not working
+ // registerNewAction(ShowArbitraryViewer);
}
\ No newline at end of file
diff --git a/sdk/actions/application/ApplicationActionExtension.h b/sdk/actions/application/ApplicationActionExtension.h
index 013918d..3ce253f 100644
--- a/sdk/actions/application/ApplicationActionExtension.h
+++ b/sdk/actions/application/ApplicationActionExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,13 +43,14 @@
class ApplicationActionExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.application")
public:
/// the constructor (needed to initialize the icon resources)
ApplicationActionExtension();
/// the destructor
- virtual ~ApplicationActionExtension() {};
+ virtual ~ApplicationActionExtension() {}
/// initialize all the actions
virtual void init();
@@ -66,4 +67,4 @@ public:
};
-#endif // APPLICATION_ACTION_EXTENSION_H
\ No newline at end of file
+#endif // APPLICATION_ACTION_EXTENSION_H
diff --git a/sdk/actions/application/BugReportDialog.ui b/sdk/actions/application/BugReportDialog.ui
new file mode 100644
index 0000000..b20d826
--- /dev/null
+++ b/sdk/actions/application/BugReportDialog.ui
@@ -0,0 +1,112 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>BugReportDialog</class>
+ <widget class="QDialog" name="BugReportDialog">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>800</width>
+ <height>600</height>
+ </rect>
+ </property>
+ <property name="windowTitle">
+ <string>Report Bug Dialog</string>
+ </property>
+ <property name="modal">
+ <bool>true</bool>
+ </property>
+ <widget class="QWidget" name="verticalLayoutWidget">
+ <property name="geometry">
+ <rect>
+ <x>10</x>
+ <y>10</y>
+ <width>781</width>
+ <height>47</height>
+ </rect>
+ </property>
+ <layout class="QVBoxLayout" name="labelLayout">
+ <item>
+ <widget class="QLabel" name="descriptionLabel">
+ <property name="text">
+ <string>Generated bug report to complete and paste in the :</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="bugSystemLinkLabel">
+ <property name="text">
+ <string><html><head/><body><p><br/></p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QTextEdit" name="bugReportTextEdit">
+ <property name="geometry">
+ <rect>
+ <x>10</x>
+ <y>60</y>
+ <width>781</width>
+ <height>491</height>
+ </rect>
+ </property>
+ </widget>
+ <widget class="QWidget" name="gridLayoutWidget">
+ <property name="geometry">
+ <rect>
+ <x>550</x>
+ <y>560</y>
+ <width>241</width>
+ <height>31</height>
+ </rect>
+ </property>
+ <layout class="QGridLayout" name="buttonLayout" rowstretch="0" rowminimumheight="0" columnminimumwidth="0,0">
+ <property name="leftMargin">
+ <number>0</number>
+ </property>
+ <property name="verticalSpacing">
+ <number>6</number>
+ </property>
+ <item row="0" column="1">
+ <widget class="QPushButton" name="closeButton">
+ <property name="text">
+ <string>Close</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QPushButton" name="copyButton">
+ <property name="text">
+ <string>Copy to Clilpboard</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ <tabstops>
+ <tabstop>closeButton</tabstop>
+ <tabstop>copyButton</tabstop>
+ <tabstop>bugReportTextEdit</tabstop>
+ </tabstops>
+ <resources/>
+ <connections>
+ <connection>
+ <sender>closeButton</sender>
+ <signal>clicked()</signal>
+ <receiver>BugReportDialog</receiver>
+ <slot>close()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>770</x>
+ <y>564</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>199</x>
+ <y>149</y>
+ </hint>
+ </hints>
+ </connection>
+ </connections>
+</ui>
diff --git a/sdk/actions/application/ChangeLanguage.cpp b/sdk/actions/application/ChangeLanguage.cpp
index 01066d4..d3a90cf 100644
--- a/sdk/actions/application/ChangeLanguage.cpp
+++ b/sdk/actions/application/ChangeLanguage.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ChangeLanguage.h b/sdk/actions/application/ChangeLanguage.h
index 379a00a..1bdc4b9 100644
--- a/sdk/actions/application/ChangeLanguage.h
+++ b/sdk/actions/application/ChangeLanguage.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ClearSelectionAction.cpp b/sdk/actions/application/ClearSelectionAction.cpp
index b971b7e..4c138cb 100644
--- a/sdk/actions/application/ClearSelectionAction.cpp
+++ b/sdk/actions/application/ClearSelectionAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ClearSelectionAction.h b/sdk/actions/application/ClearSelectionAction.h
index 844afa7..1fbba90 100644
--- a/sdk/actions/application/ClearSelectionAction.h
+++ b/sdk/actions/application/ClearSelectionAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/CloseAction.cpp b/sdk/actions/application/CloseAction.cpp
index ccda8ff..593893c 100644
--- a/sdk/actions/application/CloseAction.cpp
+++ b/sdk/actions/application/CloseAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/CloseAction.h b/sdk/actions/application/CloseAction.h
index 9ccea41..0cff4a0 100644
--- a/sdk/actions/application/CloseAction.h
+++ b/sdk/actions/application/CloseAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/CloseAllAction.cpp b/sdk/actions/application/CloseAllAction.cpp
index aa7391e..0b06d52 100644
--- a/sdk/actions/application/CloseAllAction.cpp
+++ b/sdk/actions/application/CloseAllAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/CloseAllAction.h b/sdk/actions/application/CloseAllAction.h
index 1b2c1ef..d7fa70a 100644
--- a/sdk/actions/application/CloseAllAction.h
+++ b/sdk/actions/application/CloseAllAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/GenerateBugReportProcess.cpp b/sdk/actions/application/GenerateBugReportProcess.cpp
new file mode 100644
index 0000000..7042bd1
--- /dev/null
+++ b/sdk/actions/application/GenerateBugReportProcess.cpp
@@ -0,0 +1,33 @@
+/*****************************************************************************
+* $CAMITK_LICENCE_BEGIN$
+*
+* CamiTK - Computer Assisted Medical Intervention ToolKit
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+*
+* Visit http://camitk.imag.fr for more information
+*
+* This file is part of CamiTK.
+*
+* CamiTK is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Lesser General Public License version 3
+* only, as published by the Free Software Foundation.
+*
+* CamiTK is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU Lesser General Public License version 3 for more details.
+*
+* You should have received a copy of the GNU Lesser General Public License
+* version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+*
+* $CAMITK_LICENCE_END$
+****************************************************************************/
+#include "GenerateBugReportProcess.h"
+#include <Core.h>
+
+class QThread;
+
+void GenerateBugReportProcess::run() {
+ QString result(camitk::Core::getBugReport());
+ emit resultReady(result);
+}
\ No newline at end of file
diff --git a/sdk/actions/application/GenerateBugReportProcess.h b/sdk/actions/application/GenerateBugReportProcess.h
new file mode 100644
index 0000000..1e7df0d
--- /dev/null
+++ b/sdk/actions/application/GenerateBugReportProcess.h
@@ -0,0 +1,39 @@
+/*****************************************************************************
+* $CAMITK_LICENCE_BEGIN$
+*
+* CamiTK - Computer Assisted Medical Intervention ToolKit
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+*
+* Visit http://camitk.imag.fr for more information
+*
+* This file is part of CamiTK.
+*
+* CamiTK is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Lesser General Public License version 3
+* only, as published by the Free Software Foundation.
+*
+* CamiTK is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU Lesser General Public License version 3 for more details.
+*
+* You should have received a copy of the GNU Lesser General Public License
+* version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+*
+* $CAMITK_LICENCE_END$
+****************************************************************************/
+#ifndef GENERATE_BUG_REPORT_PROCESS_H
+#define GENERATE_BUG_REPORT_PROCESS_H
+
+#include <QThread>
+
+class GenerateBugReportProcess : public QThread {
+ Q_OBJECT
+public:
+ void run();
+
+signals:
+ void resultReady(const QString &s);
+};
+
+#endif // GENERATE_BUG_REPORT_PROCESS_H
\ No newline at end of file
diff --git a/sdk/actions/application/OpenAction.cpp b/sdk/actions/application/OpenAction.cpp
index f82a60f..8dce55d 100644
--- a/sdk/actions/application/OpenAction.cpp
+++ b/sdk/actions/application/OpenAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,18 +40,15 @@ OpenAction::OpenAction (ActionExtension * extension) : Action (extension) {
setEmbedded (false);
setDescription (tr("Open data (component) from a file"));
setComponent ("");
- if (qApp->type() != QApplication::Tty)
- setIcon (QPixmap (":/fileOpen"));
-
+
// Setting classification family and tags
setFamily ("Application");
addTag (tr("Open"));
// add a shortcut
- if (qApp->type() != QApplication::Tty) {
- getQAction()->setShortcut( QKeySequence::Open );
- getQAction()->setShortcutContext(Qt::ApplicationShortcut);
- }
+ setIcon(QPixmap(":/fileOpen"));
+ getQAction()->setShortcut( QKeySequence::Open );
+ getQAction()->setShortcutContext(Qt::ApplicationShortcut);
}
// --------------- destructor -------------------
diff --git a/sdk/actions/application/OpenAction.h b/sdk/actions/application/OpenAction.h
index 53bd244..af6adc7 100644
--- a/sdk/actions/application/OpenAction.h
+++ b/sdk/actions/application/OpenAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/OpenFile.cpp b/sdk/actions/application/OpenFile.cpp
index 533250e..6b473dc 100644
--- a/sdk/actions/application/OpenFile.cpp
+++ b/sdk/actions/application/OpenFile.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -45,18 +45,15 @@ OpenFile::OpenFile (ActionExtension * extension) : Action (extension) {
setDescription(tr("Open data (component) from a given file"));
setComponent("");
- if (qApp->type() != QApplication::Tty)
- setIcon (QPixmap (":/fileOpen"));
+ setIcon (QPixmap (":/fileOpen"));
// Setting classification family and tags
setFamily("Application");
addTag(tr("Open"));
// add a shortcut
- if (qApp->type() != QApplication::Tty) {
- getQAction()->setShortcut( QKeySequence::Open );
- getQAction()->setShortcutContext(Qt::ApplicationShortcut);
- }
+ getQAction()->setShortcut( QKeySequence::Open );
+ getQAction()->setShortcutContext(Qt::ApplicationShortcut);
// the unique property is the filename
Property* fileNameProperty = new Property(tr("File name"), "", tr("The name of the file to open."), "");
diff --git a/sdk/actions/application/OpenFile.h b/sdk/actions/application/OpenFile.h
index 7b6bead..d861eb1 100644
--- a/sdk/actions/application/OpenFile.h
+++ b/sdk/actions/application/OpenFile.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/QuitAction.cpp b/sdk/actions/application/QuitAction.cpp
index b7d0696..aeb3795 100644
--- a/sdk/actions/application/QuitAction.cpp
+++ b/sdk/actions/application/QuitAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/QuitAction.h b/sdk/actions/application/QuitAction.h
index e7d2834..b7efca0 100644
--- a/sdk/actions/application/QuitAction.h
+++ b/sdk/actions/application/QuitAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/RemoveLastInstanciatedAction.cpp b/sdk/actions/application/RemoveLastInstanciatedAction.cpp
index 24565ad..4054237 100644
--- a/sdk/actions/application/RemoveLastInstanciatedAction.cpp
+++ b/sdk/actions/application/RemoveLastInstanciatedAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/RemoveLastInstanciatedAction.h b/sdk/actions/application/RemoveLastInstanciatedAction.h
index d798c1f..bf4b550 100644
--- a/sdk/actions/application/RemoveLastInstanciatedAction.h
+++ b/sdk/actions/application/RemoveLastInstanciatedAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ReportBugDialog.cpp b/sdk/actions/application/ReportBugDialog.cpp
new file mode 100644
index 0000000..6c877e0
--- /dev/null
+++ b/sdk/actions/application/ReportBugDialog.cpp
@@ -0,0 +1,65 @@
+/*****************************************************************************
+* $CAMITK_LICENCE_BEGIN$
+*
+* CamiTK - Computer Assisted Medical Intervention ToolKit
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+*
+* Visit http://camitk.imag.fr for more information
+*
+* This file is part of CamiTK.
+*
+* CamiTK is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Lesser General Public License version 3
+* only, as published by the Free Software Foundation.
+*
+* CamiTK is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU Lesser General Public License version 3 for more details.
+*
+* You should have received a copy of the GNU Lesser General Public License
+* version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+*
+* $CAMITK_LICENCE_END$
+****************************************************************************/
+
+#include "ReportBugDialog.h"
+
+// Qt stuff
+#include <QDebug>
+#include <QClipboard>
+
+
+// -------------------- constructor --------------------
+ReportBugDialog::ReportBugDialog(QDialog* parent) : QDialog(parent) {
+ ui = new Ui::BugReportDialog();
+
+ ui->setupUi(this);
+ ui->bugSystemLinkLabel->setOpenExternalLinks(true);
+ ui->bugSystemLinkLabel->setText("<a href='https://bugzilla-timc.imag.fr/'>Bugzilla Bug Report Tool</a>");
+ connect(ui->copyButton, SIGNAL(clicked()), this, SLOT(copyReportToClipBoard()));
+
+ ui->bugReportTextEdit->setText("<font color='red'>Processing, please wait.....</font>");
+}
+
+void ReportBugDialog::showBugReport(const QString &bugReport) {
+ ui->bugReportTextEdit->setText(bugReport);
+}
+
+void ReportBugDialog::setBugReport() {
+ GenerateBugReportProcess *bGProcess = new GenerateBugReportProcess();
+ connect(bGProcess, SIGNAL(resultReady(QString)), this, SLOT(showBugReport(QString)));
+ connect(bGProcess, SIGNAL(finished()), bGProcess, SLOT(deleteLater()));
+ bGProcess->start();
+}
+
+void ReportBugDialog::copyReportToClipBoard() {
+ QClipboard *clipboard = QApplication::clipboard();
+ clipboard->setText(ui->bugReportTextEdit->toPlainText());
+}
+
+
+// -------------------- destructor --------------------
+ReportBugDialog::~ReportBugDialog() {
+ ;
+}
\ No newline at end of file
diff --git a/sdk/actions/application/ReportBugDialog.h b/sdk/actions/application/ReportBugDialog.h
new file mode 100644
index 0000000..52e1422
--- /dev/null
+++ b/sdk/actions/application/ReportBugDialog.h
@@ -0,0 +1,55 @@
+/*****************************************************************************
+* $CAMITK_LICENCE_BEGIN$
+*
+* CamiTK - Computer Assisted Medical Intervention ToolKit
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+*
+* Visit http://camitk.imag.fr for more information
+*
+* This file is part of CamiTK.
+*
+* CamiTK is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Lesser General Public License version 3
+* only, as published by the Free Software Foundation.
+*
+* CamiTK is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU Lesser General Public License version 3 for more details.
+*
+* You should have received a copy of the GNU Lesser General Public License
+* version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+*
+* $CAMITK_LICENCE_END$
+****************************************************************************/
+
+#ifndef REPORTBUGWIDGET_H
+#define REPORTBUGWIDGET_H
+
+#include "ui_BugReportDialog.h"
+#include "GenerateBugReportProcess.h"
+
+#include <QDialog>
+class QProcess;
+
+class ReportBugDialog : public QDialog {
+ Q_OBJECT
+ QThread generateBugReportProcess;
+public:
+ /// Default construtor
+ ReportBugDialog (QDialog* parent = 0);
+ void setBugReport();
+
+
+ /// Destructor
+ virtual ~ReportBugDialog();
+
+private:
+ Ui::BugReportDialog *ui;
+
+private slots:
+ void copyReportToClipBoard();
+ void showBugReport(const QString &bugReport);
+};
+
+#endif // REPORTBUGWIDGET_H
\ No newline at end of file
diff --git a/sdk/actions/application/SaveAction.cpp b/sdk/actions/application/SaveAction.cpp
index 713dc35..d35e552 100644
--- a/sdk/actions/application/SaveAction.cpp
+++ b/sdk/actions/application/SaveAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SaveAction.h b/sdk/actions/application/SaveAction.h
index 26e3f4c..bd7aa8a 100644
--- a/sdk/actions/application/SaveAction.h
+++ b/sdk/actions/application/SaveAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SaveAllAction.cpp b/sdk/actions/application/SaveAllAction.cpp
index 98fca92..540847b 100644
--- a/sdk/actions/application/SaveAllAction.cpp
+++ b/sdk/actions/application/SaveAllAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SaveAllAction.h b/sdk/actions/application/SaveAllAction.h
index 674661c..ee7c391 100644
--- a/sdk/actions/application/SaveAllAction.h
+++ b/sdk/actions/application/SaveAllAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SaveAsAction.cpp b/sdk/actions/application/SaveAsAction.cpp
index 85536df..0f13a59 100644
--- a/sdk/actions/application/SaveAsAction.cpp
+++ b/sdk/actions/application/SaveAsAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -114,7 +114,7 @@ Action::ApplyStatus SaveAsAction::apply() {
if (meshExt) {
QString meshFilter = meshExt->getName() + " (";
foreach (QString ext, meshExt->getFileExtensions()) {
- meshFilter += "*." + ext + ")";
+ meshFilter += "*." + ext + " ";
}
meshFilter += ")";
filter += meshFilter;
diff --git a/sdk/actions/application/SaveAsAction.h b/sdk/actions/application/SaveAsAction.h
index 9e2a30b..592379a 100644
--- a/sdk/actions/application/SaveAsAction.h
+++ b/sdk/actions/application/SaveAsAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SelectLastInstanciatedAction.cpp b/sdk/actions/application/SelectLastInstanciatedAction.cpp
index 498ce25..55f6199 100644
--- a/sdk/actions/application/SelectLastInstanciatedAction.cpp
+++ b/sdk/actions/application/SelectLastInstanciatedAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SelectLastInstanciatedAction.h b/sdk/actions/application/SelectLastInstanciatedAction.h
index c7f9f0d..99092b4 100644
--- a/sdk/actions/application/SelectLastInstanciatedAction.h
+++ b/sdk/actions/application/SelectLastInstanciatedAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SetPathToTestData.cpp b/sdk/actions/application/SetPathToTestData.cpp
index 8ad8d57..0aaf6f5 100644
--- a/sdk/actions/application/SetPathToTestData.cpp
+++ b/sdk/actions/application/SetPathToTestData.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/SetPathToTestData.h b/sdk/actions/application/SetPathToTestData.h
index dadccd3..2e6a81a 100644
--- a/sdk/actions/application/SetPathToTestData.h
+++ b/sdk/actions/application/SetPathToTestData.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/Show3DViewer.cpp b/sdk/actions/application/Show3DViewer.cpp
index 98822e5..81e3ae8 100644
--- a/sdk/actions/application/Show3DViewer.cpp
+++ b/sdk/actions/application/Show3DViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/Show3DViewer.h b/sdk/actions/application/Show3DViewer.h
index 2fa5446..ff5ea9e 100644
--- a/sdk/actions/application/Show3DViewer.h
+++ b/sdk/actions/application/Show3DViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowAllViewers.cpp b/sdk/actions/application/ShowAllViewers.cpp
index 33eb752..44199f3 100644
--- a/sdk/actions/application/ShowAllViewers.cpp
+++ b/sdk/actions/application/ShowAllViewers.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowAllViewers.h b/sdk/actions/application/ShowAllViewers.h
index c7849de..1546f6e 100644
--- a/sdk/actions/application/ShowAllViewers.h
+++ b/sdk/actions/application/ShowAllViewers.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowArbitraryViewer.cpp b/sdk/actions/application/ShowArbitraryViewer.cpp
index 7767c50..babd5ca 100644
--- a/sdk/actions/application/ShowArbitraryViewer.cpp
+++ b/sdk/actions/application/ShowArbitraryViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowArbitraryViewer.h b/sdk/actions/application/ShowArbitraryViewer.h
index 4065e27..78db8b1 100644
--- a/sdk/actions/application/ShowArbitraryViewer.h
+++ b/sdk/actions/application/ShowArbitraryViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowAxialViewer.cpp b/sdk/actions/application/ShowAxialViewer.cpp
index d2dd0fd..219b5d5 100644
--- a/sdk/actions/application/ShowAxialViewer.cpp
+++ b/sdk/actions/application/ShowAxialViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowAxialViewer.h b/sdk/actions/application/ShowAxialViewer.h
index 1200ad6..5391036 100644
--- a/sdk/actions/application/ShowAxialViewer.h
+++ b/sdk/actions/application/ShowAxialViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowConsoleAction.cpp b/sdk/actions/application/ShowConsoleAction.cpp
index 7f6cd96..0125e49 100644
--- a/sdk/actions/application/ShowConsoleAction.cpp
+++ b/sdk/actions/application/ShowConsoleAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowConsoleAction.h b/sdk/actions/application/ShowConsoleAction.h
index 2470765..7240302 100644
--- a/sdk/actions/application/ShowConsoleAction.h
+++ b/sdk/actions/application/ShowConsoleAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowCoronalViewer.cpp b/sdk/actions/application/ShowCoronalViewer.cpp
index 024465f..0b5ac36 100644
--- a/sdk/actions/application/ShowCoronalViewer.cpp
+++ b/sdk/actions/application/ShowCoronalViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowCoronalViewer.h b/sdk/actions/application/ShowCoronalViewer.h
index d7d7d95..fb976ab 100644
--- a/sdk/actions/application/ShowCoronalViewer.h
+++ b/sdk/actions/application/ShowCoronalViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowSagittalViewer.cpp b/sdk/actions/application/ShowSagittalViewer.cpp
index 9928147..08f5eb7 100644
--- a/sdk/actions/application/ShowSagittalViewer.cpp
+++ b/sdk/actions/application/ShowSagittalViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/ShowSagittalViewer.h b/sdk/actions/application/ShowSagittalViewer.h
index 3e8109a..fd849ec 100644
--- a/sdk/actions/application/ShowSagittalViewer.h
+++ b/sdk/actions/application/ShowSagittalViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/application/resources/translate/translate_en.ts b/sdk/actions/application/resources/translate/translate_en.ts
index c19409c..ca06f39 100644
--- a/sdk/actions/application/resources/translate/translate_en.ts
+++ b/sdk/actions/application/resources/translate/translate_en.ts
@@ -4,46 +4,74 @@
<context>
<name>AboutAction</name>
<message>
- <location filename="../../AboutAction.cpp" line="41"/>
+ <location filename="../../AboutAction.cpp" line="43"/>
<source>Show a little dialog about the application</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="47"/>
+ <location filename="../../AboutAction.cpp" line="49"/>
<source>About</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="63"/>
+ <location filename="../../AboutAction.cpp" line="65"/>
<source>About </source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="74"/>
- <source>Build using </source>
+ <location filename="../../AboutAction.cpp" line="76"/>
+ <source>Build with </source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="76"/>
+ <location filename="../../AboutAction.cpp" line="79"/>
<source>Please visit <a href='http://camitk.imag.fr'>camitk.imag.fr</a> for more information.<br/></source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="77"/>
+ <location filename="../../AboutAction.cpp" line="80"/>
<source>(c) UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525</source>
<translation type="unfinished"></translation>
</message>
</context>
<context>
+ <name>BugReportDialog</name>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="14"/>
+ <source>Report Bug Dialog</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="32"/>
+ <source>Generated bug report to complete and paste in the :</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="39"/>
+ <source><html><head/><body><p><br/></p></body></html></source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="74"/>
+ <source>Close</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="81"/>
+ <source>Copy to Clilpboard</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
<name>ChangeLanguage</name>
<message>
<location filename="../../ChangeLanguage.cpp" line="145"/>
- <source>To apply translation, restart the application !</source>
+ <source>Information</source>
<translation type="unfinished"></translation>
</message>
<message>
<location filename="../../ChangeLanguage.cpp" line="145"/>
- <source>Information</source>
+ <source>To apply translation, restart the application !</source>
<translation type="unfinished"></translation>
</message>
</context>
@@ -450,4 +478,17 @@
<translation type="unfinished"></translation>
</message>
</context>
+<context>
+ <name>ReportBugDialog</name>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/ReportBugDialog.cpp" line="40"/>
+ <source><a href='https://bugzilla-timc.imag.fr/'>Bugzilla Bug Report Tool</a></source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../../../Dev/CamiTK/camitk/sdk/actions/application/ReportBugDialog.cpp" line="63"/>
+ <source><b><font color='red'>Impossible to load </source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
</TS>
diff --git a/sdk/actions/application/resources/translate/translate_fr.ts b/sdk/actions/application/resources/translate/translate_fr.ts
index fdcdea2..f167776 100644
--- a/sdk/actions/application/resources/translate/translate_fr.ts
+++ b/sdk/actions/application/resources/translate/translate_fr.ts
@@ -4,48 +4,76 @@
<context>
<name>AboutAction</name>
<message>
- <location filename="../../AboutAction.cpp" line="41"/>
+ <location filename="../../AboutAction.cpp" line="43"/>
<source>Show a little dialog about the application</source>
<translation>Montrer une petite information à propos de l'application</translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="47"/>
+ <location filename="../../AboutAction.cpp" line="49"/>
<source>About</source>
<translation>A propos</translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="63"/>
+ <location filename="../../AboutAction.cpp" line="65"/>
<source>About </source>
<translation>A propos</translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="74"/>
- <source>Build using </source>
- <translation></translation>
+ <location filename="../../AboutAction.cpp" line="76"/>
+ <source>Build with </source>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="76"/>
+ <location filename="../../AboutAction.cpp" line="79"/>
<source>Please visit <a href='http://camitk.imag.fr'>camitk.imag.fr</a> for more information.<br/></source>
<translation>Veuillez visiter <a href='http://camitk.imag.fr'>camitk.imag.fr</a> pour plus d'informations.<br/></translation>
</message>
<message>
- <location filename="../../AboutAction.cpp" line="77"/>
+ <location filename="../../AboutAction.cpp" line="80"/>
<source>(c) UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525</source>
<translation></translation>
</message>
</context>
<context>
- <name>ChangeLanguage</name>
+ <name>BugReportDialog</name>
<message>
- <location filename="../../ChangeLanguage.cpp" line="145"/>
- <source>To apply translation, restart the application !</source>
- <translation>Pour appliquer la traduction, redémarrer votre application !</translation>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="14"/>
+ <source>Report Bug Dialog</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="32"/>
+ <source>Generated bug report to complete and paste in the :</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="39"/>
+ <source><html><head/><body><p><br/></p></body></html></source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="74"/>
+ <source>Close</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/BugReportDialog.ui" line="81"/>
+ <source>Copy to Clilpboard</source>
+ <translation type="unfinished"></translation>
</message>
+</context>
+<context>
+ <name>ChangeLanguage</name>
<message>
<location filename="../../ChangeLanguage.cpp" line="145"/>
<source>Information</source>
<translation></translation>
</message>
+ <message>
+ <location filename="../../ChangeLanguage.cpp" line="145"/>
+ <source>To apply translation, restart the application !</source>
+ <translation>Pour appliquer la traduction, redémarrer votre application !</translation>
+ </message>
</context>
<context>
<name>ClearSelectionAction</name>
@@ -76,6 +104,11 @@
<context>
<name>CloseAllAction</name>
<message>
+ <location filename="../../CloseAllAction.cpp" line="59"/>
+ <source>Closing all the documents...</source>
+ <translation>Fermeture de tous les documents ...</translation>
+ </message>
+ <message>
<source>Close all components, prompting for additional information if needed</source>
<translation type="obsolete">Fermer tous les components </translation>
</message>
@@ -83,11 +116,6 @@
<source>Close</source>
<translation type="obsolete">Fermer</translation>
</message>
- <message>
- <location filename="../../CloseAllAction.cpp" line="59"/>
- <source>Closing all the documents...</source>
- <translation>Fermeture de tous les documents ...</translation>
- </message>
</context>
<context>
<name>OpenAction</name>
@@ -458,4 +486,17 @@
<translation>Ctrl+3</translation>
</message>
</context>
+<context>
+ <name>ReportBugDialog</name>
+ <message>
+ <location filename="../../../../src/sdk/actions/application/ReportBugDialog.cpp" line="40"/>
+ <source><a href='https://bugzilla-timc.imag.fr/'>Bugzilla Bug Report Tool</a></source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../../../Dev/CamiTK/camitk/sdk/actions/application/ReportBugDialog.cpp" line="63"/>
+ <source><b><font color='red'>Impossible to load </source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
</TS>
diff --git a/sdk/actions/frame/editframes/CMakeLists.txt b/sdk/actions/frame/editframes/CMakeLists.txt
new file mode 100644
index 0000000..655b610
--- /dev/null
+++ b/sdk/actions/frame/editframes/CMakeLists.txt
@@ -0,0 +1,9 @@
+# Call CamiTK CMake Macro to define the action
+
+camitk_extension(ACTION_EXTENSION
+ TEST_APPLICATION ${APPLICATION_TEST_ACTION}
+ TEST_FILES
+ CEP_NAME SDK
+ DESCRIPTION "Allows one to change a component position and orientation by changing its frame."
+)
+
diff --git a/sdk/actions/frame/editframes/DisplayFrame.cpp b/sdk/actions/frame/editframes/DisplayFrame.cpp
new file mode 100644
index 0000000..70f23b1
--- /dev/null
+++ b/sdk/actions/frame/editframes/DisplayFrame.cpp
@@ -0,0 +1,82 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// Local
+#include "DisplayFrame.h"
+
+// CamiTK
+#include <InteractiveViewer.h>
+#include <Component.h>
+#include <Property.h>
+
+// vtk
+#include <vtkAxesActor.h>
+
+using namespace camitk;
+
+// --------------- constructor -------------------
+DisplayFrame::DisplayFrame(ActionExtension* extension) : Action(extension) {
+ setName("Display Component Frame");
+ setDescription(tr("This action shows/hides the axes representing the component's frame."));
+ setComponent("Component");
+
+ // Setting classification family and tags
+ setFamily("Frame");
+ addTag(tr("Test"));
+ addTag(tr("Display"));
+ addTag(tr("Visualization"));
+
+ Property * viewFrame = new Property("Display Component's Frame", false, tr("Display or not the local Component's Frame Axes in the 3D viewer"), "");
+ addParameter(viewFrame);
+
+ Property * frameSize = new Property("Scale Frame Axes", QVariant(1.0), tr("Axes size"), "viewer unit");
+ addParameter(frameSize);
+
+}
+
+
+// --------------- destructor -------------------
+DisplayFrame::~DisplayFrame() {
+}
+
+//--------------- apply ------------
+Action::ApplyStatus DisplayFrame::apply() {
+ bool view = property("Display Component's Frame").toBool();
+ double size = property("Scale Frame Axes").toDouble();
+
+ Component * inputComp = dynamic_cast<Component *> (getTargets().last());
+
+ if (inputComp != NULL) {
+ inputComp->setFrameVisibility(InteractiveViewer::get3DViewer(), view);
+ inputComp->getFrameAxisActor()->SetTotalLength(size, size, size);
+
+ // Refresh all the used viewers
+ InteractiveViewer::get3DViewer()->refresh();
+
+ return SUCCESS;
+ }
+
+ return ABORTED;
+}
diff --git a/sdk/actions/frame/editframes/DisplayFrame.h b/sdk/actions/frame/editframes/DisplayFrame.h
new file mode 100644
index 0000000..55f6519
--- /dev/null
+++ b/sdk/actions/frame/editframes/DisplayFrame.h
@@ -0,0 +1,52 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef DISPLAYFRAME_H
+#define DISPLAYFRAME_H
+
+#include "Action.h"
+#include "Component.h"
+
+
+/** This action allows you to apply a linear transformation
+ * (translation,rotation around axes) on the top level selected Frame
+ */
+class DisplayFrame : public camitk::Action {
+ Q_OBJECT
+
+public:
+ /// the constructor
+ DisplayFrame(camitk::ActionExtension*);
+
+ /// Destructor
+ virtual ~DisplayFrame();
+
+public slots:
+ /// method called when the action is applied
+ virtual ApplyStatus apply();
+
+};
+
+#endif // DISPLAYFRAME_H
diff --git a/sdk/actions/frame/editframes/EditFrame.cpp b/sdk/actions/frame/editframes/EditFrame.cpp
new file mode 100644
index 0000000..8fd11b5
--- /dev/null
+++ b/sdk/actions/frame/editframes/EditFrame.cpp
@@ -0,0 +1,355 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// Local
+#include "EditFrame.h"
+
+// CamiTK
+#include <InteractiveViewer.h>
+#include <Log.h>
+#include <Application.h>
+#include <Component.h>
+#include <SingleImageComponent.h>
+using namespace camitk;
+
+// Qt
+#include <QFileDialog>
+#include <QTextStream>
+
+// QT DOM
+#include <QDomDocument>
+#include <QDomElement>
+#include <QDomText>
+
+// vtk
+#include <vtkUnstructuredGrid.h>
+#include <vtkPolyData.h>
+#include <vtkPointData.h>
+#include <vtkCellData.h>
+#include <vtkAlgorithmOutput.h>
+#include <vtkMatrix3x3.h>
+
+
+// --------------- constructor -------------------
+EditFrame::EditFrame(ActionExtension* extension) : Action(extension) {
+ setName("Edit Frame");
+ setDescription(tr("This action allow to edit a component's frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters."));
+ setComponent("Component");
+
+ // Setting classification family and tags
+ setFamily("Frame");
+ addTag(tr("Test"));
+ addTag(tr("Edit"));
+ addTag(tr("Move"));
+ addTag(tr("Visualization"));
+
+ dialog = NULL;
+ inputFrame = NULL;
+}
+
+
+// --------------- init -------------------
+void EditFrame::init() {
+ dialog = new QDialog();
+
+ //-- init user interface
+ ui.setupUi(dialog);
+
+ // sliders initial values
+ double bounds[6];
+ InteractiveViewer::get3DViewer()->getBounds(bounds);
+ double xLength = bounds[1] - bounds[0];
+ double yLength = bounds[3] - bounds[2];
+ double zLength = bounds[5] - bounds[4];
+ ui.tX->init(-xLength*2, + xLength*2, 0.0);
+ ui.tY->init(-yLength*2, + yLength*2, 0.0);
+ ui.tZ->init(-zLength*2, + zLength*2, 0.0);
+ ui.rX->init(-180.0, 180.0, 0.0);
+ ui.rY->init(-180.0, 180.0, 0.0);
+ ui.rZ->init(-180.0, 180.0, 0.0);
+
+ // initialize slider names
+ ui.tX->setName("X");
+ ui.tY->setName("Y");
+ ui.tZ->setName("Z");
+ ui.rX->setName(tr("Around X"));
+ ui.rY->setName(tr("Around Y"));
+ ui.rZ->setName(tr("Around Z"));
+
+ // connect everything
+ connect(ui.tX, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.tY, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.tZ, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.rX, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.rY, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.rZ, SIGNAL(valueChanged()), SLOT(apply()));
+ connect(ui.resetButton, SIGNAL(clicked()), SLOT(reset()));
+ connect(ui.loadTransformButton, SIGNAL(clicked()), SLOT(load()));
+ connect(ui.saveTransformButton, SIGNAL(clicked()), SLOT(save()));
+ connect(ui.parentFramePushButton, SIGNAL(clicked()), SLOT(changeParent()));
+}
+
+
+// --------------- destructor -------------------
+EditFrame::~EditFrame() {
+ if (dialog)
+ delete dialog;
+}
+
+// --------------- getWidget -------------------
+QWidget * EditFrame::getWidget() {
+ if (!dialog)
+ init();
+
+ // The input frame is the last one selected
+ inputFrame = getTargets().last();
+
+ // parent component list
+ ui.parentFrameComboBox->clear();
+ ui.parentFrameComboBox->addItem("World");
+ foreach(Component* comp, Application::getAllComponents()) {
+ if(comp != inputFrame)
+ ui.parentFrameComboBox->addItem(comp->getName());
+ }
+
+ // get frame's rotation
+ ui.rX->setValue(inputFrame->getTransform()->GetOrientation()[0]);
+ ui.rY->setValue(inputFrame->getTransform()->GetOrientation()[1]);
+ ui.rZ->setValue(inputFrame->getTransform()->GetOrientation()[2]);
+
+ // read translation
+ // compute translation in the rotated frame
+ vtkSmartPointer<vtkMatrix3x3> rotationMatrix = vtkSmartPointer<vtkMatrix3x3>::New();
+ rotationMatrix->Identity();
+ // isolate the rotation matrix from the transfor one
+ rotationMatrix->SetElement(0, 0, inputFrame->getTransform()->GetMatrix()->GetElement(0, 0));
+ rotationMatrix->SetElement(0, 1, inputFrame->getTransform()->GetMatrix()->GetElement(0, 1));
+ rotationMatrix->SetElement(0, 2, inputFrame->getTransform()->GetMatrix()->GetElement(0, 2));
+ rotationMatrix->SetElement(1, 0, inputFrame->getTransform()->GetMatrix()->GetElement(1, 0));
+ rotationMatrix->SetElement(1, 1, inputFrame->getTransform()->GetMatrix()->GetElement(1, 1));
+ rotationMatrix->SetElement(1, 2, inputFrame->getTransform()->GetMatrix()->GetElement(1, 2));
+ rotationMatrix->SetElement(2, 0, inputFrame->getTransform()->GetMatrix()->GetElement(2, 0));
+ rotationMatrix->SetElement(2, 1, inputFrame->getTransform()->GetMatrix()->GetElement(2, 1));
+ rotationMatrix->SetElement(2, 2, inputFrame->getTransform()->GetMatrix()->GetElement(2, 2));
+ rotationMatrix->Invert(); // which is a transpose in this case ...
+ double translation[3] = {0.0, 0.0, 0.0};
+ rotationMatrix->MultiplyPoint(inputFrame->getTransform()->GetPosition(), translation);
+
+ // set frame translation
+ ui.tX->setValue(translation[0]);
+ ui.tY->setValue(translation[1]);
+ ui.tZ->setValue(translation[2]);
+
+ apply();
+
+ return dialog;
+}
+
+//--------------- changeParent -------------
+void EditFrame::changeParent() {
+ if (inputFrame != NULL) {
+ QString parentName = ui.parentFrameComboBox->currentText();
+ if(parentName == "World") { // no parent frame ...
+ inputFrame->setParentFrame(NULL);
+ return;
+ }
+
+ // Find the corresponding component:
+ const ComponentList existingComponents = Application::getAllComponents();
+ Component * newParent = NULL;
+ int i = 0;
+ while ((i < existingComponents.size()) && (parentName != existingComponents.at(i)->getName())) {
+ i++;
+ }
+ if (i < existingComponents.size()) {
+ newParent = existingComponents.at(i);
+ }
+
+ inputFrame->setParentFrame(newParent);
+ }
+ InteractiveViewer::get3DViewer()->refresh();
+}
+
+//--------------- reset -------------
+void EditFrame::reset() {
+
+ // reset all values to 0.0
+ ui.tX->setValue(0.0);
+ ui.tY->setValue(0.0);
+ ui.tZ->setValue(0.0);
+ ui.rX->setValue(0.0);
+ ui.rY->setValue(0.0);
+ ui.rZ->setValue(0.0);
+
+ apply(); // to refresh
+}
+
+
+//--------------- apply ------------
+Action::ApplyStatus EditFrame::apply() {
+ inputFrame = dynamic_cast<Component *> (getTargets().last());
+
+ inputFrame->setTransformRotationVTK(ui.rX->getValue(), ui.rY->getValue(), ui.rZ->getValue());
+ inputFrame->setTransformTranslationVTK(ui.tX->getValue(), ui.tY->getValue(), ui.tZ->getValue());
+
+ // Refresh only 3D viewer : there is only it displaying the frame.
+ InteractiveViewer::get3DViewer()->refresh();
+
+ return SUCCESS;
+}
+
+//--------------- save ------------
+void EditFrame::save() {
+
+ QString filename = QFileDialog::getSaveFileName(NULL, tr("Save Frame File"), "/home/myFrame.frame", tr("Frames (*.frame)"));
+ QFile file(filename);
+ if (file.open(QIODevice::WriteOnly)) {
+ QTextStream stream(&file);
+ QDomDocument doc("frame");
+ QDomElement root = doc.createElement("frame");
+ root.setAttribute("name", "created frame");
+
+ QDomElement transform = doc.createElement("transform");
+ transform.setAttribute("type", "matrix");
+ vtkSmartPointer<vtkMatrix4x4> matrix = inputFrame->getTransform()->GetMatrix();
+ for (int i = 0; i < 4; i++) {
+ QDomElement line = doc.createElement("line");
+ // x
+ QDomElement xElmt = doc.createElement("x");
+ double xVal = matrix->GetElement(i, 0);
+ QDomText x = doc.createTextNode(QString::number(xVal));
+ xElmt.appendChild(x);
+ line.appendChild(xElmt);
+
+ // y
+ QDomElement yElmt = doc.createElement("y");
+ double yVal = matrix->GetElement(i, 1);
+ QDomText y = doc.createTextNode(QString::number(yVal));
+ yElmt.appendChild(y);
+ line.appendChild(yElmt);
+
+ // z
+ QDomElement zElmt = doc.createElement("z");
+ double zVal = matrix->GetElement(i, 2);
+ QDomText z = doc.createTextNode(QString::number(zVal));
+ zElmt.appendChild(z);
+ line.appendChild(zElmt);
+
+ // t
+ QDomElement tElmt = doc.createElement("t");
+ double tVal = matrix->GetElement(i, 3);
+ QDomText t = doc.createTextNode(QString::number(tVal));
+ tElmt.appendChild(t);
+ line.appendChild(tElmt);
+ transform.appendChild(line);
+ }
+
+ root.appendChild(transform);
+ doc.appendChild(root);
+ doc.save(stream, 0);
+
+ file.close();
+ }
+}
+
+//--------------- load ------------
+void EditFrame::load() {
+
+ // choose the file to open
+ QString fileName = QFileDialog::getOpenFileName(NULL, tr("Open Frame File"), "/home", tr("Frames (*.frame)"));
+ QFile file(fileName);
+ if(file.open(QIODevice::ReadOnly)) {
+ QDomDocument doc("frame");
+ if (!doc.setContent(&file)) {
+ file.close();
+ return;
+ }
+
+ // we read the file as a vtkTransform, which is better to process then
+ vtkSmartPointer<vtkTransform> transformation = vtkSmartPointer<vtkTransform>::New();
+ transformation->Identity();
+ vtkSmartPointer<vtkMatrix4x4> matrix = transformation->GetMatrix();
+
+ // QDomElement docElem = doc.documentElement();
+ QDomNode transformNode = doc.firstChild();
+
+ if(!transformNode.isNull()) {
+ QDomNodeList lines = doc.elementsByTagName("line");
+ if(lines.length() != 4) {
+ CAMITK_ERROR("MoveFrame", "load", "Number of XML line elements should be exactly 4.");
+ return;
+ }
+
+ for (int i = 0; i < 4; i++) {
+ QDomNode line = lines.at(i);
+ if(line.childNodes().length() != 4) {
+ CAMITK_ERROR("MoveFrame", "load", "XML line elements should be have exactly 4 children.");
+ return;
+ }
+ for(int j = 0; j < 4; j++) {
+ double value = line.childNodes().at(j).firstChild().nodeValue().toDouble();
+ matrix->SetElement(i, j, value);
+ }
+ }
+ }
+
+ file.close();
+
+ // read rotation
+ double * rotationAngles = transformation->GetOrientation();
+ ui.rX->setValue(rotationAngles[0]);
+ ui.rY->setValue(rotationAngles[1]);
+ ui.rZ->setValue(rotationAngles[2]);
+
+ // read translation
+ // compute translation in the rotated frame
+ vtkSmartPointer<vtkMatrix3x3> rotationMatrix = vtkSmartPointer<vtkMatrix3x3>::New();
+ rotationMatrix->Identity();
+ // isolate the rotation matrix from the transform one
+ rotationMatrix->SetElement(0, 0, transformation->GetMatrix()->GetElement(0, 0));
+ rotationMatrix->SetElement(0, 1, transformation->GetMatrix()->GetElement(0, 1));
+ rotationMatrix->SetElement(0, 2, transformation->GetMatrix()->GetElement(0, 2));
+ rotationMatrix->SetElement(1, 0, transformation->GetMatrix()->GetElement(1, 0));
+ rotationMatrix->SetElement(1, 1, transformation->GetMatrix()->GetElement(1, 1));
+ rotationMatrix->SetElement(1, 2, transformation->GetMatrix()->GetElement(1, 2));
+ rotationMatrix->SetElement(2, 0, transformation->GetMatrix()->GetElement(2, 0));
+ rotationMatrix->SetElement(2, 1, transformation->GetMatrix()->GetElement(2, 1));
+ rotationMatrix->SetElement(2, 2, transformation->GetMatrix()->GetElement(2, 2));
+ rotationMatrix->Invert(); // which is a transpose in this case ...
+ double translation[3] = {0.0, 0.0, 0.0};
+ rotationMatrix->MultiplyPoint(transformation->GetPosition(), translation);
+
+ // get it back in the widget
+ ui.tX->setValue(translation[0]);
+ ui.tY->setValue(translation[1]);
+ ui.tZ->setValue(translation[2]);
+
+ // refresh the widget
+ apply();
+ }
+
+
+
+}
diff --git a/sdk/actions/frame/editframes/EditFrame.h b/sdk/actions/frame/editframes/EditFrame.h
new file mode 100644
index 0000000..177c2e7
--- /dev/null
+++ b/sdk/actions/frame/editframes/EditFrame.h
@@ -0,0 +1,98 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef EDITFRAME_H
+#define EDITFRAME_H
+
+#include "Action.h"
+#include "Component.h"
+
+#include <QVector3D>
+
+#include <vtkTransform.h>
+#include <vtkTransformFilter.h>
+#include <vtkSmartPointer.h>
+
+#include "ui_MoveFrame.h"
+
+/** This action allows you to apply a linear transformation
+ * (translation,rotation around axes) on the top level selected Frame
+ */
+class EditFrame : public camitk::Action {
+ Q_OBJECT
+
+public:
+ /// the constructor
+ EditFrame(camitk::ActionExtension*);
+
+ /// Destructor
+ virtual ~EditFrame();
+
+ /// this method creates and returns the widget containing the user interface for the action
+ virtual QWidget * getWidget();
+
+public slots:
+ /**
+ * Update the component's frame with the translation and rotation parameters of the widget.
+ * This keeps synchronized the frame with the value selected by the user
+ */
+ virtual ApplyStatus apply();
+
+ /**
+ * Save the current frame to a file.
+ */
+ virtual void save();
+
+ /**
+ * Load a frame description from a file.
+ **/
+ virtual void load();
+
+ /**
+ * Change the current frame's parent.
+ */
+ virtual void changeParent();
+
+private slots:
+
+ /// slot called when reset is ckicked, reset the transformation to Identity
+ void reset();
+
+private:
+ /// initialize the dialog
+ void init();
+
+ /// the Qt Gui
+ Ui::MoveFrame ui;
+
+ /// the dialog
+ QDialog *dialog;
+
+ /// the component's frame we work on
+ camitk::Component * inputFrame;
+
+};
+
+#endif // EDITFRAME_H
diff --git a/sdk/actions/frame/editframes/MoveFrame.ui b/sdk/actions/frame/editframes/MoveFrame.ui
new file mode 100644
index 0000000..b755bf8
--- /dev/null
+++ b/sdk/actions/frame/editframes/MoveFrame.ui
@@ -0,0 +1,320 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>MoveFrame</class>
+ <widget class="QDialog" name="MoveFrame">
+ <property name="enabled">
+ <bool>true</bool>
+ </property>
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>686</width>
+ <height>566</height>
+ </rect>
+ </property>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="MinimumExpanding" vsizetype="MinimumExpanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="windowTitle">
+ <string>Rigid Transformation</string>
+ </property>
+ <property name="windowIconText">
+ <string>TransformDialog</string>
+ </property>
+ <property name="sizeGripEnabled">
+ <bool>true</bool>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_5">
+ <item>
+ <widget class="QScrollArea" name="scrollArea">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="widgetResizable">
+ <bool>true</bool>
+ </property>
+ <widget class="QWidget" name="scrollAreaWidgetContents">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>664</width>
+ <height>302</height>
+ </rect>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_6">
+ <item>
+ <widget class="QLabel" name="label">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Ignored" vsizetype="Ignored">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="text">
+ <string><html><head/><body><p><span style=" font-weight:600;">Description:</span> This action allows you to edit the selected component's frame. </p><p>Remember a frame is a 3D space transform represented as a 4x4 matrix in homogeneous coordinates, which stands for the 3D position and orientation of the component relatively to its frame parent component.</p><p>Given a frame, we apply first the rotation then t [...]
+ </property>
+ <property name="wordWrap">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="parentFrameLayout">
+ <item>
+ <widget class="QLabel" name="parentFrameLabel">
+ <property name="text">
+ <string>Parent Frame Component</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QComboBox" name="parentFrameComboBox"/>
+ </item>
+ <item>
+ <widget class="QPushButton" name="parentFramePushButton">
+ <property name="text">
+ <string>Set Parent Frame</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout">
+ <item>
+ <widget class="QScrollArea" name="scrollArea_2">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="widgetResizable">
+ <bool>true</bool>
+ </property>
+ <widget class="QWidget" name="scrollAreaWidgetContents_2">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>662</width>
+ <height>122</height>
+ </rect>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_7">
+ <item>
+ <layout class="QHBoxLayout" name="textSliders">
+ <item>
+ <widget class="QGroupBox" name="translationBox">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="title">
+ <string>Translation</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_2">
+ <item>
+ <widget class="camitk::SliderTextWidget" name="tX" native="true"/>
+ </item>
+ <item>
+ <widget class="camitk::SliderTextWidget" name="tY" native="true"/>
+ </item>
+ <item>
+ <widget class="camitk::SliderTextWidget" name="tZ" native="true"/>
+ </item>
+ <item>
+ <spacer name="verticalSpacer">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout"/>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <widget class="QGroupBox" name="rotationBox">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="title">
+ <string>Rotation</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <widget class="camitk::SliderTextWidget" name="rX" native="true"/>
+ </item>
+ <item>
+ <widget class="camitk::SliderTextWidget" name="rY" native="true"/>
+ </item>
+ <item>
+ <widget class="camitk::SliderTextWidget" name="rZ" native="true"/>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_2"/>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_3">
+ <item>
+ <spacer name="horizontalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="resetButton">
+ <property name="toolTip">
+ <string>Reset all fields to 0.0</string>
+ </property>
+ <property name="text">
+ <string>Reset</string>
+ </property>
+ <property name="autoDefault">
+ <bool>false</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_4">
+ <property name="sizeConstraint">
+ <enum>QLayout::SetDefaultConstraint</enum>
+ </property>
+ <item>
+ <spacer name="horizontalSpacer_4">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="saveTransformButton">
+ <property name="text">
+ <string>Save Transform</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="loadTransformButton">
+ <property name="text">
+ <string>Load Transform</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_5">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <layoutdefault spacing="6" margin="11"/>
+ <customwidgets>
+ <customwidget>
+ <class>camitk::SliderTextWidget</class>
+ <extends>QWidget</extends>
+ <header>SliderTextWidget.h</header>
+ </customwidget>
+ </customwidgets>
+ <includes>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ <include location="local">SliderTextWidget.h</include>
+ </includes>
+ <resources/>
+ <connections/>
+</ui>
diff --git a/sdk/actions/frame/editframes/TestFrameExtension.cpp b/sdk/actions/frame/editframes/TestFrameExtension.cpp
new file mode 100644
index 0000000..365b674
--- /dev/null
+++ b/sdk/actions/frame/editframes/TestFrameExtension.cpp
@@ -0,0 +1,38 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#include "TestFrameExtension.h"
+
+// include generated actions headers
+#include "EditFrame.h"
+#include "DisplayFrame.h"
+
+// --------------- getActions -------------------
+void TestFrameExtension::init() {
+ // Creating and registering the instance of MoveFrame
+ registerNewAction(EditFrame);
+
+ registerNewAction(DisplayFrame);
+}
+
diff --git a/sdk/actions/frame/editframes/TestFrameExtension.h b/sdk/actions/frame/editframes/TestFrameExtension.h
new file mode 100644
index 0000000..d4d8c20
--- /dev/null
+++ b/sdk/actions/frame/editframes/TestFrameExtension.h
@@ -0,0 +1,59 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#ifndef TESTFRAMEEXTENSION_H
+#define TESTFRAMEEXTENSION_H
+
+#include <ActionExtension.h>
+
+class TestFrameExtension : public camitk::ActionExtension {
+ Q_OBJECT
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.editframes")
+
+public:
+ /// Constructor
+ TestFrameExtension() : ActionExtension() {}
+
+ /// Destructor
+ virtual ~TestFrameExtension() {}
+
+ /// Method returning the action extension name
+ virtual QString getName() {
+ return "TestFrame";
+ };
+
+ /// Method returning the action extension descrption
+ virtual QString getDescription() {
+ return "This extension can be used to test and get familiar with the frame environment.";
+ };
+
+ /// initialize all the actions
+ virtual void init();
+
+};
+
+#endif // TESTFRAMEEXTENSION_H
+
+
diff --git a/sdk/actions/frame/editframes/resources/translate/translate_en.ts b/sdk/actions/frame/editframes/resources/translate/translate_en.ts
new file mode 100644
index 0000000..269e919
--- /dev/null
+++ b/sdk/actions/frame/editframes/resources/translate/translate_en.ts
@@ -0,0 +1,208 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="en_US">
+<context>
+ <name>DisplayFrame</name>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="42"/>
+ <source>This action shows/hides the axes representing the component's frame.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="47"/>
+ <source>Test</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="48"/>
+ <source>Display</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="49"/>
+ <source>Visualization</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="51"/>
+ <source>Display or not the local Component's Frame Axes in the 3D viewer</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="54"/>
+ <source>Axes size</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>EditFrame</name>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="58"/>
+ <source>This action allow to edit a component's frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="63"/>
+ <source>Test</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="64"/>
+ <source>Edit</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="65"/>
+ <source>Move</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="66"/>
+ <source>Visualization</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="97"/>
+ <source>Around X</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="98"/>
+ <source>Around Y</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="99"/>
+ <source>Around Z</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="280"/>
+ <source>Open Frame File</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>MoveFrame</name>
+ <message>
+ <location filename="../../MoveFrame.ui" line="23"/>
+ <source>Rigid Transformation</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="26"/>
+ <source>TransformDialog</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="69"/>
+ <source>Translate</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="244"/>
+ <source>Parent Frame Component</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="151"/>
+ <source>Set Rotation</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../../../../Dev/CamiTK/camitk/sdk/actions/frame/editframes/MoveFrame.ui" line="278"/>
+ <source>Load Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="168"/>
+ <source>Rotation</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="225"/>
+ <source>Reset all fields to 0.0</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="228"/>
+ <source>Reset</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="220"/>
+ <source>Save Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="278"/>
+ <source>Load Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="225"/>
+ <source>Reset all fields to 0.0</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="228"/>
+ <source>Reset</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="271"/>
+ <source>Save Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="278"/>
+ <source>Load Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="57"/>
+ <source>This action allow to move a frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="62"/>
+ <source>Test</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="63"/>
+ <source>Move</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="64"/>
+ <source>Visualization</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="84"/>
+ <source>Around X</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="85"/>
+ <source>Around Y</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="86"/>
+ <source>Around Z</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.cpp" line="64"/>
+ <source>Edit</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.cpp" line="280"/>
+ <source>Open Frame File</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+</TS>
diff --git a/sdk/actions/frame/editframes/resources/translate/translate_fr.ts b/sdk/actions/frame/editframes/resources/translate/translate_fr.ts
new file mode 100644
index 0000000..16c2a57
--- /dev/null
+++ b/sdk/actions/frame/editframes/resources/translate/translate_fr.ts
@@ -0,0 +1,212 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!DOCTYPE TS>
+<TS version="2.0" language="fr_FR">
+<context>
+ <name>DisplayFrame</name>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="42"/>
+ <source>This action shows/hides the axes representing the component's frame.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="47"/>
+ <source>Test</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="48"/>
+ <source>Display</source>
+ <translation>Afficher</translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="49"/>
+ <source>Visualization</source>
+ <translation>Visualisation</translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="51"/>
+ <source>Display or not the local Component's Frame Axes in the 3D viewer</source>
+ <translation>Afficher ou pas les Axes du Cadre de Component local dans l'afficheur 3D</translation>
+ </message>
+ <message>
+ <location filename="../../DisplayFrame.cpp" line="54"/>
+ <source>Axes size</source>
+ <translation>Taille des Axes</translation>
+ </message>
+ <message>
+ <source>This action allows to display/hide a component frame's axes.</source>
+ <translation type="obsolete">Cette action permet d'afficher/cacher les axes des cadres de component.</translation>
+ </message>
+</context>
+<context>
+ <name>EditFrame</name>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="58"/>
+ <source>This action allow to edit a component's frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="63"/>
+ <source>Test</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="64"/>
+ <source>Edit</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="65"/>
+ <source>Move</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="66"/>
+ <source>Visualization</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="97"/>
+ <source>Around X</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="98"/>
+ <source>Around Y</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="99"/>
+ <source>Around Z</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/EditFrame.cpp" line="280"/>
+ <source>Open Frame File</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>MoveFrame</name>
+ <message>
+ <location filename="../../MoveFrame.ui" line="23"/>
+ <source>Rigid Transformation</source>
+ <translation>Transformation Rigide</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="26"/>
+ <source>TransformDialog</source>
+ <translation>Transform Dialogue</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="69"/>
+ <source>Translate</source>
+ <translation>Translater</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="131"/>
+ <source>Rotate</source>
+ <translation>Rotationner</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="151"/>
+ <source>Set Rotation</source>
+ <translation>Initialiser Rotation</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="39"/>
+ <source>Translation</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="168"/>
+ <source>Rotation</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="225"/>
+ <source>Reset all fields to 0.0</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="228"/>
+ <source>Reset</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.ui" line="220"/>
+ <source>Save Transform</source>
+ <translation>Sauver Transform</translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="278"/>
+ <source>Load Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="225"/>
+ <source>Reset all fields to 0.0</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="228"/>
+ <source>Reset</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="271"/>
+ <source>Save Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.ui" line="278"/>
+ <source>Load Transform</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="57"/>
+ <source>This action allow to move a frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
+ <translation>Cette action permet de déplacer un cadre depuis le cadre parent (ou le cadre world si il n'a pas de parent) en initialisant les paramètres de translation et de rotation.</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="62"/>
+ <source>Test</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="63"/>
+ <source>Move</source>
+ <translation>Déplacer</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="64"/>
+ <source>Visualization</source>
+ <translation>Visualisation</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="84"/>
+ <source>Around X</source>
+ <translation>Autour de X</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="85"/>
+ <source>Around Y</source>
+ <translation>Autour de Y</translation>
+ </message>
+ <message>
+ <location filename="../../MoveFrame.cpp" line="86"/>
+ <source>Around Z</source>
+ <translation>Autour de Z</translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.cpp" line="64"/>
+ <source>Edit</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../src/sdk/actions/frame/editframes/MoveFrame.cpp" line="280"/>
+ <source>Open Frame File</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+</TS>
diff --git a/sdk/actions/frame/moveframes/CMakeLists.txt b/sdk/actions/frame/moveframes/CMakeLists.txt
deleted file mode 100644
index 909d848..0000000
--- a/sdk/actions/frame/moveframes/CMakeLists.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-# Call CamiTK CMake Macro to define the action
-
-camitk_extension(ACTION_EXTENSION
- TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES
-)
-
diff --git a/sdk/actions/frame/moveframes/DisplayFrame.cpp b/sdk/actions/frame/moveframes/DisplayFrame.cpp
deleted file mode 100644
index a45518b..0000000
--- a/sdk/actions/frame/moveframes/DisplayFrame.cpp
+++ /dev/null
@@ -1,82 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// Local
-#include "DisplayFrame.h"
-
-// CamiTK
-#include <InteractiveViewer.h>
-#include <Component.h>
-#include <Property.h>
-
-// vtk
-#include <vtkAxesActor.h>
-
-using namespace camitk;
-
-// --------------- constructor -------------------
-DisplayFrame::DisplayFrame(ActionExtension* extension) : Action(extension) {
- setName("Display Component Frame");
- setDescription(tr("This action allows to display/hide a component frame's axes."));
- setComponent("Component");
-
- // Setting classification family and tags
- setFamily("Frame");
- addTag(tr("Test"));
- addTag(tr("Display"));
- addTag(tr("Visualization"));
-
- Property * viewFrame = new Property("Display Component's Frame", false, tr("Display or not the local Component's Frame Axes in the 3D viewer"), "");
- addParameter(viewFrame);
-
- Property * frameSize = new Property("Scale Frame Axes", QVariant(1.0), tr("Axes size"), "viewer unit");
- addParameter(frameSize);
-
-}
-
-
-// --------------- destructor -------------------
-DisplayFrame::~DisplayFrame() {
-}
-
-//--------------- apply ------------
-Action::ApplyStatus DisplayFrame::apply() {
- bool view = property("Display Component's Frame").toBool();
- double size = property("Scale Frame Axes").toDouble();
-
- Component * inputComp = dynamic_cast<Component *> (getTargets().last());
-
- if (inputComp != NULL) {
- inputComp->setFrameVisibility(InteractiveViewer::get3DViewer(), view);
- inputComp->getFrameAxisActor()->SetTotalLength(size, size, size);
-
- // Refresh all the used viewers
- InteractiveViewer::get3DViewer()->refresh();
-
- return SUCCESS;
- }
-
- return ABORTED;
-}
diff --git a/sdk/actions/frame/moveframes/DisplayFrame.h b/sdk/actions/frame/moveframes/DisplayFrame.h
deleted file mode 100644
index 5bec2f7..0000000
--- a/sdk/actions/frame/moveframes/DisplayFrame.h
+++ /dev/null
@@ -1,52 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef DISPLAYFRAME_H
-#define DISPLAYFRAME_H
-
-#include "Action.h"
-#include "Component.h"
-
-
-/** This action allows you to apply a linear transformation
- * (translation,rotation around axes) on the top level selected Frame
- */
-class DisplayFrame : public camitk::Action {
- Q_OBJECT
-
-public:
- /// the constructor
- DisplayFrame(camitk::ActionExtension*);
-
- /// Destructor
- virtual ~DisplayFrame();
-
-public slots:
- /// method called when the action is applied
- virtual ApplyStatus apply();
-
-};
-
-#endif // DISPLAYFRAME_H
diff --git a/sdk/actions/frame/moveframes/MoveFrame.cpp b/sdk/actions/frame/moveframes/MoveFrame.cpp
deleted file mode 100644
index 1dcabd3..0000000
--- a/sdk/actions/frame/moveframes/MoveFrame.cpp
+++ /dev/null
@@ -1,324 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// Local
-#include "MoveFrame.h"
-
-// CamiTK
-#include <InteractiveViewer.h>
-#include <Log.h>
-#include <Application.h>
-#include <Component.h>
-#include <SingleImageComponent.h>
-using namespace camitk;
-
-// Qt
-#include <QFileDialog>
-#include <QTextStream>
-
-// QT DOM
-#include <QDomDocument>
-#include <QDomElement>
-#include <QDomText>
-
-// vtk
-#include <vtkUnstructuredGrid.h>
-#include <vtkPolyData.h>
-#include <vtkPointData.h>
-#include <vtkCellData.h>
-#include <vtkAlgorithmOutput.h>
-
-
-// --------------- constructor -------------------
-MoveFrame::MoveFrame(ActionExtension* extension) : Action(extension) {
- setName("Move Frame");
- setDescription(tr("This action allow to move a frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters."));
- setComponent("Component");
-
- // Setting classification family and tags
- setFamily("Frame");
- addTag(tr("Test"));
- addTag(tr("Move"));
- addTag(tr("Visualization"));
-
- dialog = NULL;
- inputFrame = NULL;
-}
-
-
-// --------------- init -------------------
-void MoveFrame::init() {
- dialog = new QDialog();
-
- transformation = vtkTransform::New();
-
- //-- init user interface
- ui.setupUi(dialog);
-
- // initialize slider names
- ui.tX->setName("X");
- ui.tY->setName("Y");
- ui.tZ->setName("Z");
- ui.rX->setName(tr("Around X"));
- ui.rY->setName(tr("Around Y"));
- ui.rZ->setName(tr("Around Z"));
-
- // connect everything
- connect(ui.translatePushButton, SIGNAL(clicked()), SLOT(translate()));
- connect(ui.setTranslationPushButton, SIGNAL(clicked()), SLOT(setTranslation()));
- connect(ui.rotatePushButton, SIGNAL(clicked()), SLOT(rotate()));
- connect(ui.setRotationPushButton, SIGNAL(clicked()), SLOT(setRotation()));
- connect(ui.resetButton, SIGNAL(clicked()), SLOT(reset()));
- connect(ui.setTransformButton, SIGNAL(clicked()), SLOT(apply()));
- connect(ui.savePushButton, SIGNAL(clicked()), SLOT(save()));
- connect(ui.parentFramePushButton, SIGNAL(clicked()), SLOT(changeParent()));
-
-}
-
-
-// --------------- destructor -------------------
-MoveFrame::~MoveFrame() {
- if (dialog) {
- delete dialog;
- }
-}
-
-// --------------- getWidget -------------------
-QWidget * MoveFrame::getWidget() {
- if (!dialog)
- init();
-
- inputFrame = dynamic_cast<Component *> (getTargets().last());
- vtkSmartPointer<vtkTransform> initialTransform = inputFrame->getTransform();
-
- initialPosition.setX(initialTransform->GetPosition()[0]);
- initialPosition.setY(initialTransform->GetPosition()[1]);
- initialPosition.setZ(initialTransform->GetPosition()[2]);
-
- initialOrientation.setX(initialTransform->GetOrientation()[0]);
- initialOrientation.setY(initialTransform->GetOrientation()[1]);
- initialOrientation.setZ(initialTransform->GetOrientation()[2]);
-
- // disconnect and reset previous state
- reset();
-
- return dialog;
-}
-
-void MoveFrame::changeParent() {
- if (inputFrame != NULL) {
- QString parentName = ui.parentFrameComboBox->currentText();
- // Find the corresponding component:
- const ComponentList existingComponents = Application::getAllComponents();
- Component * newParent = NULL;
- int i = 0;
- while ((i < existingComponents.size()) && (parentName != existingComponents.at(i)->getName())) {
- i++;
- }
- if (i < existingComponents.size()) {
- newParent = existingComponents.at(i);
- }
-
- inputFrame->setParentFrame(newParent);
- }
- InteractiveViewer::get3DViewer()->refresh();
-}
-
-//--------------- reset -------------
-void MoveFrame::reset() {
- //-- initialize the transformation to Identity
- transformation->Identity();
- transformation->RotateX(initialOrientation.x());
- transformation->RotateY(initialOrientation.y());
- transformation->RotateZ(initialOrientation.z());
- transformation->Translate(initialPosition.x(), initialPosition.y(), initialPosition.z());
-
- //-- init values
- double bounds[6];
- InteractiveViewer::get3DViewer()->getBounds(bounds);
- double xLength = bounds[1] - bounds[0];
- double yLength = bounds[3] - bounds[2];
- double zLength = bounds[5] - bounds[4];
- ui.tX->init(-xLength, + xLength, initialPosition.x());
- ui.tY->init(-yLength, + yLength, initialPosition.y());
- ui.tZ->init(-zLength, + zLength, initialPosition.z());
- ui.rX->init(-180.0, 180.0, initialOrientation.x());
- ui.rY->init(-180.0, 180.0, initialOrientation.y());
- ui.rZ->init(-180.0, 180.0, initialOrientation.z());
-
- //-- Fill in the Possible Parent Frame Components ComboBox
- ui.parentFrameComboBox->clear();
- QStringList possibleParentFrames;
- possibleParentFrames << "World Frame";
- const ComponentList existingComponents = Application::getAllComponents();
- for (int i = 0; i < existingComponents.size(); i++) {
- Component * c = existingComponents.at(i);
- if( c ) {
- SingleImageComponent * csi = dynamic_cast<SingleImageComponent *>( c );
- if( csi ) {
- //do nothing
- //A singleImageComponent cannot be a parent frame, it is always a frame child of another frame.
- } else {
- possibleParentFrames << c->getName();
- }
- }
- }
- ui.parentFrameComboBox->addItems(possibleParentFrames);
-
- if (inputFrame != NULL) {
- Component * currentParentComponent = dynamic_cast<Component *> (inputFrame->getParentFrame());
-
- if (currentParentComponent == NULL) {
- ui.parentFrameComboBox->setCurrentIndex(0);
- } else {
- ui.parentFrameComboBox->setCurrentIndex(possibleParentFrames.indexOf(currentParentComponent->getName()));
- }
- }
-}
-
-
-//--------------- apply ------------
-Action::ApplyStatus MoveFrame::apply() {
- inputFrame = dynamic_cast<Component *> (getTargets().last());
- transformation->Identity();
-
- //-- Set the Rotation
- transformation->RotateX(double(ui.rX->getValue()));
- transformation->RotateY(double(ui.rY->getValue()));
- transformation->RotateZ(double(ui.rZ->getValue()));
-
- //-- Set the Translation
- transformation->Translate(double(ui.tX->getValue()), double(ui.tY->getValue()), double(ui.tZ->getValue()));
-
- inputFrame->setTransform(transformation);
-
- // Refresh all the used viewers
-// InteractiveViewer::get3DViewer()->refresh();
- Application::refresh();
-
- return SUCCESS;
-}
-
-
-void MoveFrame::translate() {
- QVector3D trans;
- trans.setX(double (ui.tX->getValue()));
- trans.setY(double (ui.tY->getValue()));
- trans.setZ(double (ui.tZ->getValue()));
-
- inputFrame->translate(trans.x(), trans.y(), trans.z());
-}
-
-void MoveFrame::setTranslation() {
- QVector3D trans;
- trans.setX(double (ui.tX->getValue()));
- trans.setY(double (ui.tY->getValue()));
- trans.setZ(double (ui.tZ->getValue()));
-
- inputFrame->setTransformTranslation(trans.x(), trans.y(), trans.z());
-}
-
-void MoveFrame::rotate() {
- QVector3D rot;
- rot.setX(double (ui.rX->getValue()));
- rot.setY(double (ui.rY->getValue()));
- rot.setZ(double (ui.rZ->getValue()));
-
- inputFrame->rotate(rot.x(), rot.y(), rot.z());
-
-}
-void MoveFrame::setRotation() {
- QVector3D rot;
- rot.setX(double (ui.rX->getValue()));
- rot.setY(double (ui.rY->getValue()));
- rot.setZ(double (ui.rZ->getValue()));
-
- inputFrame->setTransformRotation(rot.x(), rot.y(), rot.z());
-}
-
-
-void MoveFrame::save() {
- transformation->Identity();
-
- //-- Set the Rotation
- transformation->RotateX(double(ui.rX->getValue()));
- transformation->RotateY(double(ui.rY->getValue()));
- transformation->RotateZ(double(ui.rZ->getValue()));
-
- //-- Set the Translation
- transformation->Translate(double(ui.tX->getValue()), double(ui.tY->getValue()), double(ui.tZ->getValue()));
-
-
- QString filename = QFileDialog::getSaveFileName(NULL, "Save file");
- QFile file(filename);
- if (file.open(QIODevice::WriteOnly)) {
- QTextStream stream(&file);
- QDomDocument doc("frame");
- QDomElement root = doc.createElement("frame");
- root.setAttribute("name", "created frame");
-
- QDomElement transform = doc.createElement("transform");
- transform.setAttribute("type", "matrix");
- vtkSmartPointer<vtkMatrix4x4> matrix = transformation->GetMatrix();
- for (int i = 0; i < 4; i++) {
- QDomElement line = doc.createElement("line");
- // x
- QDomElement xElmt = doc.createElement("x");
- double xVal = matrix->GetElement(i, 0);
- QDomText x = doc.createTextNode(QString::number(xVal));
- xElmt.appendChild(x);
- line.appendChild(xElmt);
-
- // y
- QDomElement yElmt = doc.createElement("y");
- double yVal = matrix->GetElement(i, 1);
- QDomText y = doc.createTextNode(QString::number(yVal));
- yElmt.appendChild(y);
- line.appendChild(yElmt);
-
- // z
- QDomElement zElmt = doc.createElement("z");
- double zVal = matrix->GetElement(i, 2);
- QDomText z = doc.createTextNode(QString::number(zVal));
- zElmt.appendChild(z);
- line.appendChild(zElmt);
-
- // t
- QDomElement tElmt = doc.createElement("t");
- double tVal = matrix->GetElement(i, 3);
- QDomText t = doc.createTextNode(QString::number(tVal));
- tElmt.appendChild(t);
- line.appendChild(tElmt);
- transform.appendChild(line);
- }
-
- root.appendChild(transform);
- doc.appendChild(root);
- doc.save(stream, 0);
-
- file.close();
- }
-
-}
diff --git a/sdk/actions/frame/moveframes/MoveFrame.h b/sdk/actions/frame/moveframes/MoveFrame.h
deleted file mode 100644
index b5bd175..0000000
--- a/sdk/actions/frame/moveframes/MoveFrame.h
+++ /dev/null
@@ -1,97 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-#ifndef MOVEFRAME_H
-#define MOVEFRAME_H
-
-#include "Action.h"
-#include "Component.h"
-
-#include <QVector3D>
-
-#include <vtkTransform.h>
-#include <vtkTransformFilter.h>
-#include <vtkSmartPointer.h>
-
-#include "ui_MoveFrame.h"
-
-
-/** This action allows you to apply a linear transformation
- * (translation,rotation around axes) on the top level selected Frame
- */
-class MoveFrame : public camitk::Action {
- Q_OBJECT
-
-public:
- /// the constructor
- MoveFrame(camitk::ActionExtension*);
-
- /// Destructor
- virtual ~MoveFrame();
-
- /// this method creates and returns the widget containing the user interface for the action
- virtual QWidget * getWidget();
-
-public slots:
- /// method called when the action is applied
- virtual ApplyStatus apply();
-
- virtual void translate();
- virtual void setTranslation();
- virtual void rotate();
- virtual void setRotation();
- virtual void save();
- virtual void changeParent();
-
-private slots:
-
- /// slot called when reset is ckicked, reset the transformation to Identity
- void reset();
-
-private:
- /// initialize the dialog
- void init();
-
- /// current transformation
- vtkTransform * transformation;
-
- /// initial transformation
- QVector3D initialPosition;
- QVector3D initialOrientation;
-
- /// current transform filters (one per selected object)
-// QList< vtkSmartPointer<vtkTransformFilter> > filterList;
-
- /// the Qt Gui
- Ui::MoveFrame ui;
-
- /// the dialog
- QDialog *dialog;
-
- camitk::Component * inputFrame;
-
-};
-
-#endif // MOVEFRAME_H
diff --git a/sdk/actions/frame/moveframes/MoveFrame.ui b/sdk/actions/frame/moveframes/MoveFrame.ui
deleted file mode 100644
index cf00dd3..0000000
--- a/sdk/actions/frame/moveframes/MoveFrame.ui
+++ /dev/null
@@ -1,283 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>MoveFrame</class>
- <widget class="QDialog" name="MoveFrame">
- <property name="enabled">
- <bool>true</bool>
- </property>
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>652</width>
- <height>315</height>
- </rect>
- </property>
- <property name="sizePolicy">
- <sizepolicy hsizetype="MinimumExpanding" vsizetype="MinimumExpanding">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="windowTitle">
- <string>Rigid Transformation</string>
- </property>
- <property name="windowIconText">
- <string>TransformDialog</string>
- </property>
- <property name="sizeGripEnabled">
- <bool>true</bool>
- </property>
- <layout class="QGridLayout">
- <item row="1" column="0">
- <layout class="QVBoxLayout" name="verticalLayout">
- <item>
- <layout class="QHBoxLayout" name="textSliders">
- <item>
- <widget class="QGroupBox" name="translationBox">
- <property name="title">
- <string>Translation</string>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout_2">
- <item>
- <widget class="camitk::SliderTextWidget" name="tX" native="true"/>
- </item>
- <item>
- <widget class="camitk::SliderTextWidget" name="tY" native="true"/>
- </item>
- <item>
- <widget class="camitk::SliderTextWidget" name="tZ" native="true"/>
- </item>
- <item>
- <spacer name="verticalSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout">
- <item>
- <widget class="QPushButton" name="translatePushButton">
- <property name="text">
- <string>Translate</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="horizontalSpacer">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="setTranslationPushButton">
- <property name="text">
- <string>SetTranslation</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </item>
- <item>
- <widget class="QGroupBox" name="rotationBox">
- <property name="title">
- <string>Rotation</string>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout_3">
- <item>
- <widget class="camitk::SliderTextWidget" name="rX" native="true"/>
- </item>
- <item>
- <widget class="camitk::SliderTextWidget" name="rY" native="true"/>
- </item>
- <item>
- <widget class="camitk::SliderTextWidget" name="rZ" native="true"/>
- </item>
- <item>
- <spacer name="verticalSpacer_2">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout_2">
- <item>
- <widget class="QPushButton" name="rotatePushButton">
- <property name="text">
- <string>Rotate</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="horizontalSpacer_3">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="setRotationPushButton">
- <property name="text">
- <string>Set Rotation</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- </item>
- </layout>
- </item>
- <item>
- <layout class="QVBoxLayout" name="viewModifiers">
- <item>
- <layout class="QHBoxLayout" name="dialogButtons">
- <item>
- <widget class="QPushButton" name="resetButton">
- <property name="text">
- <string>Reset</string>
- </property>
- <property name="autoDefault">
- <bool>false</bool>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="horizontalSpacer_2">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="setTransformButton">
- <property name="text">
- <string>Set Transform</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </item>
- </layout>
- </item>
- <item row="3" column="0">
- <layout class="QHBoxLayout" name="horizontalLayout_4">
- <item>
- <spacer name="horizontalSpacer_4">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="savePushButton">
- <property name="text">
- <string>Save Transform</string>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="horizontalSpacer_5">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </item>
- <item row="0" column="0">
- <layout class="QHBoxLayout" name="parentFrameLayout">
- <item>
- <widget class="QLabel" name="parentFrameLabel">
- <property name="text">
- <string>Parent Frame Component</string>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QComboBox" name="parentFrameComboBox"/>
- </item>
- <item>
- <widget class="QPushButton" name="parentFramePushButton">
- <property name="text">
- <string>Set Parent Frame</string>
- </property>
- </widget>
- </item>
- </layout>
- </item>
- </layout>
- </widget>
- <layoutdefault spacing="6" margin="11"/>
- <customwidgets>
- <customwidget>
- <class>camitk::SliderTextWidget</class>
- <extends>QWidget</extends>
- <header>SliderTextWidget.h</header>
- </customwidget>
- </customwidgets>
- <includes>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- <include location="local">SliderTextWidget.h</include>
- </includes>
- <resources/>
- <connections/>
-</ui>
diff --git a/sdk/actions/frame/moveframes/TestFrameExtension.cpp b/sdk/actions/frame/moveframes/TestFrameExtension.cpp
deleted file mode 100644
index b196fb7..0000000
--- a/sdk/actions/frame/moveframes/TestFrameExtension.cpp
+++ /dev/null
@@ -1,41 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#include "TestFrameExtension.h"
-
-// include generated actions headers
-#include "MoveFrame.h"
-#include "DisplayFrame.h"
-
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(testframeextension, TestFrameExtension);
-
-// --------------- getActions -------------------
-void TestFrameExtension::init() {
- // Creating and registering the instance of MoveFrame
- registerNewAction(MoveFrame);
-
- registerNewAction(DisplayFrame);
-}
-
diff --git a/sdk/actions/frame/moveframes/TestFrameExtension.h b/sdk/actions/frame/moveframes/TestFrameExtension.h
deleted file mode 100644
index 55ee88d..0000000
--- a/sdk/actions/frame/moveframes/TestFrameExtension.h
+++ /dev/null
@@ -1,58 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#ifndef TESTFRAMEEXTENSION_H
-#define TESTFRAMEEXTENSION_H
-
-#include <ActionExtension.h>
-
-class TestFrameExtension : public camitk::ActionExtension {
- Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
-
-public:
- /// Constructor
- TestFrameExtension() : ActionExtension() {};
-
- /// Destructor
- virtual ~TestFrameExtension() {};
-
- /// Method returning the action extension name
- virtual QString getName() {
- return "TestFrame";
- };
-
- /// Method returning the action extension descrption
- virtual QString getDescription() {
- return "This extention allows to test and get familiar with the frame environment.";
- };
-
- /// initialize all the actions
- virtual void init();
-
-};
-
-#endif // TESTFRAMEEXTENSION_H
-
-
diff --git a/sdk/actions/frame/moveframes/resources/translate/translate_en.ts b/sdk/actions/frame/moveframes/resources/translate/translate_en.ts
deleted file mode 100644
index 219b573..0000000
--- a/sdk/actions/frame/moveframes/resources/translate/translate_en.ts
+++ /dev/null
@@ -1,140 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!DOCTYPE TS>
-<TS version="2.0" language="en_US">
-<context>
- <name>DisplayFrame</name>
- <message>
- <location filename="../../DisplayFrame.cpp" line="42"/>
- <source>This action allows to display/hide a component frame's axes.</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="47"/>
- <source>Test</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="48"/>
- <source>Display</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="49"/>
- <source>Visualization</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="51"/>
- <source>Display or not the local Component's Frame Axes in the 3D viewer</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="54"/>
- <source>Axes size</source>
- <translation type="unfinished"></translation>
- </message>
-</context>
-<context>
- <name>MoveFrame</name>
- <message>
- <location filename="../../MoveFrame.ui" line="23"/>
- <source>Rigid Transformation</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="26"/>
- <source>TransformDialog</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="39"/>
- <source>Translation</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="69"/>
- <source>Translate</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="89"/>
- <source>SetTranslation</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="101"/>
- <source>Rotation</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="131"/>
- <source>Rotate</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="151"/>
- <source>Set Rotation</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="169"/>
- <source>Reset</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="192"/>
- <source>Set Transform</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="220"/>
- <source>Save Transform</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="244"/>
- <source>Parent Frame Component</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="254"/>
- <source>Set Parent Frame</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="57"/>
- <source>This action allow to move a frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="62"/>
- <source>Test</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="63"/>
- <source>Move</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="64"/>
- <source>Visualization</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="84"/>
- <source>Around X</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="85"/>
- <source>Around Y</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="86"/>
- <source>Around Z</source>
- <translation type="unfinished"></translation>
- </message>
-</context>
-</TS>
diff --git a/sdk/actions/frame/moveframes/resources/translate/translate_fr.ts b/sdk/actions/frame/moveframes/resources/translate/translate_fr.ts
deleted file mode 100644
index d0b8a3d..0000000
--- a/sdk/actions/frame/moveframes/resources/translate/translate_fr.ts
+++ /dev/null
@@ -1,140 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<!DOCTYPE TS>
-<TS version="2.0" language="fr_FR">
-<context>
- <name>DisplayFrame</name>
- <message>
- <location filename="../../DisplayFrame.cpp" line="42"/>
- <source>This action allows to display/hide a component frame's axes.</source>
- <translation>Cette action permet d'afficher/cacher les axes des cadres de component.</translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="47"/>
- <source>Test</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="48"/>
- <source>Display</source>
- <translation>Afficher</translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="49"/>
- <source>Visualization</source>
- <translation>Visualisation</translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="51"/>
- <source>Display or not the local Component's Frame Axes in the 3D viewer</source>
- <translation>Afficher ou pas les Axes du Cadre de Component local dans l'afficheur 3D</translation>
- </message>
- <message>
- <location filename="../../DisplayFrame.cpp" line="54"/>
- <source>Axes size</source>
- <translation>Taille des Axes</translation>
- </message>
-</context>
-<context>
- <name>MoveFrame</name>
- <message>
- <location filename="../../MoveFrame.ui" line="23"/>
- <source>Rigid Transformation</source>
- <translation>Transformation Rigide</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="26"/>
- <source>TransformDialog</source>
- <translation>Transform Dialogue</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="39"/>
- <source>Translation</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="69"/>
- <source>Translate</source>
- <translation>Translater</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="89"/>
- <source>SetTranslation</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="101"/>
- <source>Rotation</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="131"/>
- <source>Rotate</source>
- <translation>Rotationner</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="151"/>
- <source>Set Rotation</source>
- <translation>Initialiser Rotation</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="169"/>
- <source>Reset</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="192"/>
- <source>Set Transform</source>
- <translation>Initialiser Transform</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="220"/>
- <source>Save Transform</source>
- <translation>Sauver Transform</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="244"/>
- <source>Parent Frame Component</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.ui" line="254"/>
- <source>Set Parent Frame</source>
- <translation>Initialiser Parent Frame</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="57"/>
- <source>This action allow to move a frame from its parent frame (or the world frame if it has no parent) by setting translations and rotation parameters.</source>
- <translation>Cette action permet de déplacer un cadre depuis le cadre parent (ou le cadre world si il n'a pas de parent) en initialisant les paramètres de translation et de rotation.</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="62"/>
- <source>Test</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="63"/>
- <source>Move</source>
- <translation>Déplacer</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="64"/>
- <source>Visualization</source>
- <translation>Visualisation</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="84"/>
- <source>Around X</source>
- <translation>Autour de X</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="85"/>
- <source>Around Y</source>
- <translation>Autour de Y</translation>
- </message>
- <message>
- <location filename="../../MoveFrame.cpp" line="86"/>
- <source>Around Z</source>
- <translation>Autour de Z</translation>
- </message>
-</context>
-</TS>
diff --git a/sdk/actions/image/arbitraryslice/AnglesSetterWidget.cpp b/sdk/actions/image/arbitraryslice/AnglesSetterWidget.cpp
index af51b84..51b9bdc 100644
--- a/sdk/actions/image/arbitraryslice/AnglesSetterWidget.cpp
+++ b/sdk/actions/image/arbitraryslice/AnglesSetterWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/arbitraryslice/AnglesSetterWidget.h b/sdk/actions/image/arbitraryslice/AnglesSetterWidget.h
index 56fcb29..cc34f50 100644
--- a/sdk/actions/image/arbitraryslice/AnglesSetterWidget.h
+++ b/sdk/actions/image/arbitraryslice/AnglesSetterWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.cpp b/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.cpp
index 2204858..916aaa2 100644
--- a/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.cpp
+++ b/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.h b/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.h
index 917cfdf..abee78a 100644
--- a/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.h
+++ b/sdk/actions/image/arbitraryslice/ArbitrarySliceExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/arbitraryslice/CMakeLists.txt b/sdk/actions/image/arbitraryslice/CMakeLists.txt
index d6f8b9a..a46057c 100644
--- a/sdk/actions/image/arbitraryslice/CMakeLists.txt
+++ b/sdk/actions/image/arbitraryslice/CMakeLists.txt
@@ -1,10 +1,12 @@
-# Call CamiTK CMake Macro to define the action
-camitk_extension( ACTION_EXTENSION
- CEP_NAME SDK
- DESCRIPTION "Control of the arbitrary slice on image component"
- TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
- )
+# Disable this action as long as the Interactive viewer does not consider the arbitrary viewer back.
-# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
-set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
+## Call CamiTK CMake Macro to define the action
+#camitk_extension( ACTION_EXTENSION
+# CEP_NAME SDK
+# DESCRIPTION "Control of the arbitrary slice on image component"
+# TEST_APPLICATION ${APPLICATION_TEST_ACTION}
+# TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.st [...]
+# )
+
+## Recursively update the shiboken path variable containing the CamiTK SDK tree structure
+#set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
diff --git a/sdk/actions/image/arbitraryslice/SetAnglesAction.cpp b/sdk/actions/image/arbitraryslice/SetAnglesAction.cpp
index 34a4695..225bc21 100644
--- a/sdk/actions/image/arbitraryslice/SetAnglesAction.cpp
+++ b/sdk/actions/image/arbitraryslice/SetAnglesAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/arbitraryslice/SetAnglesAction.h b/sdk/actions/image/arbitraryslice/SetAnglesAction.h
index f5238a9..4e4da7b 100644
--- a/sdk/actions/image/arbitraryslice/SetAnglesAction.h
+++ b/sdk/actions/image/arbitraryslice/SetAnglesAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/cropvolume/BoxVOI.cpp b/sdk/actions/image/cropvolume/BoxVOI.cpp
index 992e429..88ddf1d 100644
--- a/sdk/actions/image/cropvolume/BoxVOI.cpp
+++ b/sdk/actions/image/cropvolume/BoxVOI.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -138,7 +138,7 @@ void BoxVOI::process ( ImageComponent * comp ) {
vtkSmartPointer<vtkExtractVOI> extractVOI = vtkSmartPointer<vtkExtractVOI>::New();
//construction of new img
- extractVOI->SetInput ( inputImage );
+ extractVOI->SetInputData ( inputImage );
//get seeds values
int x1,x2,y1,y2,z1,z2=0;
@@ -163,7 +163,7 @@ void BoxVOI::process ( ImageComponent * comp ) {
extractVOI->Update();
// --------------------- Create and return a copy (the filters will be deleted)--
- vtkImageData * resultImage = extractVOI->GetOutput();
+ vtkSmartPointer<vtkImageData> resultImage = extractVOI->GetOutput();
// Adapt properties of the new volume
double *inputO = inputImage->GetOrigin();
@@ -186,12 +186,17 @@ void BoxVOI::process ( ImageComponent * comp ) {
//Update values computed
result->SetExtent ( extent );
result->DeepCopy ( resultImage );
- result->Update();
// creation of the image component
QString newName;
QTextStream ( &newName ) << comp->getName() << "_cropped";
- new ImageComponent ( result, newName );
+
+ // Keep its parent frame.
+ ImageComponent* outputComp = new ImageComponent ( result, newName );
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
Application::refresh();
}
diff --git a/sdk/actions/image/cropvolume/BoxVOI.h b/sdk/actions/image/cropvolume/BoxVOI.h
index 1d47e5c..27706e8 100644
--- a/sdk/actions/image/cropvolume/BoxVOI.h
+++ b/sdk/actions/image/cropvolume/BoxVOI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,7 @@
#include <ImageComponent.h>
#include <QFrame>
+#include "BoxVOIAPI.h"
/**
* @ingroup group_sdk_actions_image_cropvolume
@@ -39,7 +40,7 @@
* Action to crop a volumic image.
*
*/
-class BoxVOI : public camitk::Action {
+class BOXVOI_API BoxVOI : public camitk::Action {
Q_OBJECT
public:
diff --git a/sdk/actions/image/cropvolume/BoxVOIAPI.h b/sdk/actions/image/cropvolume/BoxVOIAPI.h
new file mode 100644
index 0000000..62cf8d7
--- /dev/null
+++ b/sdk/actions/image/cropvolume/BoxVOIAPI.h
@@ -0,0 +1,9 @@
+#if defined(_WIN32) // MSVC and mingw
+#ifdef COMPILE_BOXVOI_API
+#define BOXVOI_API __declspec(dllexport)
+#else
+#define BOXVOI_API __declspec(dllimport)
+#endif // COMPILE_BOXVOI_API
+#else // for all other platforms BOXVOI_API is defined to be "nothing"
+#define BOXVOI_API
+#endif // MSVC and mingw
\ No newline at end of file
diff --git a/sdk/actions/image/cropvolume/BoxVOIExtension.cpp b/sdk/actions/image/cropvolume/BoxVOIExtension.cpp
index ba40131..cb00816 100644
--- a/sdk/actions/image/cropvolume/BoxVOIExtension.cpp
+++ b/sdk/actions/image/cropvolume/BoxVOIExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,9 +27,6 @@
// include generated actions headers
#include "BoxVOI.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2 (boxvoiextension, BoxVOIExtension)
-
// --------------- getActions -------------------
void BoxVOIExtension::init() {
registerNewAction (BoxVOI);
diff --git a/sdk/actions/image/cropvolume/BoxVOIExtension.h b/sdk/actions/image/cropvolume/BoxVOIExtension.h
index 31b438e..8be920b 100644
--- a/sdk/actions/image/cropvolume/BoxVOIExtension.h
+++ b/sdk/actions/image/cropvolume/BoxVOIExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,13 +38,14 @@
class BoxVOIExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES (camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.cropvolume")
public:
/// the constructor
- BoxVOIExtension() : ActionExtension() {};
+ BoxVOIExtension() : ActionExtension() {}
/// the destructor
- virtual ~BoxVOIExtension() {};
+ virtual ~BoxVOIExtension() {}
/// Method that return the action extension name
virtual QString getName() {
diff --git a/sdk/actions/image/cropvolume/BoxVOIWidget.cpp b/sdk/actions/image/cropvolume/BoxVOIWidget.cpp
index edcdbfd..c919aad 100644
--- a/sdk/actions/image/cropvolume/BoxVOIWidget.cpp
+++ b/sdk/actions/image/cropvolume/BoxVOIWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/cropvolume/BoxVOIWidget.h b/sdk/actions/image/cropvolume/BoxVOIWidget.h
index 132b191..0a30066 100644
--- a/sdk/actions/image/cropvolume/BoxVOIWidget.h
+++ b/sdk/actions/image/cropvolume/BoxVOIWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/cropvolume/BoxVOIWidget.ui b/sdk/actions/image/cropvolume/BoxVOIWidget.ui
index f77b446..d53477e 100644
--- a/sdk/actions/image/cropvolume/BoxVOIWidget.ui
+++ b/sdk/actions/image/cropvolume/BoxVOIWidget.ui
@@ -40,9 +40,9 @@
<item>
<widget class="QGroupBox" name="boxPointsGroupBox">
<property name="sizePolicy">
- <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
+ <sizepolicy hsizetype="MinimumExpanding" vsizetype="Maximum">
<horstretch>0</horstretch>
- <verstretch>1</verstretch>
+ <verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="title">
@@ -54,38 +54,42 @@
<item>
<widget class="QGroupBox" name="groupBox">
<property name="sizePolicy">
- <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
+ <sizepolicy hsizetype="MinimumExpanding" vsizetype="MinimumExpanding">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="title">
- <string>ROI properties</string>
+ <string>Description</string>
</property>
<layout class="QGridLayout" name="gridLayout_2">
<item row="0" column="0" colspan="2">
- <widget class="QTextEdit" name="descriptionBoxVOI">
+ <widget class="QPlainTextEdit" name="descriptionBoxVOI">
<property name="sizePolicy">
- <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <sizepolicy hsizetype="Expanding" vsizetype="MinimumExpanding">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
+ <property name="font">
+ <font>
+ <family>Liberation Sans</family>
+ <pointsize>8</pointsize>
+ <kerning>true</kerning>
+ </font>
+ </property>
<property name="frameShape">
<enum>QFrame::NoFrame</enum>
</property>
<property name="frameShadow">
<enum>QFrame::Plain</enum>
</property>
- <property name="html">
- <string><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
-<html><head><meta name="qrichtext" content="1" /><style type="text/css">
-p, li { white-space: pre-wrap; }
-</style></head><body style=" font-family:'Ubuntu'; font-size:9pt; font-weight:400; font-style:normal;">
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Description:</p>
-<p align="justify" style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">This filter helps you to crop a volume with a parallelepiped. To use it, select respectively the min and the max of each axe (i,j,k), i.e 6 points.</p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">It is possible to choose only 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </p></body></html></string>
+ <property name="plainText">
+ <string>This filter helps you to crop a volume with a parallelepiped.
+
+Two use cases are possible:
+- Select respectively the min and the max of each axe (i,j,k), i.e 6 points.
+- Select 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </string>
</property>
</widget>
</item>
@@ -93,19 +97,6 @@ p, li { white-space: pre-wrap; }
</widget>
</item>
<item>
- <spacer name="groupBoxVSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
<layout class="QHBoxLayout" name="horizontalLayout">
<item>
<widget class="QPushButton" name="applyButton">
diff --git a/sdk/actions/image/cropvolume/CMakeLists.txt b/sdk/actions/image/cropvolume/CMakeLists.txt
index 0a294ba..af9c395 100644
--- a/sdk/actions/image/cropvolume/CMakeLists.txt
+++ b/sdk/actions/image/cropvolume/CMakeLists.txt
@@ -1,12 +1,22 @@
# Call CamiTK CMake Macro to define the action
camitk_extension( ACTION_EXTENSION
- DEFINES COMPILE_BOXVOI_ACTION_API
+ DEFINES COMPILE_BOXVOI_API
NEEDS_ACTION_EXTENSION multipicking
CEP_NAME SDK
DESCRIPTION "Helps you to crop a volume to keep only an interesting subsample"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh diaphragm.pml head1.STL
+ TEST_FILES bassin.msh diaphragm.pml head1.STL liver-smooth.obj Mesh.off mixed_3D_beam.msh robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
-set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
+set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
+
+# "Box Volume Of Interest" action will always fail as it needs a widget to define the
+# voxels that define the ROI
+# The following line will inverse the result of the test, and therefore transform
+# a fail to a pass
+# This is needed until there is a way to automatically add input ROI without a widget
+# and launch the action with this input from the test environment
+if(NOT PACKAGING_NSIS)
+ set_tests_properties("action-cropvolume-LEVEL1-15" PROPERTIES WILL_FAIL true)
+endif()
diff --git a/sdk/actions/image/cropvolume/resources/translate/translate_en.ts b/sdk/actions/image/cropvolume/resources/translate/translate_en.ts
index 94e0e72..1f03a10 100644
--- a/sdk/actions/image/cropvolume/resources/translate/translate_en.ts
+++ b/sdk/actions/image/cropvolume/resources/translate/translate_en.ts
@@ -62,15 +62,12 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../BoxVOIWidget.ui" line="81"/>
- <source><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
-<html><head><meta name="qrichtext" content="1" /><style type="text/css">
-p, li { white-space: pre-wrap; }
-</style></head><body style=" font-family:'Ubuntu'; font-size:9pt; font-weight:400; font-style:normal;">
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Description:</p>
-<p align="justify" style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">This filter helps you to crop a volume with a parallelepiped. To use it, select respectively the min and the max of each axe (i,j,k), i.e 6 points.</p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">It is possible to choose only 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </p></body></html></source>
+ <location filename="../../BoxVOIWidget.ui" line="88"/>
+ <source>This filter helps you to crop a volume with a parallelepiped.
+
+Two use cases are possible:
+- Select respectively the min and the max of each axe (i,j,k), i.e 6 points.
+- Select 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </source>
<translation type="unfinished"></translation>
</message>
<message>
@@ -78,5 +75,10 @@ p, li { white-space: pre-wrap; }
<source>Apply</source>
<translation type="unfinished"></translation>
</message>
+ <message>
+ <location filename="../../../../../../../../Dev/CamiTK/camitk/sdk/actions/image/cropvolume/BoxVOIWidget.ui" line="104"/>
+ <source>Apply</source>
+ <translation type="unfinished"></translation>
+ </message>
</context>
</TS>
diff --git a/sdk/actions/image/cropvolume/resources/translate/translate_fr.ts b/sdk/actions/image/cropvolume/resources/translate/translate_fr.ts
index 01d1bb5..c08c8df 100644
--- a/sdk/actions/image/cropvolume/resources/translate/translate_fr.ts
+++ b/sdk/actions/image/cropvolume/resources/translate/translate_fr.ts
@@ -63,28 +63,23 @@
<translation>Propriétés ROI</translation>
</message>
<message>
- <location filename="../../BoxVOIWidget.ui" line="81"/>
- <source><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
-<html><head><meta name="qrichtext" content="1" /><style type="text/css">
-p, li { white-space: pre-wrap; }
-</style></head><body style=" font-family:'Ubuntu'; font-size:9pt; font-weight:400; font-style:normal;">
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Description:</p>
-<p align="justify" style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">This filter helps you to crop a volume with a parallelepiped. To use it, select respectively the min and the max of each axe (i,j,k), i.e 6 points.</p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">It is possible to choose only 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </p></body></html></source>
- <translation><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
-<html><head><meta name="qrichtext" content="1" /><style type="text/css">
-p, li { white-space: pre-wrap; }
-</style></head><body style=" font-family:'Ubuntu'; font-size:9pt; font-weight:400; font-style:normal;">
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Description:</p>
-<p align="justify" style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><br /></p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Ce filtre vous permet de retailler un volume dans un parallélépipède. Pour le mettre en oeuvre, selectionner le minet le max de chaque axe (i,j,k), i.e 6 points.</p>
-<p align="justify" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;">Il est possible de choisir seulement 2 points pour construire the parallélépipède. Dans ce cas, les points donnés doivent être l'origine et l'opposé de la diagonal du parallélépipède. </p></body></html></translation>
+ <location filename="../../BoxVOIWidget.ui" line="88"/>
+ <source>This filter helps you to crop a volume with a parallelepiped.
+
+Two use cases are possible:
+- Select respectively the min and the max of each axe (i,j,k), i.e 6 points.
+- Select 2 points to construct the parallelepiped. In this case, given points must be the origin and opposite diagonal point of the parallelepiped. </source>
+ <translation type="unfinished"></translation>
</message>
<message>
<location filename="../../BoxVOIWidget.ui" line="113"/>
<source>Apply</source>
<translation>Appliquer</translation>
</message>
+ <message>
+ <location filename="../../../../../../../../Dev/CamiTK/camitk/sdk/actions/image/cropvolume/BoxVOIWidget.ui" line="104"/>
+ <source>Apply</source>
+ <translation type="unfinished"></translation>
+ </message>
</context>
</TS>
diff --git a/sdk/actions/image/imagelut/CMakeLists.txt b/sdk/actions/image/imagelut/CMakeLists.txt
index 5327d6d..22cc783 100644
--- a/sdk/actions/image/imagelut/CMakeLists.txt
+++ b/sdk/actions/image/imagelut/CMakeLists.txt
@@ -3,7 +3,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Displays the image look-up-table (lut)"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/image/imagelut/ImageLutAction.cpp b/sdk/actions/image/imagelut/ImageLutAction.cpp
index a25fe92..bf7d353 100644
--- a/sdk/actions/image/imagelut/ImageLutAction.cpp
+++ b/sdk/actions/image/imagelut/ImageLutAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/imagelut/ImageLutAction.h b/sdk/actions/image/imagelut/ImageLutAction.h
index 6ee07ab..5cb2a42 100644
--- a/sdk/actions/image/imagelut/ImageLutAction.h
+++ b/sdk/actions/image/imagelut/ImageLutAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/imagelut/ImageLutExtension.cpp b/sdk/actions/image/imagelut/ImageLutExtension.cpp
index 17486fc..e7b71f7 100644
--- a/sdk/actions/image/imagelut/ImageLutExtension.cpp
+++ b/sdk/actions/image/imagelut/ImageLutExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,9 +26,6 @@
#include "ImageLutExtension.h"
#include "ImageLutAction.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(imagelut, ImageLutExtension);
-
// --------------- init -------------------
void ImageLutExtension::init() {
registerNewAction(ImageLutAction);
diff --git a/sdk/actions/image/imagelut/ImageLutExtension.h b/sdk/actions/image/imagelut/ImageLutExtension.h
index 4d5d6c7..a1c6846 100644
--- a/sdk/actions/image/imagelut/ImageLutExtension.h
+++ b/sdk/actions/image/imagelut/ImageLutExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,14 +37,15 @@
*/
class ImageLutExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.imagelut")
public:
/// the constructor
- ImageLutExtension() : ActionExtension() {};
+ ImageLutExtension() : ActionExtension() {}
/// the destructor
- virtual ~ImageLutExtension() {};
+ virtual ~ImageLutExtension() {}
/// initialize all the actions
virtual void init();
diff --git a/sdk/actions/image/imagelut/ImageLutWidget.cpp b/sdk/actions/image/imagelut/ImageLutWidget.cpp
index 4642e68..772990d 100644
--- a/sdk/actions/image/imagelut/ImageLutWidget.cpp
+++ b/sdk/actions/image/imagelut/ImageLutWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -332,7 +332,7 @@ void ImageLutWidget::draw () {
pen.setStyle(Qt::DashLine);
// pen width depends on numbers of bars in the histogram
- int penWidth = (int)(sceneRectangle.width() / 100.0);
+ int penWidth = 3.0; // (int)(sceneRectangle.width() / 100.0);
pen.setWidth(penWidth);
ui.histogramGraphicsView->scene()->addLine(level, sceneRectangle.y(), level, sceneRectangle.height(), pen);
@@ -489,7 +489,15 @@ void ImageLutWidget::invertButtonClicked() {
void ImageLutWidget::updateGradient() {
QColor maxColor = ui.maxColor->palette().button().color();
QColor minColor = ui.minColor->palette().button().color();
- QString style = "background-color: qlineargradient(x1:0 y1:0, x2:1 y2:0, stop:0 rgba("+ QString::number(minColor.red()) + ", " + QString::number(minColor.green()) + ", " + QString::number(minColor.blue()) + ", " + QString::number(minColor.alpha()) + " ), stop:1 rgba( " + QString::number(maxColor.red()) + ", " + QString::number(maxColor.green()) + ", " + QString::number(maxColor.blue()) + ", " + QString::number(maxColor.alpha()) + " ) )";
+ QString style = "background-color: qlineargradient(x1:0 y1:0, x2:1 y2:0, stop:0 rgba("+
+ QString::number(minColor.red()) + ", " +
+ QString::number(minColor.green()) + ", " +
+ QString::number(minColor.blue()) + ", " +
+ QString::number(minColor.alpha()) + " ), stop:1 rgba( " +
+ QString::number(maxColor.red()) + ", " +
+ QString::number(maxColor.green()) + ", " +
+ QString::number(maxColor.blue()) + ", " +
+ QString::number(maxColor.alpha()) + " ) )";
ui.colorScale->setStyleSheet(style);
}
diff --git a/sdk/actions/image/imagelut/ImageLutWidget.h b/sdk/actions/image/imagelut/ImageLutWidget.h
index cd2673b..4dc841f 100644
--- a/sdk/actions/image/imagelut/ImageLutWidget.h
+++ b/sdk/actions/image/imagelut/ImageLutWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/imageresampling/CMakeLists.txt b/sdk/actions/image/imageresampling/CMakeLists.txt
index 5ed763b..725e19a 100644
--- a/sdk/actions/image/imageresampling/CMakeLists.txt
+++ b/sdk/actions/image/imageresampling/CMakeLists.txt
@@ -3,5 +3,5 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Re-sample image volumes"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
\ No newline at end of file
diff --git a/sdk/actions/image/imageresampling/ResampleAction.cpp b/sdk/actions/image/imageresampling/ResampleAction.cpp
index 4957793..cd889b1 100644
--- a/sdk/actions/image/imageresampling/ResampleAction.cpp
+++ b/sdk/actions/image/imageresampling/ResampleAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,6 +28,7 @@
#include <Property.h>
// Vtk includes
+#include <vtkCallbackCommand.h>
#include "vtkImageShiftScale.h"
#include <vtkImageResample.h>
@@ -98,6 +99,12 @@ Action::ApplyStatus ResampleAction::apply() {
}
void ResampleAction::process(ImageComponent * comp) {
+ QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
+ Application::showStatusBarMessage(tr("Compute resample..."));
+ Application::resetProgressBar();
+ vtkSmartPointer<vtkCallbackCommand> progressCallback = vtkSmartPointer<vtkCallbackCommand>::New();
+ progressCallback->SetCallback(&Application::vtkProgressFunction);
+
// Get the parameters
double xSize = property("New image X dimension").toDouble();
double ySize = property("New image Y dimension").toDouble();
@@ -126,7 +133,10 @@ void ResampleAction::process(ImageComponent * comp) {
QString nameScalarType;
vtkSmartPointer<vtkImageShiftScale> shiftScaleFilter = vtkSmartPointer<vtkImageShiftScale>::New();
- shiftScaleFilter->SetInput(inputImage);
+
+ shiftScaleFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
+
+ shiftScaleFilter->SetInputData(inputImage);
// Case on the input scalar type : compute the max and min type of the output
// and also the name of the new image.
@@ -196,11 +206,14 @@ void ResampleAction::process(ImageComponent * comp) {
new size divided by the old size for each axe. */
vtkSmartPointer <vtkImageResample> resampleFilter = vtkSmartPointer<vtkImageResample>::New();
+
+ resampleFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
+
double xFactor = xSize/(double)dims[0];
double yFactor = ySize/(double)dims[1];
double zFactor = zSize/(double)dims[2];
- resampleFilter->SetInput(shiftScaleFilter->GetOutput());
+ resampleFilter->SetInputData(shiftScaleFilter->GetOutput());
resampleFilter->SetAxisMagnificationFactor(0, xFactor);
resampleFilter->SetAxisMagnificationFactor(1, yFactor);
resampleFilter->SetAxisMagnificationFactor(2, zFactor);
@@ -215,8 +228,17 @@ void ResampleAction::process(ImageComponent * comp) {
<< property("Size X (nb of Voxels)").toInt() << "*"
<< property("Size Y (nb of Voxels)").toInt() << "*"
<< property("Size Z (nb of Voxels)").toInt();
- new ImageComponent(resampleFilter->GetOutput(), newName);
+
+ ImageComponent* outputComp = new ImageComponent(resampleFilter->GetOutput(), newName);
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(comp, outputComp);
+
+ // refresh restore the normal cursor and progress bar
Application::refresh();
+ Application::resetProgressBar();
+ Application::showStatusBarMessage("");
+ QApplication::restoreOverrideCursor();
}
diff --git a/sdk/actions/image/imageresampling/ResampleAction.h b/sdk/actions/image/imageresampling/ResampleAction.h
index ed4f783..e803bfa 100644
--- a/sdk/actions/image/imageresampling/ResampleAction.h
+++ b/sdk/actions/image/imageresampling/ResampleAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/imageresampling/ResampleExtension.cpp b/sdk/actions/image/imageresampling/ResampleExtension.cpp
index eb6507a..fbaf7a3 100644
--- a/sdk/actions/image/imageresampling/ResampleExtension.cpp
+++ b/sdk/actions/image/imageresampling/ResampleExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,9 +27,6 @@
// include generated actions headers
#include "ResampleAction.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(resampleextension, ResampleExtension);
-
// --------------- getActions -------------------
void ResampleExtension::init() {
// Creating and registering the instance of ResampleAction
diff --git a/sdk/actions/image/imageresampling/ResampleExtension.h b/sdk/actions/image/imageresampling/ResampleExtension.h
index 80c1e88..ea21f3a 100644
--- a/sdk/actions/image/imageresampling/ResampleExtension.h
+++ b/sdk/actions/image/imageresampling/ResampleExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,14 +29,15 @@
class ResampleExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.imageresampling")
public:
/// Constructor
- ResampleExtension() : ActionExtension() {};
+ ResampleExtension() : ActionExtension() {}
/// Destructor
- virtual ~ResampleExtension() {};
+ virtual ~ResampleExtension() {}
/// Method returning the action extension name
virtual QString getName() {
diff --git a/sdk/actions/image/multipicking/CMakeLists.txt b/sdk/actions/image/multipicking/CMakeLists.txt
index 77e271f..f8af477 100644
--- a/sdk/actions/image/multipicking/CMakeLists.txt
+++ b/sdk/actions/image/multipicking/CMakeLists.txt
@@ -4,7 +4,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Action-multipicking allows one to make several pixel picking on an image component (volumic image)"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/image/multipicking/MultiPicking.cpp b/sdk/actions/image/multipicking/MultiPicking.cpp
index 1f01610..b1faa46 100644
--- a/sdk/actions/image/multipicking/MultiPicking.cpp
+++ b/sdk/actions/image/multipicking/MultiPicking.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/multipicking/MultiPicking.h b/sdk/actions/image/multipicking/MultiPicking.h
index 4709f87..fad6dfa 100644
--- a/sdk/actions/image/multipicking/MultiPicking.h
+++ b/sdk/actions/image/multipicking/MultiPicking.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/multipicking/MultiPickingAPI.h b/sdk/actions/image/multipicking/MultiPickingAPI.h
index 83cf49f..8ff36d6 100644
--- a/sdk/actions/image/multipicking/MultiPickingAPI.h
+++ b/sdk/actions/image/multipicking/MultiPickingAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/multipicking/MultiPickingExtension.cpp b/sdk/actions/image/multipicking/MultiPickingExtension.cpp
index 6df1ce1..a19dad6 100644
--- a/sdk/actions/image/multipicking/MultiPickingExtension.cpp
+++ b/sdk/actions/image/multipicking/MultiPickingExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,9 +27,6 @@
// include generated actions headers
#include "MultiPicking.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2 (multipickingextension, MultiPickingExtension)
-
// --------------- getActions -------------------
void MultiPickingExtension::init() {
registerNewAction (MultiPicking);
diff --git a/sdk/actions/image/multipicking/MultiPickingExtension.h b/sdk/actions/image/multipicking/MultiPickingExtension.h
index 73e016c..307e9a5 100644
--- a/sdk/actions/image/multipicking/MultiPickingExtension.h
+++ b/sdk/actions/image/multipicking/MultiPickingExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,13 +38,14 @@
class MultiPickingExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES (camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.multipicking")
public:
/// the constructor
- MultiPickingExtension() : ActionExtension() {};
+ MultiPickingExtension() : ActionExtension() {}
/// the destructor
- virtual ~MultiPickingExtension() {};
+ virtual ~MultiPickingExtension() {}
/// Method that return the action extension name
virtual QString getName() {
diff --git a/sdk/actions/image/multipicking/MultiPickingWidget.cpp b/sdk/actions/image/multipicking/MultiPickingWidget.cpp
index 0765f29..9e0d1e9 100644
--- a/sdk/actions/image/multipicking/MultiPickingWidget.cpp
+++ b/sdk/actions/image/multipicking/MultiPickingWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -45,7 +45,9 @@ using namespace camitk;
#include <QWidget>
-#define HEADER_TABLE "i,j,k,value,view,edit,remove"
+#define HEADER_TABLE_VOXEL "i,j,k,value,view,edit,remove"
+#define HEADER_TABLE_IMG "x,y,z,value,view,edit,remove"
+#define HEADER_TABLE_REAL "rx,ry,rz,value,view,edit,remove"
#define X_TABLE_INDEX 0
#define Y_TABLE_INDEX 1
#define Z_TABLE_INDEX 2
@@ -118,19 +120,27 @@ void MultiPickingWidget::updateTable() {
// Update the QtableWidget with the pixelIndexList
if (pPM->getPixelIndexList() !=NULL) {
ui.pointsTableWidget->setColumnCount (NB_TABLE_COLUMNS);
- QString headerString(HEADER_TABLE);
- QStringList header = headerString.split(",");
+ ui.pointsTableWidget->horizontalHeaderItem (NB_TABLE_COLUMNS);
+ QString headerString; //(HEADER_TABLE);
+ QStringList header; // = headerString.split(",");
if (ui.indexRadioButton->isChecked()) {
- // case of index points table
- ui.pointsTableWidget->horizontalHeaderItem (NB_TABLE_COLUMNS);
+ // case of voxel index
+ headerString = QString(HEADER_TABLE_VOXEL);
+ header = headerString.split(",");
ui.pointsTableWidget->setHorizontalHeaderLabels (header);
createItems (pPM->getPixelIndexList(), pPM->getPixelValueList());
- } else {
- // case of coordinates points table
- ui.pointsTableWidget->horizontalHeaderItem (NB_TABLE_COLUMNS);
+ } else if (ui.coordinatesRadioButton->isChecked()){
+ // case of image coordinates
+ headerString = QString(HEADER_TABLE_IMG);
+ header = headerString.split(",");
ui.pointsTableWidget->setHorizontalHeaderLabels (header);
createItems (pPM->getCoordIndexList(), pPM->getPixelValueList());
+ } else { // ui.worldRadioButton->isChecked()
+ headerString = QString(HEADER_TABLE_REAL);
+ header = headerString.split(",");
+ ui.pointsTableWidget->setHorizontalHeaderLabels (header);
+ createItems (pPM->getRealWorldList(), pPM->getPixelValueList());
}
}
@@ -184,7 +194,7 @@ void MultiPickingWidget::removeSeedNumber(int i, int j) {
break;
case VIEW_TABLE_INDEX:
point = pPM->getPixelIndexList()->at(ui.pointsTableWidget->currentRow());
- img->pixelPicked(point.x(), point.y(), point.z(), img->getAxialSlices());
+ img->pixelPicked(point.x() * img->getVoxelSize().x(), point.y() * img->getVoxelSize().y(), point.z() * img->getVoxelSize().z(), img->getAxialSlices());//Need here the voxel coordinates (not voxel index, not voxel world coordinates)
Application::refresh();
break;
default:
@@ -292,60 +302,79 @@ void MultiPickingWidget::manuallyModified(int i, int j) {
QMessageBox::warning(this, "Impossible Operation", "You cannot change the value of a voxel, sorry");
updateTable();
return;
- } else {
+ } else if (ui.worldRadioButton->isChecked()) {
+ QMessageBox::warning(this, "Impossible Operation", "You cannot change the values real world coords, they are just here for display, sorry\nYou can manually change image indices and image coordinates if you want, though...\n");
+ updateTable();
+ return;
+ } else if (ui.indexRadioButton->isChecked()) {
int * imageDims = img->getImageData()->GetDimensions();
- QList< QVector3D >* liste = new QList<QVector3D>();
- int numberOfRows = ui.pointsTableWidget->rowCount();
- // If the user modified an index
- if (ui.indexRadioButton->isChecked()) {
- for (int i = 0; i < numberOfRows ; i++) {
- QVector3D v;
- v.setX(ui.pointsTableWidget->item(i, X_TABLE_INDEX)->text().toInt());
- v.setY(ui.pointsTableWidget->item(i, Y_TABLE_INDEX)->text().toInt());
- v.setZ(ui.pointsTableWidget->item(i, Z_TABLE_INDEX)->text().toInt());
-
- if (((v.x() < 0) || (v.x() > imageDims[0])) ||
- ((v.y() < 0) || (v.y() > imageDims[1])) ||
- ((v.z() < 0) || (v.z() > imageDims[2]))) {
- QString msg = "The point (" + QString::number(v.x()) +
- ", " + QString::number(v.y()) + ", " + QString::number(v.z()) + "), does not belong to the image " + img->getName() + ". Sorry...";
- QMessageBox::warning(this, "Impossible Operation", msg);
- liste->clear();
- updateTable();
- return;
- }
- liste->append(v);
- }
- pPM->changePixelIndexList(liste);
+ QVector3D voxSize = img->getVoxelSize();
+ // Change the pixel index at this row
+ // 3 possible case, either x, or y or z of one point have been manually changed
+ // We thus pick this new point
+ // For item number i, re-pick
+ int iPick = ui.pointsTableWidget->item(i, X_TABLE_INDEX)->text().toInt();
+ int jPick = ui.pointsTableWidget->item(i, Y_TABLE_INDEX)->text().toInt();
+ int kPick = ui.pointsTableWidget->item(i, Z_TABLE_INDEX)->text().toInt();
+
+ // Exceptionnally, we do not make this calculation by image picking and use image voxel size
+ // to mimick a picking from the axial slice.
+ double x = iPick * voxSize.x();
+ double y = jPick * voxSize.y();
+ double z = kPick * voxSize.z();
+
+ // check that this point is within image dimensions
+
+ if (((x < 0) || (x > imageDims[0]*voxSize.x())) ||
+ ((y < 0) || (y > imageDims[1]*voxSize.y())) ||
+ ((z < 0) || (z > imageDims[2]*voxSize.z()))) {
+ QString msg = "The point (" + QString::number(x) + ", " + QString::number(y) + ", " + QString::number(z) + "), does not belong to the image " + img->getName() + ". Sorry...";
+ QMessageBox::warning(this, "Impossible Operation", msg);
+
+ updateTable();
+ return;
}
- // Else, he modified a real world coordinate
- else {
- double * voxelSize = img->getImageData()->GetSpacing();
- double * imageOrigin = img->getImageData()->GetOrigin();
- QVector3D imageBound = QVector3D(imageOrigin[0], imageOrigin[1], imageOrigin[2]) +
- QVector3D(imageDims[0], imageDims[1], imageDims[2])*QVector3D(voxelSize[0], voxelSize[1], voxelSize[2]);
-
- for (int i = 0; i < numberOfRows ; i++) {
- QVector3D v;
- v.setX(ui.pointsTableWidget->item(i, X_TABLE_INDEX)->text().toDouble());
- v.setY(ui.pointsTableWidget->item(i, Y_TABLE_INDEX)->text().toDouble());
- v.setZ(ui.pointsTableWidget->item(i, Z_TABLE_INDEX)->text().toDouble());
- if (((v.x() < imageOrigin[0]) || (v.x() > imageBound.x())) ||
- ((v.y() < imageOrigin[1]) || (v.y() > imageBound.y())) ||
- ((v.z() < imageOrigin[2]) || (v.z() > imageBound.z()))) {
- QString msg = tr("The point (") + QString::number(v.x()) +
- ", " + QString::number(v.y()) + ", " + QString::number(v.z()) + tr("), does not belong to the image ") + img->getName() + tr(". Sorry...");
- QMessageBox::warning(this, tr("Impossible Operation"), msg);
- liste->clear();
- updateTable();
- return;
- }
- liste->append(v);
- }
- pPM->changePixelIndexListFromRealCoordinates(liste);
-
+
+ // If right pixel, pick the image at this point
+ // Cheat ! Say that your are its axial slice...
+ img->getAxialSlices()->setSlice(z);
+ img->pixelPicked(x, y, z, img->getAxialSlices());
+ Application::refresh();
+ pPM->modifyPixel(i);
+
+ updateTable();
+
+ } else{ // Image Coordinates
+ int * imageDims = img->getImageData()->GetDimensions();
+ QVector3D voxSize = img->getVoxelSize();
+ // Change the pixel index at this row
+ // 3 possible case, either x, or y or z of one point have been manually changed
+ // We thus pick this new point
+ // For item number i, re-pick
+ double x = ui.pointsTableWidget->item(i, X_TABLE_INDEX)->text().toDouble();
+ double y = ui.pointsTableWidget->item(i, Y_TABLE_INDEX)->text().toDouble();
+ double z = ui.pointsTableWidget->item(i, Z_TABLE_INDEX)->text().toDouble();
+
+ // check that this point is within image dimensions
+
+ if (((x < 0) || (x > imageDims[0]*voxSize.x())) ||
+ ((y < 0) || (y > imageDims[1]*voxSize.y())) ||
+ ((z < 0) || (z > imageDims[2]*voxSize.z()))) {
+ QString msg = "The point (" + QString::number(x) + ", " + QString::number(y) + ", " + QString::number(z) + "), does not belong to the image " + img->getName() + ". Sorry...";
+ QMessageBox::warning(this, "Impossible Operation", msg);
+
+ updateTable();
+ return;
}
- }
+
+ // If right pixel, pick the image at this point
+ // Cheat ! Say that your are its axial slice...
+ img->getAxialSlices()->setSlice(z);
+ img->pixelPicked(x, y, z, img->getAxialSlices());
+ Application::refresh();
+ pPM->modifyPixel(i);
+
+ updateTable();
- updateTable();
+ }
}
diff --git a/sdk/actions/image/multipicking/MultiPickingWidget.h b/sdk/actions/image/multipicking/MultiPickingWidget.h
index d71643f..7f5dd00 100644
--- a/sdk/actions/image/multipicking/MultiPickingWidget.h
+++ b/sdk/actions/image/multipicking/MultiPickingWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/multipicking/MultiPickingWidget.ui b/sdk/actions/image/multipicking/MultiPickingWidget.ui
index d79cb48..513411a 100644
--- a/sdk/actions/image/multipicking/MultiPickingWidget.ui
+++ b/sdk/actions/image/multipicking/MultiPickingWidget.ui
@@ -6,7 +6,7 @@
<rect>
<x>0</x>
<y>0</y>
- <width>370</width>
+ <width>475</width>
<height>300</height>
</rect>
</property>
@@ -17,12 +17,26 @@
<item>
<layout class="QHBoxLayout" name="horizontalLayout_2">
<item>
+ <widget class="QRadioButton" name="indexRadioButton">
+ <property name="text">
+ <string>Voxell index</string>
+ </property>
+ <property name="icon">
+ <iconset resource="MultiPickingWidget.qrc">
+ <normaloff>:/resources/localCoords.png</normaloff>:/resources/localCoords.png</iconset>
+ </property>
+ <property name="checked">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
<widget class="QRadioButton" name="coordinatesRadioButton">
<property name="enabled">
<bool>true</bool>
</property>
<property name="text">
- <string>Real World Coordinates</string>
+ <string>Image Coordinates</string>
</property>
<property name="icon">
<iconset resource="MultiPickingWidget.qrc">
@@ -34,16 +48,9 @@
</widget>
</item>
<item>
- <widget class="QRadioButton" name="indexRadioButton">
+ <widget class="QRadioButton" name="worldRadioButton">
<property name="text">
- <string>Voxell index</string>
- </property>
- <property name="icon">
- <iconset resource="MultiPickingWidget.qrc">
- <normaloff>:/resources/localCoords.png</normaloff>:/resources/localCoords.png</iconset>
- </property>
- <property name="checked">
- <bool>true</bool>
+ <string>World Coordinates</string>
</property>
</widget>
</item>
@@ -81,18 +88,6 @@
<attribute name="horizontalHeaderStretchLastSection">
<bool>true</bool>
</attribute>
- <attribute name="horizontalHeaderStretchLastSection">
- <bool>true</bool>
- </attribute>
- <attribute name="horizontalHeaderCascadingSectionResizes">
- <bool>true</bool>
- </attribute>
- <attribute name="horizontalHeaderMinimumSectionSize">
- <number>40</number>
- </attribute>
- <attribute name="horizontalHeaderDefaultSectionSize">
- <number>40</number>
- </attribute>
</widget>
</item>
<item>
@@ -152,8 +147,6 @@
</layout>
</widget>
<tabstops>
- <tabstop>coordinatesRadioButton</tabstop>
- <tabstop>indexRadioButton</tabstop>
<tabstop>addButton</tabstop>
<tabstop>openCSVFilePushButton</tabstop>
<tabstop>saveButton</tabstop>
@@ -169,8 +162,8 @@
<slot>setPointTypeTable()</slot>
<hints>
<hint type="sourcelabel">
- <x>108</x>
- <y>76</y>
+ <x>254</x>
+ <y>31</y>
</hint>
<hint type="destinationlabel">
<x>400</x>
@@ -185,8 +178,8 @@
<slot>addPixelinTable()</slot>
<hints>
<hint type="sourcelabel">
- <x>95</x>
- <y>249</y>
+ <x>107</x>
+ <y>245</y>
</hint>
<hint type="destinationlabel">
<x>116</x>
@@ -217,8 +210,8 @@
<slot>savePixelList()</slot>
<hints>
<hint type="sourcelabel">
- <x>359</x>
- <y>289</y>
+ <x>462</x>
+ <y>287</y>
</hint>
<hint type="destinationlabel">
<x>402</x>
diff --git a/sdk/actions/image/multipicking/PickedPixelMap.cpp b/sdk/actions/image/multipicking/PickedPixelMap.cpp
index 7de0365..43dd1ac 100644
--- a/sdk/actions/image/multipicking/PickedPixelMap.cpp
+++ b/sdk/actions/image/multipicking/PickedPixelMap.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,110 +35,186 @@ using namespace camitk;
PickedPixelMap::PickedPixelMap (ImageComponent *imageComp) {
image=imageComp;
pixelIndexList = new QList<QVector3D>();
+ coordIndexList = new QList<QVector3D>();
+ realCoordList = new QList<QVector3D>();
+ pixelValueList = new QList<double>();
+
}
//------------- Destructor -------------
-PickedPixelMap::~PickedPixelMap() {}
+PickedPixelMap::~PickedPixelMap() {
+ if (pixelIndexList != NULL) {
+ delete pixelIndexList;
+ }
+ if (coordIndexList != NULL) {
+ delete coordIndexList;
+ }
+ if (realCoordList != NULL) {
+ delete realCoordList;
+ }
+ if (pixelValueList != NULL) {
+ delete pixelValueList;
+ }
+}
//---------------- addPixel --------------------
void PickedPixelMap::addPixel() {
+ int whereToInsert = pixelIndexList->size();
+
// get the last picked pixel index
int i, j, k;
- image->getLastPixelPicked (&i, &j, &k);
- QVector3D lastIndex = QVector3D (i,j,k);
+ image->getLastPixelPicked(&i, &j, &k);
// check validity
if (i != -1 && j != -1 && k != -1) {
+ // If the point is actually within the image
+ QVector3D lastPoint = QVector3D(i, j, k);
+
//insert the new point in the list
- pixelIndexList->insert (pixelIndexList->size(),lastIndex);
+ pixelIndexList->insert(whereToInsert, lastPoint);
+
+ double x, y, z;
+ image->getLastPointPickedImageCoords(&x, &y, &z);
+ lastPoint = QVector3D(x, y, z);
+ coordIndexList->insert(whereToInsert, lastPoint);
+
+ image->getLastPointPickedWorldCoords(&x, &y, &z);
+ lastPoint = QVector3D(x, y, z);
+ realCoordList->insert(whereToInsert, lastPoint);
+
+ // We consider here only gray level images, so we take the first component.
+ double value = image->getImageData()->GetScalarComponentAsDouble(i, j, k,0);
+ pixelValueList->insert(whereToInsert, value);
+
}
}
-//------------------------ convertIndexToCoordinates ------------------------
-QVector3D PickedPixelMap::convertIndexToCoordinates (int i, int j, int k) {
- QVector3D realCoord;
-
- // get the size of voxel and the origin
- QVector3D voxelSize = image->getVoxelSize();
- QVector3D imageOrigin = image->getImageOrigin();
-
- // transform pixel index to 3D real coordinates
- // (index pixel + 0.5) * size of voxel + imageOrigin position = real coordinates
- realCoord.setX ((i + 0.5)*voxelSize.x() + imageOrigin.x());
- realCoord.setY ((j + 0.5)*voxelSize.y() + imageOrigin.y());
- realCoord.setZ ((k + 0.5)*voxelSize.z() + imageOrigin.z());
-
- return realCoord;
-}
-
-
-QVector3D PickedPixelMap::convertCoordinatesToIndex(double x, double y, double z) {
- QVector3D index;
-
- // get the size of voxel and the origin
- QVector3D voxelSize = image->getVoxelSize();
- QVector3D imageOrigin = image->getImageOrigin();
-
- // transform 3D real coordinates to index
- // real coords = (index + 0.5) * voxelSize + imageOrigin
- // index = (real coords - imageOrigin) / voxelSize - 0.5
- index.setX((int) ((x - imageOrigin.x()) / voxelSize.x() - 0.5));
- index.setY((int) ((y - imageOrigin.y()) / voxelSize.y() - 0.5));
- index.setZ((int) ((z - imageOrigin.z()) / voxelSize.z() - 0.5));
-
- return index;
-
-}
+////------------------------ convertIndexToCoordinates ------------------------
+//QVector3D PickedPixelMap::convertIndexToCoordinates (int i, int j, int k) {
+// QVector3D realCoord;
+//
+// // get the size of voxel and the origin
+// QVector3D voxelSize = image->getVoxelSize();
+//
+// // transform pixel index to 3D image coordinates
+// // (index pixel) * size of voxel = real coordinates
+// realCoord.setX(i*voxelSize.x());
+// realCoord.setY(j*voxelSize.y());
+// realCoord.setZ(k*voxelSize.z());
+//
+// return realCoord;
+//}
+//
+//
+//QVector3D PickedPixelMap::convertCoordinatesToIndex(double x, double y, double z) {
+// QVector3D index;
+//
+// // get the size of voxel and the origin
+// QVector3D voxelSize = image->getVoxelSize();
+//
+// // transform 3D image coordinates to index
+// // real coords = (index + 0.5) * voxelSize
+// // index = (real coords) / voxelSize
+// index.setX((int)((x / voxelSize.x())+0.5));
+// index.setY((int)((y / voxelSize.y())+0.5));
+// index.setZ((int)((z / voxelSize.z())+0.5));
+//
+// return index;
+//
+//}
//-------------------- getCoordIndexList -----------------------
QList<QVector3D>* PickedPixelMap::getCoordIndexList() {
- QList<QVector3D> *coord = new QList<QVector3D>();
-
- for (int i = 0; i<pixelIndexList->size(); i++) {
- // For each point in the list of index, coordinates are calculated
- coord->insert (i,convertIndexToCoordinates (pixelIndexList->value (i).x(),pixelIndexList->value (i).y(),pixelIndexList->value (i).z()));
- }
-
- return coord;
+ return coordIndexList;
}
QList<double> * PickedPixelMap::getPixelValueList() {
- QList<double> * values = new QList<double>();
-
- for (int i = 0; i < pixelIndexList->size(); i++) {
- // NOTE if this was a colored image, this would be the red value (the last parameter
- // of GetScalarComponentAsDouble is the index of the color component)
- double val = image->getImageData()->GetScalarComponentAsDouble(pixelIndexList->value(i).x(),
- pixelIndexList->value(i).y(),
- pixelIndexList->value(i).z(),
- 0);
- values->insert(i, val);
- }
-
- return values;
+ return pixelValueList;
+//
+// QList<QVector3D>* coordList = getPixelIndexList();
+//
+// QList<double> * values = new QList<double>();
+//
+// for (int i = 0; i < coordList->size(); i++) {
+// // NOTE if this was a colored image, this would be the red value (the last parameter
+// // of GetScalarComponentAsDouble is the index of the color component)
+// double val = image->getImageData()->GetScalarComponentAsDouble(coordList->value(i).x(),
+// coordList->value(i).y(),
+// coordList->value(i).z(),
+// 0);
+// values->insert(i, val);
+// }
+//
+// return values;
}
//----------------------- getCoordIndexList --------------------
QList<QVector3D>* PickedPixelMap::getPixelIndexList() {
return pixelIndexList;
+// QList<QVector3D> *coord = new QList<QVector3D>();
+//
+// for (int i = 0; i<pixelIndexList->size(); i++) {
+// // For each point in the list of coordinates, indexes are calculated
+// coord->insert(i, convertCoordinatesToIndex(pixelIndexList->value(i).x(), pixelIndexList->value(i).y(), pixelIndexList->value(i).z()));
+// }
+//
+// return coord;
+
+}
+QList<QVector3D>* PickedPixelMap::getRealWorldList() {
+ return realCoordList;
}
//-------------- modifyPixel -----------------------------------
void PickedPixelMap::modifyPixel (int index) {
- // get the last picked pixel index
- int i, j, k;
- image->getLastPixelPicked (&i, &j, &k);
- QVector3D lastIndex = QVector3D (i,j,k);
-
- // check validity
- if (i != -1 && j != -1 && k != -1 && (index >=0 && index< pixelIndexList->size())) {
- pixelIndexList->replace (index,lastIndex);
+ if ((index >=0) && (index< pixelIndexList->size())) {
+ // get the last picked pixel index
+ int i, j, k;
+ image->getLastPixelPicked(&i, &j, &k);
+
+ // check validity
+ if (i != -1 && j != -1 && k != -1) {
+ // If the point is actually within the image
+ QVector3D lastPoint = QVector3D(i, j, k);
+
+ //replace the new point in the list
+ pixelIndexList->replace(index, lastPoint);
+
+ double x, y, z;
+ image->getLastPointPickedImageCoords(&x, &y, &z);
+ lastPoint = QVector3D(x, y, z);
+ coordIndexList->replace(index, lastPoint);
+
+ image->getLastPointPickedWorldCoords(&x, &y, &z);
+ realCoordList->replace(index, lastPoint);
+
+ // We consider here only gray level images, so we take the first component.
+ double value = image->getImageData()->GetScalarComponentAsDouble(i, j, k,0);
+ pixelValueList->replace(index, value);
+
+ }
}
+
+// // get the last picked pixel index
+// int i, j, k;
+// image->getLastPixelPicked (&i, &j, &k);
+//
+// double x, y, z;
+// image->getLastPointPickedImageCoords(&x, &y, &z);
+// QVector3D lastPoint = QVector3D(x, y, z);
+//
+// // check validity
+// if (i != -1 && j != -1 && k != -1 && (index >=0 && index< pixelIndexList->size())) {
+// pixelIndexList->replace (index,lastPoint);
+// }
}
//------------------ removePixel ----------------------------
void PickedPixelMap::removePixel (int index) {
if (index >=0 && index< pixelIndexList->size()) {
pixelIndexList->removeAt (index);
+ coordIndexList->removeAt(index);
+ realCoordList->removeAt(index);
+ pixelValueList->removeAt(index);
}
}
@@ -150,7 +226,7 @@ void PickedPixelMap::savePixelList (QString fileName) {
if (fileNameInfo.suffix() != "csv")
fileName += ".csv";
- QVector3D pix2Coord;
+ QVector3D coord2pix;
// write the points in a csv file
// the form is : index (int) | i (int) | j (int) | k (int) | x (double) | y (double) | z (double) |
ofstream myFile;
@@ -158,15 +234,37 @@ void PickedPixelMap::savePixelList (QString fileName) {
// open the file to write
char separator=',';
myFile.open (fileName.toStdString().c_str());
- myFile << "index" << separator << "i" << separator << "j" << separator << "k" << separator << "x" <<separator << "y" << separator << "z" <<endl;
+ myFile << "index" << separator << "i" << separator << "j" << separator << "k" << separator << "x" <<separator << "y" << separator << "z" << separator << "rx" << separator << "ry" << separator << "rz" << separator << "val" << endl;
if (pixelIndexList != NULL) {
- for (int i = 0; i < pixelIndexList->size(); i++) {
- pix2Coord = convertIndexToCoordinates (pixelIndexList->value (i).x(),pixelIndexList->value (i).y(),pixelIndexList->value (i).z());
- myFile << i << separator;
- myFile << (int) pixelIndexList->value (i).x() << separator << (int) pixelIndexList->value (i).y() << separator << (int) pixelIndexList->value (i).z() << separator;
- myFile << pix2Coord.x() << separator << pix2Coord.y() << separator << pix2Coord.z() << endl;
+ for (int idx = 0; idx < pixelIndexList->size(); idx++) {
+ myFile << idx << separator;
+ // Pixel Index
+ myFile << pixelIndexList->value(idx).x() << separator;
+ myFile << pixelIndexList->value(idx).y() << separator;
+ myFile << pixelIndexList->value(idx).z() << separator;
+
+ // Image Coords
+ myFile << coordIndexList->value(idx).x() << separator;
+ myFile << coordIndexList->value(idx).y() << separator;
+ myFile << coordIndexList->value(idx).z() << separator;
+
+ // Real Coords
+ myFile << realCoordList->value(idx).x() << separator;
+ myFile << realCoordList->value(idx).y() << separator;
+ myFile << realCoordList->value(idx).z() << separator;
+
+ // Value
+ myFile << pixelValueList->value(idx) << endl;
+
}
+// for (int i = 0; i < pixelIndexList->size(); i++) {
+// coord2pix = convertCoordinatesToIndex(pixelIndexList->value(i).x(), pixelIndexList->value(i).y(), pixelIndexList->value(i).z());
+// myFile << i << separator;
+//
+// myFile << coord2pix.x() << separator << coord2pix.y() << separator << coord2pix.z() << separator;
+// myFile << (int)pixelIndexList->value(i).x() << separator << (int)pixelIndexList->value(i).y() << separator << (int)pixelIndexList->value(i).z() << endl;
+// }
}
// close after
@@ -183,14 +281,15 @@ void PickedPixelMap::openPixelList (QString fileName) {
return;
}
- if (pixelIndexList==NULL) {
- pixelIndexList = new QList<QVector3D>();
- }
-
QTextStream in(&file);
+
+ resetPixelList();
while (! in.atEnd()) {
int i, j, k;
+ double x, y, z;
+ double rx, ry, rz;
+ double val;
// We process the file line by line
QString line = in.readLine();
@@ -199,7 +298,7 @@ void PickedPixelMap::openPixelList (QString fileName) {
QStringList liste = line.split(",");
QString s = liste.at(0);
- if ( (s != QString("index")) && (liste.size() == 7)) {
+ if ( (s != QString("index")) && (liste.size() == 11)) {
s = liste.at(1);
i = s.toInt();
s = liste.at(2);
@@ -207,15 +306,26 @@ void PickedPixelMap::openPixelList (QString fileName) {
s = liste.at(3);
k = s.toInt();
s = liste.at(4);
-
+ x = s.toDouble();
s = liste.at(5);
-
+ y = s.toDouble();
s = liste.at(6);
-
-
- //insert the new point in the list
- QVector3D lastIndex = QVector3D (i,j,k);
- pixelIndexList->insert (pixelIndexList->size(),lastIndex);
+ z = s.toDouble();
+ s = liste.at(7);
+ rx = s.toDouble();
+ s = liste.at(8);
+ ry = s.toDouble();
+ s = liste.at(9);
+ rz = s.toDouble();
+ s = liste.at(10);
+ val = s.toDouble();
+
+ //insert the new points in the list
+ int whereToInsert = pixelIndexList->size();
+ pixelIndexList->insert (whereToInsert,QVector3D(i, j, k));
+ coordIndexList->insert(whereToInsert, QVector3D(x, y, z));
+ realCoordList->insert(whereToInsert, QVector3D(rx, ry, rz));
+ pixelValueList->insert(whereToInsert, val);
}
}
}
@@ -228,31 +338,37 @@ ImageComponent* PickedPixelMap::getImage() {
}
void PickedPixelMap::resetPixelList() {
- // Empty the list if it is not already empty
- if ((pixelIndexList != NULL) && !(pixelIndexList->isEmpty())) {
- pixelIndexList->erase(pixelIndexList->begin(), pixelIndexList->end());
- }
-
- if (pixelIndexList == NULL)
- pixelIndexList = new QList<QVector3D>();
+ pixelIndexList->clear();
+ coordIndexList->clear();
+ realCoordList->clear();
+ pixelValueList->clear();
+// // Empty the list if it is not already empty
+// if ((pixelIndexList != NULL) && !(pixelIndexList->isEmpty())) {
+// pixelIndexList->erase(pixelIndexList->begin(), pixelIndexList->end());
+// }
+//
+// if (pixelIndexList == NULL)
+// pixelIndexList = new QList<QVector3D>();
}
void PickedPixelMap::changePixelIndexList(QList<QVector3D> *liste) {
resetPixelList();
- for (int i = 0 ; i < liste->size(); i++) {
- pixelIndexList->append(liste->at(i));
- }
+// for (int i = 0; i < liste->size(); i++) {
+// QVector3D index = convertIndexToCoordinates(liste->at(i).x(),
+// liste->at(i).y(),
+// liste->at(i).z());
+// pixelIndexList->append(index);
+// }
+//
+
}
void PickedPixelMap::changePixelIndexListFromRealCoordinates(QList<QVector3D> *listeOfRealCoords) {
resetPixelList();
- for (int i = 0; i < listeOfRealCoords->size(); i++) {
- QVector3D index = convertCoordinatesToIndex(listeOfRealCoords->at(i).x(),
- listeOfRealCoords->at(i).y(),
- listeOfRealCoords->at(i).z());
- pixelIndexList->append(index);
- }
+// for (int i = 0; i < listeOfRealCoords->size(); i++) {
+// pixelIndexList->append(listeOfRealCoords->at(i));
+// }
}
diff --git a/sdk/actions/image/multipicking/PickedPixelMap.h b/sdk/actions/image/multipicking/PickedPixelMap.h
index aa10733..a5ca910 100644
--- a/sdk/actions/image/multipicking/PickedPixelMap.h
+++ b/sdk/actions/image/multipicking/PickedPixelMap.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,6 +40,14 @@
* This class is dedicated to manage an ImageComponent with a list of selected/picked pixels.
* This class allows one to manage a generic list of pixels too (add, remove, modify and save some points).
*
+ * Since Frame Usage in CamiTK, PickedPixelMap stores 4 lists:
+ * - pixelIndexList which stores the picked pixel position as image indices, i.e. integers number of voxels since the image origin (line first, then columns, then depth)
+ * - localCoordIndexList which stores the pixel position as image real coordinates with the zero of the image at the origin of the image, i.e. this list takes voxel size into account
+ * - realCoordIndexList which stores the pixel positions in the real world frame, that may not be the image frame.
+ * - pixelValue: for each index/coord/real coord, stores the gray level value of the image.
+ *
+ * No convertion between the lists is done in this class. These conversions are done at pixel clickin by the ImageComponent.
+ *
*/
class MULTIPICKING_API PickedPixelMap {
@@ -80,6 +88,9 @@ public:
/// return the list of coordinates pixel index
QList<QVector3D>* getCoordIndexList();
+
+ /// return the list of coordinates in real world frame
+ QList<QVector3D>* getRealWorldList();
/// return the liste of pixel values
QList<double> * getPixelValueList();
@@ -90,31 +101,48 @@ public:
/// Empties the pixel list.
void resetPixelList();
+ // TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+ /** Deprecated.
/// Change pixel list (copy the one given in parameters)
+ */
void changePixelIndexList(QList<QVector3D> * liste);
- /// Change pixel list from a list of real coordinates
+
+ // TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+ /** Deprecated.
+ /// Change pixel list from a list of real coordinates
+ */
void changePixelIndexListFromRealCoordinates(QList<QVector3D> * listeOfRealCoords);
private:
- /** conversion pixel index to coordinates
- * @param i the first index pixel to retrieve x in coordinate
- * @param j the second index pixel to retrieve y in coordinate
- * @param k the third index pixel to retrieve z in coordinate
- */
- QVector3D convertIndexToCoordinates (int i, int j, int k);
-
- /** conversion pixel index to coordinates
- * @param x
- * @param y
- * @param z
- */
- QVector3D convertCoordinatesToIndex (double x, double y, double z);
+ // No more conversion in this class. Conversions are asked to ImageComponent while picking...
+// /** conversion pixel index to coordinates
+// * @param i the first index pixel to retrieve x in coordinate
+// * @param j the second index pixel to retrieve y in coordinate
+// * @param k the third index pixel to retrieve z in coordinate
+// */
+// QVector3D convertIndexToCoordinates (int i, int j, int k);
+//
+// /** conversion pixel index to coordinates
+// * @param x
+// * @param y
+// * @param z
+// */
+// QVector3D convertCoordinatesToIndex (double x, double y, double z);
/// this is a list of pixels (as i,j,k indexes in the 3 directions)
QList<QVector3D> *pixelIndexList;
+
+ /// list of corresponding image coordinates, i.e. taking voxel size into account, but in the local frame of the image
+ QList<QVector3D> *coordIndexList;
+
+ /// list of corresponding coordinates in real world frame.
+ QList<QVector3D> *realCoordList;
+
+ /// list of corresponding pixel values
+ QList<double> *pixelValueList;
/// ImageComponent where the pixels are clicked
camitk::ImageComponent *image;
diff --git a/sdk/actions/image/pixelcolorchanger/CMakeLists.txt b/sdk/actions/image/pixelcolorchanger/CMakeLists.txt
index 7cb5793..6fb0d03 100644
--- a/sdk/actions/image/pixelcolorchanger/CMakeLists.txt
+++ b/sdk/actions/image/pixelcolorchanger/CMakeLists.txt
@@ -4,5 +4,5 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Allows changing the color of the image pixels"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
\ No newline at end of file
diff --git a/sdk/actions/image/pixelcolorchanger/PixelColorChanger.cpp b/sdk/actions/image/pixelcolorchanger/PixelColorChanger.cpp
index b4b9c66..4fbacc9 100644
--- a/sdk/actions/image/pixelcolorchanger/PixelColorChanger.cpp
+++ b/sdk/actions/image/pixelcolorchanger/PixelColorChanger.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/pixelcolorchanger/PixelColorChanger.h b/sdk/actions/image/pixelcolorchanger/PixelColorChanger.h
index 5557b26..70eb1a0 100644
--- a/sdk/actions/image/pixelcolorchanger/PixelColorChanger.h
+++ b/sdk/actions/image/pixelcolorchanger/PixelColorChanger.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.cpp b/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.cpp
index 0586758..4793265 100644
--- a/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.cpp
+++ b/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,10 +31,6 @@
#include <ImageComponent.h>
using namespace camitk;
-
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(pixelcolorchanger, PixelColorChangerExtension);
-
// -------------------- init --------------------
void PixelColorChangerExtension::init() {
registerNewAction(PixelColorChanger);
diff --git a/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.h b/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.h
index cc5ccb1..1ba210e 100644
--- a/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.h
+++ b/sdk/actions/image/pixelcolorchanger/PixelColorChangerExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,14 +32,15 @@
class PixelColorChangerExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.pixelcolorchanger")
public:
/// the constructor
- PixelColorChangerExtension() : ActionExtension() {};
+ PixelColorChangerExtension() : ActionExtension() {}
/// the destructor
- virtual ~PixelColorChangerExtension() {};
+ virtual ~PixelColorChangerExtension() {}
/// initialize all the actions
virtual void init();
@@ -57,4 +58,4 @@ public:
};
-#endif // PIXELCOLORCHANGEREXTENSION_H
\ No newline at end of file
+#endif // PIXELCOLORCHANGEREXTENSION_H
diff --git a/sdk/actions/image/reconstruction/CMakeLists.txt b/sdk/actions/image/reconstruction/CMakeLists.txt
index 69bc618..e0e7ad0 100644
--- a/sdk/actions/image/reconstruction/CMakeLists.txt
+++ b/sdk/actions/image/reconstruction/CMakeLists.txt
@@ -3,7 +3,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Use marching cube algorithm to create a surfacic mesh from a volumic image"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/image/reconstruction/ImageReconstructionAction.cpp b/sdk/actions/image/reconstruction/ImageReconstructionAction.cpp
index 783a574..1fe76f6 100644
--- a/sdk/actions/image/reconstruction/ImageReconstructionAction.cpp
+++ b/sdk/actions/image/reconstruction/ImageReconstructionAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -107,7 +107,12 @@ Action::ApplyStatus ImageReconstructionAction::apply() {
// compute model
vtkSmartPointer<vtkPointSet> resultPointSet = this->getMarchingCubesReconstruction();
- new MeshComponent(resultPointSet, myComponent->getName() + "_mesh");
+
+ MeshComponent* outputComp = new MeshComponent(resultPointSet, myComponent->getName() + "_mesh");
+
+ // consider frame policy on new image created
+ Action::applyTargetPosition(myComponent, outputComp);
+
Application::refresh();
return SUCCESS;
@@ -155,12 +160,10 @@ vtkSmartPointer<vtkPointSet> ImageReconstructionAction::getMarchingCubesReconstr
resampleFilter->SetAxisMagnificationFactor(2, z_magnification);
}
- resampleFilter->SetInput(originalImageData);
+ resampleFilter->SetInputData(originalImageData);
resampleFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
currentData = resampleFilter->GetOutput();
-
- currentData->Update();
}
// The filter we have chosen to use to compute 3D isosurface of the volume image
@@ -168,7 +171,7 @@ vtkSmartPointer<vtkPointSet> ImageReconstructionAction::getMarchingCubesReconstr
// create an instance of vtkMarchingCubes as it delegates to the fastest subclass
// for a particular dataset type.
vtkSmartPointer<vtkMarchingCubes> mcSurface = vtkSmartPointer<vtkMarchingCubes>::New();
- mcSurface->SetInput(currentData);
+ mcSurface->SetInputData(currentData);
mcSurface->AddObserver(vtkCommand::ProgressEvent, progressCallback);
mcSurface->SetValue(0, isoValue);
@@ -189,16 +192,15 @@ vtkSmartPointer<vtkPointSet> ImageReconstructionAction::getMarchingCubesReconstr
if (keepLargestConnectedComponent) {
connectivityFilter = vtkPolyDataConnectivityFilter::New();
- connectivityFilter->SetInput(mcSurface->GetOutput());
+ connectivityFilter->SetInputData(mcSurface->GetOutput());
connectivityFilter->SetExtractionModeToLargestRegion();
- normalsFilter->SetInput(connectivityFilter->GetOutput());
+ normalsFilter->SetInputData(connectivityFilter->GetOutput());
} else
- normalsFilter->SetInput(mcSurface->GetOutput());
+ normalsFilter->SetInputData(mcSurface->GetOutput());
normalsFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
vtkSmartPointer<vtkPointSet> resultPointSet = normalsFilter->GetOutput();
- resultPointSet->Update();
// One can make efficient data visualization using vtkTriangleFilter
// and vtkStripper. But first, let us try without...
diff --git a/sdk/actions/image/reconstruction/ImageReconstructionAction.h b/sdk/actions/image/reconstruction/ImageReconstructionAction.h
index ece840e..41f832f 100644
--- a/sdk/actions/image/reconstruction/ImageReconstructionAction.h
+++ b/sdk/actions/image/reconstruction/ImageReconstructionAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/reconstruction/ReconstructionExtension.cpp b/sdk/actions/image/reconstruction/ReconstructionExtension.cpp
index f25cae3..60c970f 100644
--- a/sdk/actions/image/reconstruction/ReconstructionExtension.cpp
+++ b/sdk/actions/image/reconstruction/ReconstructionExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,10 +31,6 @@
#include <ImageComponent.h>
using namespace camitk;
-
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(reconstruction, ReconstructionExtension);
-
// -------------------- init --------------------
void ReconstructionExtension::init() {
registerNewAction(ImageReconstructionAction);
diff --git a/sdk/actions/image/reconstruction/ReconstructionExtension.h b/sdk/actions/image/reconstruction/ReconstructionExtension.h
index c05153b..49720fe 100644
--- a/sdk/actions/image/reconstruction/ReconstructionExtension.h
+++ b/sdk/actions/image/reconstruction/ReconstructionExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,14 +39,15 @@
*/
class ReconstructionExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.reconstruction")
public:
/// the constructor
- ReconstructionExtension() : ActionExtension() {};
+ ReconstructionExtension() : ActionExtension() {}
/// the destructor
- virtual ~ReconstructionExtension() {};
+ virtual ~ReconstructionExtension() {}
/// initialize all the actions
virtual void init();
@@ -64,4 +65,4 @@ public:
};
-#endif // RECONSTRUCTIONEXTENSION_H
\ No newline at end of file
+#endif // RECONSTRUCTIONEXTENSION_H
diff --git a/sdk/actions/image/reorientimage/CMakeLists.txt b/sdk/actions/image/reorientimage/CMakeLists.txt
index 4a854a6..c814423 100644
--- a/sdk/actions/image/reorientimage/CMakeLists.txt
+++ b/sdk/actions/image/reorientimage/CMakeLists.txt
@@ -1,9 +1,16 @@
# Call CamiTK CMake Macro to define the action
-camitk_extension(ACTION_EXTENSION
- NEEDS_COMPONENT_EXTENSION vtkmesh
- INCLUDE_DIRECTORIES ../../../components/vtkmesh
- TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh diaphragm.pml head1.STL
- )
+camitk_extension( ACTION_EXTENSION
+ NEEDS_COMPONENT_EXTENSION vtkmesh
+ TEST_APPLICATION ${APPLICATION_TEST_ACTION}
+ TEST_FILES bassin.msh diaphragm.pml head1.STL liver-smooth.obj Mesh.off mixed_3D_beam.msh robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
+ CEP_NAME SDK
+ DESCRIPTION "Allows one to reorient a volumic image."
+ )
+# As the Reorient image action, when applied, needs its dialog box initialized, it cannot
+# pass this test.
+# Remove when action reorient image has been updated consequently
+if(NOT PACKAGING_NSIS)
+ set_tests_properties("action-reorientimage-LEVEL1-15" PROPERTIES WILL_FAIL true)
+endif()
\ No newline at end of file
diff --git a/sdk/actions/image/reorientimage/ReorientImage.cpp b/sdk/actions/image/reorientimage/ReorientImage.cpp
index bdf77a2..f518877 100644
--- a/sdk/actions/image/reorientimage/ReorientImage.cpp
+++ b/sdk/actions/image/reorientimage/ReorientImage.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -76,7 +76,7 @@ static const QString SMeaning = "<b>Superior</b> <i>(head of the patient)</i>
// --------------- constructor -------------------
ReorientImage::ReorientImage(ActionExtension* extension) : Action(extension) {
setName("Reorient Medical Image");
- setDescription(tr("This action allows to re-orient a medical image according to Dicom RCS (Reference Coordinates System) system."));
+ setDescription(tr("This action re-orients a medical image according to Dicom RCS (Reference Coordinates System)."));
setComponent("ImageComponent");
// Setting classification family and tags
@@ -135,7 +135,7 @@ ReorientImage::~ReorientImage() {
}
// --------------- initDialog -------------------
-void ReorientImage::initDialog() {
+void ReorientImage::initDialog() {
dialog = new QDialog();
//-- init user interface
@@ -195,7 +195,7 @@ void ReorientImage::initInternalViewer() {
buildTransforms();
// get the nice vtk 3D representation from file
buildGeometries();
-
+
// Set up the 3D viewer to visualize actual origin/orientation locations
internalViewer = InteractiveViewer::getNewViewer("Image Orientation Viewer", InteractiveViewer::GEOMETRY_VIEWER);
internalViewer->setHighlightMode(InteractiveViewer::OFF);
@@ -224,9 +224,9 @@ void ReorientImage::rcsChanged(const QString index) {
// --------------- modelChanged -------------------
void ReorientImage::modelChanged(bool displayMaleModel) {
- if (femaleModel==NULL || maleModel==NULL)
+ if (femaleModel==NULL || maleModel==NULL)
return;
-
+
if (displayMaleModel) {
internalViewer->getRendererWidget()->removeProp(femaleModel->getActor(InterfaceGeometry::Surface));
internalViewer->getRendererWidget()->addProp(maleModel->getActor(InterfaceGeometry::Surface));
@@ -250,6 +250,12 @@ QWidget * ReorientImage::getWidget() {
//--------------- apply ------------
Action::ApplyStatus ReorientImage::apply() {
+
+ if(!dialog) {
+ CAMITK_ERROR("ReorientImage", "process", "Calling apply() without having initializing its QWidget => this is prohibited at the moment, aborting ...");
+ return ABORTED;
+ }
+
ImageComponent * img = dynamic_cast<ImageComponent *> (getTargets().last());
return process(img);
@@ -272,6 +278,7 @@ Action::ApplyStatus ReorientImage::process( ImageComponent * image) {
ui.zDirection->setText(lettersMeaning.value(zLetter));
ImageOrientationHelper::PossibleImageOrientations orient = (ImageOrientationHelper::PossibleImageOrientations) (index);
+
// 2- Compute the reslice matrix according to the new orientation
double * imgSpacing = image->getImageData()->GetSpacing();
int * imgDims = image->getImageData()->GetDimensions();
@@ -287,12 +294,11 @@ Action::ApplyStatus ReorientImage::process( ImageComponent * image) {
// 3- Create a new ImageComponent with the resliced image.
vtkSmartPointer<vtkImageReslice> imageResliceFilter = vtkSmartPointer<vtkImageReslice>::New();
- imageResliceFilter->SetInput(image->getImageData());
+ imageResliceFilter->SetInputData(image->getImageData());
imageResliceFilter->SetOutputDimensionality(3);
imageResliceFilter->SetResliceAxes(transform->GetMatrix());
vtkSmartPointer<vtkImageData> newData = imageResliceFilter->GetOutput();
- newData->Update();
if (ui.noNewImageCheckBox->isChecked()) {
image->replaceImageData(newData);
@@ -465,8 +471,7 @@ void ReorientImage::buildGeometries() {
QString femaleModelFilename = globalTestDir.canonicalPath() + "/female.vtk";
femaleModel = VtkMeshUtil::vtkToGeometry(femaleModelFilename.toStdString());
femaleModel->setColor(1.0, 0.75, 0.64);
- }
- else {
+ } else {
CAMITK_WARNING("ReorientImage", "buildGeometries", "3D Model VTK files not found");
}
}
diff --git a/sdk/actions/image/reorientimage/ReorientImage.h b/sdk/actions/image/reorientimage/ReorientImage.h
index 66fe92b..e93915a 100644
--- a/sdk/actions/image/reorientimage/ReorientImage.h
+++ b/sdk/actions/image/reorientimage/ReorientImage.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/reorientimage/ReorientImageExtension.cpp b/sdk/actions/image/reorientimage/ReorientImageExtension.cpp
index c401369..1939c45 100644
--- a/sdk/actions/image/reorientimage/ReorientImageExtension.cpp
+++ b/sdk/actions/image/reorientimage/ReorientImageExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,9 +27,6 @@
// include generated actions headers
#include "ReorientImage.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2 ( reorientimageextension, ReorientImageExtension );
-
// --------------- getActions -------------------
void ReorientImageExtension::init() {
// Creating and registering the instance of MoveFrame
diff --git a/sdk/actions/image/reorientimage/ReorientImageExtension.h b/sdk/actions/image/reorientimage/ReorientImageExtension.h
index 2e5bebd..d8ad278 100644
--- a/sdk/actions/image/reorientimage/ReorientImageExtension.h
+++ b/sdk/actions/image/reorientimage/ReorientImageExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,14 +29,15 @@
class ReorientImageExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.reorientimage")
public:
/// Constructor
- ReorientImageExtension() : camitk::ActionExtension() {};
+ ReorientImageExtension() : camitk::ActionExtension() {}
/// Destructor
- virtual ~ReorientImageExtension() {};
+ virtual ~ReorientImageExtension() {}
/// Method returning the action extension name
virtual QString getName() {
@@ -45,7 +46,7 @@ public:
/// Method returning the action extension descrption
virtual QString getDescription() {
- return "This extention allows to test and get familiar with the frame environment.";
+ return "This extension can be used to test and get familiar with the frame environment.";
};
/// initialize all the actions
diff --git a/sdk/actions/image/reorientimage/resources/translate/translate_en.ts b/sdk/actions/image/reorientimage/resources/translate/translate_en.ts
index b030c5c..af50f5e 100644
--- a/sdk/actions/image/reorientimage/resources/translate/translate_en.ts
+++ b/sdk/actions/image/reorientimage/resources/translate/translate_en.ts
@@ -90,7 +90,7 @@
</message>
<message>
<location filename="../../ReorientImage.cpp" line="79"/>
- <source>This action allows to re-orient a medical image according to Dicom RCS (Reference Coordinates System) system.</source>
+ <source>This action re-orients a medical image according to Dicom RCS (Reference Coordinates System).</source>
<translation type="unfinished"></translation>
</message>
<message>
diff --git a/sdk/actions/image/reorientimage/resources/translate/translate_fr.ts b/sdk/actions/image/reorientimage/resources/translate/translate_fr.ts
index 5a023c5..8ed6103 100644
--- a/sdk/actions/image/reorientimage/resources/translate/translate_fr.ts
+++ b/sdk/actions/image/reorientimage/resources/translate/translate_fr.ts
@@ -90,7 +90,7 @@
</message>
<message>
<location filename="../../ReorientImage.cpp" line="79"/>
- <source>This action allows to re-orient a medical image according to Dicom RCS (Reference Coordinates System) system.</source>
+ <source>This action re-orients a medical image according to Dicom RCS (Reference Coordinates System).</source>
<translation type="unfinished"></translation>
</message>
<message>
diff --git a/sdk/actions/image/showin3d/CMakeLists.txt b/sdk/actions/image/showin3d/CMakeLists.txt
index f97019f..5faea74 100644
--- a/sdk/actions/image/showin3d/CMakeLists.txt
+++ b/sdk/actions/image/showin3d/CMakeLists.txt
@@ -2,8 +2,8 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Display in 3D the component"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL
- )
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
+ )
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
diff --git a/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.cpp b/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.cpp
index 102e56e..21b3774 100644
--- a/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.cpp
+++ b/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.h b/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.h
index 7974ece..ce1b178 100644
--- a/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.h
+++ b/sdk/actions/image/showin3d/ShowArbitrarySliceIn3D.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowAxialSliceIn3D.cpp b/sdk/actions/image/showin3d/ShowAxialSliceIn3D.cpp
index f4131ca..002acce 100644
--- a/sdk/actions/image/showin3d/ShowAxialSliceIn3D.cpp
+++ b/sdk/actions/image/showin3d/ShowAxialSliceIn3D.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowAxialSliceIn3D.h b/sdk/actions/image/showin3d/ShowAxialSliceIn3D.h
index 168d824..45c01ec 100644
--- a/sdk/actions/image/showin3d/ShowAxialSliceIn3D.h
+++ b/sdk/actions/image/showin3d/ShowAxialSliceIn3D.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.cpp b/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.cpp
index 0afff92..8d247c7 100644
--- a/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.cpp
+++ b/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.h b/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.h
index 062630a..e68c15c 100644
--- a/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.h
+++ b/sdk/actions/image/showin3d/ShowCoronalSliceIn3D.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowImageIn3D.cpp b/sdk/actions/image/showin3d/ShowImageIn3D.cpp
index e0db459..2f5f271 100644
--- a/sdk/actions/image/showin3d/ShowImageIn3D.cpp
+++ b/sdk/actions/image/showin3d/ShowImageIn3D.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowImageIn3D.h b/sdk/actions/image/showin3d/ShowImageIn3D.h
index 93eced4..373b7f8 100644
--- a/sdk/actions/image/showin3d/ShowImageIn3D.h
+++ b/sdk/actions/image/showin3d/ShowImageIn3D.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowIn3DExtension.cpp b/sdk/actions/image/showin3d/ShowIn3DExtension.cpp
index cdba2e9..4357458 100644
--- a/sdk/actions/image/showin3d/ShowIn3DExtension.cpp
+++ b/sdk/actions/image/showin3d/ShowIn3DExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,8 +31,6 @@
#include "ShowSagittalSliceIn3D.h"
#include "ShowArbitrarySliceIn3D.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(showin3d, ShowIn3DExtension)
// --------------- getActions -------------------
void ShowIn3DExtension::init() {
diff --git a/sdk/actions/image/showin3d/ShowIn3DExtension.h b/sdk/actions/image/showin3d/ShowIn3DExtension.h
index 6fa4ad1..c4bfc76 100644
--- a/sdk/actions/image/showin3d/ShowIn3DExtension.h
+++ b/sdk/actions/image/showin3d/ShowIn3DExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,13 +37,14 @@
class ShowIn3DExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.showin3D")
public:
/// Constructor
- ShowIn3DExtension() : camitk::ActionExtension() {};
+ ShowIn3DExtension() : camitk::ActionExtension() {}
/// Destructor
- virtual ~ShowIn3DExtension() {};
+ virtual ~ShowIn3DExtension() {}
/// Method returning the action extension name
virtual QString getName() {
diff --git a/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.cpp b/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.cpp
index d23df24..90aa5b0 100644
--- a/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.cpp
+++ b/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.h b/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.h
index 3221ed0..ca0b804 100644
--- a/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.h
+++ b/sdk/actions/image/showin3d/ShowSagittalSliceIn3D.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/CMakeLists.txt b/sdk/actions/image/volumerendering/CMakeLists.txt
index 5640e25..e9fd78e 100644
--- a/sdk/actions/image/volumerendering/CMakeLists.txt
+++ b/sdk/actions/image/volumerendering/CMakeLists.txt
@@ -4,7 +4,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Use ray tracing to produce a 3D reprensation of the image"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img brain.mha diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl structured.vtk testrgba.nrrd truthcube.pml
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/image/volumerendering/ColorPointWidget.cpp b/sdk/actions/image/volumerendering/ColorPointWidget.cpp
index ea83891..79950aa 100644
--- a/sdk/actions/image/volumerendering/ColorPointWidget.cpp
+++ b/sdk/actions/image/volumerendering/ColorPointWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/ColorPointWidget.h b/sdk/actions/image/volumerendering/ColorPointWidget.h
index dbef490..7ec5d0e 100644
--- a/sdk/actions/image/volumerendering/ColorPointWidget.h
+++ b/sdk/actions/image/volumerendering/ColorPointWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/GradientOpacityWidget.cpp b/sdk/actions/image/volumerendering/GradientOpacityWidget.cpp
index 7def89c..b287a30 100644
--- a/sdk/actions/image/volumerendering/GradientOpacityWidget.cpp
+++ b/sdk/actions/image/volumerendering/GradientOpacityWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/GradientOpacityWidget.h b/sdk/actions/image/volumerendering/GradientOpacityWidget.h
index 6b89cb1..782a22f 100644
--- a/sdk/actions/image/volumerendering/GradientOpacityWidget.h
+++ b/sdk/actions/image/volumerendering/GradientOpacityWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/TransparencyPointWidget.cpp b/sdk/actions/image/volumerendering/TransparencyPointWidget.cpp
index db76ff7..06a7ffb 100644
--- a/sdk/actions/image/volumerendering/TransparencyPointWidget.cpp
+++ b/sdk/actions/image/volumerendering/TransparencyPointWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/TransparencyPointWidget.h b/sdk/actions/image/volumerendering/TransparencyPointWidget.h
index a27f5e0..02ed8dc 100644
--- a/sdk/actions/image/volumerendering/TransparencyPointWidget.h
+++ b/sdk/actions/image/volumerendering/TransparencyPointWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingAction.cpp b/sdk/actions/image/volumerendering/VolumeRenderingAction.cpp
index d88dc50..17a802f 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingAction.cpp
+++ b/sdk/actions/image/volumerendering/VolumeRenderingAction.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -162,7 +162,7 @@ void VolumeRenderingAction::createVolumeRendering(ImageComponent * comp) {
// FILTER
// Cast element type of the image of type unigned short for mapper to work on the image
vtkSmartPointer<vtkImageCast> imageCast = vtkImageCast::New();
- imageCast->SetInput(comp->getImageData()); // reader->GetOutput());
+ imageCast->SetInputData(comp->getImageData()); // reader->GetOutput());
imageCast->SetOutputScalarTypeToUnsignedChar();
// Convert RGB images
@@ -172,7 +172,7 @@ void VolumeRenderingAction::createVolumeRendering(ImageComponent * comp) {
// MAPPER
vtkSmartPointer<vtkVolumeRayCastMapper> volumeMapper = vtkSmartPointer<vtkVolumeRayCastMapper>::New();
- volumeMapper->SetInput(magnitudeFilter->GetOutput());
+ volumeMapper->SetInputData(magnitudeFilter->GetOutput());
// The volume will be displayed by ray-cast alpha compositing.
// A ray-cast mapper is needed to do the ray-casting, and a
@@ -254,11 +254,11 @@ void VolumeRenderingAction::createVolumeRendering(ImageComponent * comp) {
// The vtkVolume is a vtkProp3D (like a vtkActor) and controls the position
// and orientation of the volume in world coordinates.
vtkSmartPointer<vtkVolume> volume = vtkSmartPointer<vtkVolume>::New();
+ volume->SetUserTransform(comp->getTransform());
volume->SetMapper(volumeMapper);
volume->SetProperty(volumeProperty);
volume->Update();
-
// Remove old volume from the component and the 3D viewer
vtkSmartPointer<vtkProp> oldVolume = comp->getVolumeRenderingChild()->getProp(volumeName);
@@ -274,8 +274,6 @@ void VolumeRenderingAction::createVolumeRendering(ImageComponent * comp) {
//InteractiveViewer::get3DViewer()->getRendererWidget()->addProp(volume);
comp->getVolumeRenderingChild()->setVisibility(InteractiveViewer::get3DViewer(), true);
InteractiveViewer::get3DViewer()->refresh();
-
-
}
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingAction.h b/sdk/actions/image/volumerendering/VolumeRenderingAction.h
index 75b25b0..2d32179 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingAction.h
+++ b/sdk/actions/image/volumerendering/VolumeRenderingAction.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingExtension.cpp b/sdk/actions/image/volumerendering/VolumeRenderingExtension.cpp
index 1ead8cf..5c1b697 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingExtension.cpp
+++ b/sdk/actions/image/volumerendering/VolumeRenderingExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,9 +26,6 @@
#include "VolumeRenderingExtension.h"
#include "VolumeRenderingAction.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(volumerenderingextension, VolumeRenderingExtension)
-
// --------------- getActions -------------------
void VolumeRenderingExtension::init() {
registerNewAction(VolumeRenderingAction);
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingExtension.h b/sdk/actions/image/volumerendering/VolumeRenderingExtension.h
index 35d9d7c..eef7e40 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingExtension.h
+++ b/sdk/actions/image/volumerendering/VolumeRenderingExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,13 +38,14 @@
class VolumeRenderingExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.volumerendering")
public:
/// the constructor
- VolumeRenderingExtension() : ActionExtension() {};
+ VolumeRenderingExtension() : ActionExtension() {}
/// the destructor
- virtual ~VolumeRenderingExtension() {};
+ virtual ~VolumeRenderingExtension() {}
/// Method that return the action extension name
virtual QString getName() {
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingWidget.cpp b/sdk/actions/image/volumerendering/VolumeRenderingWidget.cpp
index bd94592..5813a17 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingWidget.cpp
+++ b/sdk/actions/image/volumerendering/VolumeRenderingWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/image/volumerendering/VolumeRenderingWidget.h b/sdk/actions/image/volumerendering/VolumeRenderingWidget.h
index a72d806..b9c6b2a 100644
--- a/sdk/actions/image/volumerendering/VolumeRenderingWidget.h
+++ b/sdk/actions/image/volumerendering/VolumeRenderingWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/imageacquisition/CMakeLists.txt b/sdk/actions/imageacquisition/CMakeLists.txt
new file mode 100644
index 0000000..853a9d5
--- /dev/null
+++ b/sdk/actions/imageacquisition/CMakeLists.txt
@@ -0,0 +1,8 @@
+# Call CamiTK CMake Macro to define the action
+camitk_extension( ACTION_EXTENSION
+ DEFAULT
+ INSTALL_ALL_HEADERS
+ DESCRIPTION "Default actions for image acquisition components"
+ CEP_NAME SDK
+ )
+
diff --git a/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.cpp b/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.cpp
new file mode 100644
index 0000000..87d75bd
--- /dev/null
+++ b/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.cpp
@@ -0,0 +1,55 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#include "ImageAcquisitionActionExtension.h"
+
+// include generated actions headers
+#include "InitImagerAction.h"
+#include "StartImaging2DAction.h"
+#include "StopImaging2DAction.h"
+#include "StartImaging3DAction.h"
+#include "StopImaging3DAction.h"
+#include "SingleAcquisition2DAction.h"
+#include "SingleAcquisition3DAction.h"
+
+// --------------- getActions -------------------
+void ImageAcquisitionActionExtension::init() {
+ // Creating and registering the instance of InitImager
+ // Creating and registering the instance of StartImaging2D
+ // Creating and registering the instance of StopImaging2D
+ // Creating and registering the instance of StartImaging3D
+ // Creating and registering the instance of StopImaging3D
+ // Creating and registering the instance of SingleAcquisition2D
+ // Creating and registering the instance of SingleAcquisition3D
+ registerNewAction(InitImagerAction);
+ registerNewAction(StartImaging2DAction);
+ registerNewAction(StopImaging2DAction);
+ registerNewAction(StartImaging3DAction);
+ registerNewAction(StopImaging3DAction);
+ registerNewAction(SingleAcquisition2DAction);
+ registerNewAction(SingleAcquisition3DAction);
+}
+
diff --git a/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.h b/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.h
new file mode 100644
index 0000000..c8dddbf
--- /dev/null
+++ b/sdk/actions/imageacquisition/ImageAcquisitionActionExtension.h
@@ -0,0 +1,70 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef IMAGEACQUISITIONACTIONEXTENSION_H
+#define IMAGEACQUISITIONACTIONEXTENSION_H
+
+#include <ActionExtension.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Provides some generic actions to use the image acquisition component
+* which provides the necessary interface to connect to a generic acquisition
+* device
+*
+**/
+class ImageAcquisitionActionExtension : public camitk::ActionExtension {
+ Q_OBJECT
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.imageacquisition")
+
+public:
+ /// Constructor
+ ImageAcquisitionActionExtension() : ActionExtension() {}
+
+ /// Destructor
+ virtual ~ImageAcquisitionActionExtension() {}
+
+ /// Method returning the action extension name
+ virtual QString getName() {
+ return "ImageAcquisitionActionExtension";
+ };
+
+ /// Method returning the action extension descrption
+ virtual QString getDescription() {
+ return "Generic Actions container";
+ };
+
+ /// initialize all the actions
+ virtual void init();
+
+};
+
+#endif // IMAGEACQUISITIONACTIONEXTENSION_H
+
+
diff --git a/sdk/actions/imageacquisition/InitImagerAction.cpp b/sdk/actions/imageacquisition/InitImagerAction.cpp
new file mode 100644
index 0000000..e63bd30
--- /dev/null
+++ b/sdk/actions/imageacquisition/InitImagerAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "InitImagerAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+InitImagerAction::InitImagerAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("InitImagerAction");
+ setDescription("initialize the acquisition device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+InitImagerAction::~InitImagerAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus InitImagerAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void InitImagerAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->initImager();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/InitImagerAction.h b/sdk/actions/imageacquisition/InitImagerAction.h
new file mode 100644
index 0000000..151e1a5
--- /dev/null
+++ b/sdk/actions/imageacquisition/InitImagerAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef INITIMAGER_H
+#define INITIMAGER_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Initialize image acquisition
+*
+**/
+class InitImagerAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ InitImagerAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~InitImagerAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of InitImager (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // INITIMAGER_H
+
diff --git a/sdk/actions/imageacquisition/SingleAcquisition2DAction.cpp b/sdk/actions/imageacquisition/SingleAcquisition2DAction.cpp
new file mode 100644
index 0000000..982c2d8
--- /dev/null
+++ b/sdk/actions/imageacquisition/SingleAcquisition2DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "SingleAcquisition2DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+SingleAcquisition2DAction::SingleAcquisition2DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("singleAcquisition2D");
+ setDescription("acquire one 2D ImageComponent by the device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+SingleAcquisition2DAction::~SingleAcquisition2DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus SingleAcquisition2DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void SingleAcquisition2DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->singleAcquisition2D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/SingleAcquisition2DAction.h b/sdk/actions/imageacquisition/SingleAcquisition2DAction.h
new file mode 100644
index 0000000..6e8a82e
--- /dev/null
+++ b/sdk/actions/imageacquisition/SingleAcquisition2DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef SINGLEACQUISITION2D_H
+#define SINGLEACQUISITION2D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to perform a 2D acquisition process
+*
+**/
+class SingleAcquisition2DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ SingleAcquisition2DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~SingleAcquisition2DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of SingleAcquisition2D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // SINGLEACQUISITION2D_H
+
diff --git a/sdk/actions/imageacquisition/SingleAcquisition3DAction.cpp b/sdk/actions/imageacquisition/SingleAcquisition3DAction.cpp
new file mode 100644
index 0000000..05b94d7
--- /dev/null
+++ b/sdk/actions/imageacquisition/SingleAcquisition3DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "SingleAcquisition3DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+SingleAcquisition3DAction::SingleAcquisition3DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("singleAcquisition3D");
+ setDescription("acquire one 3D ImageComponent by the device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+SingleAcquisition3DAction::~SingleAcquisition3DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus SingleAcquisition3DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void SingleAcquisition3DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->singleAcquisition3D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/SingleAcquisition3DAction.h b/sdk/actions/imageacquisition/SingleAcquisition3DAction.h
new file mode 100644
index 0000000..1ef74e5
--- /dev/null
+++ b/sdk/actions/imageacquisition/SingleAcquisition3DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef SINGLEACQUISITION3D_H
+#define SINGLEACQUISITION3D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to perform a 3D acquisition process
+*
+**/
+class SingleAcquisition3DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ SingleAcquisition3DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~SingleAcquisition3DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of SingleAcquisition3D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // SINGLEACQUISITION3D_H
+
diff --git a/sdk/actions/imageacquisition/StartImaging2DAction.cpp b/sdk/actions/imageacquisition/StartImaging2DAction.cpp
new file mode 100644
index 0000000..9dedbe6
--- /dev/null
+++ b/sdk/actions/imageacquisition/StartImaging2DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "StartImaging2DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+StartImaging2DAction::StartImaging2DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("startImaging2D");
+ setDescription("start the 2D acquisition done with the device (i.e : running a acquisition in live mode...)");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+StartImaging2DAction::~StartImaging2DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus StartImaging2DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void StartImaging2DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->startImaging2D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/StartImaging2DAction.h b/sdk/actions/imageacquisition/StartImaging2DAction.h
new file mode 100644
index 0000000..00f789e
--- /dev/null
+++ b/sdk/actions/imageacquisition/StartImaging2DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef STARTIMAGING2D_H
+#define STARTIMAGING2D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to start a 2D acquisition process
+*
+**/
+class StartImaging2DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ StartImaging2DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~StartImaging2DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of StartImaging2D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // STARTIMAGING2D_H
+
diff --git a/sdk/actions/imageacquisition/StartImaging3DAction.cpp b/sdk/actions/imageacquisition/StartImaging3DAction.cpp
new file mode 100644
index 0000000..c35ee05
--- /dev/null
+++ b/sdk/actions/imageacquisition/StartImaging3DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "StartImaging3DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+StartImaging3DAction::StartImaging3DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("startImaging3D");
+ setDescription("start the 3D continuous acquisition performed by the device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+StartImaging3DAction::~StartImaging3DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus StartImaging3DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void StartImaging3DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->startImaging3D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/StartImaging3DAction.h b/sdk/actions/imageacquisition/StartImaging3DAction.h
new file mode 100644
index 0000000..b935ad9
--- /dev/null
+++ b/sdk/actions/imageacquisition/StartImaging3DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef STARTIMAGING3D_H
+#define STARTIMAGING3D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to start a 3D acquisition process
+*
+**/
+class StartImaging3DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ StartImaging3DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~StartImaging3DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of StartImaging3D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // STARTIMAGING3D_H
+
diff --git a/sdk/actions/imageacquisition/StopImaging2DAction.cpp b/sdk/actions/imageacquisition/StopImaging2DAction.cpp
new file mode 100644
index 0000000..053bc1d
--- /dev/null
+++ b/sdk/actions/imageacquisition/StopImaging2DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "StopImaging2DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+StopImaging2DAction::StopImaging2DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("stopImaging2D");
+ setDescription("stop the 2D continuous acquisition performed by the device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+StopImaging2DAction::~StopImaging2DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus StopImaging2DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void StopImaging2DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->stopImaging2D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/StopImaging2DAction.h b/sdk/actions/imageacquisition/StopImaging2DAction.h
new file mode 100644
index 0000000..c2f4e3f
--- /dev/null
+++ b/sdk/actions/imageacquisition/StopImaging2DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef STOPIMAGING2D_H
+#define STOPIMAGING2D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to stop a 2D acquisition process
+*
+**/
+class StopImaging2DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ StopImaging2DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~StopImaging2DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of StopImaging2D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // STOPIMAGING2D_H
+
diff --git a/sdk/actions/imageacquisition/StopImaging3DAction.cpp b/sdk/actions/imageacquisition/StopImaging3DAction.cpp
new file mode 100644
index 0000000..1d8a90c
--- /dev/null
+++ b/sdk/actions/imageacquisition/StopImaging3DAction.cpp
@@ -0,0 +1,85 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// CamiTK includes
+#include "StopImaging3DAction.h"
+#include <Property.h>
+#include <Application.h>
+
+// Qt includes
+#include <QString>
+#include <QMessageBox>
+#include <QTextStream>
+
+
+using namespace camitk;
+
+
+// --------------- Constructor -------------------
+StopImaging3DAction::StopImaging3DAction(ActionExtension * extension) : Action(extension) {
+ // Setting name, description and input component
+ setName("stopImaging3D");
+ setDescription("stop the 3D continuous acquisition performed by the device");
+ setComponent("ImageAcquisitionComponent");
+
+ // Setting classification family and tags
+ setFamily("Image Acquisition");
+ // Tags allow the user to search the actions trhough themes
+ // You can add tags here with the method addTag("tagName");
+
+ // Setting the action's parameters
+ // If you want to add parameters to your action, you can add them
+ // using properties
+ // addParameter(new Property(tr("Property name"), "Property value", tr("Property description"), "Property unit"));
+
+}
+
+// --------------- destructor -------------------
+StopImaging3DAction::~StopImaging3DAction() {
+ // Do not do anything yet.
+ // Delete stuff if you create stuff
+ // (except if you use smart pointers of course !!)
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus StopImaging3DAction::apply() {
+
+ foreach (Component *comp, getTargets()) {
+ ImageAcquisitionComponent * input = dynamic_cast<ImageAcquisitionComponent *> (comp);
+ process(input);
+ }
+
+ return SUCCESS;
+}
+
+void StopImaging3DAction::process(ImageAcquisitionComponent * comp) {
+
+ comp->stopImaging3D();
+
+ Application::refresh();
+
+}
+
+
diff --git a/sdk/actions/imageacquisition/StopImaging3DAction.h b/sdk/actions/imageacquisition/StopImaging3DAction.h
new file mode 100644
index 0000000..6cd4e1d
--- /dev/null
+++ b/sdk/actions/imageacquisition/StopImaging3DAction.h
@@ -0,0 +1,67 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+
+#ifndef STOPIMAGING3D_H
+#define STOPIMAGING3D_H
+
+#include <Action.h>
+
+#include <ImageAcquisitionComponent.h>
+
+/**
+* @ingroup group_sdk_actions_ImageAcquisition
+*
+* @brief
+* Generic action to stop a 3D acquisition process
+*
+**/
+class StopImaging3DAction : public camitk::Action {
+
+public:
+
+ /// Default Constructor
+ StopImaging3DAction(camitk::ActionExtension *);
+
+ /// Default Destructor
+ virtual ~StopImaging3DAction();
+
+public slots:
+ /** this method is automatically called when the action is triggered.
+ * Call getTargets() method to get the list of components to use.
+ * \note getTargets() is automatically filtered so that it only contains compatible components,
+ * i.e., instances of StopImaging3D (or a subclass).
+ */
+ virtual ApplyStatus apply();
+
+private:
+ /// helper method to simplify the target component processing
+ virtual void process(camitk::ImageAcquisitionComponent *);
+
+
+};
+
+#endif // STOPIMAGING3D_H
+
diff --git a/sdk/actions/mesh/basicmesh/BasicMeshExtension.cpp b/sdk/actions/mesh/basicmesh/BasicMeshExtension.cpp
index 5229442..2871ec8 100644
--- a/sdk/actions/mesh/basicmesh/BasicMeshExtension.cpp
+++ b/sdk/actions/mesh/basicmesh/BasicMeshExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,25 +31,26 @@
#include "CenterMesh.h"
#include "MeshQuality.h"
#include "MeshToImageStencil.h"
+#include "ComputeNormals.h"
+#include "ExtractSelection.h"
#include <Action.h>
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(basicmesh, BasicMeshExtension);
-
// --------------- constructor -------------------
BasicMeshExtension::BasicMeshExtension() : ActionExtension() {
// initialize the icon resources
- Q_INIT_RESOURCE(BasicMeshExtensionIcons);
+ Q_INIT_RESOURCE ( BasicMeshExtensionIcons );
}
// --------------- init -------------------
void BasicMeshExtension::init() {
- registerNewAction(ChangeColor);
- registerNewAction(RenderingOption);
- registerNewAction(RigidTransform);
- registerNewAction(MeshPicking);
- registerNewAction(CenterMesh);
- registerNewAction(MeshQuality);
- registerNewAction(MeshToImageStencil);
-}
\ No newline at end of file
+ registerNewAction ( ChangeColor );
+ registerNewAction ( RenderingOption );
+ registerNewAction ( RigidTransform );
+ registerNewAction ( MeshPicking );
+ registerNewAction ( CenterMesh );
+ registerNewAction ( MeshQuality );
+ registerNewAction ( MeshToImageStencil );
+ registerNewAction ( ComputeNormals );
+ registerNewAction ( ExtractSelection );
+}
diff --git a/sdk/actions/mesh/basicmesh/BasicMeshExtension.h b/sdk/actions/mesh/basicmesh/BasicMeshExtension.h
index 2c30cd8..6c1bbf9 100644
--- a/sdk/actions/mesh/basicmesh/BasicMeshExtension.h
+++ b/sdk/actions/mesh/basicmesh/BasicMeshExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,14 +38,15 @@
*/
class BasicMeshExtension : public camitk::ActionExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ActionExtension);
+ Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.basicmesh")
public:
/// the constructor (needed to initialize the icon resources)
BasicMeshExtension();
/// the destructor
- virtual ~BasicMeshExtension() {};
+ virtual ~BasicMeshExtension() {}
/// initialize all the actions
virtual void init();
@@ -62,4 +63,4 @@ public:
};
-#endif // BASIC_MESH_EXTENSION_H
\ No newline at end of file
+#endif // BASIC_MESH_EXTENSION_H
diff --git a/sdk/actions/mesh/basicmesh/CMakeLists.txt b/sdk/actions/mesh/basicmesh/CMakeLists.txt
index 3f4d8bd..2121efb 100644
--- a/sdk/actions/mesh/basicmesh/CMakeLists.txt
+++ b/sdk/actions/mesh/basicmesh/CMakeLists.txt
@@ -3,7 +3,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Provides basic actions on meshes"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm
+ TEST_FILES BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd ramp1.gipl robot.wrl structured.vtk testrgba.nrrd truthcube.pml
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/mesh/basicmesh/CenterMesh.cpp b/sdk/actions/mesh/basicmesh/CenterMesh.cpp
index 41d6c17..8d34752 100644
--- a/sdk/actions/mesh/basicmesh/CenterMesh.cpp
+++ b/sdk/actions/mesh/basicmesh/CenterMesh.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/CenterMesh.h b/sdk/actions/mesh/basicmesh/CenterMesh.h
index 199b21e..6fef464 100644
--- a/sdk/actions/mesh/basicmesh/CenterMesh.h
+++ b/sdk/actions/mesh/basicmesh/CenterMesh.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/ChangeColor.cpp b/sdk/actions/mesh/basicmesh/ChangeColor.cpp
index cbe0c9a..f6757e8 100644
--- a/sdk/actions/mesh/basicmesh/ChangeColor.cpp
+++ b/sdk/actions/mesh/basicmesh/ChangeColor.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/ChangeColor.h b/sdk/actions/mesh/basicmesh/ChangeColor.h
index 63a0751..db606a2 100644
--- a/sdk/actions/mesh/basicmesh/ChangeColor.h
+++ b/sdk/actions/mesh/basicmesh/ChangeColor.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/ComputeNormals.cpp b/sdk/actions/mesh/basicmesh/ComputeNormals.cpp
new file mode 100644
index 0000000..fbeb2dc
--- /dev/null
+++ b/sdk/actions/mesh/basicmesh/ComputeNormals.cpp
@@ -0,0 +1,73 @@
+// CamiTK includes
+#include "ComputeNormals.h"
+#include <Application.h>
+#include <MeshComponent.h>
+#include <Log.h>
+#include <Property.h>
+
+// Vtk includes
+#include <vtkPolyDataNormals.h>
+#include <vtkCallbackCommand.h>
+#include <vtkDataSetAttributes.h>
+#include <vtkPointData.h>
+#include <vtkCellData.h>
+
+using namespace camitk;
+
+ComputeNormals::ComputeNormals ( camitk::ActionExtension* ext ) : Action ( ext ) {
+ this->setName ( "Compute Normals" );
+ this->setDescription ( QString ( tr ( "Compute normals of surface mesh." ) ) );
+ this->setComponent ( "MeshComponent" );
+ this->setFamily ( "Basic Mesh" );
+ this->addTag ( tr ( "normal" ) );
+ this->addTag ( tr ( "surface" ) );
+}
+
+ComputeNormals::~ComputeNormals() {
+
+}
+
+Action::ApplyStatus ComputeNormals::apply() {
+ // set waiting cursor and status bar
+ QApplication::setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
+ Application::showStatusBarMessage ( tr ( "Compute Curvatures..." ) );
+ Application::resetProgressBar();
+ vtkSmartPointer<vtkCallbackCommand> progressCallback = vtkSmartPointer<vtkCallbackCommand>::New();
+ progressCallback->SetCallback ( &Application::vtkProgressFunction );
+
+ // target must be a polydata
+ MeshComponent *mesh = dynamic_cast<MeshComponent*> ( getTargets().first() );
+
+ if ( !mesh ) {
+ CAMITK_DEBUG ( "ComputeNormals", "apply", "mesh " +
+ getTargets().first()->getName().toStdString() + " is not a MeshComponent" )
+ return ABORTED;
+ }
+
+ vtkPolyData* pData = vtkPolyData::SafeDownCast ( mesh->getPointSet() );
+ pData->AddObserver ( vtkCommand::ProgressEvent, progressCallback );
+
+ if ( !pData ) {
+ CAMITK_DEBUG ( "ComputeNormals", "apply", "the mesh point set of " +
+ getTargets().first()->getName().toStdString() + " is not a polydata" )
+ return ABORTED;
+ }
+
+ CAMITK_INFO ( "ComputeNormals", "apply", "Compute normals for mesh " +
+ getTargets().first()->getName().toStdString() )
+
+ // compute normals
+ vtkSmartPointer<vtkPolyDataNormals> polyNormals = vtkSmartPointer<vtkPolyDataNormals>::New();
+ polyNormals->SetInputData ( pData );
+ polyNormals->AddObserver ( vtkCommand::ProgressEvent, progressCallback );
+ polyNormals->Update();
+
+ mesh->addPointData ( "Normals", polyNormals->GetOutput()->GetPointData()->GetScalars ( "Normals" ) );
+
+ // refresh restore the normal cursor and progress bar
+ Application::refresh();
+ Application::resetProgressBar();
+ Application::showStatusBarMessage ( "" );
+ QApplication::restoreOverrideCursor();
+ return SUCCESS;
+}
diff --git a/sdk/actions/mesh/basicmesh/ComputeNormals.h b/sdk/actions/mesh/basicmesh/ComputeNormals.h
new file mode 100644
index 0000000..5f08737
--- /dev/null
+++ b/sdk/actions/mesh/basicmesh/ComputeNormals.h
@@ -0,0 +1,49 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef COMPUTE_CURVATURES_HPP
+#define COMPUTE_CURVATURES_HPP
+
+#include <Action.h>
+#include <vtkCurvatures.h>
+
+class ComputeNormals : public camitk::Action {
+
+ Q_OBJECT
+
+public :
+
+ ComputeNormals ( camitk::ActionExtension* ext );
+
+ virtual ~ComputeNormals();
+
+public slots :
+
+ /// method applied when the action is called
+ virtual ApplyStatus apply();
+
+};
+
+#endif // COMPUTE_CURVATURES_HPP
diff --git a/sdk/actions/mesh/basicmesh/ExtractSelection.cpp b/sdk/actions/mesh/basicmesh/ExtractSelection.cpp
new file mode 100644
index 0000000..38f5fe1
--- /dev/null
+++ b/sdk/actions/mesh/basicmesh/ExtractSelection.cpp
@@ -0,0 +1,87 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "ExtractSelection.h"
+
+#include <MeshComponent.h>
+#include <Log.h>
+#include <Application.h>
+
+#include <vtkExtractSelection.h>
+#include <vtkCallbackCommand.h>
+#include <vtkUnstructuredGrid.h>
+#include <vtkSelection.h>
+#include <vtkDataSet.h>
+
+using namespace camitk;
+
+// -------------------- ExtractSelection --------------------
+ExtractSelection::ExtractSelection(ActionExtension* extension) : Action(extension) {
+ this->setName("Extract Selection");
+ this->setDescription(tr("Extract the current selection"));
+ this->setComponent("MeshComponent");
+ this->setFamily("Basic Mesh");
+ this->addTag(tr("selection"));
+}
+
+// --------------- apply -------------------
+Action::ApplyStatus ExtractSelection::apply() {
+ // set waiting cursor and status bar
+ QApplication::setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
+ Application::showStatusBarMessage(tr("Extracting Surface..."));
+ Application::resetProgressBar();
+ vtkSmartPointer<vtkCallbackCommand> progressCallback = vtkSmartPointer<vtkCallbackCommand>::New();
+ progressCallback->SetCallback(&Application::vtkProgressFunction);
+
+ // use the last target
+ MeshComponent *targetMesh = dynamic_cast<MeshComponent*>(getTargets().last());
+
+ if ( !targetMesh ) {
+ CAMITK_DEBUG ( "ExtractSelection", "apply", "mesh " +
+ getTargets().first()->getName().toStdString() + " is not a MeshComponent" )
+ return ABORTED;
+ }
+
+ CAMITK_INFO("ExtractSelection", "apply", "Extract selection of " << getTargets().last()->getName().toStdString());
+
+ vtkSmartPointer<vtkExtractSelection> extractSelection = vtkSmartPointer<vtkExtractSelection>::New();
+
+ extractSelection->SetInputData(0, targetMesh->getPointSet());
+ extractSelection->SetInputData(1, targetMesh->getActiveSelection());
+ extractSelection->AddObserver(vtkCommand::ProgressEvent, progressCallback);
+ extractSelection->Update();
+ vtkSmartPointer<vtkUnstructuredGrid> grid = vtkUnstructuredGrid::SafeDownCast(extractSelection->GetOutput());
+
+ // create a new MeshComponent with the extracted selection
+ new MeshComponent(grid, targetMesh->getName() + " extracted");
+
+ // restore the normal cursor and progress bar
+ Application::refresh();
+ Application::resetProgressBar();
+ Application::showStatusBarMessage("");
+ QApplication::restoreOverrideCursor();
+
+ return SUCCESS;
+}
diff --git a/sdk/actions/mesh/basicmesh/ExtractSelection.h b/sdk/actions/mesh/basicmesh/ExtractSelection.h
new file mode 100644
index 0000000..f629e8f
--- /dev/null
+++ b/sdk/actions/mesh/basicmesh/ExtractSelection.h
@@ -0,0 +1,53 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef EXTRACT_SELECTION_H
+#define EXTRACT_SELECTION_H
+
+#include <Action.h>
+
+/**
+ * @brief Extract the current selection of a mesh.
+ */
+class ExtractSelection : public camitk::Action {
+
+ Q_OBJECT
+
+public:
+
+ /// the constructor
+ ExtractSelection(camitk::ActionExtension*);
+
+ /// the destructor
+ virtual ~ExtractSelection() {};
+
+public slots:
+
+ /// method applied when the action is called
+ virtual ApplyStatus apply();
+
+};
+
+#endif // EXTRACT_SELECTION_H
diff --git a/sdk/actions/mesh/basicmesh/MeshPicking.cpp b/sdk/actions/mesh/basicmesh/MeshPicking.cpp
index 9b8169e..5831b11 100644
--- a/sdk/actions/mesh/basicmesh/MeshPicking.cpp
+++ b/sdk/actions/mesh/basicmesh/MeshPicking.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -91,48 +91,52 @@ Action::ApplyStatus MeshPicking::apply() {
vtkIdType lastPickedCellId = meshComponent->getPickedCellId();
// the information message (in rich text, i.e., html)
- QString message = "<b>Selected Component:</b> " + meshComponent->getName() + "<br/>";
-
- // if the id is valid, get the corresponding information
- if (lastPickedPointId >= 0) {
- message += "<b>Point Id:</b> " + QString("%1").arg(lastPickedPointId, 6) + "<br/>";
- // get the position
- double *pointPosition = meshComponent->getPointSet()->GetPoint(lastPickedPointId);
- message += "<b>Point Position:</b> "+ QString("(%1,%2,%3)").arg(pointPosition[0], 6).arg(pointPosition[1], 6).arg(pointPosition[2], 6) + "<br/>";
- } else {
- message += "<b>No point picked</b><br/>";
- }
+ // Note: during test, the getWidget() method is not called, informationFrame is NULL
+ // => building the message should be bypassed
+ if (informationFrame) {
+ QString message = "<b>Selected Component:</b> " + meshComponent->getName() + "<br/>";
+
+ // if the id is valid, get the corresponding information
+ if (lastPickedPointId >= 0) {
+ message += "<b>Point Id:</b> " + QString("%1").arg(lastPickedPointId, 6) + "<br/>";
+ // get the position
+ double *pointPosition = meshComponent->getPointSet()->GetPoint(lastPickedPointId);
+ message += "<b>Point Position:</b> "+ QString("(%1,%2,%3)").arg(pointPosition[0], 6).arg(pointPosition[1], 6).arg(pointPosition[2], 6) + "<br/>";
+ } else {
+ message += "<b>No point picked</b><br/>";
+ }
- if (lastPickedCellId >= 0) {
- message += "<b>Cell Id:</b> " + QString("%1").arg(lastPickedCellId, 6) + "<br/>";
- vtkCell *pickedCell = meshComponent->getPointSet()->GetCell(lastPickedCellId);
- // for example here compute the barycenter of the cell
- double cellBarycenter[3] = {0.0, 0.0, 0.0};
+ if (lastPickedCellId >= 0) {
+ message += "<b>Cell Id:</b> " + QString("%1").arg(lastPickedCellId, 6) + "<br/>";
+ vtkCell *pickedCell = meshComponent->getPointSet()->GetCell(lastPickedCellId);
+ // for example here compute the barycenter of the cell
+ double cellBarycenter[3] = {0.0, 0.0, 0.0};
- // loop on all the cell points
- for (int i = 0; i < pickedCell->GetNumberOfPoints(); i++) {
- // for each point accumulate the position
- double *position = pickedCell->GetPoints()->GetPoint(i);
+ // loop on all the cell points
+ for (int i = 0; i < pickedCell->GetNumberOfPoints(); i++) {
+ // for each point accumulate the position
+ double *position = pickedCell->GetPoints()->GetPoint(i);
- for (unsigned int j = 0; j < 3; j++) {
- cellBarycenter[j] += position[j];
+ for (unsigned int j = 0; j < 3; j++) {
+ cellBarycenter[j] += position[j];
+ }
}
- }
- // divide by the number of accumulation
- for (unsigned int i = 0; i < 3; i++) {
- cellBarycenter[i] /= pickedCell->GetNumberOfPoints();
+ // divide by the number of accumulation
+ for (unsigned int i = 0; i < 3; i++) {
+ cellBarycenter[i] /= pickedCell->GetNumberOfPoints();
+ }
+
+ // add information
+ message += "<b>Barycenter:</b> " + QString("(%1,%2,%3)").arg(cellBarycenter[0], 6).arg(cellBarycenter[1], 6).arg(cellBarycenter[2], 6);
+ } else {
+ message += "<b>No cell picked</b>";
}
- // add information
- message += "<b>Barycenter:</b> " + QString("(%1,%2,%3)").arg(cellBarycenter[0], 6).arg(cellBarycenter[1], 6).arg(cellBarycenter[2], 6);
- } else {
- message += "<b>No cell picked</b>";
+ // update the information label
+ informationLabel->setText(message);
}
- // update the information label
- informationLabel->setText(message);
-
CAMITK_INFO("MeshPicking", "apply", "Done...");
// NOTE this CAMITK_INFO is here just to show how to use CamiTK log facilities
diff --git a/sdk/actions/mesh/basicmesh/MeshPicking.h b/sdk/actions/mesh/basicmesh/MeshPicking.h
index b0f040b..bbda5f0 100644
--- a/sdk/actions/mesh/basicmesh/MeshPicking.h
+++ b/sdk/actions/mesh/basicmesh/MeshPicking.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/MeshQuality.cpp b/sdk/actions/mesh/basicmesh/MeshQuality.cpp
index 193880b..fc0a47c 100644
--- a/sdk/actions/mesh/basicmesh/MeshQuality.cpp
+++ b/sdk/actions/mesh/basicmesh/MeshQuality.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -222,7 +222,6 @@ void MeshQuality::updateMeshColor(vtkSmartPointer< vtkDoubleArray > qualityArray
double scalar = getQualityColor(val,minAR,maxAR,minNR,maxNR);
cellData->InsertValue(indices[id],scalar);
}
- meshComponent->getPointSet()->Update();
meshComponent->getPointSet()->GetCellData()->SetScalars(cellData);
Application::refresh();
}
@@ -309,7 +308,7 @@ void MeshQuality::updateTableWidget(vtkSmartPointer< vtkDoubleArray > qualityArr
//-- keep lines below at the end to have a correct final layout
QHeaderView *horizontalHeader = qualityInfo->horizontalHeader();
- horizontalHeader->setResizeMode(QHeaderView::Stretch);
+ horizontalHeader->setSectionResizeMode(QHeaderView::Stretch);
QStringList headerTitles;
headerTitles << "Cell Id" << "Quality";
diff --git a/sdk/actions/mesh/basicmesh/MeshQuality.h b/sdk/actions/mesh/basicmesh/MeshQuality.h
index 0ac6327..ceadb37 100644
--- a/sdk/actions/mesh/basicmesh/MeshQuality.h
+++ b/sdk/actions/mesh/basicmesh/MeshQuality.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/MeshToImageStencil.cpp b/sdk/actions/mesh/basicmesh/MeshToImageStencil.cpp
index 25d07d0..84402c2 100644
--- a/sdk/actions/mesh/basicmesh/MeshToImageStencil.cpp
+++ b/sdk/actions/mesh/basicmesh/MeshToImageStencil.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -125,8 +125,7 @@ void MeshToImageStencil::process(MeshComponent * comp) {
ori[2] = origin.z();
colorImage->SetOrigin(ori);
- colorImage->SetScalarTypeToUnsignedChar();
- colorImage->AllocateScalars();
+ colorImage->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
// fill the image with foreground voxels:
//unsigned char inval = 255;
@@ -138,7 +137,7 @@ void MeshToImageStencil::process(MeshComponent * comp) {
// polygonal data --> image stencil:
vtkSmartPointer<vtkPolyDataToImageStencil> pol2stenc = vtkSmartPointer<vtkPolyDataToImageStencil>::New();
- pol2stenc->SetInput(pd);
+ pol2stenc->SetInputData(pd);
pol2stenc->SetOutputOrigin(ori);
pol2stenc->SetOutputSpacing(space);
@@ -147,25 +146,17 @@ void MeshToImageStencil::process(MeshComponent * comp) {
// cut the corresponding color image and set the background:
vtkSmartPointer<vtkImageStencil> imgstenc = vtkSmartPointer<vtkImageStencil>::New();
-#if VTK_MAJOR_VERSION <= 5
- imgstenc->SetInput(colorImage);
- imgstenc->SetStencil(pol2stenc->GetOutput());
-#else
- imgstenc->SetInputData(whiteImage);
+ imgstenc->SetInputData(colorImage);
imgstenc->SetStencilConnection(pol2stenc->GetOutputPort());
-#endif
+
imgstenc->ReverseStencilOff();
imgstenc->SetBackgroundValue(outval);
imgstenc->Update();
vtkSmartPointer<vtkMetaImageWriter> writer = vtkSmartPointer<vtkMetaImageWriter>::New();
- writer->SetFileName(file.toAscii());
-#if VTK_MAJOR_VERSION <= 5
- writer->SetInput(imgstenc->GetOutput());
-#else
+ writer->SetFileName(file.toLatin1());
writer->SetInputData(imgstenc->GetOutput());
-#endif
writer->Write();
}
diff --git a/sdk/actions/mesh/basicmesh/MeshToImageStencil.h b/sdk/actions/mesh/basicmesh/MeshToImageStencil.h
index 2598fdb..d501e8f 100644
--- a/sdk/actions/mesh/basicmesh/MeshToImageStencil.h
+++ b/sdk/actions/mesh/basicmesh/MeshToImageStencil.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/RenderingOption.cpp b/sdk/actions/mesh/basicmesh/RenderingOption.cpp
index f2eac59..28f8cbd 100644
--- a/sdk/actions/mesh/basicmesh/RenderingOption.cpp
+++ b/sdk/actions/mesh/basicmesh/RenderingOption.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -128,8 +128,8 @@ Action::ApplyStatus RenderingOption::apply() {
foreach(Component *comp, getTargets()) {
comp->setRenderingModes(m);
// set the additional prop visibility
- comp->getProp("glyph")->SetVisibility(property("Glyph represenation?").toBool());
- comp->getProp("label")->SetVisibility(property("Label represenation?").toBool());
+ comp->getProp("glyph")->SetVisibility(property("Glyph representation?").toBool());
+ comp->getProp("label")->SetVisibility(property("Label representation?").toBool());
// normal is a specific prop, create it only if needed
if (comp->getProp("normals") == NULL) {
@@ -137,7 +137,7 @@ Action::ApplyStatus RenderingOption::apply() {
//-- get the surface (in order to have polygon only)
vtkSmartPointer<vtkDataSetSurfaceFilter> surfaceFilter = vtkSmartPointer<vtkDataSetSurfaceFilter>::New();
- surfaceFilter->SetInput(comp->getPointSet());
+ surfaceFilter->SetInputData(comp->getPointSet());
surfaceFilter->Update();
//-- generate the normals
@@ -172,7 +172,7 @@ Action::ApplyStatus RenderingOption::apply() {
// else: nothing todo there is no normal to display anyway
} else {
// check weither to show the normals or no
- comp->getProp("normals")->SetVisibility(property("Normals represenation?").toBool());
+ comp->getProp("normals")->SetVisibility(property("Normals representation?").toBool());
}
diff --git a/sdk/actions/mesh/basicmesh/RenderingOption.h b/sdk/actions/mesh/basicmesh/RenderingOption.h
index 457677f..bd1f952 100644
--- a/sdk/actions/mesh/basicmesh/RenderingOption.h
+++ b/sdk/actions/mesh/basicmesh/RenderingOption.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/RigidTransform.cpp b/sdk/actions/mesh/basicmesh/RigidTransform.cpp
index 583a9ff..125f13e 100644
--- a/sdk/actions/mesh/basicmesh/RigidTransform.cpp
+++ b/sdk/actions/mesh/basicmesh/RigidTransform.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/RigidTransform.h b/sdk/actions/mesh/basicmesh/RigidTransform.h
index 97d3ff7..abba877 100644
--- a/sdk/actions/mesh/basicmesh/RigidTransform.h
+++ b/sdk/actions/mesh/basicmesh/RigidTransform.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basicmesh/resources/translate/translate_en.ts b/sdk/actions/mesh/basicmesh/resources/translate/translate_en.ts
index 0aab645..1e75508 100644
--- a/sdk/actions/mesh/basicmesh/resources/translate/translate_en.ts
+++ b/sdk/actions/mesh/basicmesh/resources/translate/translate_en.ts
@@ -15,6 +15,47 @@
</message>
</context>
<context>
+ <name>ComputeNormals</name>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="19"/>
+ <source>Compute normals of surface mesh.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="22"/>
+ <source>normal</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="23"/>
+ <source>surface</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="33"/>
+ <source>Compute Curvatures...</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>ExtractSelection</name>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="43"/>
+ <source>Extract the current selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="46"/>
+ <source>selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="53"/>
+ <source>Extracting Surface...</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
<name>MeshQuality</name>
<message>
<location filename="../../MeshQuality.cpp" line="140"/>
diff --git a/sdk/actions/mesh/basicmesh/resources/translate/translate_fr.ts b/sdk/actions/mesh/basicmesh/resources/translate/translate_fr.ts
index 9f9d6f2..cef3830 100644
--- a/sdk/actions/mesh/basicmesh/resources/translate/translate_fr.ts
+++ b/sdk/actions/mesh/basicmesh/resources/translate/translate_fr.ts
@@ -15,6 +15,47 @@
</message>
</context>
<context>
+ <name>ComputeNormals</name>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="19"/>
+ <source>Compute normals of surface mesh.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="22"/>
+ <source>normal</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="23"/>
+ <source>surface</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ComputeNormals.cpp" line="33"/>
+ <source>Compute Curvatures...</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>ExtractSelection</name>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="43"/>
+ <source>Extract the current selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="46"/>
+ <source>selection</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../ExtractSelection.cpp" line="53"/>
+ <source>Extracting Surface...</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
<name>MeshQuality</name>
<message>
<location filename="../../MeshQuality.cpp" line="140"/>
diff --git a/sdk/actions/mesh/basictopology/BasicTopologyExtension.cpp b/sdk/actions/mesh/basictopology/BasicTopologyExtension.cpp
index bad6215..6981a6d 100644
--- a/sdk/actions/mesh/basictopology/BasicTopologyExtension.cpp
+++ b/sdk/actions/mesh/basictopology/BasicTopologyExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,8 +26,6 @@
#include "GridTopology.h"
#include "SphereTopology.h"
-Q_EXPORT_PLUGIN2(BasicTopology, BasicTopologyExtension)
-
void BasicTopologyExtension::init() {
registerNewAction(GridTopology);
registerNewAction(SphereTopology);
diff --git a/sdk/actions/mesh/basictopology/BasicTopologyExtension.h b/sdk/actions/mesh/basictopology/BasicTopologyExtension.h
index 69a103f..4ab1d7f 100644
--- a/sdk/actions/mesh/basictopology/BasicTopologyExtension.h
+++ b/sdk/actions/mesh/basictopology/BasicTopologyExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,14 +40,15 @@ class BasicTopologyExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.basictopology")
public:
/// the constructor
- BasicTopologyExtension() : ActionExtension() {};
+ BasicTopologyExtension() : ActionExtension() {}
/// the destructor
- virtual ~BasicTopologyExtension() {};
+ virtual ~BasicTopologyExtension() {}
/// initialize all the actions
virtual void init();
@@ -64,4 +65,4 @@ public:
};
-#endif // BASIC_TOPOLOGY_EXTENSION_HPP_
\ No newline at end of file
+#endif // BASIC_TOPOLOGY_EXTENSION_HPP_
diff --git a/sdk/actions/mesh/basictopology/CMakeLists.txt b/sdk/actions/mesh/basictopology/CMakeLists.txt
index 9f66f62..8083c71 100644
--- a/sdk/actions/mesh/basictopology/CMakeLists.txt
+++ b/sdk/actions/mesh/basictopology/CMakeLists.txt
@@ -3,7 +3,7 @@ camitk_extension( ACTION_EXTENSION
CEP_NAME SDK
DESCRIPTION "Helps building simple 3D objects"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
- TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL
+ TEST_FILES bassin.msh BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic brain.mha cthead1.lsm diaphragm.pml head1.STL LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr liver-smooth.obj Mesh.off mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd mixed_3D_beam.msh ramp1.gipl robot.wrl scissors.obj simple.vtk sinus_skin.vtk sinus_skull.vtk skull1.stl [...]
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
diff --git a/sdk/actions/mesh/basictopology/GridTopology.cpp b/sdk/actions/mesh/basictopology/GridTopology.cpp
index 48094f5..702205a 100644
--- a/sdk/actions/mesh/basictopology/GridTopology.cpp
+++ b/sdk/actions/mesh/basictopology/GridTopology.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -109,11 +109,9 @@ Action::ApplyStatus GridTopology::apply() {
build1DGrid ( grid );
}
- grid->Update();
-
if ( property ( "Simplex" ).toBool()) {
vtkSmartPointer<vtkDataSetTriangleFilter> simplexFilter = vtkSmartPointer<vtkDataSetTriangleFilter>::New();
- simplexFilter->SetInput(grid);
+ simplexFilter->SetInputData(grid);
simplexFilter->Update();
grid = simplexFilter->GetOutput();
}
diff --git a/sdk/actions/mesh/basictopology/GridTopology.h b/sdk/actions/mesh/basictopology/GridTopology.h
index 3731e2d..1922a1a 100644
--- a/sdk/actions/mesh/basictopology/GridTopology.h
+++ b/sdk/actions/mesh/basictopology/GridTopology.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basictopology/SphereTopology.cpp b/sdk/actions/mesh/basictopology/SphereTopology.cpp
index c5f060a..a62f7a1 100644
--- a/sdk/actions/mesh/basictopology/SphereTopology.cpp
+++ b/sdk/actions/mesh/basictopology/SphereTopology.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/basictopology/SphereTopology.h b/sdk/actions/mesh/basictopology/SphereTopology.h
index d391462..d792d28 100644
--- a/sdk/actions/mesh/basictopology/SphereTopology.h
+++ b/sdk/actions/mesh/basictopology/SphereTopology.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/AppendMeshes.cpp b/sdk/actions/mesh/meshprocessing/AppendMeshes.cpp
new file mode 100644
index 0000000..e52d8e1
--- /dev/null
+++ b/sdk/actions/mesh/meshprocessing/AppendMeshes.cpp
@@ -0,0 +1,96 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+// CamiTK includes
+#include "AppendMeshes.h"
+#include <Application.h>
+#include <MeshComponent.h>
+#include <Log.h>
+#include <Property.h>
+
+// Vtk includes
+#include <vtkAppendFilter.h>
+#include <vtkUnstructuredGrid.h>
+#include <vtkTransformPolyDataFilter.h>
+#include <vtkLandmarkTransform.h>
+#include <vtkCallbackCommand.h>
+
+using namespace camitk;
+
+AppendMeshes::AppendMeshes ( camitk::ActionExtension* ext ) : Action ( ext ) {
+
+ this->setName ( "Append Meshes" );
+ this->setDescription ( QString ( tr ( "Append several meshes in one mesh." ) ) );
+ this->setComponent ( "MeshComponent" );
+ this->setFamily ( "Mesh Processing" );
+
+ Property* mergePointsProperty = new Property ( tr ( "Merge Points" ), true, tr ( "Define if close points are merged" ), "" );
+ addParameter ( mergePointsProperty );
+}
+
+AppendMeshes::~AppendMeshes() {
+}
+
+camitk::Action::ApplyStatus AppendMeshes::apply() {
+ // set waiting cursor and status bar
+ QApplication::setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
+ Application::showStatusBarMessage ( "Registration..." );
+ Application::resetProgressBar();
+ vtkSmartPointer<vtkCallbackCommand> progressCallback = vtkSmartPointer<vtkCallbackCommand>::New();
+ progressCallback->SetCallback ( &Application::vtkProgressFunction );
+
+ // at least 2 targets must be selected
+ if ( getTargets().size() < 2 ) {
+ CAMITK_DEBUG ( "AppendMeshes", "apply", "at least 2 mesh components must be selected" )
+ return ABORTED;
+ }
+
+ MeshComponent *meshComp;
+ vtkSmartPointer< vtkAppendFilter > appendFilter = vtkSmartPointer< vtkAppendFilter >::New();
+ appendFilter->SetMergePoints ( property ( "Merge Points" ).toInt() );
+
+ for ( int i = 0; i < getTargets().size(); i++ ) {
+ meshComp = dynamic_cast<MeshComponent*> ( getTargets().at ( i ) );
+ if ( !meshComp ) {
+ CAMITK_DEBUG ( "AppendMeshes", "apply", getTargets().at ( i )->getName().toStdString() + " is not a MeshComponent" );
+ return ABORTED;
+ }
+ appendFilter->AddInputData ( meshComp->getPointSet() );
+ }
+
+ CAMITK_INFO ( "AppendMeshes", "apply", "append meshes" );
+
+ appendFilter->AddObserver ( vtkCommand::ProgressEvent, progressCallback );
+ appendFilter->Modified();
+ appendFilter->Update();
+
+ new MeshComponent ( appendFilter->GetOutput() , "merged meshes" );
+
+ // refresh restore the normal cursor and progress bar
+ Application::refresh();
+ Application::resetProgressBar();
+ Application::showStatusBarMessage ( "" );
+ QApplication::restoreOverrideCursor();
+ return SUCCESS;
+}
diff --git a/sdk/actions/mesh/meshprocessing/AppendMeshes.h b/sdk/actions/mesh/meshprocessing/AppendMeshes.h
new file mode 100644
index 0000000..ab28285
--- /dev/null
+++ b/sdk/actions/mesh/meshprocessing/AppendMeshes.h
@@ -0,0 +1,60 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef APPEND_MESHES_H
+#define APPEND_MESHES_H
+
+#include <QObject>
+
+#include <Action.h>
+
+/**
+ * @ingroup group_sdk_actions_mesh_meshprocessing
+ *
+ * @brief
+ * Append several meshes in one mesh.
+ *
+ */
+class AppendMeshes : public camitk::Action {
+
+ Q_OBJECT
+
+public:
+
+ /// the constructor
+ AppendMeshes ( camitk::ActionExtension* ext );
+
+ /// the destructor
+ virtual ~AppendMeshes();
+
+
+public slots :
+
+ /// method applied when the action is called
+ virtual ApplyStatus apply();
+
+};
+
+#endif // APPEND_MESHES_H
diff --git a/sdk/actions/mesh/meshprocessing/CMakeLists.txt b/sdk/actions/mesh/meshprocessing/CMakeLists.txt
index 1fcb574..3ab277a 100644
--- a/sdk/actions/mesh/meshprocessing/CMakeLists.txt
+++ b/sdk/actions/mesh/meshprocessing/CMakeLists.txt
@@ -5,8 +5,20 @@ camitk_extension( ACTION_EXTENSION
DESCRIPTION "Features some nice algorithms for mesh processing"
TEST_APPLICATION ${APPLICATION_TEST_ACTION}
INCLUDE_DIRECTORIES ${CAMITK_INCLUDE_DIR}/components/vtkmesh
- TEST_FILES BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic cthead1.lsm brain.mha
+ INSTALL_ALL_HEADERS
+ TEST_FILES BigEndian.hdr BigEndian.img BigEndianCompressed1.hdr BigEndianCompressed1.img biorad.pic cthead1.lsm brain.mha LittleEndian1.hdr LittleEndian1.img LittleEndianCompressed1.hdr LittleEndianCompressed1.img LittleEndianZ1.hdr mini-complex-slow1.nrrd mini-ten-nomask-slow1.nrrd mini-vector-slow1.nrrd ramp1.gipl robot.wrl structured.vtk testrgba.nrrd truthcube.pml
)
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
-set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
+set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
+
+# "Append Meshes" action will always fail as only one mesh is given in input by testaction
+# "Append Meshes" needs two meshes (appends first mesh to second mesh)
+# The following lines will inverse the result of the test, and therefor transform
+# a fail to a pass
+# This is needed until there is a way to tell testaction that this action
+# needs two mesh in input
+if(NOT PACKAGING_NSIS)
+ set_tests_properties("action-meshprocessing-LEVEL1-19" PROPERTIES WILL_FAIL true)
+ set_tests_properties("action-meshprocessing-LEVEL1-21" PROPERTIES WILL_FAIL true)
+endif()
\ No newline at end of file
diff --git a/sdk/actions/mesh/meshprocessing/CleanPolyData.cpp b/sdk/actions/mesh/meshprocessing/CleanPolyData.cpp
index 6f0d756..907114b 100644
--- a/sdk/actions/mesh/meshprocessing/CleanPolyData.cpp
+++ b/sdk/actions/mesh/meshprocessing/CleanPolyData.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -74,7 +74,7 @@ Action::ApplyStatus CleanPolyData::apply() {
//-- clean the polydata
// remove redundant points
vtkSmartPointer<vtkCleanPolyData> cleaner = vtkSmartPointer<vtkCleanPolyData>::New();
- cleaner->AddInput ( targetPolyData );
+ cleaner->AddInputData ( targetPolyData );
cleaner->PointMergingOn();
cleaner->SetTolerance ( property("Tolerance").toDouble() *0.01 ); // % of the Bounding Box
cleaner->ConvertLinesToPointsOn ();
diff --git a/sdk/actions/mesh/meshprocessing/CleanPolyData.h b/sdk/actions/mesh/meshprocessing/CleanPolyData.h
index 4c265c4..75246dd 100644
--- a/sdk/actions/mesh/meshprocessing/CleanPolyData.h
+++ b/sdk/actions/mesh/meshprocessing/CleanPolyData.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ComputeCurvatures.cpp b/sdk/actions/mesh/meshprocessing/ComputeCurvatures.cpp
index 22a03a6..03a92b6 100644
--- a/sdk/actions/mesh/meshprocessing/ComputeCurvatures.cpp
+++ b/sdk/actions/mesh/meshprocessing/ComputeCurvatures.cpp
@@ -49,8 +49,6 @@ Action::ApplyStatus ComputeCurvatures::apply() {
}
vtkPolyData* pData = vtkPolyData::SafeDownCast(mesh->getPointSet());
- pData->AddObserver(vtkCommand::ProgressEvent, progressCallback);
- pData->Update();
if (!pData) {
CAMITK_DEBUG ( "ComputeCurvatures", "apply", "the mesh point set of " +
@@ -64,22 +62,22 @@ Action::ApplyStatus ComputeCurvatures::apply() {
// set up curvatures
vtkSmartPointer<vtkCurvatures> curv = vtkSmartPointer<vtkCurvatures>::New();
curv->SetCurvatureType ( property("Curvature type").toInt() );
- curv->SetInput(pData);
+ curv->SetInputData(pData);
curv->AddObserver(vtkCommand::ProgressEvent, progressCallback);
curv->Update();
switch(property("Curvature type").toInt()) {
case MINIMUM :
- mesh->addPointData("Minimum Curvature", vtkDataSetAttributes::SCALARS, curv->GetOutput()->GetPointData()->GetScalars("Minimum_Curvature"));
+ mesh->addPointData("Minimum Curvature", curv->GetOutput()->GetPointData()->GetScalars("Minimum_Curvature"));
break;
case MAXIMUM :
- mesh->addPointData("Maximum Curvature", vtkDataSetAttributes::SCALARS, curv->GetOutput()->GetPointData()->GetScalars("Maximum_Curvature"));
+ mesh->addPointData("Maximum Curvature", curv->GetOutput()->GetPointData()->GetScalars("Maximum_Curvature"));
break;
case GAUSSIAN :
- mesh->addPointData("Gauss Curvature", vtkDataSetAttributes::SCALARS, curv->GetOutput()->GetPointData()->GetScalars("Gauss_Curvature"));
+ mesh->addPointData("Gauss Curvature", curv->GetOutput()->GetPointData()->GetScalars("Gauss_Curvature"));
break;
case MEAN:
- mesh->addPointData("Mean Curvature", vtkDataSetAttributes::SCALARS, curv->GetOutput()->GetPointData()->GetScalars("Mean_Curvature"));
+ mesh->addPointData("Mean Curvature", curv->GetOutput()->GetPointData()->GetScalars("Mean_Curvature"));
break;
default :
return ABORTED;
diff --git a/sdk/actions/mesh/meshprocessing/ComputeCurvatures.h b/sdk/actions/mesh/meshprocessing/ComputeCurvatures.h
index d92f7e3..99f88d0 100644
--- a/sdk/actions/mesh/meshprocessing/ComputeCurvatures.h
+++ b/sdk/actions/mesh/meshprocessing/ComputeCurvatures.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/Decimation.cpp b/sdk/actions/mesh/meshprocessing/Decimation.cpp
index a969dd3..9aba03d 100644
--- a/sdk/actions/mesh/meshprocessing/Decimation.cpp
+++ b/sdk/actions/mesh/meshprocessing/Decimation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -44,7 +44,7 @@ Decimation::Decimation(ActionExtension *extension) : Action(extension) {
<li>topology modification is allowed (i.e., the parameter <b>Preserve topology</b> is false); </li>\
<li>mesh splitting is enabled (i.e., the parameter <b>Splitting</b> is true); </li>\
<li>the algorithm is allowed to modify the boundaries of the mesh (i.e., the parameter <b>Boundary vertex deletion?</b> is true); </li>\
- <li>the maximum allowable error (i.e., the paramter <b>Maximum error</b>) is set to <i>1.0e+38f</i> (default value). </ul> \
+ <li>the maximum allowable error (i.e., the parameter <b>Maximum error</b>) is set to <i>1.0e+38f</i> (default value). </ul> \
Other important parameters to adjust are the <b>Feature angle</b> and <b>Split angle</b> parameters, since these can impact the quality of the final mesh."));
setComponent("MeshComponent");
@@ -116,7 +116,7 @@ Action::ApplyStatus Decimation::apply() {
vtkSmartPointer<vtkDecimatePro> mcDecimate = vtkSmartPointer<vtkDecimatePro>::New();
// get back action parameters
- mcDecimate->SetInput ( targetMesh->getPointSet() );
+ mcDecimate->SetInputData ( targetMesh->getPointSet() );
mcDecimate->SetTargetReduction ( property("Decimation percentage").toDouble()/100.0 );
mcDecimate->SetPreserveTopology ( property("Preserve topology?").toBool() );
mcDecimate->SetMaximumError ( property("Maximum error").toDouble() );
@@ -134,7 +134,7 @@ Action::ApplyStatus Decimation::apply() {
// clean
vtkSmartPointer<vtkCleanPolyData> cleaner = vtkSmartPointer<vtkCleanPolyData>::New();
- cleaner->SetInput(mcDecimate->GetOutput());
+ cleaner->SetInputData(mcDecimate->GetOutput());
cleaner->AddObserver(vtkCommand::ProgressEvent, progressCallback);
cleaner->Update();
diff --git a/sdk/actions/mesh/meshprocessing/Decimation.h b/sdk/actions/mesh/meshprocessing/Decimation.h
index bc872ba..ef4e7a3 100644
--- a/sdk/actions/mesh/meshprocessing/Decimation.h
+++ b/sdk/actions/mesh/meshprocessing/Decimation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ExportAsMDL.cpp b/sdk/actions/mesh/meshprocessing/ExportAsMDL.cpp
index bcb0cdd..7c6689f 100644
--- a/sdk/actions/mesh/meshprocessing/ExportAsMDL.cpp
+++ b/sdk/actions/mesh/meshprocessing/ExportAsMDL.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ExportAsMDL.h b/sdk/actions/mesh/meshprocessing/ExportAsMDL.h
index 0f76557..3b55678 100644
--- a/sdk/actions/mesh/meshprocessing/ExportAsMDL.h
+++ b/sdk/actions/mesh/meshprocessing/ExportAsMDL.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ExtractEdges.cpp b/sdk/actions/mesh/meshprocessing/ExtractEdges.cpp
index 4a18451..58867e5 100644
--- a/sdk/actions/mesh/meshprocessing/ExtractEdges.cpp
+++ b/sdk/actions/mesh/meshprocessing/ExtractEdges.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -60,7 +60,7 @@ Action::ApplyStatus ExtractEdges::apply() {
MeshComponent *targetMesh = dynamic_cast<MeshComponent*>(getTargets().last());
vtkSmartPointer<vtkExtractEdges> extractEdgesFilter = vtkSmartPointer<vtkExtractEdges>::New();
- extractEdgesFilter->SetInput(targetMesh->getPointSet());
+ extractEdgesFilter->SetInputData(targetMesh->getPointSet());
extractEdgesFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
extractEdgesFilter->Update();
diff --git a/sdk/actions/mesh/meshprocessing/ExtractEdges.h b/sdk/actions/mesh/meshprocessing/ExtractEdges.h
index 70dda78..c9984a4 100644
--- a/sdk/actions/mesh/meshprocessing/ExtractEdges.h
+++ b/sdk/actions/mesh/meshprocessing/ExtractEdges.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ExtractSurface.cpp b/sdk/actions/mesh/meshprocessing/ExtractSurface.cpp
index a53370c..8ac7a01 100644
--- a/sdk/actions/mesh/meshprocessing/ExtractSurface.cpp
+++ b/sdk/actions/mesh/meshprocessing/ExtractSurface.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -61,7 +61,7 @@ Action::ApplyStatus ExtractSurface::apply() {
vtkSmartPointer<vtkGeometryFilter> geometryFilter = vtkSmartPointer<vtkGeometryFilter>::New();
vtkSmartPointer<vtkCleanPolyData> cleanFilter = vtkSmartPointer<vtkCleanPolyData>::New();
- geometryFilter->SetInput(targetMesh->getPointSet());
+ geometryFilter->SetInputData(targetMesh->getPointSet());
cleanFilter->SetInputConnection(geometryFilter->GetOutputPort());
cleanFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
cleanFilter->Update();
diff --git a/sdk/actions/mesh/meshprocessing/ExtractSurface.h b/sdk/actions/mesh/meshprocessing/ExtractSurface.h
index 4bd572e..97f99ac 100644
--- a/sdk/actions/mesh/meshprocessing/ExtractSurface.h
+++ b/sdk/actions/mesh/meshprocessing/ExtractSurface.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/FillWithPoints.cpp b/sdk/actions/mesh/meshprocessing/FillWithPoints.cpp
index 038e11b..bf5dca3 100644
--- a/sdk/actions/mesh/meshprocessing/FillWithPoints.cpp
+++ b/sdk/actions/mesh/meshprocessing/FillWithPoints.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -123,8 +123,8 @@ Action::ApplyStatus FillWithPoints::apply() {
vtkSmartPointer<vtkPolyData> gridPoints = vtkSmartPointer<vtkPolyData>::New();
gridPoints->SetPoints ( points );
vtkSmartPointer<vtkSelectEnclosedPoints> select = vtkSmartPointer<vtkSelectEnclosedPoints>::New();
- select->SetInput ( gridPoints );
- select->SetSurface ( targetPolyData );
+ select->SetInputData ( gridPoints );
+ select->SetSurfaceData ( targetPolyData );
select->AddObserver(vtkCommand::ProgressEvent, progressCallback);
select->Update();
@@ -144,12 +144,11 @@ Action::ApplyStatus FillWithPoints::apply() {
vtkPointIndex[i] = i;
insidePoints->InsertNextCell(VTK_POLY_VERTEX, insidePointsPoints->GetNumberOfPoints(),vtkPointIndex);
insidePoints->AddObserver(vtkCommand::ProgressEvent, progressCallback);
- insidePoints->Update();
//-- Generates one structure with all the points (append targetPolyData and insidePoints)
vtkSmartPointer<vtkAppendPolyData> appender = vtkSmartPointer<vtkAppendPolyData>::New();
- appender->AddInput ( targetPolyData );
- appender->AddInput ( insidePoints );
+ appender->AddInputData ( targetPolyData );
+ appender->AddInputData ( insidePoints );
appender->AddObserver(vtkCommand::ProgressEvent, progressCallback);
appender->Update();
diff --git a/sdk/actions/mesh/meshprocessing/FillWithPoints.h b/sdk/actions/mesh/meshprocessing/FillWithPoints.h
index 7e76059..72c5844 100644
--- a/sdk/actions/mesh/meshprocessing/FillWithPoints.h
+++ b/sdk/actions/mesh/meshprocessing/FillWithPoints.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ICPRegistration.cpp b/sdk/actions/mesh/meshprocessing/ICPRegistration.cpp
index 721d53b..abb3a51 100644
--- a/sdk/actions/mesh/meshprocessing/ICPRegistration.cpp
+++ b/sdk/actions/mesh/meshprocessing/ICPRegistration.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/ICPRegistration.h b/sdk/actions/mesh/meshprocessing/ICPRegistration.h
index a4dee88..f029c69 100644
--- a/sdk/actions/mesh/meshprocessing/ICPRegistration.h
+++ b/sdk/actions/mesh/meshprocessing/ICPRegistration.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/InvertMesh.cpp b/sdk/actions/mesh/meshprocessing/InvertMesh.cpp
index dba404c..6c91634 100644
--- a/sdk/actions/mesh/meshprocessing/InvertMesh.cpp
+++ b/sdk/actions/mesh/meshprocessing/InvertMesh.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -75,7 +75,7 @@ void InvertMesh::process(MeshComponent * comp) {
vtkSmartPointer<vtkCallbackCommand> progressCallback = vtkSmartPointer<vtkCallbackCommand>::New();
progressCallback->SetCallback(&Application::vtkProgressFunction);
- polydataNormals->SetInput(poly);
+ polydataNormals->SetInputData(poly);
polydataNormals->SetFlipNormals(1);
polydataNormals->AddObserver(vtkCommand::ProgressEvent, progressCallback);
polydataNormals->Update();
diff --git a/sdk/actions/mesh/meshprocessing/InvertMesh.h b/sdk/actions/mesh/meshprocessing/InvertMesh.h
index 0baba60..dccd30b 100644
--- a/sdk/actions/mesh/meshprocessing/InvertMesh.h
+++ b/sdk/actions/mesh/meshprocessing/InvertMesh.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.cpp b/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.cpp
index 5b1dce7..5b24edf 100644
--- a/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.cpp
+++ b/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.h b/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.h
index 7dba6ab..98eece2 100644
--- a/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.h
+++ b/sdk/actions/mesh/meshprocessing/LoadTextureFromBMP.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/LoadTransformation.cpp b/sdk/actions/mesh/meshprocessing/LoadTransformation.cpp
index 4f4cfaf..827a4ef 100644
--- a/sdk/actions/mesh/meshprocessing/LoadTransformation.cpp
+++ b/sdk/actions/mesh/meshprocessing/LoadTransformation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/LoadTransformation.h b/sdk/actions/mesh/meshprocessing/LoadTransformation.h
index 46af053..c3d52a4 100644
--- a/sdk/actions/mesh/meshprocessing/LoadTransformation.h
+++ b/sdk/actions/mesh/meshprocessing/LoadTransformation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/MergeMeshs.cpp b/sdk/actions/mesh/meshprocessing/MergeMeshs.cpp
index 3ebb0ce..df84fdf 100644
--- a/sdk/actions/mesh/meshprocessing/MergeMeshs.cpp
+++ b/sdk/actions/mesh/meshprocessing/MergeMeshs.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/MergeMeshs.h b/sdk/actions/mesh/meshprocessing/MergeMeshs.h
index 870d9c3..0740380 100644
--- a/sdk/actions/mesh/meshprocessing/MergeMeshs.h
+++ b/sdk/actions/mesh/meshprocessing/MergeMeshs.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/MeshClipping.cpp b/sdk/actions/mesh/meshprocessing/MeshClipping.cpp
index 5097427..2577fa3 100755
--- a/sdk/actions/mesh/meshprocessing/MeshClipping.cpp
+++ b/sdk/actions/mesh/meshprocessing/MeshClipping.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -120,7 +120,7 @@ QWidget *MeshClipping::getWidget() {
// just update the box
updateBox(false);
- if(planeVisibility) {
+ if (planeVisibility) {
widget->planeWidget->EnabledOn();
} else {
widget->planeWidget->EnabledOff();
diff --git a/sdk/actions/mesh/meshprocessing/MeshClipping.h b/sdk/actions/mesh/meshprocessing/MeshClipping.h
index 0403a07..efd4f96 100755
--- a/sdk/actions/mesh/meshprocessing/MeshClipping.h
+++ b/sdk/actions/mesh/meshprocessing/MeshClipping.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.cpp b/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.cpp
index 1ecd266..069beba 100644
--- a/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.cpp
+++ b/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,30 +39,29 @@
#include "ExportAsMDL.h"
#include "LoadTextureFromBMP.h"
#include "SaveDisplacementFromTransformation.h"
+#include "AppendMeshes.h"
#include "Application.h"
-// --------------- declare the extension -------------------
-Q_EXPORT_PLUGIN2(processing, MeshProcessingExtension)
-
// -------------------- init --------------------
void MeshProcessingExtension::init() {
- registerNewAction(Decimation);
- registerNewAction(CleanPolyData);
- registerNewAction(FillWithPoints);
- registerNewAction(WarpOut);
- registerNewAction(ExtractSurface);
- registerNewAction(ICPRegistration);
- registerNewAction(InvertMesh);
- registerNewAction(SmoothFilter);
- registerNewAction(ExtractEdges);
- registerNewAction(MergeMeshs);
- registerNewAction(MeshClipping);
- registerNewAction(ComputeCurvatures);
- registerNewAction(LoadTransformation);
- registerNewAction(ExportAsMDL);
- registerNewAction(LoadTextureFromBMP);
- registerNewAction(SaveDisplacementFromTransformation);
+ registerNewAction ( Decimation );
+ registerNewAction ( CleanPolyData );
+ registerNewAction ( FillWithPoints );
+ registerNewAction ( WarpOut );
+ registerNewAction ( ExtractSurface );
+ registerNewAction ( ICPRegistration );
+ registerNewAction ( InvertMesh );
+ registerNewAction ( SmoothFilter );
+ registerNewAction ( ExtractEdges );
+ registerNewAction ( MergeMeshs );
+ registerNewAction ( MeshClipping );
+ registerNewAction ( ComputeCurvatures );
+ registerNewAction ( LoadTransformation );
+ registerNewAction ( ExportAsMDL );
+ registerNewAction ( LoadTextureFromBMP );
+ registerNewAction ( SaveDisplacementFromTransformation );
+ registerNewAction ( AppendMeshes );
}
diff --git a/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.h b/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.h
index c278cb2..82bc148 100644
--- a/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.h
+++ b/sdk/actions/mesh/meshprocessing/MeshProcessingExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,13 +40,14 @@
class MeshProcessingExtension : public camitk::ActionExtension {
Q_OBJECT
Q_INTERFACES(camitk::ActionExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.action.meshprocessing")
public:
/// the constructor
- MeshProcessingExtension() : ActionExtension() {};
+ MeshProcessingExtension() : ActionExtension() {}
/// the destructor
- virtual ~MeshProcessingExtension() {};
+ virtual ~MeshProcessingExtension() {}
/// initialize all the actions
virtual void init();
@@ -63,4 +64,4 @@ public:
};
-#endif // MESHPROCESSINGEXTENSION_H
\ No newline at end of file
+#endif // MESHPROCESSINGEXTENSION_H
diff --git a/sdk/actions/mesh/meshprocessing/PlaneWidget.cpp b/sdk/actions/mesh/meshprocessing/PlaneWidget.cpp
index fb971a4..01fa498 100755
--- a/sdk/actions/mesh/meshprocessing/PlaneWidget.cpp
+++ b/sdk/actions/mesh/meshprocessing/PlaneWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -50,18 +50,6 @@ PlaneWidget::~PlaneWidget() {
// --------------- Execute -------------------
void PlaneWidget::Execute(vtkObject *caller, long unsigned int , void *) {
-
- //-- Get the plane widget
- vtkSmartPointer <vtkImplicitPlaneWidget> planeWidget = reinterpret_cast<vtkImplicitPlaneWidget *>(caller);
-
- double normal_cour[3];
- planeWidget->GetNormal(normal_cour);
- double origin_cour[3];
- planeWidget->GetOrigin(origin_cour);
-
- InteractiveViewer *v = InteractiveViewer::get3DViewer();
-
- if(action != NULL)
+ if (action != NULL)
action->apply();
-
}
diff --git a/sdk/actions/mesh/meshprocessing/PlaneWidget.h b/sdk/actions/mesh/meshprocessing/PlaneWidget.h
index 2a71c7a..a1fb7be 100755
--- a/sdk/actions/mesh/meshprocessing/PlaneWidget.h
+++ b/sdk/actions/mesh/meshprocessing/PlaneWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,14 @@
#include <vtkImplicitPlaneWidget.h>
#include <vtkCommand.h>
-///This class implements a VTK implicit plane in the CamiTK application
+/** This class implements a VTK implicit plane in the CamiTK application.
+ * It uses the vtkImplicitPlaneWidget to display a 3D plane with handy interactors
+ * to modify the plane 3D position (orientation and displacement in a given bounding box)
+ *
+ * The plane widget is linked with an action.
+ * When the user displaces the plane in 3D, the linked action apply() method
+ * is automatically called.
+ */
class PlaneWidget : public vtkCommand {
public:
@@ -47,7 +54,7 @@ public:
/// the destructor
virtual ~PlaneWidget();
- /// The widget to see the real information => the high resolution region
+ /// The widget to see the real information
vtkSmartPointer<vtkImplicitPlaneWidget> planeWidget;
/** Allows one to get the current 3D widget configuration.
diff --git a/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.cpp b/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.cpp
index 635f7dc..80a9d81 100644
--- a/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.cpp
+++ b/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -125,7 +125,7 @@ void SaveDisplacementFromTransformation::process(MeshComponent * comp) {
// Actually transform the points of the VTK dataset
vtkSmartPointer<vtkTransformFilter> transformFilter = vtkSmartPointer<vtkTransformFilter>::New();
transformFilter->SetTransform ( transfo );
- transformFilter->SetInput ( ps );
+ transformFilter->SetInputData ( ps );
transformFilter->Update();
diff --git a/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.h b/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.h
index fbc3ea8..84b4abd 100644
--- a/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.h
+++ b/sdk/actions/mesh/meshprocessing/SaveDisplacementFromTransformation.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/SmoothFilter.cpp b/sdk/actions/mesh/meshprocessing/SmoothFilter.cpp
index b57f0a6..6f7ee64 100644
--- a/sdk/actions/mesh/meshprocessing/SmoothFilter.cpp
+++ b/sdk/actions/mesh/meshprocessing/SmoothFilter.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -122,7 +122,7 @@ void SmoothFilter::process(MeshComponent * comp) {
// create the filter and set the polydata
vtkSmartPointer<vtkSmoothPolyDataFilter> smoothFilter = vtkSmartPointer<vtkSmoothPolyDataFilter>::New();
- smoothFilter->SetInput(poly);
+ smoothFilter->SetInputData(poly);
// set the number of iterations
smoothFilter->SetNumberOfIterations(iteration);
// set the relaxation factor
diff --git a/sdk/actions/mesh/meshprocessing/SmoothFilter.h b/sdk/actions/mesh/meshprocessing/SmoothFilter.h
index 256bca1..6c15df5 100644
--- a/sdk/actions/mesh/meshprocessing/SmoothFilter.h
+++ b/sdk/actions/mesh/meshprocessing/SmoothFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/WarpOut.cpp b/sdk/actions/mesh/meshprocessing/WarpOut.cpp
index 3689579..9fe1c48 100644
--- a/sdk/actions/mesh/meshprocessing/WarpOut.cpp
+++ b/sdk/actions/mesh/meshprocessing/WarpOut.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -97,7 +97,6 @@ Action::ApplyStatus WarpOut::apply() {
resultPointSet->AddObserver(vtkCommand::ProgressEvent, progressCallback);
resultPointSet->DeepCopy(targetMesh->getPointSet());
- resultPointSet->Update();
//-- add the id as point data in order to match normal to the points
vtkSmartPointer<vtkIdTypeArray> pointId = vtkSmartPointer<vtkIdTypeArray>::New();
pointId->SetNumberOfComponents(1);
@@ -111,7 +110,7 @@ Action::ApplyStatus WarpOut::apply() {
//-- extract the surface
vtkSmartPointer<vtkDataSetSurfaceFilter> surfaceFilter = vtkSmartPointer<vtkDataSetSurfaceFilter>::New();
- surfaceFilter->SetInput(resultPointSet);
+ surfaceFilter->SetInputData(resultPointSet);
surfaceFilter->AddObserver(vtkCommand::ProgressEvent, progressCallback);
surfaceFilter->Update();
diff --git a/sdk/actions/mesh/meshprocessing/WarpOut.h b/sdk/actions/mesh/meshprocessing/WarpOut.h
index 2167fce..458fe3d 100644
--- a/sdk/actions/mesh/meshprocessing/WarpOut.h
+++ b/sdk/actions/mesh/meshprocessing/WarpOut.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/actions/mesh/meshprocessing/resources/translate/translate_en.ts b/sdk/actions/mesh/meshprocessing/resources/translate/translate_en.ts
index ebdf584..fdc8455 100644
--- a/sdk/actions/mesh/meshprocessing/resources/translate/translate_en.ts
+++ b/sdk/actions/mesh/meshprocessing/resources/translate/translate_en.ts
@@ -2,6 +2,24 @@
<!DOCTYPE TS>
<TS version="2.0" language="en_US">
<context>
+ <name>AppendMeshes</name>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="44"/>
+ <source>Append several meshes in one mesh.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="48"/>
+ <source>Merge Points</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="48"/>
+ <source>Define if close points are merged</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
<name>CleanPolyData</name>
<message>
<location filename="../../CleanPolyData.cpp" line="43"/>
@@ -71,7 +89,7 @@
<name>Decimation</name>
<message>
<location filename="../../Decimation.cpp" line="43"/>
- <source>This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex in the priority queue is proc [...]
+ <source>This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex in the priority queue is proc [...]
<translation type="unfinished"></translation>
</message>
<message>
diff --git a/sdk/actions/mesh/meshprocessing/resources/translate/translate_fr.ts b/sdk/actions/mesh/meshprocessing/resources/translate/translate_fr.ts
index a39147e..aba2c93 100644
--- a/sdk/actions/mesh/meshprocessing/resources/translate/translate_fr.ts
+++ b/sdk/actions/mesh/meshprocessing/resources/translate/translate_fr.ts
@@ -2,6 +2,24 @@
<!DOCTYPE TS>
<TS version="2.0" language="fr_FR">
<context>
+ <name>AppendMeshes</name>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="44"/>
+ <source>Append several meshes in one mesh.</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="48"/>
+ <source>Merge Points</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../AppendMeshes.cpp" line="48"/>
+ <source>Define if close points are merged</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
<name>CleanPolyData</name>
<message>
<location filename="../../CleanPolyData.cpp" line="43"/>
@@ -71,8 +89,8 @@
<name>Decimation</name>
<message>
<location filename="../../Decimation.cpp" line="43"/>
- <source>This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex in the priority queue is proc [...]
- <translation>(à traduire en Français) This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex [...]
+ <source>This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex in the priority queue is proc [...]
+ <translation type="unfinished"></translation>
</message>
<message>
<location filename="../../Decimation.cpp" line="52"/>
@@ -180,6 +198,10 @@
<translation>Effectuer la Décimation</translation>
</message>
<message>
+ <source>This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. Then, each vertex in the priority queue is proc [...]
+ <translation type="obsolete">(à traduire en Français) This action reduce the number of triangles in a triangle mesh, forming a good approximation to the original geometry. <br/><br /> The algorithm proceeds as follows. Each vertex in the mesh is classified and inserted into a priority queue. The priority is based on the error to delete the vertex and retriangulate the hole. Vertices that cannot be deleted or triangulated (at this point in the algorithm) are skipped. T [...]
+ </message>
+ <message>
<source>This is an ENGLISH text</source>
<translation type="obsolete">Ceci est un texte en Français</translation>
</message>
diff --git a/sdk/applications/actionstatemachine/ActionState.cpp b/sdk/applications/actionstatemachine/ActionState.cpp
index f8691bb..4c1ef8d 100644
--- a/sdk/applications/actionstatemachine/ActionState.cpp
+++ b/sdk/applications/actionstatemachine/ActionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionState.h b/sdk/applications/actionstatemachine/ActionState.h
index 81d7b2c..b663d20 100644
--- a/sdk/applications/actionstatemachine/ActionState.h
+++ b/sdk/applications/actionstatemachine/ActionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateMachine.cpp b/sdk/applications/actionstatemachine/ActionStateMachine.cpp
index 66bff7f..7af0377 100644
--- a/sdk/applications/actionstatemachine/ActionStateMachine.cpp
+++ b/sdk/applications/actionstatemachine/ActionStateMachine.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateMachine.h b/sdk/applications/actionstatemachine/ActionStateMachine.h
index f2ac792..bac309a 100644
--- a/sdk/applications/actionstatemachine/ActionStateMachine.h
+++ b/sdk/applications/actionstatemachine/ActionStateMachine.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateViewer.cpp b/sdk/applications/actionstatemachine/ActionStateViewer.cpp
index 8c382de..fabda7e 100644
--- a/sdk/applications/actionstatemachine/ActionStateViewer.cpp
+++ b/sdk/applications/actionstatemachine/ActionStateViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateViewer.h b/sdk/applications/actionstatemachine/ActionStateViewer.h
index e1bf4e4..a15592a 100644
--- a/sdk/applications/actionstatemachine/ActionStateViewer.h
+++ b/sdk/applications/actionstatemachine/ActionStateViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateWidget.cpp b/sdk/applications/actionstatemachine/ActionStateWidget.cpp
index 7e8282b..bed740d 100644
--- a/sdk/applications/actionstatemachine/ActionStateWidget.cpp
+++ b/sdk/applications/actionstatemachine/ActionStateWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionStateWidget.h b/sdk/applications/actionstatemachine/ActionStateWidget.h
index f46092e..614370e 100644
--- a/sdk/applications/actionstatemachine/ActionStateWidget.h
+++ b/sdk/applications/actionstatemachine/ActionStateWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionTransition.cpp b/sdk/applications/actionstatemachine/ActionTransition.cpp
index 0d6b475..6b88fd2 100644
--- a/sdk/applications/actionstatemachine/ActionTransition.cpp
+++ b/sdk/applications/actionstatemachine/ActionTransition.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/ActionTransition.h b/sdk/applications/actionstatemachine/ActionTransition.h
index 9ab5ef1..37b592d 100644
--- a/sdk/applications/actionstatemachine/ActionTransition.h
+++ b/sdk/applications/actionstatemachine/ActionTransition.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/SaveActionState.cpp b/sdk/applications/actionstatemachine/SaveActionState.cpp
index c946146..8465511 100644
--- a/sdk/applications/actionstatemachine/SaveActionState.cpp
+++ b/sdk/applications/actionstatemachine/SaveActionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/SaveActionState.h b/sdk/applications/actionstatemachine/SaveActionState.h
index 8fa11db..77fd061 100644
--- a/sdk/applications/actionstatemachine/SaveActionState.h
+++ b/sdk/applications/actionstatemachine/SaveActionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/main.cpp b/sdk/applications/actionstatemachine/main.cpp
index 0844871..18db4c7 100644
--- a/sdk/applications/actionstatemachine/main.cpp
+++ b/sdk/applications/actionstatemachine/main.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/actionstatemachine/resources/log2html.xsl b/sdk/applications/actionstatemachine/resources/log2html.xsl
index 359fcbf..6896471 100644
--- a/sdk/applications/actionstatemachine/resources/log2html.xsl
+++ b/sdk/applications/actionstatemachine/resources/log2html.xsl
@@ -10,7 +10,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/cepgenerator/main.cpp b/sdk/applications/cepgenerator/main.cpp
index 8c58753..11445fe 100644
--- a/sdk/applications/cepgenerator/main.cpp
+++ b/sdk/applications/cepgenerator/main.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -87,7 +87,9 @@ int main(int argc, char * argv[]) {
} else {
// now we can work!
// for the translation from argument to QString, see http://qt-project.org/doc/qt-4.8/qcoreapplication.html#accessing-command-line-arguments
- CepGenerator::generateCEP(QString::fromLocal8Bit(o.file().c_str()), QString::fromLocal8Bit(o.directory().c_str()));
+ CepGenerator* generator = new CepGenerator(QString::fromLocal8Bit(o.file().c_str()), QString::fromLocal8Bit(o.directory().c_str()));
+ generator->process();
+ delete generator;
}
}
}
diff --git a/sdk/applications/cepgenerator/testdata/actionsExamplesLicence.xml b/sdk/applications/cepgenerator/testdata/actionsExamplesLicence.xml
index aaf11b7..2f47773 100644
--- a/sdk/applications/cepgenerator/testdata/actionsExamplesLicence.xml
+++ b/sdk/applications/cepgenerator/testdata/actionsExamplesLicence.xml
@@ -10,7 +10,7 @@
<copyright><![CDATA[/*****************************************************************************
$USERDEF_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/sdk/applications/cepgenerator/testdata/exampleComponents.xml b/sdk/applications/cepgenerator/testdata/exampleComponents.xml
index 288874f..8ab0848 100644
--- a/sdk/applications/cepgenerator/testdata/exampleComponents.xml
+++ b/sdk/applications/cepgenerator/testdata/exampleComponents.xml
@@ -11,7 +11,7 @@
<copyright><![CDATA[/* ****************************************************************************
$USERDEF_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/sdk/applications/config/CamiTKVersionInformation.h.in b/sdk/applications/config/CamiTKVersionInformation.h.in
index 6f46cb7..365540e 100644
--- a/sdk/applications/config/CamiTKVersionInformation.h.in
+++ b/sdk/applications/config/CamiTKVersionInformation.h.in
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,18 +28,18 @@ bool compiledFromPackageSource() {
return @CAMITK_SOURCE_PACKAGE_VERSION@;
}
-/// if the SDK is compiled from the svn version, this function returns if more svn information are available
-bool hasMoreSvnInformation() {
- return @CAMITK_SVN_SUBVERSION_FOUND@;
+/// if the SDK is compiled from the git version, this function returns if more git information are available
+bool hasMoreGitInformation() {
+ return @CAMITK_GIT_FOUND@;
}
-/// if the SDK is compiled from the svn version, this function returns the svn revision
-std::string svnRevision() {
- return "@CAMITK_SVN_WC_REVISION@";
+/// if the SDK is compiled from the git version, this function returns the git complete hash
+std::string gitHash() {
+ return "@CAMITK_GIT_HASH@";
}
-/// if the SDK is compiled from the svn version, this function returns the date of the last modified SDK file (YYYY-MM-DD HH:MM:SS)
-std::string svnDate() {
- return "@CAMITK_SVN_DATE@";
+/// if the SDK is compiled from the git version, this function returns the last commit date
+std::string gitDate() {
+ return "@CAMITK_GIT_DATE@";
}
\ No newline at end of file
diff --git a/sdk/applications/config/CommandLineOptions.cli b/sdk/applications/config/CommandLineOptions.cli
index 936f18f..8ac8996 100644
--- a/sdk/applications/config/CommandLineOptions.cli
+++ b/sdk/applications/config/CommandLineOptions.cli
@@ -18,4 +18,5 @@ class options {
bool --shortVersion | -s {"Print CamiTK short version string"};
bool --completeVersion | -vv {"Print CamiTK complete version number (including patch number)"};
bool --timeStamp | -t {"Generate a time stamp that includes current system date and time"};
+ bool --bug-report-info | -b {"Generate a report bug template with the CamiTK diagnosis in it"};
};
\ No newline at end of file
diff --git a/sdk/applications/config/CommandLineOptions.cxx b/sdk/applications/config/CommandLineOptions.cxx
index 3381e36..8ac66b9 100644
--- a/sdk/applications/config/CommandLineOptions.cxx
+++ b/sdk/applications/config/CommandLineOptions.cxx
@@ -1,541 +1,553 @@
-// This code was generated by CLI, a command line interface
-// compiler for C++.
-//
-
-#include "CommandLineOptions.hxx"
-
-#include <map>
-#include <set>
-#include <string>
-#include <vector>
-#include <ostream>
-#include <sstream>
-
-namespace cli
-{
- // unknown_option
- //
- unknown_option::
- ~unknown_option () throw ()
- {
- }
-
- void unknown_option::
- print (std::ostream& os) const
- {
- os << "unknown option '" << option () << "'";
- }
-
- const char* unknown_option::
- what () const throw ()
- {
- return "unknown option";
- }
-
- // unknown_argument
- //
- unknown_argument::
- ~unknown_argument () throw ()
- {
- }
-
- void unknown_argument::
- print (std::ostream& os) const
- {
- os << "unknown argument '" << argument () << "'";
- }
-
- const char* unknown_argument::
- what () const throw ()
- {
- return "unknown argument";
- }
-
- // missing_value
- //
- missing_value::
- ~missing_value () throw ()
- {
- }
-
- void missing_value::
- print (std::ostream& os) const
- {
- os << "missing value for option '" << option () << "'";
- }
-
- const char* missing_value::
- what () const throw ()
- {
- return "missing option value";
- }
-
- // invalid_value
- //
- invalid_value::
- ~invalid_value () throw ()
- {
- }
-
- void invalid_value::
- print (std::ostream& os) const
- {
- os << "invalid value '" << value () << "' for option '"
- << option () << "'";
- }
-
- const char* invalid_value::
- what () const throw ()
- {
- return "invalid option value";
- }
-
- // eos_reached
- //
- void eos_reached::
- print (std::ostream& os) const
- {
- os << what ();
- }
-
- const char* eos_reached::
- what () const throw ()
- {
- return "end of argument stream reached";
- }
-
- // scanner
- //
- scanner::
- ~scanner ()
- {
- }
-
- // argv_scanner
- //
- bool argv_scanner::
- more ()
- {
- return i_ < argc_;
- }
-
- const char* argv_scanner::
- peek ()
- {
- if (i_ < argc_)
- return argv_[i_];
- else
- throw eos_reached ();
- }
-
- const char* argv_scanner::
- next ()
- {
- if (i_ < argc_)
- {
- const char* r (argv_[i_]);
-
- if (erase_)
- {
- for (int i (i_ + 1); i < argc_; ++i)
- argv_[i - 1] = argv_[i];
-
- --argc_;
- argv_[argc_] = 0;
- }
- else
- ++i_;
-
- return r;
- }
- else
- throw eos_reached ();
- }
-
- void argv_scanner::
- skip ()
- {
- if (i_ < argc_)
- ++i_;
- else
- throw eos_reached ();
- }
-
- template <typename X>
- struct parser
- {
- static void
- parse (X& x, scanner& s)
- {
- const char* o (s.next ());
-
- if (s.more ())
- {
- const char* v (s.next ());
- std::istringstream is (v);
- if (!(is >> x && is.eof ()))
- throw invalid_value (o, v);
- }
- else
- throw missing_value (o);
- }
- };
-
- template <>
- struct parser<bool>
- {
- static void
- parse (bool& x, scanner& s)
- {
- s.next ();
- x = true;
- }
- };
-
- template <>
- struct parser<std::string>
- {
- static void
- parse (std::string& x, scanner& s)
- {
- const char* o (s.next ());
-
- if (s.more ())
- x = s.next ();
- else
- throw missing_value (o);
- }
- };
-
- template <typename X>
- struct parser<std::vector<X> >
- {
- static void
- parse (std::vector<X>& c, scanner& s)
- {
- X x;
- parser<X>::parse (x, s);
- c.push_back (x);
- }
- };
-
- template <typename X>
- struct parser<std::set<X> >
- {
- static void
- parse (std::set<X>& c, scanner& s)
- {
- X x;
- parser<X>::parse (x, s);
- c.insert (x);
- }
- };
-
- template <typename K, typename V>
- struct parser<std::map<K, V> >
- {
- static void
- parse (std::map<K, V>& m, scanner& s)
- {
- const char* o (s.next ());
-
- if (s.more ())
- {
- std::string ov (s.next ());
- std::string::size_type p = ov.find ('=');
-
- if (p == std::string::npos)
- {
- K k = K ();
-
- if (!ov.empty ())
- {
- std::istringstream ks (ov);
-
- if (!(ks >> k && ks.eof ()))
- throw invalid_value (o, ov);
- }
-
- m[k] = V ();
- }
- else
- {
- K k = K ();
- V v = V ();
- std::string kstr (ov, 0, p);
- std::string vstr (ov, p + 1);
-
- if (!kstr.empty ())
- {
- std::istringstream ks (kstr);
-
- if (!(ks >> k && ks.eof ()))
- throw invalid_value (o, ov);
- }
-
- if (!vstr.empty ())
- {
- std::istringstream vs (vstr);
-
- if (!(vs >> v && vs.eof ()))
- throw invalid_value (o, ov);
- }
-
- m[k] = v;
- }
- }
- else
- throw missing_value (o);
- }
- };
-
- template <typename X, typename T, T X::*P>
- void
- thunk (X& x, scanner& s)
- {
- parser<T>::parse (x.*P, s);
- }
-}
-
-#include <map>
-#include <cstring>
-
-// options
-//
-
-options::
-options (int& argc,
- char** argv,
- bool erase,
- ::cli::unknown_mode opt,
- ::cli::unknown_mode arg)
-: help_ (),
- version_ (),
- config_ (),
- printPath_ (),
- camitkDir_ (),
- shortVersion_ (),
- completeVersion_ (),
- timeStamp_ ()
-{
- ::cli::argv_scanner s (argc, argv, erase);
- _parse (s, opt, arg);
-}
-
-options::
-options (int start,
- int& argc,
- char** argv,
- bool erase,
- ::cli::unknown_mode opt,
- ::cli::unknown_mode arg)
-: help_ (),
- version_ (),
- config_ (),
- printPath_ (),
- camitkDir_ (),
- shortVersion_ (),
- completeVersion_ (),
- timeStamp_ ()
-{
- ::cli::argv_scanner s (start, argc, argv, erase);
- _parse (s, opt, arg);
-}
-
-options::
-options (int& argc,
- char** argv,
- int& end,
- bool erase,
- ::cli::unknown_mode opt,
- ::cli::unknown_mode arg)
-: help_ (),
- version_ (),
- config_ (),
- printPath_ (),
- camitkDir_ (),
- shortVersion_ (),
- completeVersion_ (),
- timeStamp_ ()
-{
- ::cli::argv_scanner s (argc, argv, erase);
- _parse (s, opt, arg);
- end = s.end ();
-}
-
-options::
-options (int start,
- int& argc,
- char** argv,
- int& end,
- bool erase,
- ::cli::unknown_mode opt,
- ::cli::unknown_mode arg)
-: help_ (),
- version_ (),
- config_ (),
- printPath_ (),
- camitkDir_ (),
- shortVersion_ (),
- completeVersion_ (),
- timeStamp_ ()
-{
- ::cli::argv_scanner s (start, argc, argv, erase);
- _parse (s, opt, arg);
- end = s.end ();
-}
-
-options::
-options (::cli::scanner& s,
- ::cli::unknown_mode opt,
- ::cli::unknown_mode arg)
-: help_ (),
- version_ (),
- config_ (),
- printPath_ (),
- camitkDir_ (),
- shortVersion_ (),
- completeVersion_ (),
- timeStamp_ ()
-{
- _parse (s, opt, arg);
-}
-
-void options::
-print_usage (::std::ostream& os)
-{
- os << "--help|-h Print usage information and exit." << ::std::endl;
-
- os << "--version|-v Print CamiTK version message" << ::std::endl;
-
- os << "--config|-c Print all information for a complete CamiTK diagnosis and" << ::std::endl
- << " exit" << ::std::endl;
-
- os << "--printPath|-p Print CamiTK path on the standard output and exit" << ::std::endl;
-
- os << "--camitkDir|-d Print CAMITK_DIR (the installation directory) and exit" << ::std::endl;
-
- os << "--shortVersion|-s Print CamiTK short version string" << ::std::endl;
-
- os << "--completeVersion|-vv Print CamiTK complete version number (including patch" << ::std::endl
- << " number)" << ::std::endl;
-
- os << "--timeStamp|-t Generate a time stamp that includes current system date" << ::std::endl
- << " and time" << ::std::endl;
-}
-
-typedef
-std::map<std::string, void (*) (options&, ::cli::scanner&)>
-_cli_options_map;
-
-static _cli_options_map _cli_options_map_;
-
-struct _cli_options_map_init
-{
- _cli_options_map_init ()
- {
- _cli_options_map_["--help"] =
- &::cli::thunk< options, bool, &options::help_ >;
- _cli_options_map_["-h"] =
- &::cli::thunk< options, bool, &options::help_ >;
- _cli_options_map_["--version"] =
- &::cli::thunk< options, bool, &options::version_ >;
- _cli_options_map_["-v"] =
- &::cli::thunk< options, bool, &options::version_ >;
- _cli_options_map_["--config"] =
- &::cli::thunk< options, bool, &options::config_ >;
- _cli_options_map_["-c"] =
- &::cli::thunk< options, bool, &options::config_ >;
- _cli_options_map_["--printPath"] =
- &::cli::thunk< options, bool, &options::printPath_ >;
- _cli_options_map_["-p"] =
- &::cli::thunk< options, bool, &options::printPath_ >;
- _cli_options_map_["--camitkDir"] =
- &::cli::thunk< options, bool, &options::camitkDir_ >;
- _cli_options_map_["-d"] =
- &::cli::thunk< options, bool, &options::camitkDir_ >;
- _cli_options_map_["--shortVersion"] =
- &::cli::thunk< options, bool, &options::shortVersion_ >;
- _cli_options_map_["-s"] =
- &::cli::thunk< options, bool, &options::shortVersion_ >;
- _cli_options_map_["--completeVersion"] =
- &::cli::thunk< options, bool, &options::completeVersion_ >;
- _cli_options_map_["-vv"] =
- &::cli::thunk< options, bool, &options::completeVersion_ >;
- _cli_options_map_["--timeStamp"] =
- &::cli::thunk< options, bool, &options::timeStamp_ >;
- _cli_options_map_["-t"] =
- &::cli::thunk< options, bool, &options::timeStamp_ >;
- }
-} _cli_options_map_init_;
-
-void options::
-_parse (::cli::scanner& s,
- ::cli::unknown_mode opt_mode,
- ::cli::unknown_mode arg_mode)
-{
- bool opt = true;
-
- while (s.more ())
- {
- const char* o = s.peek ();
-
- if (std::strcmp (o, "--") == 0)
- {
- s.skip ();
- opt = false;
- continue;
- }
-
- _cli_options_map::const_iterator i (
- opt ? _cli_options_map_.find (o) : _cli_options_map_.end ());
-
- if (i != _cli_options_map_.end ())
- {
- (*(i->second)) (*this, s);
- }
- else if (opt && std::strncmp (o, "-", 1) == 0 && o[1] != '\0')
- {
- switch (opt_mode)
- {
- case ::cli::unknown_mode::skip:
- {
- s.skip ();
- continue;
- }
- case ::cli::unknown_mode::stop:
- {
- break;
- }
- case ::cli::unknown_mode::fail:
- {
- throw ::cli::unknown_option (o);
- }
- }
-
- break;
- }
- else
- {
- switch (arg_mode)
- {
- case ::cli::unknown_mode::skip:
- {
- s.skip ();
- continue;
- }
- case ::cli::unknown_mode::stop:
- {
- break;
- }
- case ::cli::unknown_mode::fail:
- {
- throw ::cli::unknown_argument (o);
- }
- }
-
- break;
- }
- }
-}
-
+// This code was generated by CLI, a command line interface
+// compiler for C++.
+//
+
+#include "CommandLineOptions.hxx"
+
+#include <map>
+#include <set>
+#include <string>
+#include <vector>
+#include <ostream>
+#include <sstream>
+
+namespace cli
+{
+ // unknown_option
+ //
+ unknown_option::
+ ~unknown_option () throw ()
+ {
+ }
+
+ void unknown_option::
+ print (std::ostream& os) const
+ {
+ os << "unknown option '" << option () << "'";
+ }
+
+ const char* unknown_option::
+ what () const throw ()
+ {
+ return "unknown option";
+ }
+
+ // unknown_argument
+ //
+ unknown_argument::
+ ~unknown_argument () throw ()
+ {
+ }
+
+ void unknown_argument::
+ print (std::ostream& os) const
+ {
+ os << "unknown argument '" << argument () << "'";
+ }
+
+ const char* unknown_argument::
+ what () const throw ()
+ {
+ return "unknown argument";
+ }
+
+ // missing_value
+ //
+ missing_value::
+ ~missing_value () throw ()
+ {
+ }
+
+ void missing_value::
+ print (std::ostream& os) const
+ {
+ os << "missing value for option '" << option () << "'";
+ }
+
+ const char* missing_value::
+ what () const throw ()
+ {
+ return "missing option value";
+ }
+
+ // invalid_value
+ //
+ invalid_value::
+ ~invalid_value () throw ()
+ {
+ }
+
+ void invalid_value::
+ print (std::ostream& os) const
+ {
+ os << "invalid value '" << value () << "' for option '"
+ << option () << "'";
+ }
+
+ const char* invalid_value::
+ what () const throw ()
+ {
+ return "invalid option value";
+ }
+
+ // eos_reached
+ //
+ void eos_reached::
+ print (std::ostream& os) const
+ {
+ os << what ();
+ }
+
+ const char* eos_reached::
+ what () const throw ()
+ {
+ return "end of argument stream reached";
+ }
+
+ // scanner
+ //
+ scanner::
+ ~scanner ()
+ {
+ }
+
+ // argv_scanner
+ //
+ bool argv_scanner::
+ more ()
+ {
+ return i_ < argc_;
+ }
+
+ const char* argv_scanner::
+ peek ()
+ {
+ if (i_ < argc_)
+ return argv_[i_];
+ else
+ throw eos_reached ();
+ }
+
+ const char* argv_scanner::
+ next ()
+ {
+ if (i_ < argc_)
+ {
+ const char* r (argv_[i_]);
+
+ if (erase_)
+ {
+ for (int i (i_ + 1); i < argc_; ++i)
+ argv_[i - 1] = argv_[i];
+
+ --argc_;
+ argv_[argc_] = 0;
+ }
+ else
+ ++i_;
+
+ return r;
+ }
+ else
+ throw eos_reached ();
+ }
+
+ void argv_scanner::
+ skip ()
+ {
+ if (i_ < argc_)
+ ++i_;
+ else
+ throw eos_reached ();
+ }
+
+ template <typename X>
+ struct parser
+ {
+ static void
+ parse (X& x, scanner& s)
+ {
+ const char* o (s.next ());
+
+ if (s.more ())
+ {
+ const char* v (s.next ());
+ std::istringstream is (v);
+ if (!(is >> x && is.eof ()))
+ throw invalid_value (o, v);
+ }
+ else
+ throw missing_value (o);
+ }
+ };
+
+ template <>
+ struct parser<bool>
+ {
+ static void
+ parse (bool& x, scanner& s)
+ {
+ s.next ();
+ x = true;
+ }
+ };
+
+ template <>
+ struct parser<std::string>
+ {
+ static void
+ parse (std::string& x, scanner& s)
+ {
+ const char* o (s.next ());
+
+ if (s.more ())
+ x = s.next ();
+ else
+ throw missing_value (o);
+ }
+ };
+
+ template <typename X>
+ struct parser<std::vector<X> >
+ {
+ static void
+ parse (std::vector<X>& c, scanner& s)
+ {
+ X x;
+ parser<X>::parse (x, s);
+ c.push_back (x);
+ }
+ };
+
+ template <typename X>
+ struct parser<std::set<X> >
+ {
+ static void
+ parse (std::set<X>& c, scanner& s)
+ {
+ X x;
+ parser<X>::parse (x, s);
+ c.insert (x);
+ }
+ };
+
+ template <typename K, typename V>
+ struct parser<std::map<K, V> >
+ {
+ static void
+ parse (std::map<K, V>& m, scanner& s)
+ {
+ const char* o (s.next ());
+
+ if (s.more ())
+ {
+ std::string ov (s.next ());
+ std::string::size_type p = ov.find ('=');
+
+ if (p == std::string::npos)
+ {
+ K k = K ();
+
+ if (!ov.empty ())
+ {
+ std::istringstream ks (ov);
+
+ if (!(ks >> k && ks.eof ()))
+ throw invalid_value (o, ov);
+ }
+
+ m[k] = V ();
+ }
+ else
+ {
+ K k = K ();
+ V v = V ();
+ std::string kstr (ov, 0, p);
+ std::string vstr (ov, p + 1);
+
+ if (!kstr.empty ())
+ {
+ std::istringstream ks (kstr);
+
+ if (!(ks >> k && ks.eof ()))
+ throw invalid_value (o, ov);
+ }
+
+ if (!vstr.empty ())
+ {
+ std::istringstream vs (vstr);
+
+ if (!(vs >> v && vs.eof ()))
+ throw invalid_value (o, ov);
+ }
+
+ m[k] = v;
+ }
+ }
+ else
+ throw missing_value (o);
+ }
+ };
+
+ template <typename X, typename T, T X::*P>
+ void
+ thunk (X& x, scanner& s)
+ {
+ parser<T>::parse (x.*P, s);
+ }
+}
+
+#include <map>
+#include <cstring>
+
+// options
+//
+
+options::
+options (int& argc,
+ char** argv,
+ bool erase,
+ ::cli::unknown_mode opt,
+ ::cli::unknown_mode arg)
+: help_ (),
+ version_ (),
+ config_ (),
+ printPath_ (),
+ camitkDir_ (),
+ shortVersion_ (),
+ completeVersion_ (),
+ timeStamp_ (),
+ bug_report_info_ ()
+{
+ ::cli::argv_scanner s (argc, argv, erase);
+ _parse (s, opt, arg);
+}
+
+options::
+options (int start,
+ int& argc,
+ char** argv,
+ bool erase,
+ ::cli::unknown_mode opt,
+ ::cli::unknown_mode arg)
+: help_ (),
+ version_ (),
+ config_ (),
+ printPath_ (),
+ camitkDir_ (),
+ shortVersion_ (),
+ completeVersion_ (),
+ timeStamp_ (),
+ bug_report_info_ ()
+{
+ ::cli::argv_scanner s (start, argc, argv, erase);
+ _parse (s, opt, arg);
+}
+
+options::
+options (int& argc,
+ char** argv,
+ int& end,
+ bool erase,
+ ::cli::unknown_mode opt,
+ ::cli::unknown_mode arg)
+: help_ (),
+ version_ (),
+ config_ (),
+ printPath_ (),
+ camitkDir_ (),
+ shortVersion_ (),
+ completeVersion_ (),
+ timeStamp_ (),
+ bug_report_info_ ()
+{
+ ::cli::argv_scanner s (argc, argv, erase);
+ _parse (s, opt, arg);
+ end = s.end ();
+}
+
+options::
+options (int start,
+ int& argc,
+ char** argv,
+ int& end,
+ bool erase,
+ ::cli::unknown_mode opt,
+ ::cli::unknown_mode arg)
+: help_ (),
+ version_ (),
+ config_ (),
+ printPath_ (),
+ camitkDir_ (),
+ shortVersion_ (),
+ completeVersion_ (),
+ timeStamp_ (),
+ bug_report_info_ ()
+{
+ ::cli::argv_scanner s (start, argc, argv, erase);
+ _parse (s, opt, arg);
+ end = s.end ();
+}
+
+options::
+options (::cli::scanner& s,
+ ::cli::unknown_mode opt,
+ ::cli::unknown_mode arg)
+: help_ (),
+ version_ (),
+ config_ (),
+ printPath_ (),
+ camitkDir_ (),
+ shortVersion_ (),
+ completeVersion_ (),
+ timeStamp_ (),
+ bug_report_info_ ()
+{
+ _parse (s, opt, arg);
+}
+
+void options::
+print_usage (::std::ostream& os)
+{
+ os << "--help|-h Print usage information and exit." << ::std::endl;
+
+ os << "--version|-v Print CamiTK version message" << ::std::endl;
+
+ os << "--config|-c Print all information for a complete CamiTK diagnosis and" << ::std::endl
+ << " exit" << ::std::endl;
+
+ os << "--printPath|-p Print CamiTK path on the standard output and exit" << ::std::endl;
+
+ os << "--camitkDir|-d Print CAMITK_DIR (the installation directory) and exit" << ::std::endl;
+
+ os << "--shortVersion|-s Print CamiTK short version string" << ::std::endl;
+
+ os << "--completeVersion|-vv Print CamiTK complete version number (including patch" << ::std::endl
+ << " number)" << ::std::endl;
+
+ os << "--timeStamp|-t Generate a time stamp that includes current system date" << ::std::endl
+ << " and time" << ::std::endl;
+
+ os << "--bug-report-info|-b Generate a report bug template with the CamiTK diagnosis" << ::std::endl
+ << " in it" << ::std::endl;
+}
+
+typedef
+std::map<std::string, void (*) (options&, ::cli::scanner&)>
+_cli_options_map;
+
+static _cli_options_map _cli_options_map_;
+
+struct _cli_options_map_init
+{
+ _cli_options_map_init ()
+ {
+ _cli_options_map_["--help"] =
+ &::cli::thunk< options, bool, &options::help_ >;
+ _cli_options_map_["-h"] =
+ &::cli::thunk< options, bool, &options::help_ >;
+ _cli_options_map_["--version"] =
+ &::cli::thunk< options, bool, &options::version_ >;
+ _cli_options_map_["-v"] =
+ &::cli::thunk< options, bool, &options::version_ >;
+ _cli_options_map_["--config"] =
+ &::cli::thunk< options, bool, &options::config_ >;
+ _cli_options_map_["-c"] =
+ &::cli::thunk< options, bool, &options::config_ >;
+ _cli_options_map_["--printPath"] =
+ &::cli::thunk< options, bool, &options::printPath_ >;
+ _cli_options_map_["-p"] =
+ &::cli::thunk< options, bool, &options::printPath_ >;
+ _cli_options_map_["--camitkDir"] =
+ &::cli::thunk< options, bool, &options::camitkDir_ >;
+ _cli_options_map_["-d"] =
+ &::cli::thunk< options, bool, &options::camitkDir_ >;
+ _cli_options_map_["--shortVersion"] =
+ &::cli::thunk< options, bool, &options::shortVersion_ >;
+ _cli_options_map_["-s"] =
+ &::cli::thunk< options, bool, &options::shortVersion_ >;
+ _cli_options_map_["--completeVersion"] =
+ &::cli::thunk< options, bool, &options::completeVersion_ >;
+ _cli_options_map_["-vv"] =
+ &::cli::thunk< options, bool, &options::completeVersion_ >;
+ _cli_options_map_["--timeStamp"] =
+ &::cli::thunk< options, bool, &options::timeStamp_ >;
+ _cli_options_map_["-t"] =
+ &::cli::thunk< options, bool, &options::timeStamp_ >;
+ _cli_options_map_["--bug-report-info"] =
+ &::cli::thunk< options, bool, &options::bug_report_info_ >;
+ _cli_options_map_["-b"] =
+ &::cli::thunk< options, bool, &options::bug_report_info_ >;
+ }
+} _cli_options_map_init_;
+
+void options::
+_parse (::cli::scanner& s,
+ ::cli::unknown_mode opt_mode,
+ ::cli::unknown_mode arg_mode)
+{
+ bool opt = true;
+
+ while (s.more ())
+ {
+ const char* o = s.peek ();
+
+ if (std::strcmp (o, "--") == 0)
+ {
+ s.skip ();
+ opt = false;
+ continue;
+ }
+
+ _cli_options_map::const_iterator i (
+ opt ? _cli_options_map_.find (o) : _cli_options_map_.end ());
+
+ if (i != _cli_options_map_.end ())
+ {
+ (*(i->second)) (*this, s);
+ }
+ else if (opt && std::strncmp (o, "-", 1) == 0 && o[1] != '\0')
+ {
+ switch (opt_mode)
+ {
+ case ::cli::unknown_mode::skip:
+ {
+ s.skip ();
+ continue;
+ }
+ case ::cli::unknown_mode::stop:
+ {
+ break;
+ }
+ case ::cli::unknown_mode::fail:
+ {
+ throw ::cli::unknown_option (o);
+ }
+ }
+
+ break;
+ }
+ else
+ {
+ switch (arg_mode)
+ {
+ case ::cli::unknown_mode::skip:
+ {
+ s.skip ();
+ continue;
+ }
+ case ::cli::unknown_mode::stop:
+ {
+ break;
+ }
+ case ::cli::unknown_mode::fail:
+ {
+ throw ::cli::unknown_argument (o);
+ }
+ }
+
+ break;
+ }
+ }
+}
+
diff --git a/sdk/applications/config/CommandLineOptions.hxx b/sdk/applications/config/CommandLineOptions.hxx
index 86fd8bb..ffdd566 100644
--- a/sdk/applications/config/CommandLineOptions.hxx
+++ b/sdk/applications/config/CommandLineOptions.hxx
@@ -1,284 +1,288 @@
-// This code was generated by CLI, a command line interface
-// compiler for C++.
-//
-
-#ifndef COMMAND_LINE_OPTIONS_HXX
-#define COMMAND_LINE_OPTIONS_HXX
-
-#include <iosfwd>
-#include <string>
-#include <exception>
-
-namespace cli
-{
- class unknown_mode
- {
- public:
- enum value
- {
- skip,
- stop,
- fail
- };
-
- unknown_mode (value v);
-
- operator value () const
- {
- return v_;
- }
-
- private:
- value v_;
- };
-
- // Exceptions.
- //
-
- class exception: public std::exception
- {
- public:
- virtual void
- print (std::ostream&) const = 0;
- };
-
- std::ostream&
- operator<< (std::ostream&, const exception&);
-
- class unknown_option: public exception
- {
- public:
- virtual
- ~unknown_option () throw ();
-
- unknown_option (const std::string& option);
-
- const std::string&
- option () const;
-
- virtual void
- print (std::ostream&) const;
-
- virtual const char*
- what () const throw ();
-
- private:
- std::string option_;
- };
-
- class unknown_argument: public exception
- {
- public:
- virtual
- ~unknown_argument () throw ();
-
- unknown_argument (const std::string& argument);
-
- const std::string&
- argument () const;
-
- virtual void
- print (std::ostream&) const;
-
- virtual const char*
- what () const throw ();
-
- private:
- std::string argument_;
- };
-
- class missing_value: public exception
- {
- public:
- virtual
- ~missing_value () throw ();
-
- missing_value (const std::string& option);
-
- const std::string&
- option () const;
-
- virtual void
- print (std::ostream&) const;
-
- virtual const char*
- what () const throw ();
-
- private:
- std::string option_;
- };
-
- class invalid_value: public exception
- {
- public:
- virtual
- ~invalid_value () throw ();
-
- invalid_value (const std::string& option,
- const std::string& value);
-
- const std::string&
- option () const;
-
- const std::string&
- value () const;
-
- virtual void
- print (std::ostream&) const;
-
- virtual const char*
- what () const throw ();
-
- private:
- std::string option_;
- std::string value_;
- };
-
- class eos_reached: public exception
- {
- public:
- virtual void
- print (std::ostream&) const;
-
- virtual const char*
- what () const throw ();
- };
-
- class scanner
- {
- public:
- virtual
- ~scanner ();
-
- virtual bool
- more () = 0;
-
- virtual const char*
- peek () = 0;
-
- virtual const char*
- next () = 0;
-
- virtual void
- skip () = 0;
- };
-
- class argv_scanner: public scanner
- {
- public:
- argv_scanner (int& argc, char** argv, bool erase = false);
- argv_scanner (int start, int& argc, char** argv, bool erase = false);
-
- int
- end () const;
-
- virtual bool
- more ();
-
- virtual const char*
- peek ();
-
- virtual const char*
- next ();
-
- virtual void
- skip ();
-
- private:
- int i_;
- int& argc_;
- char** argv_;
- bool erase_;
- };
-}
-
-#include <string>
-
-class options
-{
- public:
-
- options (int& argc,
- char** argv,
- bool erase = false,
- ::cli::unknown_mode option = ::cli::unknown_mode::fail,
- ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
-
- options (int start,
- int& argc,
- char** argv,
- bool erase = false,
- ::cli::unknown_mode option = ::cli::unknown_mode::fail,
- ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
-
- options (int& argc,
- char** argv,
- int& end,
- bool erase = false,
- ::cli::unknown_mode option = ::cli::unknown_mode::fail,
- ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
-
- options (int start,
- int& argc,
- char** argv,
- int& end,
- bool erase = false,
- ::cli::unknown_mode option = ::cli::unknown_mode::fail,
- ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
-
- options (::cli::scanner&,
- ::cli::unknown_mode option = ::cli::unknown_mode::fail,
- ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
-
- // Option accessors.
- //
-
- const bool&
- help () const;
-
- const bool&
- version () const;
-
- const bool&
- config () const;
-
- const bool&
- printPath () const;
-
- const bool&
- camitkDir () const;
-
- const bool&
- shortVersion () const;
-
- const bool&
- completeVersion () const;
-
- const bool&
- timeStamp () const;
-
- // Print usage information.
- //
- static void
- print_usage (::std::ostream&);
-
- private:
- void
- _parse (::cli::scanner&,
- ::cli::unknown_mode option,
- ::cli::unknown_mode argument);
-
- public:
- bool help_;
- bool version_;
- bool config_;
- bool printPath_;
- bool camitkDir_;
- bool shortVersion_;
- bool completeVersion_;
- bool timeStamp_;
-};
-
-#include "CommandLineOptions.ixx"
-
-#endif // COMMAND_LINE_OPTIONS_HXX
+// This code was generated by CLI, a command line interface
+// compiler for C++.
+//
+
+#ifndef COMMAND_LINE_OPTIONS_HXX
+#define COMMAND_LINE_OPTIONS_HXX
+
+#include <iosfwd>
+#include <string>
+#include <exception>
+
+namespace cli
+{
+ class unknown_mode
+ {
+ public:
+ enum value
+ {
+ skip,
+ stop,
+ fail
+ };
+
+ unknown_mode (value v);
+
+ operator value () const
+ {
+ return v_;
+ }
+
+ private:
+ value v_;
+ };
+
+ // Exceptions.
+ //
+
+ class exception: public std::exception
+ {
+ public:
+ virtual void
+ print (std::ostream&) const = 0;
+ };
+
+ std::ostream&
+ operator<< (std::ostream&, const exception&);
+
+ class unknown_option: public exception
+ {
+ public:
+ virtual
+ ~unknown_option () throw ();
+
+ unknown_option (const std::string& option);
+
+ const std::string&
+ option () const;
+
+ virtual void
+ print (std::ostream&) const;
+
+ virtual const char*
+ what () const throw ();
+
+ private:
+ std::string option_;
+ };
+
+ class unknown_argument: public exception
+ {
+ public:
+ virtual
+ ~unknown_argument () throw ();
+
+ unknown_argument (const std::string& argument);
+
+ const std::string&
+ argument () const;
+
+ virtual void
+ print (std::ostream&) const;
+
+ virtual const char*
+ what () const throw ();
+
+ private:
+ std::string argument_;
+ };
+
+ class missing_value: public exception
+ {
+ public:
+ virtual
+ ~missing_value () throw ();
+
+ missing_value (const std::string& option);
+
+ const std::string&
+ option () const;
+
+ virtual void
+ print (std::ostream&) const;
+
+ virtual const char*
+ what () const throw ();
+
+ private:
+ std::string option_;
+ };
+
+ class invalid_value: public exception
+ {
+ public:
+ virtual
+ ~invalid_value () throw ();
+
+ invalid_value (const std::string& option,
+ const std::string& value);
+
+ const std::string&
+ option () const;
+
+ const std::string&
+ value () const;
+
+ virtual void
+ print (std::ostream&) const;
+
+ virtual const char*
+ what () const throw ();
+
+ private:
+ std::string option_;
+ std::string value_;
+ };
+
+ class eos_reached: public exception
+ {
+ public:
+ virtual void
+ print (std::ostream&) const;
+
+ virtual const char*
+ what () const throw ();
+ };
+
+ class scanner
+ {
+ public:
+ virtual
+ ~scanner ();
+
+ virtual bool
+ more () = 0;
+
+ virtual const char*
+ peek () = 0;
+
+ virtual const char*
+ next () = 0;
+
+ virtual void
+ skip () = 0;
+ };
+
+ class argv_scanner: public scanner
+ {
+ public:
+ argv_scanner (int& argc, char** argv, bool erase = false);
+ argv_scanner (int start, int& argc, char** argv, bool erase = false);
+
+ int
+ end () const;
+
+ virtual bool
+ more ();
+
+ virtual const char*
+ peek ();
+
+ virtual const char*
+ next ();
+
+ virtual void
+ skip ();
+
+ private:
+ int i_;
+ int& argc_;
+ char** argv_;
+ bool erase_;
+ };
+}
+
+#include <string>
+
+class options
+{
+ public:
+
+ options (int& argc,
+ char** argv,
+ bool erase = false,
+ ::cli::unknown_mode option = ::cli::unknown_mode::fail,
+ ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
+
+ options (int start,
+ int& argc,
+ char** argv,
+ bool erase = false,
+ ::cli::unknown_mode option = ::cli::unknown_mode::fail,
+ ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
+
+ options (int& argc,
+ char** argv,
+ int& end,
+ bool erase = false,
+ ::cli::unknown_mode option = ::cli::unknown_mode::fail,
+ ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
+
+ options (int start,
+ int& argc,
+ char** argv,
+ int& end,
+ bool erase = false,
+ ::cli::unknown_mode option = ::cli::unknown_mode::fail,
+ ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
+
+ options (::cli::scanner&,
+ ::cli::unknown_mode option = ::cli::unknown_mode::fail,
+ ::cli::unknown_mode argument = ::cli::unknown_mode::stop);
+
+ // Option accessors.
+ //
+
+ const bool&
+ help () const;
+
+ const bool&
+ version () const;
+
+ const bool&
+ config () const;
+
+ const bool&
+ printPath () const;
+
+ const bool&
+ camitkDir () const;
+
+ const bool&
+ shortVersion () const;
+
+ const bool&
+ completeVersion () const;
+
+ const bool&
+ timeStamp () const;
+
+ const bool&
+ bug_report_info () const;
+
+ // Print usage information.
+ //
+ static void
+ print_usage (::std::ostream&);
+
+ private:
+ void
+ _parse (::cli::scanner&,
+ ::cli::unknown_mode option,
+ ::cli::unknown_mode argument);
+
+ public:
+ bool help_;
+ bool version_;
+ bool config_;
+ bool printPath_;
+ bool camitkDir_;
+ bool shortVersion_;
+ bool completeVersion_;
+ bool timeStamp_;
+ bool bug_report_info_;
+};
+
+#include "CommandLineOptions.ixx"
+
+#endif // COMMAND_LINE_OPTIONS_HXX
diff --git a/sdk/applications/config/CommandLineOptions.ixx b/sdk/applications/config/CommandLineOptions.ixx
index ae4d4e3..dfb1cc4 100644
--- a/sdk/applications/config/CommandLineOptions.ixx
+++ b/sdk/applications/config/CommandLineOptions.ixx
@@ -1,158 +1,164 @@
-// This code was generated by CLI, a command line interface
-// compiler for C++.
-//
-
-namespace cli
-{
- // unknown_mode
- //
- inline unknown_mode::
- unknown_mode (value v)
- : v_ (v)
- {
- }
-
- // exception
- //
- inline std::ostream&
- operator<< (std::ostream& os, const exception& e)
- {
- e.print (os);
- return os;
- }
-
- // unknown_option
- //
- inline unknown_option::
- unknown_option (const std::string& option)
- : option_ (option)
- {
- }
-
- inline const std::string& unknown_option::
- option () const
- {
- return option_;
- }
-
- // unknown_argument
- //
- inline unknown_argument::
- unknown_argument (const std::string& argument)
- : argument_ (argument)
- {
- }
-
- inline const std::string& unknown_argument::
- argument () const
- {
- return argument_;
- }
-
- // missing_value
- //
- inline missing_value::
- missing_value (const std::string& option)
- : option_ (option)
- {
- }
-
- inline const std::string& missing_value::
- option () const
- {
- return option_;
- }
-
- // invalid_value
- //
- inline invalid_value::
- invalid_value (const std::string& option,
- const std::string& value)
- : option_ (option), value_ (value)
- {
- }
-
- inline const std::string& invalid_value::
- option () const
- {
- return option_;
- }
-
- inline const std::string& invalid_value::
- value () const
- {
- return value_;
- }
-
- // argv_scanner
- //
- inline argv_scanner::
- argv_scanner (int& argc, char** argv, bool erase)
- : i_ (1), argc_ (argc), argv_ (argv), erase_ (erase)
- {
- }
-
- inline argv_scanner::
- argv_scanner (int start, int& argc, char** argv, bool erase)
- : i_ (start), argc_ (argc), argv_ (argv), erase_ (erase)
- {
- }
-
- inline int argv_scanner::
- end () const
- {
- return i_;
- }
-}
-
-// options
-//
-
-inline const bool& options::
-help () const
-{
- return this->help_;
-}
-
-inline const bool& options::
-version () const
-{
- return this->version_;
-}
-
-inline const bool& options::
-config () const
-{
- return this->config_;
-}
-
-inline const bool& options::
-printPath () const
-{
- return this->printPath_;
-}
-
-inline const bool& options::
-camitkDir () const
-{
- return this->camitkDir_;
-}
-
-inline const bool& options::
-shortVersion () const
-{
- return this->shortVersion_;
-}
-
-inline const bool& options::
-completeVersion () const
-{
- return this->completeVersion_;
-}
-
-inline const bool& options::
-timeStamp () const
-{
- return this->timeStamp_;
-}
-
+// This code was generated by CLI, a command line interface
+// compiler for C++.
+//
+
+namespace cli
+{
+ // unknown_mode
+ //
+ inline unknown_mode::
+ unknown_mode (value v)
+ : v_ (v)
+ {
+ }
+
+ // exception
+ //
+ inline std::ostream&
+ operator<< (std::ostream& os, const exception& e)
+ {
+ e.print (os);
+ return os;
+ }
+
+ // unknown_option
+ //
+ inline unknown_option::
+ unknown_option (const std::string& option)
+ : option_ (option)
+ {
+ }
+
+ inline const std::string& unknown_option::
+ option () const
+ {
+ return option_;
+ }
+
+ // unknown_argument
+ //
+ inline unknown_argument::
+ unknown_argument (const std::string& argument)
+ : argument_ (argument)
+ {
+ }
+
+ inline const std::string& unknown_argument::
+ argument () const
+ {
+ return argument_;
+ }
+
+ // missing_value
+ //
+ inline missing_value::
+ missing_value (const std::string& option)
+ : option_ (option)
+ {
+ }
+
+ inline const std::string& missing_value::
+ option () const
+ {
+ return option_;
+ }
+
+ // invalid_value
+ //
+ inline invalid_value::
+ invalid_value (const std::string& option,
+ const std::string& value)
+ : option_ (option), value_ (value)
+ {
+ }
+
+ inline const std::string& invalid_value::
+ option () const
+ {
+ return option_;
+ }
+
+ inline const std::string& invalid_value::
+ value () const
+ {
+ return value_;
+ }
+
+ // argv_scanner
+ //
+ inline argv_scanner::
+ argv_scanner (int& argc, char** argv, bool erase)
+ : i_ (1), argc_ (argc), argv_ (argv), erase_ (erase)
+ {
+ }
+
+ inline argv_scanner::
+ argv_scanner (int start, int& argc, char** argv, bool erase)
+ : i_ (start), argc_ (argc), argv_ (argv), erase_ (erase)
+ {
+ }
+
+ inline int argv_scanner::
+ end () const
+ {
+ return i_;
+ }
+}
+
+// options
+//
+
+inline const bool& options::
+help () const
+{
+ return this->help_;
+}
+
+inline const bool& options::
+version () const
+{
+ return this->version_;
+}
+
+inline const bool& options::
+config () const
+{
+ return this->config_;
+}
+
+inline const bool& options::
+printPath () const
+{
+ return this->printPath_;
+}
+
+inline const bool& options::
+camitkDir () const
+{
+ return this->camitkDir_;
+}
+
+inline const bool& options::
+shortVersion () const
+{
+ return this->shortVersion_;
+}
+
+inline const bool& options::
+completeVersion () const
+{
+ return this->completeVersion_;
+}
+
+inline const bool& options::
+timeStamp () const
+{
+ return this->timeStamp_;
+}
+
+inline const bool& options::
+bug_report_info () const
+{
+ return this->bug_report_info_;
+}
+
diff --git a/sdk/applications/config/main.cpp b/sdk/applications/config/main.cpp
index 8c1b0b4..fd56cf4 100644
--- a/sdk/applications/config/main.cpp
+++ b/sdk/applications/config/main.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -63,9 +63,9 @@ int main(int argc, char *argv[]) {
if (compiledFromPackageSource())
std::cout << "Compiled using package source." << std::endl;
else {
- std::cout << "Compiled using svn";
- if (hasMoreSvnInformation()) {
- std::cout << " Rev: " << svnRevision() << ", Date: " << svnDate() << std::endl;
+ std::cout << "Compiled using git";
+ if (hasMoreGitInformation()) { // Check if CAMITK_GIT_FOUND can be set to "1" otherwise we never get into this 'if'
+ std::cout << " Hash: " << gitHash() << ", Date: " << gitDate() << std::endl;
}
std::cout << "." << std::endl;
}
@@ -99,6 +99,15 @@ int main(int argc, char *argv[]) {
// print the configuration on the std::cout
std::cout << Core::getConfig().toStdString() << std::endl;
return EXIT_SUCCESS;
+ } else if (o.bug_report_info()) {
+ // init the camitk application context without auto-loading all extensions
+ Application a("camitk-config", argc, argv);
+ // avoid all redirection to console
+ MainWindow *defaultMainWindow = dynamic_cast<MainWindow*>(a.getMainWindow());
+ defaultMainWindow->redirectToConsole(false);
+ // print the configuration on the std::cout
+ std::cout << Core::getBugReport().toStdString() << std::endl;
+ return EXIT_SUCCESS;
} else {
usage(argv[0]);
//TODO: Show some GUI (for e.g. with "copy to clipboard" and "email" buttons)
diff --git a/sdk/applications/config/resources/camitk-config.1.in b/sdk/applications/config/resources/camitk-config.1.in
index 9e5825d..e1460a3 100644
--- a/sdk/applications/config/resources/camitk-config.1.in
+++ b/sdk/applications/config/resources/camitk-config.1.in
@@ -1,55 +1,58 @@
-.TH CAMITK- at APPLICATION_NAME@ "1" "@CURRENT_DATE@" "camitk- at APPLICATION_NAME@ @CAMITK_VERSION_MAJOR at .@CAMITK_VERSION_MINOR@" "User Commands"
-.SH "NAME"
-camitk- at APPLICATION_NAME@ \- CamiTK Configuration Utility
-.SH "SYNOPSIS"
-.B camitk- at APPLICATION_NAME@
-[\fIOPTIONS\fR]...
-.SH "DESCRIPTION"
-.B camitk\- at APPLICATION_NAME@ is build using CamiTK @CAMITK_VERSION_MAJOR at .@CAMITK_VERSION_MINOR@
-.br
-Please visit http://camitk.imag.fr for more information.
-.br
-(c) UJF\-Grenoble 1, CNRS, TIMC\-IMAG UMR 5525
-.PP
-camitk\- at APPLICATION_NAME@ is the configuration utility for CamiTK,
-a medical image analysis and modeling software.
-.PP
-The targeted users are in R&D departments or laboratories.
-camitk\- at APPLICATION_NAME@ provides an easy command-line and interactive access to all
-your CamiTK configuration and environment setup.
-.PP
-.SH "OPTIONS".\"
-.\" The following documentation was generated by CLI, a command
-.\" line interface compiler for C++.
-.\"
-.IP "\fB--help\fP|\fB-h\fP"
-Print usage information and exit\.
-
-.IP "\fB--version\fP|\fB-v\fP"
-Print CamiTK version message
-
-.IP "\fB--config\fP|\fB-c\fP"
-Print all information for a complete CamiTK diagnosis and exit
-
-.IP "\fB--printPath\fP|\fB-p\fP"
-Print CamiTK path on the standard output and exit
-
-.IP "\fB--camitkDir\fP|\fB-d\fP"
-Print CAMITK_DIR (the installation directory) and exit
-
-.IP "\fB--shortVersion\fP|\fB-s\fP"
-Print CamiTK short version string
-
-.IP "\fB--completeVersion\fP|\fB-vv\fP"
-Print CamiTK complete version number (including patch number)
-
-.IP "\fB--timeStamp\fP|\fB-t\fP"
-Generate a time stamp that includes current system date and time
-
-.SH "AUTHORS"
-CamiTK and camitk\- at APPLICATION_NAME@ is currently developed by the UJF\-Grenoble 1, CNRS,
-in the TIMC\-IMAG UMR 5525 laboratory.
-.SH "SEE ALSO"
-The full documentation and tutorials for
-.B CamiTK
-are available at <\fBhttp://camitk.imag.fr\fR>
+.TH CAMITK- at APPLICATION_NAME@ "1" "@CURRENT_DATE@" "camitk- at APPLICATION_NAME@ @CAMITK_VERSION_MAJOR at .@CAMITK_VERSION_MINOR@" "User Commands"
+.SH "NAME"
+camitk- at APPLICATION_NAME@ \- CamiTK Configuration Utility
+.SH "SYNOPSIS"
+.B camitk- at APPLICATION_NAME@
+[\fIOPTIONS\fR]...
+.SH "DESCRIPTION"
+.B camitk\- at APPLICATION_NAME@ is build using CamiTK @CAMITK_VERSION_MAJOR at .@CAMITK_VERSION_MINOR@
+.br
+Please visit http://camitk.imag.fr for more information.
+.br
+(c) UJF\-Grenoble 1, CNRS, TIMC\-IMAG UMR 5525
+.PP
+camitk\- at APPLICATION_NAME@ is the configuration utility for CamiTK,
+a medical image analysis and modeling software.
+.PP
+The targeted users are in R&D departments or laboratories.
+camitk\- at APPLICATION_NAME@ provides an easy command-line and interactive access to all
+your CamiTK configuration and environment setup.
+.PP
+.SH "OPTIONS".\"
+.\" The following documentation was generated by CLI, a command
+.\" line interface compiler for C++.
+.\"
+.IP "\fB--help\fP|\fB-h\fP"
+Print usage information and exit\.
+
+.IP "\fB--version\fP|\fB-v\fP"
+Print CamiTK version message
+
+.IP "\fB--config\fP|\fB-c\fP"
+Print all information for a complete CamiTK diagnosis and exit
+
+.IP "\fB--printPath\fP|\fB-p\fP"
+Print CamiTK path on the standard output and exit
+
+.IP "\fB--camitkDir\fP|\fB-d\fP"
+Print CAMITK_DIR (the installation directory) and exit
+
+.IP "\fB--shortVersion\fP|\fB-s\fP"
+Print CamiTK short version string
+
+.IP "\fB--completeVersion\fP|\fB-vv\fP"
+Print CamiTK complete version number (including patch number)
+
+.IP "\fB--timeStamp\fP|\fB-t\fP"
+Generate a time stamp that includes current system date and time
+
+.IP "\fB--bug-report-info\fP|\fB-b\fP"
+Generate a report bug template with the CamiTK diagnosis in it
+
+.SH "AUTHORS"
+CamiTK and camitk\- at APPLICATION_NAME@ is currently developed by the UJF\-Grenoble 1, CNRS,
+in the TIMC\-IMAG UMR 5525 laboratory.
+.SH "SEE ALSO"
+The full documentation and tutorials for
+.B CamiTK
+are available at <\fBhttp://camitk.imag.fr\fR>
diff --git a/sdk/applications/imp/ImpMainWindow.cpp b/sdk/applications/imp/ImpMainWindow.cpp
index 826826b..f694e41 100644
--- a/sdk/applications/imp/ImpMainWindow.cpp
+++ b/sdk/applications/imp/ImpMainWindow.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,6 +38,8 @@
#include <Explorer.h>
#include <FrameExplorer.h>
#include <PropertyExplorer.h>
+#include <Property.h>
+#include <PropertyObject.h>
using namespace camitk;
@@ -503,11 +505,8 @@ void ImpMainWindow::editSettings() {
// create the dialog
SettingsDialog settingsDialog;
- // construct a dynamic property object
- QObject *myProperties = new QObject;
- myProperties->setObjectName(Application::getName());
- myProperties->setProperty ( "autoLoadLastOpened", autoLoadLastOpened );
- settingsDialog.editSettings ( myProperties );
+ // show the properties of the CamiTK application
+ settingsDialog.editSettings(dynamic_cast<Application*>(qApp)->getPropertyObject());
// edit all viewers that have properties
foreach ( Viewer *v, viewers ) {
@@ -523,18 +522,23 @@ void ImpMainWindow::editSettings() {
updateRecentDocumentsMenu();
}
- // update the property
- autoLoadLastOpened = myProperties->property ( "autoLoadLastOpened" ).toBool();
- // save it in the settings
+ // update the CamiTK IMP properties
+ autoLoadLastOpened = dynamic_cast<Application*>(qApp)->getPropertyObject()->property ( dynamic_cast<Application*>(qApp)->getAutoloadLastOpenedComponentsProperty()->getName().toStdString().c_str()).toBool();
+
+ // save application properties as settings
QSettings & settings = Application::getSettings();
settings.beginGroup ( Application::getName() + ".Application" );
- settings.setValue ( "autoLoadLastOpened", autoLoadLastOpened );
+ // auto load last opened components
+ // Note: prefer simple key names: http://doc.qt.io/qt-4.8/qsettings.html#section-and-key-syntax
+ settings.setValue ( "autoLoadLastOpened",
+ dynamic_cast<Application*>(qApp)->getPropertyObject()->property(dynamic_cast<Application*>(qApp)->getAutoloadLastOpenedComponentsProperty()->getName().toStdString().c_str()));
+ // default target component
+ settings.setValue ( "targetedPositionningPolicy",
+ dynamic_cast<Application*>(qApp)->getPropertyObject()->property(dynamic_cast<Application*>(qApp)->getDefaultTargetedComponentProperty()->getName().toStdString().c_str()));
settings.endGroup();
// check if there are anything to change in the data directory menu (for data directory manager)
updateOpenDirectoryMenu();
-
- delete myProperties;
}
// ------------------------------ initSettings -------------------------------
@@ -546,7 +550,17 @@ void ImpMainWindow::initSettings() {
settings.beginGroup (Application::getName() + ".Application");
// the autoload option
- autoLoadLastOpened = settings.value ( "autoLoadLastOpened", false ).toBool(); // default false
+ // Note: prefer simple key names: http://doc.qt.io/qt-4.8/qsettings.html#section-and-key-syntax
+ autoLoadLastOpened = settings.value ( "autoLoadLastOpened",
+ false).toBool(); // default false
+ dynamic_cast<Application*>(qApp)->getPropertyObject()->setProperty(
+ dynamic_cast<Application*>(qApp)->getAutoloadLastOpenedComponentsProperty()->getName().toStdString().c_str(), autoLoadLastOpened);
+
+ // the frame policy option
+ Application::TargetPositionningMethods framePolicy = (Application::TargetPositionningMethods) settings.value ( "targetedPositionningPolicy", 0).toInt();
+ dynamic_cast<Application*>(qApp)->getPropertyObject()->setProperty(
+ dynamic_cast<Application*>(qApp)->getDefaultTargetedComponentProperty()->getName().toStdString().c_str(), framePolicy);
+
settings.endGroup();
}
diff --git a/sdk/applications/imp/ImpMainWindow.h b/sdk/applications/imp/ImpMainWindow.h
index d59368f..8e568ba 100644
--- a/sdk/applications/imp/ImpMainWindow.h
+++ b/sdk/applications/imp/ImpMainWindow.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,6 +30,8 @@
// -- Core stuff
#include <MainWindow.h>
+#include <Application.h>
+
/**
* @ingroup group_sdk_application_imp
*
@@ -225,6 +227,12 @@ private:
///@}
+ /** @name Frame management attributes */
+ ///@{
+ /// How to handle the new target (i.e. component created by an action) frame?
+ //camitk::Application::TargetPositionningMethods defaultTargetPositionningMethod;
+
+ ///@}
private slots:
diff --git a/sdk/applications/imp/main.cpp b/sdk/applications/imp/main.cpp
index a5dc78c..5c5082d 100644
--- a/sdk/applications/imp/main.cpp
+++ b/sdk/applications/imp/main.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/wizard/ActionAddParameterState.cpp b/sdk/applications/wizard/ActionAddParameterState.cpp
index 0dee9a3..2e3905c 100644
--- a/sdk/applications/wizard/ActionAddParameterState.cpp
+++ b/sdk/applications/wizard/ActionAddParameterState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "ActionAddParameterState.h"
#include "ActionAddParameterWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionCreationState.h"
#include "ActionParameterWidget.h"
@@ -36,12 +36,12 @@
#include <Parameter.hxx>
-/** Constructor */
-ActionAddParameterState::ActionAddParameterState(QString name, ActionAddParameterWidget * widget, DorothyMainWindow * mainWindow, ActionCreationState * parent)
+
+ActionAddParameterState::ActionAddParameterState(QString name, ActionAddParameterWidget * widget, WizardMainWindow * mainWindow, ActionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domAction = NULL;
}
-/** Destructor */
+
ActionAddParameterState::~ActionAddParameterState() {}
void ActionAddParameterState::resetDomAction(cepcoreschema::Action * domAction) {
diff --git a/sdk/applications/wizard/ActionAddParameterState.h b/sdk/applications/wizard/ActionAddParameterState.h
index 449fd79..fac372e 100644
--- a/sdk/applications/wizard/ActionAddParameterState.h
+++ b/sdk/applications/wizard/ActionAddParameterState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,7 +43,7 @@ class Action;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to add parameters in the action
*
*/
class ActionAddParameterState : public WizardState {
@@ -51,8 +51,10 @@ class ActionAddParameterState : public WizardState {
Q_OBJECT;
public:
- ActionAddParameterState(QString name, ActionAddParameterWidget * widget, DorothyMainWindow * mainWindow, ActionCreationState * parent);
+ /** Constructor */
+ ActionAddParameterState(QString name, ActionAddParameterWidget * widget, WizardMainWindow * mainWindow, ActionCreationState * parent);
+ /** Destructor */
~ActionAddParameterState();
void resetDomAction(cepcoreschema::Action * domAction);
diff --git a/sdk/applications/wizard/ActionAddParameterWidget.cpp b/sdk/applications/wizard/ActionAddParameterWidget.cpp
index e75633f..e4ce1e4 100644
--- a/sdk/applications/wizard/ActionAddParameterWidget.cpp
+++ b/sdk/applications/wizard/ActionAddParameterWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,17 +39,18 @@
#include <sstream>
-/** Constructor */
+
ActionAddParameterWidget::ActionAddParameterWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault();
}
-/** Destructor */
+
ActionAddParameterWidget::~ActionAddParameterWidget() {
}
void ActionAddParameterWidget::nextButtonClicked() {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (isOneNonAsciiParameter()) {
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultAscii);
} else if (isOneNoName()) {
@@ -57,6 +58,9 @@ void ActionAddParameterWidget::nextButtonClicked() {
} else {
emit next();
}
+#else
+ emit next();
+#endif
}
void ActionAddParameterWidget::previousButtonClicked() {
@@ -93,10 +97,10 @@ bool ActionAddParameterWidget::isOneNonAsciiParameter() {
QString paramDescription = (*it)->getDescription();
QString paramDefaultValue = (*it)->getDefaultValue();
- if ((paramName.toUtf8() != paramName.toAscii()) ||
- (paramType.toUtf8() != paramType.toAscii()) ||
- (paramDescription.toUtf8() != paramDescription.toAscii()) ||
- (paramDefaultValue.toUtf8() != paramDefaultValue.toAscii())) {
+ if ((paramName.toUtf8() != paramName.toLatin1()) ||
+ (paramType.toUtf8() != paramType.toLatin1()) ||
+ (paramDescription.toUtf8() != paramDescription.toLatin1()) ||
+ (paramDefaultValue.toUtf8() != paramDefaultValue.toLatin1())) {
oneNonAscii = true;
}
it++;
diff --git a/sdk/applications/wizard/ActionAddParameterWidget.h b/sdk/applications/wizard/ActionAddParameterWidget.h
index f176998..358f2ef 100644
--- a/sdk/applications/wizard/ActionAddParameterWidget.h
+++ b/sdk/applications/wizard/ActionAddParameterWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,9 @@ class ActionParameterWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to add or remove parameters to the action
+ *
+ * The widget manages a list of ActionParameterWidget to define each parameter.
*
*/
class ActionAddParameterWidget : public QWidget {
@@ -46,7 +48,9 @@ class ActionAddParameterWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionAddParameterWidget(QWidget * parent);
+ /** Destructor */
~ActionAddParameterWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ActionAddParameterWidget.ui b/sdk/applications/wizard/ActionAddParameterWidget.ui
index 82a9528..cb223f5 100644
--- a/sdk/applications/wizard/ActionAddParameterWidget.ui
+++ b/sdk/applications/wizard/ActionAddParameterWidget.ui
@@ -616,22 +616,6 @@
<property name="spacing">
<number>1</number>
</property>
- <item row="0" column="1">
- <widget class="QLabel" name="addParameterLabel">
- <property name="font">
- <font>
- <family>Sans Serif</family>
- <pointsize>16</pointsize>
- </font>
- </property>
- <property name="text">
- <string>Action input parameters</string>
- </property>
- <property name="alignment">
- <set>Qt::AlignCenter</set>
- </property>
- </widget>
- </item>
<item row="0" column="0">
<widget class="QLabel" name="addParameterQM">
<property name="minimumSize">
@@ -663,30 +647,19 @@
</property>
</widget>
</item>
- </layout>
- </item>
- <item>
- <layout class="QHBoxLayout" name="horizontalLayout">
- <item>
- <widget class="QPushButton" name="addParameterPushButton">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="minimumSize">
- <size>
- <width>0</width>
- <height>32</height>
- </size>
+ <item row="0" column="1">
+ <widget class="QLabel" name="addParameterLabel">
+ <property name="font">
+ <font>
+ <family>MS Shell Dlg 2</family>
+ <pointsize>12</pointsize>
+ </font>
</property>
<property name="text">
- <string>Add a Parameter</string>
+ <string>Action input parameters</string>
</property>
- <property name="icon">
- <iconset resource="wizard.qrc">
- <normaloff>:/resources/edit_add.png</normaloff>:/resources/edit_add.png</iconset>
+ <property name="alignment">
+ <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
</property>
</widget>
</item>
@@ -708,8 +681,8 @@
<rect>
<x>0</x>
<y>0</y>
- <width>954</width>
- <height>385</height>
+ <width>948</width>
+ <height>384</height>
</rect>
</property>
<layout class="QVBoxLayout" name="verticalLayout_2">
@@ -721,6 +694,33 @@
</widget>
</item>
<item>
+ <layout class="QHBoxLayout" name="horizontalLayout">
+ <item>
+ <widget class="QPushButton" name="addParameterPushButton">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>0</width>
+ <height>32</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Add a Parameter</string>
+ </property>
+ <property name="icon">
+ <iconset resource="wizard.qrc">
+ <normaloff>:/resources/edit_add.png</normaloff>:/resources/edit_add.png</iconset>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
<layout class="QHBoxLayout" name="horizontalLayout_5">
<item>
<widget class="QPushButton" name="previousPushButton">
diff --git a/sdk/applications/wizard/ActionClassificationState.cpp b/sdk/applications/wizard/ActionClassificationState.cpp
index e0a417b..dc57dfa 100644
--- a/sdk/applications/wizard/ActionClassificationState.cpp
+++ b/sdk/applications/wizard/ActionClassificationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#include "ActionClassificationState.h"
#include "ActionClassificationWidget.h"
#include "ActionTagWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionCreationState.h"
// includes from coreschema
@@ -35,12 +35,12 @@
#include <Classification.hxx>
-/** Constructor */
-ActionClassificationState::ActionClassificationState(QString name, ActionClassificationWidget * widget, DorothyMainWindow * mainWindow, ActionCreationState * parent)
+
+ActionClassificationState::ActionClassificationState(QString name, ActionClassificationWidget * widget, WizardMainWindow * mainWindow, ActionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domAction = NULL;
}
-/** Destructor */
+
ActionClassificationState::~ActionClassificationState() {}
void ActionClassificationState::resetDomAction(cepcoreschema::Action *domAction) {
diff --git a/sdk/applications/wizard/ActionClassificationState.h b/sdk/applications/wizard/ActionClassificationState.h
index 7cd541a..0cae2f7 100644
--- a/sdk/applications/wizard/ActionClassificationState.h
+++ b/sdk/applications/wizard/ActionClassificationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class Action;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to class the action and to attribute a tag to it.
*
*/
class ActionClassificationState : public WizardState {
@@ -48,8 +48,10 @@ class ActionClassificationState : public WizardState {
Q_OBJECT;
public:
- ActionClassificationState(QString name, ActionClassificationWidget * widget, DorothyMainWindow * mainWindow, ActionCreationState * parent);
+ /** Constructor */
+ ActionClassificationState(QString name, ActionClassificationWidget * widget, WizardMainWindow * mainWindow, ActionCreationState * parent);
+ /** Destructor */
~ActionClassificationState();
void resetDomAction(cepcoreschema::Action * domAction);
diff --git a/sdk/applications/wizard/ActionClassificationWidget.cpp b/sdk/applications/wizard/ActionClassificationWidget.cpp
index 8816990..12fe55d 100644
--- a/sdk/applications/wizard/ActionClassificationWidget.cpp
+++ b/sdk/applications/wizard/ActionClassificationWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,12 +32,11 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
ActionClassificationWidget::ActionClassificationWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault();
}
-/** Destructor */
+
ActionClassificationWidget::~ActionClassificationWidget() {}
void ActionClassificationWidget::setToDefault() {
@@ -57,7 +56,8 @@ void ActionClassificationWidget::setToDefault() {
void ActionClassificationWidget::nextButtonClicked() {
QString family = ui.actionFamilyItself->text();
- if (family.toUtf8() != family.toAscii()) {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
+ if (family.toUtf8() != family.toLatin1()) {
ui.actionFamilyStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultAscii);
@@ -74,6 +74,9 @@ void ActionClassificationWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(normalStyle);
emit next();
}
+#else
+ emit next();
+#endif
}
void ActionClassificationWidget::previousButtonClicked() {
@@ -91,7 +94,7 @@ bool ActionClassificationWidget::isOneNonAsciiTag() {
while ((it != list.end()) && (! oneNonAscii)) {
QString tag = (*it)->getTag();
- if (tag.toUtf8() != tag.toAscii()) {
+ if (tag.toUtf8() != tag.toLatin1()) {
oneNonAscii = true;
}
it++;
diff --git a/sdk/applications/wizard/ActionClassificationWidget.h b/sdk/applications/wizard/ActionClassificationWidget.h
index e4eee91..6379720 100644
--- a/sdk/applications/wizard/ActionClassificationWidget.h
+++ b/sdk/applications/wizard/ActionClassificationWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,7 +37,7 @@ class ActionTagWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to class the action and to attribute a tag to it.
*
*/
class ActionClassificationWidget : public QWidget {
@@ -45,7 +45,9 @@ class ActionClassificationWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionClassificationWidget(QWidget * parent);
+ /** Destructor */
~ActionClassificationWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ActionClassificationWidget.ui b/sdk/applications/wizard/ActionClassificationWidget.ui
index 696e21a..e9758e9 100644
--- a/sdk/applications/wizard/ActionClassificationWidget.ui
+++ b/sdk/applications/wizard/ActionClassificationWidget.ui
@@ -621,6 +621,19 @@
</layout>
</item>
<item>
+ <spacer name="verticalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<layout class="QGridLayout" name="gridLayout">
<property name="rightMargin">
<number>21</number>
diff --git a/sdk/applications/wizard/ActionCreationState.cpp b/sdk/applications/wizard/ActionCreationState.cpp
index 7edfe79..a88f06c 100644
--- a/sdk/applications/wizard/ActionCreationState.cpp
+++ b/sdk/applications/wizard/ActionCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ActionCreationState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionCreationState.h"
#include "ActionDescriptionWidget.h"
@@ -44,8 +44,8 @@
#include <QMessageBox>
#include <iostream>
-/** Constructor */
-ActionCreationState::ActionCreationState(QString name, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent) : QState(parent) {
+
+ActionCreationState::ActionCreationState(QString name, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent) : QState(parent) {
this->name = name;
this->cancelled = false;
this->domAction = NULL;
@@ -57,7 +57,7 @@ ActionCreationState::ActionCreationState(QString name, DorothyMainWindow * mainW
}
-/** Destructor */
+
ActionCreationState::~ActionCreationState() {}
void ActionCreationState::resetDomActionExtension(cepcoreschema::ActionExtension *domActionExtension) {
@@ -102,7 +102,7 @@ void ActionCreationState::actionCancelled() {
emit nextACS();
}
-void ActionCreationState::createSubStates(DorothyMainWindow * mainWindow) {
+void ActionCreationState::createSubStates(WizardMainWindow * mainWindow) {
actionDescriptionWidget = new ActionDescriptionWidget(NULL);
actionDescriptionState = new ActionDescriptionState("Action Description", actionDescriptionWidget, mainWindow, domCep, this);
diff --git a/sdk/applications/wizard/ActionCreationState.h b/sdk/applications/wizard/ActionCreationState.h
index 03ff6d9..4a856b3 100644
--- a/sdk/applications/wizard/ActionCreationState.h
+++ b/sdk/applications/wizard/ActionCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
class ActionExtensionCreationState;
// Sub-states
@@ -53,7 +53,9 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create one action.
+ *
+ * This state manages sub-state to create one action.
*
*/
class ActionCreationState : public QState {
@@ -61,7 +63,9 @@ class ActionCreationState : public QState {
Q_OBJECT;
public:
- ActionCreationState(QString name, DorothyMainWindow * mainWidnow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent);
+ /** Constructor */
+ ActionCreationState(QString name, WizardMainWindow * mainWidnow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent);
+ /** Destructor */
~ActionCreationState();
void resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension);
@@ -93,7 +97,7 @@ protected:
private:
- void createSubStates(DorothyMainWindow * mainWindow);
+ void createSubStates(WizardMainWindow * mainWindow);
bool cancelled;
QString name;
diff --git a/sdk/applications/wizard/ActionDescriptionState.cpp b/sdk/applications/wizard/ActionDescriptionState.cpp
index 0748110..8c5a758 100644
--- a/sdk/applications/wizard/ActionDescriptionState.cpp
+++ b/sdk/applications/wizard/ActionDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "ActionDescriptionState.h"
#include "ActionDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionCreationState.h"
// includes from coreschema
@@ -42,14 +42,14 @@
// temporary
#include <iostream>
-/** Constructor */
-ActionDescriptionState::ActionDescriptionState(QString name, ActionDescriptionWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionCreationState * parent)
+
+ActionDescriptionState::ActionDescriptionState(QString name, ActionDescriptionWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domAction = NULL;
this->domActionExtension = NULL;
this->domCep = domCep;
}
-/** Destructor */
+
ActionDescriptionState::~ActionDescriptionState() {}
void ActionDescriptionState::resetDomAction(cepcoreschema::Action * domAction, cepcoreschema::ActionExtension * domActionExtension) {
@@ -74,13 +74,20 @@ void ActionDescriptionState::onEntry(QEvent *event) {
}
// Check existing CEP components
+ // CS: problem to get components name.
+ // The loop was under component extension, the corresction is to loop under components for each componentExtension.
if (domCep->componentExtensions().present()) {
- cepcoreschema::ComponentExtensions::componentExtension_sequence cepComponents = domCep->componentExtensions().get().componentExtension();
- cepcoreschema::ComponentExtensions::componentExtension_iterator it;
- for (it = cepComponents.begin(); it != cepComponents.end(); it++) {
- QString componentName = (*it).name().c_str();
- componentName = ClassNameHandler::getClassName(componentName);
- actionDescriptionWidget->addPossibleComponent(componentName);
+ cepcoreschema::ComponentExtensions::componentExtension_sequence cepComponentExtensions = domCep->componentExtensions().get().componentExtension();
+ cepcoreschema::ComponentExtensions::componentExtension_iterator itCompExt;
+ // Loop on ComponentExtensions
+ for (itCompExt = cepComponentExtensions.begin(); itCompExt != cepComponentExtensions.end(); itCompExt++) {
+ cepcoreschema::Components::component_iterator itComp;
+ // Loop on components for each componentExtension.
+ for (itComp = itCompExt->components().component().begin(); itComp != itCompExt->components().component().end(); itComp++) {
+ QString componentName = (*itComp).name().c_str();
+ componentName = ClassNameHandler::getClassName(componentName);
+ actionDescriptionWidget->addPossibleComponent(componentName);
+ }
}
}
}
diff --git a/sdk/applications/wizard/ActionDescriptionState.h b/sdk/applications/wizard/ActionDescriptionState.h
index 63904c7..cb9ebd1 100644
--- a/sdk/applications/wizard/ActionDescriptionState.h
+++ b/sdk/applications/wizard/ActionDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -42,7 +42,7 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to describe action
*
*/
class ActionDescriptionState : public WizardState {
@@ -50,8 +50,10 @@ class ActionDescriptionState : public WizardState {
Q_OBJECT;
public:
- ActionDescriptionState(QString name, ActionDescriptionWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep,ActionCreationState * parent);
+ /** Constructor */
+ ActionDescriptionState(QString name, ActionDescriptionWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep,ActionCreationState * parent);
+ /** Destructor */
~ActionDescriptionState();
void resetDomAction(cepcoreschema::Action * domAction, cepcoreschema::ActionExtension * domActionExtension);
diff --git a/sdk/applications/wizard/ActionDescriptionWidget.cpp b/sdk/applications/wizard/ActionDescriptionWidget.cpp
index f1f5bbb..05d616e 100644
--- a/sdk/applications/wizard/ActionDescriptionWidget.cpp
+++ b/sdk/applications/wizard/ActionDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,17 +32,18 @@
#include <QMessageBox>
#include <QStringList>
-/** Constructor */
+
ActionDescriptionWidget::ActionDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault(defaultActionExtensionName);
}
-/** Destructor */
+
ActionDescriptionWidget::~ActionDescriptionWidget() {}
void ActionDescriptionWidget::nextButtonClicked() {
QString actionName = ui.actionNameItself->text();
QString actionDescription = ui.actionGoalItself->toPlainText();
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (actionName == actionExtensionName) {
ui.actionNameStar->setStyleSheet(enhancedStyle);
ui.actionGoalStar->setStyleSheet(normalStyle);
@@ -50,7 +51,7 @@ void ActionDescriptionWidget::nextButtonClicked() {
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultActionNameAndExtension);
- } else if (actionName.toUtf8() != actionName.toAscii()) {
+ } else if (actionName.toUtf8() != actionName.toLatin1()) {
ui.actionNameStar->setStyleSheet(enhancedStyle);
ui.actionGoalStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -62,7 +63,7 @@ void ActionDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealActionName);
- } else if (actionDescription.toUtf8() != actionDescription.toAscii()) {
+ } else if (actionDescription.toUtf8() != actionDescription.toLatin1()) {
ui.actionNameStar->setStyleSheet(normalStyle);
ui.actionGoalStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -77,6 +78,9 @@ void ActionDescriptionWidget::nextButtonClicked() {
} else {
emit next();
}
+#else
+ emit next();
+#endif
}
void ActionDescriptionWidget::cancelButtonClicked() {
diff --git a/sdk/applications/wizard/ActionDescriptionWidget.h b/sdk/applications/wizard/ActionDescriptionWidget.h
index ca2322f..914e753 100644
--- a/sdk/applications/wizard/ActionDescriptionWidget.h
+++ b/sdk/applications/wizard/ActionDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to describe action
*
*/
class ActionDescriptionWidget : public QWidget {
@@ -43,7 +43,9 @@ class ActionDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor * */
ActionDescriptionWidget(QWidget * parent);
+ /** Destructor */
~ActionDescriptionWidget();
void setToDefault(QString actionExtensionName);
diff --git a/sdk/applications/wizard/ActionExtensionCreationState.cpp b/sdk/applications/wizard/ActionExtensionCreationState.cpp
index b80bc12..d94abca 100644
--- a/sdk/applications/wizard/ActionExtensionCreationState.cpp
+++ b/sdk/applications/wizard/ActionExtensionCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ActionExtensionCreationState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionDescriptionWidget.h"
#include "ActionExtensionDescriptionState.h"
@@ -44,8 +44,8 @@
#include <QMessageBox>
#include <iostream>
-/** Constructor */
-ActionExtensionCreationState::ActionExtensionCreationState(QString name, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep) : QState() {
+
+ActionExtensionCreationState::ActionExtensionCreationState(QString name, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep) : QState() {
this->cancelled = false;
this->name = name;
this->domCep = domCep;
@@ -55,7 +55,7 @@ ActionExtensionCreationState::ActionExtensionCreationState(QString name, Dorothy
}
-/** Destructor */
+
ActionExtensionCreationState::~ActionExtensionCreationState() {}
@@ -106,7 +106,7 @@ void ActionExtensionCreationState::extensionCancelled() {
emit next();
}
-void ActionExtensionCreationState::createSubStates(DorothyMainWindow * mainWindow) {
+void ActionExtensionCreationState::createSubStates(WizardMainWindow * mainWindow) {
actionExtensionDescriptionWidget = new ActionExtensionDescriptionWidget(NULL);
actionExtensionDescriptionState = new ActionExtensionDescriptionState("Action Extension", actionExtensionDescriptionWidget, mainWindow, this);
diff --git a/sdk/applications/wizard/ActionExtensionCreationState.h b/sdk/applications/wizard/ActionExtensionCreationState.h
index 19bdc25..d90e4cd 100644
--- a/sdk/applications/wizard/ActionExtensionCreationState.h
+++ b/sdk/applications/wizard/ActionExtensionCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
// Sub states
class ActionExtensionDescriptionWidget;
class ActionExtensionDescriptionState;
@@ -51,7 +51,10 @@ class ActionExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create an action extension. \n
+ *
+ * This state enables to create all states to generate one or more actions. \n
+ * It manages a sub-states dedicated to the creation of actions.
*
*/
class ActionExtensionCreationState : public QState {
@@ -59,7 +62,9 @@ class ActionExtensionCreationState : public QState {
Q_OBJECT;
public:
- ActionExtensionCreationState(QString name, DorothyMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Constructor */
+ ActionExtensionCreationState(QString name, WizardMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Destructor */
~ActionExtensionCreationState();
signals:
@@ -92,7 +97,7 @@ private:
ExtensionSummaryWidget * actionExtensionSummaryWidget;
ExtensionSummaryState * actionExtensionSummaryState;
- void createSubStates(DorothyMainWindow * mainWindow);
+ void createSubStates(WizardMainWindow * mainWindow);
QString name;
cepcoreschema::Cep * domCep;
diff --git a/sdk/applications/wizard/ActionExtensionDependenciesState.cpp b/sdk/applications/wizard/ActionExtensionDependenciesState.cpp
index 2cfdf69..a645bf8 100644
--- a/sdk/applications/wizard/ActionExtensionDependenciesState.cpp
+++ b/sdk/applications/wizard/ActionExtensionDependenciesState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ActionExtensionDependenciesState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionCreationState.h"
#include "DependenciesWidget.h"
@@ -34,14 +34,14 @@
#include <Actions.hxx>
#include <Action.hxx>
-/** Constructor */
-ActionExtensionDependenciesState::ActionExtensionDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent)
+
+ActionExtensionDependenciesState::ActionExtensionDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent)
: DependenciesState(name, widget, mainWindow, domCep, parent) {
this->domActionExtension = NULL;
widget->setElement("Action Extension");
}
-/** Destructor */
+
ActionExtensionDependenciesState::~ActionExtensionDependenciesState() {}
void ActionExtensionDependenciesState::resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension) {
diff --git a/sdk/applications/wizard/ActionExtensionDependenciesState.h b/sdk/applications/wizard/ActionExtensionDependenciesState.h
index 22b52f2..c7d9cbd 100644
--- a/sdk/applications/wizard/ActionExtensionDependenciesState.h
+++ b/sdk/applications/wizard/ActionExtensionDependenciesState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class ActionExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to define action extension dependencies
*
*/
class ActionExtensionDependenciesState : public DependenciesState {
@@ -47,8 +47,10 @@ class ActionExtensionDependenciesState : public DependenciesState {
Q_OBJECT;
public:
- ActionExtensionDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent);
+ /** Constructor */
+ ActionExtensionDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ActionExtensionCreationState * parent);
+ /** Destructor */
~ActionExtensionDependenciesState();
void resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension);
diff --git a/sdk/applications/wizard/ActionExtensionDescriptionState.cpp b/sdk/applications/wizard/ActionExtensionDescriptionState.cpp
index 5de9716..ad1516b 100644
--- a/sdk/applications/wizard/ActionExtensionDescriptionState.cpp
+++ b/sdk/applications/wizard/ActionExtensionDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,18 +26,18 @@
// Include .h file
#include "ActionExtensionDescriptionState.h"
#include "ActionExtensionDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionCreationState.h"
// includes from coreschema
#include <ActionExtension.hxx>
-/** Constructor */
-ActionExtensionDescriptionState::ActionExtensionDescriptionState(QString name, ActionExtensionDescriptionWidget * widget, DorothyMainWindow * mainWindow, ActionExtensionCreationState * parent)
+
+ActionExtensionDescriptionState::ActionExtensionDescriptionState(QString name, ActionExtensionDescriptionWidget * widget, WizardMainWindow * mainWindow, ActionExtensionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domActionExtension = NULL;
}
-/** Destructor */
+
ActionExtensionDescriptionState::~ActionExtensionDescriptionState() {}
void ActionExtensionDescriptionState::resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension) {
diff --git a/sdk/applications/wizard/ActionExtensionDescriptionState.h b/sdk/applications/wizard/ActionExtensionDescriptionState.h
index 4b0109d..9278713 100644
--- a/sdk/applications/wizard/ActionExtensionDescriptionState.h
+++ b/sdk/applications/wizard/ActionExtensionDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class ActionExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to enter the action extension description
*
*/
class ActionExtensionDescriptionState : public WizardState {
@@ -48,8 +48,10 @@ class ActionExtensionDescriptionState : public WizardState {
Q_OBJECT;
public:
- ActionExtensionDescriptionState(QString name, ActionExtensionDescriptionWidget * widget, DorothyMainWindow * mainWindow, ActionExtensionCreationState * parent);
+ /** Constructor */
+ ActionExtensionDescriptionState(QString name, ActionExtensionDescriptionWidget * widget, WizardMainWindow * mainWindow, ActionExtensionCreationState * parent);
+ /** Destructor */
~ActionExtensionDescriptionState();
void resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension);
diff --git a/sdk/applications/wizard/ActionExtensionDescriptionWidget.cpp b/sdk/applications/wizard/ActionExtensionDescriptionWidget.cpp
index 06c8b77..8d954eb 100644
--- a/sdk/applications/wizard/ActionExtensionDescriptionWidget.cpp
+++ b/sdk/applications/wizard/ActionExtensionDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,11 +31,11 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
ActionExtensionDescriptionWidget::ActionExtensionDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ActionExtensionDescriptionWidget::~ActionExtensionDescriptionWidget() {}
void ActionExtensionDescriptionWidget::cancelButtonClicked() {
@@ -46,7 +46,8 @@ void ActionExtensionDescriptionWidget::nextButtonClicked() {
QString actionExtensionName = ui.actionExtensionNameItself->text();
QString actionExtensionDescription = ui.actionExtensionDescriptionItself->toPlainText();
- if (actionExtensionName.toUtf8() != actionExtensionName.toAscii()) {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
+ if (actionExtensionName.toUtf8() != actionExtensionName.toLatin1()) {
ui.actionExtensionNameStar->setStyleSheet(enhancedStyle);
ui.actionExtensionDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -56,7 +57,7 @@ void ActionExtensionDescriptionWidget::nextButtonClicked() {
ui.actionExtensionDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealExtensionName);
- } else if (actionExtensionDescription.toUtf8() != actionExtensionDescription.toAscii()) {
+ } else if (actionExtensionDescription.toUtf8() != actionExtensionDescription.toLatin1()) {
ui.actionExtensionNameStar->setStyleSheet(normalStyle);
ui.actionExtensionDescriptionStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -72,6 +73,9 @@ void ActionExtensionDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(normalStyle);
emit next();
}
+#else
+ emit next();
+#endif
}
void ActionExtensionDescriptionWidget::setToDefault() {
diff --git a/sdk/applications/wizard/ActionExtensionDescriptionWidget.h b/sdk/applications/wizard/ActionExtensionDescriptionWidget.h
index ec98157..8cf4b21 100644
--- a/sdk/applications/wizard/ActionExtensionDescriptionWidget.h
+++ b/sdk/applications/wizard/ActionExtensionDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to enter the action extension description
*
*/
class ActionExtensionDescriptionWidget : public QWidget {
@@ -43,7 +43,9 @@ class ActionExtensionDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionExtensionDescriptionWidget(QWidget * parent);
+ /** Destructor */
~ActionExtensionDescriptionWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui b/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui
index ecf1a4a..88a5e5c 100644
--- a/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui
+++ b/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui
@@ -404,7 +404,7 @@
</font>
</property>
<property name="text">
- <string>Action Extension's Description</string>
+ <string>Description</string>
</property>
<property name="alignment">
<set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignTop</set>
@@ -543,7 +543,7 @@
</font>
</property>
<property name="text">
- <string> Action Extension's Name</string>
+ <string>Name</string>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/ActionParameterWidget.cpp b/sdk/applications/wizard/ActionParameterWidget.cpp
index 0a0ff61..9e7c449 100644
--- a/sdk/applications/wizard/ActionParameterWidget.cpp
+++ b/sdk/applications/wizard/ActionParameterWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -34,14 +34,14 @@
#include <ParameterGenerator.h>
-/** Constructor */
+
ActionParameterWidget::ActionParameterWidget(ActionAddParameterWidget * parent) : QWidget(parent) {
ui.setupUi(this);
this->parent = parent;
typeChanged(ui.typeComboBox->currentText());
}
-/** Destructor */
+
ActionParameterWidget::~ActionParameterWidget() {}
void ActionParameterWidget::remove() {
diff --git a/sdk/applications/wizard/ActionParameterWidget.h b/sdk/applications/wizard/ActionParameterWidget.h
index ebf13c0..9a44b9f 100644
--- a/sdk/applications/wizard/ActionParameterWidget.h
+++ b/sdk/applications/wizard/ActionParameterWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class ActionAddParameterWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to define an action parameter.
*
*/
class ActionParameterWidget : public QWidget {
@@ -47,7 +47,9 @@ class ActionParameterWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionParameterWidget(ActionAddParameterWidget * parent);
+ /** Destructor */
~ActionParameterWidget();
void setRequiredName();
diff --git a/sdk/applications/wizard/ActionSummaryState.cpp b/sdk/applications/wizard/ActionSummaryState.cpp
index f714225..dcb0c5c 100644
--- a/sdk/applications/wizard/ActionSummaryState.cpp
+++ b/sdk/applications/wizard/ActionSummaryState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#include "ActionSummaryState.h"
#include "ActionSummaryWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
// includes from coreschema
#include <Action.hxx>
@@ -35,7 +35,7 @@
#include <iostream>
ActionSummaryState::ActionSummaryState(QString name, ActionSummaryWidget * widget,
- DorothyMainWindow * mainWindow, QState * parent)
+ WizardMainWindow * mainWindow, QState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domAction = NULL;
}
diff --git a/sdk/applications/wizard/ActionSummaryState.h b/sdk/applications/wizard/ActionSummaryState.h
index 540c45c..5cc3a09 100644
--- a/sdk/applications/wizard/ActionSummaryState.h
+++ b/sdk/applications/wizard/ActionSummaryState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class Action;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to summarize the created action
*
*/
class ActionSummaryState : public WizardState {
@@ -47,8 +47,10 @@ class ActionSummaryState : public WizardState {
Q_OBJECT;
public:
- ActionSummaryState(QString name, ActionSummaryWidget * widget, DorothyMainWindow * mainWindow, QState * parent);
+ /** Constructor*/
+ ActionSummaryState(QString name, ActionSummaryWidget * widget, WizardMainWindow * mainWindow, QState * parent);
+ /** Destructor*/
~ActionSummaryState();
void resetAction(cepcoreschema::Action * domAction);
diff --git a/sdk/applications/wizard/ActionSummaryWidget.cpp b/sdk/applications/wizard/ActionSummaryWidget.cpp
index 7749a2e..69c5d5d 100644
--- a/sdk/applications/wizard/ActionSummaryWidget.cpp
+++ b/sdk/applications/wizard/ActionSummaryWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,11 +33,11 @@
#include <iostream>
-/** Constructor */
+
ActionSummaryWidget::ActionSummaryWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ActionSummaryWidget::~ActionSummaryWidget() {}
void ActionSummaryWidget::setToDefault() {
diff --git a/sdk/applications/wizard/ActionSummaryWidget.h b/sdk/applications/wizard/ActionSummaryWidget.h
index 8c64be9..46ffcf4 100644
--- a/sdk/applications/wizard/ActionSummaryWidget.h
+++ b/sdk/applications/wizard/ActionSummaryWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to summarize the created action
*
*/
class ActionSummaryWidget : public QWidget {
@@ -44,7 +44,9 @@ class ActionSummaryWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionSummaryWidget(QWidget * parent);
+ /** Destructor */
~ActionSummaryWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ActionSummaryWidget.ui b/sdk/applications/wizard/ActionSummaryWidget.ui
index 16ec64a..6452d03 100644
--- a/sdk/applications/wizard/ActionSummaryWidget.ui
+++ b/sdk/applications/wizard/ActionSummaryWidget.ui
@@ -512,7 +512,7 @@
<item>
<widget class="QLabel" name="actionSummaryLabel">
<property name="text">
- <string>Test</string>
+ <string/>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/ActionTagWidget.cpp b/sdk/applications/wizard/ActionTagWidget.cpp
index 08cd890..6290281 100644
--- a/sdk/applications/wizard/ActionTagWidget.cpp
+++ b/sdk/applications/wizard/ActionTagWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,13 +30,13 @@
#include "ActionClassificationWidget.h"
-/** Constructor */
+
ActionTagWidget::ActionTagWidget(ActionClassificationWidget * parent) : QWidget(parent) {
ui.setupUi(this);
this->parent = parent;
}
-/** Destructor */
+
ActionTagWidget::~ActionTagWidget() {}
void ActionTagWidget::remove() {
diff --git a/sdk/applications/wizard/ActionTagWidget.h b/sdk/applications/wizard/ActionTagWidget.h
index cf4afd6..f67ec03 100644
--- a/sdk/applications/wizard/ActionTagWidget.h
+++ b/sdk/applications/wizard/ActionTagWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class ActionClassificationWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to define tag to an action
*
*/
class ActionTagWidget : public QWidget {
@@ -47,7 +47,9 @@ class ActionTagWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionTagWidget(ActionClassificationWidget * parent);
+ /** Destructor */
~ActionTagWidget();
QString getTag();
diff --git a/sdk/applications/wizard/ActionsCreationState.cpp b/sdk/applications/wizard/ActionsCreationState.cpp
index 5c5d648..4b69499 100644
--- a/sdk/applications/wizard/ActionsCreationState.cpp
+++ b/sdk/applications/wizard/ActionsCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,20 +26,20 @@
// Include .h file
#include "ActionsCreationState.h"
#include "ActionsCreationWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionCreationState.h"
// includes from coreschema
#include <ActionExtension.hxx>
#include <Actions.hxx>
-/** Constructor */
-ActionsCreationState::ActionsCreationState(QString name, ActionsCreationWidget * widget, DorothyMainWindow * mainWindow, ActionExtensionCreationState * parent)
+
+ActionsCreationState::ActionsCreationState(QString name, ActionsCreationWidget * widget, WizardMainWindow * mainWindow, ActionExtensionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domActionExtension = NULL;
}
-/** Destructor */
+
ActionsCreationState::~ActionsCreationState() {}
void ActionsCreationState::resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension) {
diff --git a/sdk/applications/wizard/ActionsCreationState.h b/sdk/applications/wizard/ActionsCreationState.h
index 3d32420..d850e84 100644
--- a/sdk/applications/wizard/ActionsCreationState.h
+++ b/sdk/applications/wizard/ActionsCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class ActionExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create actions
*
*/
class ActionsCreationState : public WizardState {
@@ -48,8 +48,10 @@ class ActionsCreationState : public WizardState {
Q_OBJECT;
public:
- ActionsCreationState(QString name, ActionsCreationWidget * widget, DorothyMainWindow * mainWindow, ActionExtensionCreationState * parent);
+ /** Constructor */
+ ActionsCreationState(QString name, ActionsCreationWidget * widget, WizardMainWindow * mainWindow, ActionExtensionCreationState * parent);
+ /** Destructor */
~ActionsCreationState();
void resetDomActionExtension(cepcoreschema::ActionExtension * domActionExtension);
diff --git a/sdk/applications/wizard/ActionsCreationWidget.cpp b/sdk/applications/wizard/ActionsCreationWidget.cpp
index 29d0400..83d03c8 100644
--- a/sdk/applications/wizard/ActionsCreationWidget.cpp
+++ b/sdk/applications/wizard/ActionsCreationWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,11 +31,11 @@
#include <QMessageBox>
-/** Constructor */
+
ActionsCreationWidget::ActionsCreationWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ActionsCreationWidget::~ActionsCreationWidget() {}
void ActionsCreationWidget::setToDefault() {
@@ -46,6 +46,7 @@ void ActionsCreationWidget::setToDefault() {
void ActionsCreationWidget::nextButtonClicked() {
// check if at least an action has been created
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (createdActions.isEmpty()) {
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.label_Star->setStyleSheet(enhancedStyle);
@@ -55,6 +56,9 @@ void ActionsCreationWidget::nextButtonClicked() {
ui.label_Star->setStyleSheet(normalStyle);
emit next();
}
+#else
+ emit next();
+#endif
}
void ActionsCreationWidget::addActionClicked() {
diff --git a/sdk/applications/wizard/ActionsCreationWidget.h b/sdk/applications/wizard/ActionsCreationWidget.h
index 63704d2..2ead9b7 100644
--- a/sdk/applications/wizard/ActionsCreationWidget.h
+++ b/sdk/applications/wizard/ActionsCreationWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to create actions
*
*/
class ActionsCreationWidget : public QWidget {
@@ -44,7 +44,9 @@ class ActionsCreationWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ActionsCreationWidget(QWidget * parent);
+ /** Destructor */
~ActionsCreationWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/CMakeLists.txt b/sdk/applications/wizard/CMakeLists.txt
index e377ab9..ae33dc1 100644
--- a/sdk/applications/wizard/CMakeLists.txt
+++ b/sdk/applications/wizard/CMakeLists.txt
@@ -6,4 +6,10 @@ camitk_application(DEFAULT
ADDITIONAL_SOURCES CommandLineOptions.cxx CommandLineOptions.hxx CommandLineOptions.ixx
DESCRIPTION "Create CEP and file skeletons from GUI"
)
+set(CAMITK_WIZARD_DEBUG CACHE BOOL FALSE)
+
+# If this variable is true, then the wizard's user control is squeezed. To quickly test the application.
+if (CAMITK_WIZARD_DEBUG)
+ add_definitions(-D_WIZARD_QUESTIONS_SQUEEZE)
+endif (CAMITK_WIZARD_DEBUG)
diff --git a/sdk/applications/wizard/CepContactState.cpp b/sdk/applications/wizard/CepContactState.cpp
index 8bf2e05..c4a4a26 100644
--- a/sdk/applications/wizard/CepContactState.cpp
+++ b/sdk/applications/wizard/CepContactState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,17 +26,17 @@
// Include .h file
#include "CepContactState.h"
#include "CepContactWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include <Cep.hxx>
#include <Contact.hxx>
#include <Email.hxx>
-/** Constructor */
-CepContactState::CepContactState(QString name, CepContactWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep) : WizardState(name, widget, mainWindow) {
+
+CepContactState::CepContactState(QString name, CepContactWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep) : WizardState(name, widget, mainWindow) {
this->domCep = domCep;
}
-/** Destructor */
+
CepContactState::~CepContactState() {}
void CepContactState::onEntry(QEvent *event) {
@@ -63,7 +63,6 @@ void CepContactState::onExit ( QEvent * event ) {
// Licence
if (cepContactWidget->hasUserLicence()) {
- // xercesc::DOMDocument::createCDATASection(CepContactWidget->getUserLicence().toStdString());
domCep->copyright(cepContactWidget->getUserLicence().toStdString());
}
}
diff --git a/sdk/applications/wizard/CepContactState.h b/sdk/applications/wizard/CepContactState.h
index 60ca84a..2d86363 100644
--- a/sdk/applications/wizard/CepContactState.h
+++ b/sdk/applications/wizard/CepContactState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,7 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State of the contact of the creator of the CEP
*
*/
class CepContactState : public WizardState {
@@ -46,7 +46,9 @@ class CepContactState : public WizardState {
Q_OBJECT;
public:
- CepContactState(QString name, CepContactWidget * widget, DorothyMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Constructor */
+ CepContactState(QString name, CepContactWidget * widget, WizardMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Destructor */
~CepContactState();
protected:
diff --git a/sdk/applications/wizard/CepContactWidget.cpp b/sdk/applications/wizard/CepContactWidget.cpp
index 4d5271f..a85d19b 100644
--- a/sdk/applications/wizard/CepContactWidget.cpp
+++ b/sdk/applications/wizard/CepContactWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,7 @@
#include <iostream>
-/** Constructor */
+
CepContactWidget::CepContactWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
ui.cepContactLineEdit->setText(defaultContact);
@@ -42,16 +42,17 @@ CepContactWidget::CepContactWidget(QWidget * parent) : QWidget(parent) {
ui.userDefTextEdit->setVisible(false);
}
-/** Destructor */
+
CepContactWidget::~CepContactWidget() {}
void CepContactWidget::nextButtonClicked() {
QString contact = ui.cepContactLineEdit->text();
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (contact.isEmpty() || contact == defaultContact || !contact.contains("@")) {
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.cepContactStar->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealContact);
- } else if (contact.toUtf8() != contact.toAscii()) {
+ } else if (contact.toUtf8() != contact.toLatin1()) {
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.cepContactStar->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultAscii);
@@ -60,6 +61,9 @@ void CepContactWidget::nextButtonClicked() {
ui.cepContactStar->setStyleSheet(normalStyle);
emit next();
}
+#else
+ emit next();
+#endif
}
void CepContactWidget::previousButtonClicked() {
@@ -86,7 +90,6 @@ bool CepContactWidget::hasUserLicence() {
QString CepContactWidget::getUserLicence() {
QString userLicence = ui.userDefTextEdit->toPlainText();
- userLicence = " <![CDATA[ " + userLicence + " ]]> ";
std::cout << "licence: \n" << userLicence.toStdString() << std::endl;
return userLicence;
}
diff --git a/sdk/applications/wizard/CepContactWidget.h b/sdk/applications/wizard/CepContactWidget.h
index 7d75175..6ba5c8f 100644
--- a/sdk/applications/wizard/CepContactWidget.h
+++ b/sdk/applications/wizard/CepContactWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to enter contact of the creator of the CEP
*
*/
class CepContactWidget : public QWidget {
@@ -43,7 +43,9 @@ class CepContactWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
CepContactWidget(QWidget * parent);
+ /** Destructor */
~CepContactWidget();
void setCepName(QString cepName);
diff --git a/sdk/applications/wizard/CepCreateOrModifyWidget.cpp b/sdk/applications/wizard/CepCreateOrModifyWidget.cpp
index 3647fdc..891ca23 100644
--- a/sdk/applications/wizard/CepCreateOrModifyWidget.cpp
+++ b/sdk/applications/wizard/CepCreateOrModifyWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,12 +29,12 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
CepCreateOrModifyWidget::CepCreateOrModifyWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
ui.createRadioButton->setChecked(true);
}
-/** Destructor */
+
CepCreateOrModifyWidget::~CepCreateOrModifyWidget() {}
void CepCreateOrModifyWidget::nextButtonClicked() {
diff --git a/sdk/applications/wizard/CepCreateOrModifyWidget.h b/sdk/applications/wizard/CepCreateOrModifyWidget.h
index 996eb48..a768972 100644
--- a/sdk/applications/wizard/CepCreateOrModifyWidget.h
+++ b/sdk/applications/wizard/CepCreateOrModifyWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,18 +35,16 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to choose to modify an existing CEP or to create a new one.
*
*/
class CepCreateOrModifyWidget : public QWidget {
- /*! \class WelcomeWindow
- * Class linked with welcome interface which allows user to choose what he want to create ( action, component etc..)
- *
- */
Q_OBJECT;
public:
+ /** Constructor */
CepCreateOrModifyWidget(QWidget * parent);
+ /** Destructor */
~CepCreateOrModifyWidget();
public slots:
diff --git a/sdk/applications/wizard/CepCreateRecapState.cpp b/sdk/applications/wizard/CepCreateRecapState.cpp
index 277f0c4..cda5a0f 100644
--- a/sdk/applications/wizard/CepCreateRecapState.cpp
+++ b/sdk/applications/wizard/CepCreateRecapState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "CepCreateRecapState.h"
#include "CepCreateRecapWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
// includes from coreschema
#include <Cep.hxx>
@@ -37,12 +37,12 @@
// temporary include
#include <iostream>
-/** Constructor */
-CepCreateRecapState::CepCreateRecapState(QString name, CepCreateRecapWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep)
+
+CepCreateRecapState::CepCreateRecapState(QString name, CepCreateRecapWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep)
: WizardState(name, widget, mainWindow) {
this->domCep = domCep;
}
-/** Destructor */
+
CepCreateRecapState::~CepCreateRecapState() {}
diff --git a/sdk/applications/wizard/CepCreateRecapState.h b/sdk/applications/wizard/CepCreateRecapState.h
index 4c9d0cd..f6c1d37 100644
--- a/sdk/applications/wizard/CepCreateRecapState.h
+++ b/sdk/applications/wizard/CepCreateRecapState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to summarize the creation of the CEP
*
*/
class CepCreateRecapState : public WizardState {
@@ -47,7 +47,9 @@ class CepCreateRecapState : public WizardState {
Q_OBJECT;
public:
- CepCreateRecapState(QString name, CepCreateRecapWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep);
+ /** Constructor */
+ CepCreateRecapState(QString name, CepCreateRecapWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep);
+ /** Destructor */
~CepCreateRecapState();
protected:
diff --git a/sdk/applications/wizard/CepCreateRecapWidget.cpp b/sdk/applications/wizard/CepCreateRecapWidget.cpp
index 6c7801f..f82372e 100644
--- a/sdk/applications/wizard/CepCreateRecapWidget.cpp
+++ b/sdk/applications/wizard/CepCreateRecapWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -60,14 +60,14 @@ static const QString defaultExistingLibraries = "\
</body>\
</html>";
-/** Constructor */
+
CepCreateRecapWidget::CepCreateRecapWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
createdLibrariesString = defaultExistingLibraries;
createdActionsString = defaultExistingActionExtensions;
createdComponentsString = defaultExistingComponentExtensions;
}
-/** Destructor */
+
CepCreateRecapWidget::~CepCreateRecapWidget() {}
void CepCreateRecapWidget::nextButtonClicked() {
diff --git a/sdk/applications/wizard/CepCreateRecapWidget.h b/sdk/applications/wizard/CepCreateRecapWidget.h
index 70035ce..5fbebc9 100644
--- a/sdk/applications/wizard/CepCreateRecapWidget.h
+++ b/sdk/applications/wizard/CepCreateRecapWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to summarize the creation of the CEP
*
*/
class CepCreateRecapWidget : public QWidget {
@@ -43,7 +43,9 @@ class CepCreateRecapWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
CepCreateRecapWidget(QWidget * parent);
+ /** Destructor */
~CepCreateRecapWidget();
void setNameItself(QString name);
diff --git a/sdk/applications/wizard/CepCreateRecapWidget.ui b/sdk/applications/wizard/CepCreateRecapWidget.ui
index 45faa62..ff310b4 100644
--- a/sdk/applications/wizard/CepCreateRecapWidget.ui
+++ b/sdk/applications/wizard/CepCreateRecapWidget.ui
@@ -79,7 +79,7 @@
<item row="1" column="1">
<widget class="QLabel" name="cepNameItself">
<property name="text">
- <string>TextLabel</string>
+ <string/>
</property>
</widget>
</item>
@@ -102,7 +102,7 @@
<item row="3" column="1">
<widget class="QLabel" name="cepContactItself">
<property name="text">
- <string>TextLabel</string>
+ <string/>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/CepCreationDirectoryState.cpp b/sdk/applications/wizard/CepCreationDirectoryState.cpp
index 35400e1..c479c1f 100644
--- a/sdk/applications/wizard/CepCreationDirectoryState.cpp
+++ b/sdk/applications/wizard/CepCreationDirectoryState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,12 +29,12 @@
#include <iostream>
-/** Constructor */
-CepCreationDirectoryState::CepCreationDirectoryState(QString name, CepCreationDirectoryWidget * widget, DorothyMainWindow * mainWindow, QString * devDirName) :
+
+CepCreationDirectoryState::CepCreationDirectoryState(QString name, CepCreationDirectoryWidget * widget, WizardMainWindow * mainWindow, QString * devDirName) :
WizardState(name, widget, mainWindow) {
this->devDirName = devDirName;
}
-/** Destructor */
+
CepCreationDirectoryState::~CepCreationDirectoryState() {}
diff --git a/sdk/applications/wizard/CepCreationDirectoryState.h b/sdk/applications/wizard/CepCreationDirectoryState.h
index b97b1cc..05febe1 100644
--- a/sdk/applications/wizard/CepCreationDirectoryState.h
+++ b/sdk/applications/wizard/CepCreationDirectoryState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,7 @@ class CepCreationDirectoryWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to define the directory of the CEP.
*
*/
class CepCreationDirectoryState : public WizardState {
@@ -41,7 +41,9 @@ class CepCreationDirectoryState : public WizardState {
Q_OBJECT;
public:
- CepCreationDirectoryState(QString name, CepCreationDirectoryWidget * widget, DorothyMainWindow * mainWidnow, QString * devDirName);
+ /** Constructor */
+ CepCreationDirectoryState(QString name, CepCreationDirectoryWidget * widget, WizardMainWindow * mainWidnow, QString * devDirName);
+ /** Destructor */
~CepCreationDirectoryState();
protected:
diff --git a/sdk/applications/wizard/CepCreationDirectoryWidget.cpp b/sdk/applications/wizard/CepCreationDirectoryWidget.cpp
index 8018796..80d4e28 100644
--- a/sdk/applications/wizard/CepCreationDirectoryWidget.cpp
+++ b/sdk/applications/wizard/CepCreationDirectoryWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,11 +30,11 @@
#include <QMessageBox>
#include <QFileDialog>
-/** Constructor */
+
CepCreationDirectoryWidget::CepCreationDirectoryWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
CepCreationDirectoryWidget::~CepCreationDirectoryWidget() {}
void CepCreationDirectoryWidget::nextButtonClicked() {
@@ -42,16 +42,23 @@ void CepCreationDirectoryWidget::nextButtonClicked() {
QString enteredDir = ui.inputDirectoryLineEdit->text();
QFileInfo devDir(enteredDir);
// Message if the field is empty (no development directory)
+
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if ((enteredDir == "") || (!devDir.isDir())) {
+
ui.selectLabel->setStyleSheet("QLabel { background-color : red; color : yellow; }");
ui.requiredLabel->setStyleSheet("QLabel { background-color : red; color : yellow; }");
int ret = QMessageBox::warning(this, tr("Before going further..."), tr("Please select a valid development directory\n"));
+
} else {
ui.selectLabel->setStyleSheet("QLabel { background-color : none; color : black; }");
ui.requiredLabel->setStyleSheet("QLabel { background-color : none; color : black; }");
emit next();
}
+#else
+ emit next();
+#endif
}
diff --git a/sdk/applications/wizard/CepCreationDirectoryWidget.h b/sdk/applications/wizard/CepCreationDirectoryWidget.h
index c55b60d..b327d4a 100644
--- a/sdk/applications/wizard/CepCreationDirectoryWidget.h
+++ b/sdk/applications/wizard/CepCreationDirectoryWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to define the directory of the CEP.
*
*/
class CepCreationDirectoryWidget : public QWidget {
@@ -43,7 +43,9 @@ class CepCreationDirectoryWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
CepCreationDirectoryWidget(QWidget * parent);
+ /** Destructor */
~CepCreationDirectoryWidget();
QString getDirectoryName();
diff --git a/sdk/applications/wizard/CepDescriptionState.cpp b/sdk/applications/wizard/CepDescriptionState.cpp
index 60d8d59..049d9a5 100644
--- a/sdk/applications/wizard/CepDescriptionState.cpp
+++ b/sdk/applications/wizard/CepDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,17 +26,17 @@
// Include .h file
#include "CepDescriptionState.h"
#include "CepDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
// includes from coreschema
#include <Cep.hxx>
-/** Constructor */
-CepDescriptionState::CepDescriptionState(QString name, CepDescriptionWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep)
+
+CepDescriptionState::CepDescriptionState(QString name, CepDescriptionWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep)
: WizardState(name, widget, mainWindow) {
this->domCep = domCep;
}
-/** Destructor */
+
CepDescriptionState::~CepDescriptionState() {}
void CepDescriptionState::onExit( QEvent * event ) {
diff --git a/sdk/applications/wizard/CepDescriptionState.h b/sdk/applications/wizard/CepDescriptionState.h
index 5fbe750..c15a6bd 100644
--- a/sdk/applications/wizard/CepDescriptionState.h
+++ b/sdk/applications/wizard/CepDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,7 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * CEP description state
*
*/
class CepDescriptionState : public WizardState {
@@ -46,7 +46,9 @@ class CepDescriptionState : public WizardState {
Q_OBJECT;
public:
- CepDescriptionState(QString name, CepDescriptionWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep);
+ /** Constructor */
+ CepDescriptionState(QString name, CepDescriptionWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep);
+ /** Destructor */
~CepDescriptionState();
protected:
diff --git a/sdk/applications/wizard/CepDescriptionWidget.cpp b/sdk/applications/wizard/CepDescriptionWidget.cpp
index f75c4f5..53f7755 100644
--- a/sdk/applications/wizard/CepDescriptionWidget.cpp
+++ b/sdk/applications/wizard/CepDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,27 +33,27 @@
-/** Constructor */
+
CepDescriptionWidget::CepDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
ui.cepNameLineEdit->setText(defaultCepName);
ui.cepDescriptionTextEdit->setHtml(defaultCepDescription);
}
-/** Destructor */
CepDescriptionWidget::~CepDescriptionWidget() {}
void CepDescriptionWidget::nextButtonClicked() {
QString cepName = ui.cepNameLineEdit->text();
QString cepDescription = ui.cepDescriptionTextEdit->toPlainText();
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (cepName.isEmpty() ||cepName == defaultCepName) {
ui.cepDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.cepNameStar->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealCepName);
- } else if (cepName.toUtf8() != cepName.toAscii()) {
+ } else if (cepName.toUtf8() != cepName.toLatin1()) {
ui.cepDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.cepNameStar->setStyleSheet(enhancedStyle);
@@ -65,7 +65,7 @@ void CepDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealCepDescription);
- } else if (cepDescription.toUtf8() != cepDescription.toAscii()) {
+ } else if (cepDescription.toUtf8() != cepDescription.toLatin1()) {
ui.cepNameStar->setStyleSheet(normalStyle);
ui.cepDescriptionStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -77,6 +77,9 @@ void CepDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(normalStyle);
emit next();
}
+#else
+ emit next();
+#endif
}
diff --git a/sdk/applications/wizard/CepDescriptionWidget.h b/sdk/applications/wizard/CepDescriptionWidget.h
index 9422ad0..08e78ed 100644
--- a/sdk/applications/wizard/CepDescriptionWidget.h
+++ b/sdk/applications/wizard/CepDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to describe the CEP
*
*/
class CepDescriptionWidget : public QWidget {
@@ -43,7 +43,10 @@ class CepDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
CepDescriptionWidget(QWidget * parent);
+
+ /** Destructor */
~CepDescriptionWidget();
QString getCepName();
diff --git a/sdk/applications/wizard/ComponentAddPropertyState.cpp b/sdk/applications/wizard/ComponentAddPropertyState.cpp
index b45e038..07f5bc9 100644
--- a/sdk/applications/wizard/ComponentAddPropertyState.cpp
+++ b/sdk/applications/wizard/ComponentAddPropertyState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#include "ComponentAddPropertyState.h"
#include "ComponentAddPropertyWidget.h"
#include "ComponentPropertyWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentCreationState.h"
// includes from coreschema
@@ -36,12 +36,12 @@
#include <Parameter.hxx>
-/** Constructor */
-ComponentAddPropertyState::ComponentAddPropertyState(QString name, ComponentAddPropertyWidget * widget, DorothyMainWindow * mainWindow, ComponentCreationState * parent)
+
+ComponentAddPropertyState::ComponentAddPropertyState(QString name, ComponentAddPropertyWidget * widget, WizardMainWindow * mainWindow, ComponentCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domComponent = NULL;
}
-/** Destructor */
+
ComponentAddPropertyState::~ComponentAddPropertyState() {}
void ComponentAddPropertyState::resetDomComponent(cepcoreschema::Component * domComponent) {
diff --git a/sdk/applications/wizard/ComponentAddPropertyState.h b/sdk/applications/wizard/ComponentAddPropertyState.h
index 0f3793d..44b0749 100644
--- a/sdk/applications/wizard/ComponentAddPropertyState.h
+++ b/sdk/applications/wizard/ComponentAddPropertyState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,7 +43,7 @@ class Component;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to add a property to a component
*
*/
class ComponentAddPropertyState : public WizardState {
@@ -51,7 +51,9 @@ class ComponentAddPropertyState : public WizardState {
Q_OBJECT;
public:
- ComponentAddPropertyState(QString name, ComponentAddPropertyWidget * widget, DorothyMainWindow * mainWindow, ComponentCreationState * parent);
+ /** Constructor */
+ ComponentAddPropertyState(QString name, ComponentAddPropertyWidget * widget, WizardMainWindow * mainWindow, ComponentCreationState * parent);
+ /** Destructor */
~ComponentAddPropertyState();
void resetDomComponent(cepcoreschema::Component * domComponent);
diff --git a/sdk/applications/wizard/ComponentAddPropertyWidget.cpp b/sdk/applications/wizard/ComponentAddPropertyWidget.cpp
index bb7eb33..f3d6c16 100644
--- a/sdk/applications/wizard/ComponentAddPropertyWidget.cpp
+++ b/sdk/applications/wizard/ComponentAddPropertyWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,17 +39,18 @@
#include <sstream>
-/** Constructor */
+
ComponentAddPropertyWidget::ComponentAddPropertyWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault();
}
-/** Destructor */
+
ComponentAddPropertyWidget::~ComponentAddPropertyWidget() {
}
void ComponentAddPropertyWidget::nextButtonClicked() {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (isOneNonAsciiParameter()) {
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultAscii);
} else if (isOneNoName()) {
@@ -57,6 +58,9 @@ void ComponentAddPropertyWidget::nextButtonClicked() {
} else {
emit next();
}
+#else
+ emit next();
+#endif
}
void ComponentAddPropertyWidget::previousButtonClicked() {
@@ -93,10 +97,10 @@ bool ComponentAddPropertyWidget::isOneNonAsciiParameter() {
QString paramDescription = (*it)->getDescription();
QString paramDefaultValue = (*it)->getDefaultValue();
- if ((paramName.toUtf8() != paramName.toAscii()) ||
- (paramType.toUtf8() != paramType.toAscii()) ||
- (paramDescription.toUtf8() != paramDescription.toAscii()) ||
- (paramDefaultValue.toUtf8() != paramDefaultValue.toAscii())) {
+ if ((paramName.toUtf8() != paramName.toLatin1()) ||
+ (paramType.toUtf8() != paramType.toLatin1()) ||
+ (paramDescription.toUtf8() != paramDescription.toLatin1()) ||
+ (paramDefaultValue.toUtf8() != paramDefaultValue.toLatin1())) {
oneNonAscii = true;
}
it++;
diff --git a/sdk/applications/wizard/ComponentAddPropertyWidget.h b/sdk/applications/wizard/ComponentAddPropertyWidget.h
index 4dcf150..e0f8020 100644
--- a/sdk/applications/wizard/ComponentAddPropertyWidget.h
+++ b/sdk/applications/wizard/ComponentAddPropertyWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,7 +38,9 @@ class ComponentPropertyWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to add or remove properties to the component
+ *
+ * The widget manages a list of ComponentPropertyWidget to define each property.
*
*/
class ComponentAddPropertyWidget : public QWidget {
@@ -46,7 +48,9 @@ class ComponentAddPropertyWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ComponentAddPropertyWidget(QWidget * parent);
+ /** Destructor */
~ComponentAddPropertyWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ComponentAddPropertyWidget.ui b/sdk/applications/wizard/ComponentAddPropertyWidget.ui
index 67d2341..99533c9 100644
--- a/sdk/applications/wizard/ComponentAddPropertyWidget.ui
+++ b/sdk/applications/wizard/ComponentAddPropertyWidget.ui
@@ -620,8 +620,8 @@
<rect>
<x>0</x>
<y>0</y>
- <width>938</width>
- <height>189</height>
+ <width>932</width>
+ <height>384</height>
</rect>
</property>
<layout class="QVBoxLayout" name="verticalLayout_2">
@@ -660,19 +660,6 @@
</layout>
</item>
<item>
- <spacer name="verticalSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
<layout class="QHBoxLayout" name="horizontalLayout_5">
<item>
<widget class="QPushButton" name="previousPushButton">
diff --git a/sdk/applications/wizard/ComponentCreationState.cpp b/sdk/applications/wizard/ComponentCreationState.cpp
index d432f3e..fbc9a96 100644
--- a/sdk/applications/wizard/ComponentCreationState.cpp
+++ b/sdk/applications/wizard/ComponentCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ComponentCreationState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentExtensionCreationState.h"
#include "ComponentDescriptionWidget.h"
@@ -42,7 +42,7 @@
#include <iostream>
/** Constructor */
-ComponentCreationState::ComponentCreationState(QString name, DorothyMainWindow * mainWindow, ComponentExtensionCreationState * parent)
+ComponentCreationState::ComponentCreationState(QString name, WizardMainWindow * mainWindow, ComponentExtensionCreationState * parent)
: QState(parent) {
this->name = name;
this->cancelled = false;
@@ -98,7 +98,7 @@ void ComponentCreationState::componentCancelled() {
emit nextCCS();
}
-void ComponentCreationState::createSubStates(DorothyMainWindow * mainWindow) {
+void ComponentCreationState::createSubStates(WizardMainWindow * mainWindow) {
componentDescriptionWidget = new ComponentDescriptionWidget(NULL);
componentDescriptionState = new ComponentDescriptionState("Component Description",componentDescriptionWidget, mainWindow, this);
diff --git a/sdk/applications/wizard/ComponentCreationState.h b/sdk/applications/wizard/ComponentCreationState.h
index 0e5ef1c..a2363f5 100644
--- a/sdk/applications/wizard/ComponentCreationState.h
+++ b/sdk/applications/wizard/ComponentCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
class ComponentExtensionCreationState;
// Sub-States
@@ -50,7 +50,9 @@ class Component;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create one component
+ *
+ * This state manages sub-state to create one component.
*
*/
class ComponentCreationState : public QState {
@@ -58,7 +60,9 @@ class ComponentCreationState : public QState {
Q_OBJECT;
public:
- ComponentCreationState(QString name, DorothyMainWindow * mainWidnow, ComponentExtensionCreationState * parent);
+ /** Constructor */
+ ComponentCreationState(QString name, WizardMainWindow * mainWidnow, ComponentExtensionCreationState * parent);
+ /** Destructor */
~ComponentCreationState();
void resetDomComponentExtension(cepcoreschema::ComponentExtension * domComponentExtension);
@@ -87,7 +91,7 @@ protected:
ComponentSummaryState * componentSummaryState;
private:
- void createSubStates(DorothyMainWindow * mainWindow);
+ void createSubStates(WizardMainWindow * mainWindow);
bool cancelled;
QString name;
diff --git a/sdk/applications/wizard/ComponentDescriptionState.cpp b/sdk/applications/wizard/ComponentDescriptionState.cpp
index f961191..bdc8e45 100644
--- a/sdk/applications/wizard/ComponentDescriptionState.cpp
+++ b/sdk/applications/wizard/ComponentDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "ComponentDescriptionState.h"
#include "ComponentDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentCreationState.h"
// includes from coreschema
@@ -36,14 +36,13 @@
// temporary
#include <iostream>
-/** Constructor */
-ComponentDescriptionState::ComponentDescriptionState(QString name, ComponentDescriptionWidget * widget, DorothyMainWindow * mainWindow, ComponentCreationState * parent)
+ComponentDescriptionState::ComponentDescriptionState(QString name, ComponentDescriptionWidget * widget, WizardMainWindow * mainWindow, ComponentCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domComponent = NULL;
this->domComponentExtension = NULL;
}
-/** Destructor */
+
ComponentDescriptionState::~ComponentDescriptionState() {}
void ComponentDescriptionState::resetDomComponent(cepcoreschema::Component *domComponent, cepcoreschema::ComponentExtension *domComponentExtension) {
diff --git a/sdk/applications/wizard/ComponentDescriptionState.h b/sdk/applications/wizard/ComponentDescriptionState.h
index a585a5c..44b071d 100644
--- a/sdk/applications/wizard/ComponentDescriptionState.h
+++ b/sdk/applications/wizard/ComponentDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -41,7 +41,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to describe component
*
*/
class ComponentDescriptionState : public WizardState {
@@ -49,8 +49,11 @@ class ComponentDescriptionState : public WizardState {
Q_OBJECT;
public:
- ComponentDescriptionState(QString name, ComponentDescriptionWidget * widget, DorothyMainWindow * mainWindow, ComponentCreationState * parent);
+ /** Constructor */
+ ComponentDescriptionState(QString name, ComponentDescriptionWidget * widget, WizardMainWindow * mainWindow, ComponentCreationState * parent);
+
+ /** Destructor */
~ComponentDescriptionState();
void resetDomComponent(cepcoreschema::Component * domComponent, cepcoreschema::ComponentExtension * domComponentExtension);
diff --git a/sdk/applications/wizard/ComponentDescriptionWidget.cpp b/sdk/applications/wizard/ComponentDescriptionWidget.cpp
index 167f854..091b670 100644
--- a/sdk/applications/wizard/ComponentDescriptionWidget.cpp
+++ b/sdk/applications/wizard/ComponentDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,13 +31,12 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
ComponentDescriptionWidget::ComponentDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault(defaultComponentExtensionName);
}
-/** Destructor */
+
ComponentDescriptionWidget::~ComponentDescriptionWidget() {}
@@ -46,6 +45,8 @@ void ComponentDescriptionWidget::nextButtonClicked() {
QString componentDescription = ui.componentDescriptionItself->toPlainText();
QString fileSuffix = ui.suffixItself->text();
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
+
if (componentName == componentExtensionName) {
ui.componentNameStar->setStyleSheet(enhancedStyle);
ui.componentDescriptionStar->setStyleSheet(normalStyle);
@@ -53,7 +54,7 @@ void ComponentDescriptionWidget::nextButtonClicked() {
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultComponentNameAndExtension);
- } else if (componentName.toUtf8() != componentName.toAscii()) {
+ } else if (componentName.toUtf8() != componentName.toLatin1()) {
ui.componentNameStar->setStyleSheet(enhancedStyle);
ui.componentDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -65,7 +66,7 @@ void ComponentDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealComponentName);
- } else if (componentDescription.toUtf8() != componentDescription.toAscii()) {
+ } else if (componentDescription.toUtf8() != componentDescription.toLatin1()) {
ui.componentNameStar->setStyleSheet(normalStyle);
ui.componentDescriptionStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -77,7 +78,7 @@ void ComponentDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealComponentDescription);
- } else if (fileSuffix.toUtf8() != fileSuffix.toAscii()) {
+ } else if (fileSuffix.toUtf8() != fileSuffix.toLatin1()) {
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.componentNameStar->setStyleSheet(normalStyle);
ui.componentDescriptionStar->setStyleSheet(normalStyle);
@@ -95,6 +96,9 @@ void ComponentDescriptionWidget::nextButtonClicked() {
else {
emit next();
}
+#else
+ emit next();
+#endif
}
void ComponentDescriptionWidget::cancelButtonClicked() {
diff --git a/sdk/applications/wizard/ComponentDescriptionWidget.h b/sdk/applications/wizard/ComponentDescriptionWidget.h
index b3c9885..4df6b6a 100644
--- a/sdk/applications/wizard/ComponentDescriptionWidget.h
+++ b/sdk/applications/wizard/ComponentDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to describe component
*
*/
class ComponentDescriptionWidget : public QWidget {
@@ -43,7 +43,11 @@ class ComponentDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+
+ /** Constructor */
ComponentDescriptionWidget(QWidget * parent);
+
+ /** Destructor */
~ComponentDescriptionWidget();
void setToDefault(QString componentExtensionName);
diff --git a/sdk/applications/wizard/ComponentExtensionCreationState.cpp b/sdk/applications/wizard/ComponentExtensionCreationState.cpp
index 8c8045c..d8a33f8 100644
--- a/sdk/applications/wizard/ComponentExtensionCreationState.cpp
+++ b/sdk/applications/wizard/ComponentExtensionCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ComponentExtensionCreationState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentExtensionDescriptionWidget.h"
#include "ComponentExtensionDescriptionState.h"
@@ -44,8 +44,8 @@
#include <QMessageBox>
#include <iostream>
-/** Constructor */
-ComponentExtensionCreationState::ComponentExtensionCreationState(QString name, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep) : QState() {
+
+ComponentExtensionCreationState::ComponentExtensionCreationState(QString name, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep) : QState() {
this->cancelled = false;
this->name = name;
this->domCep = domCep;
@@ -55,7 +55,7 @@ ComponentExtensionCreationState::ComponentExtensionCreationState(QString name, D
}
-/** Destructor */
+
ComponentExtensionCreationState::~ComponentExtensionCreationState() {}
@@ -109,7 +109,7 @@ void ComponentExtensionCreationState::extensionCancelled() {
}
-void ComponentExtensionCreationState::createSubStates(DorothyMainWindow * mainWindow) {
+void ComponentExtensionCreationState::createSubStates(WizardMainWindow * mainWindow) {
componentExtensionDescriptionWidget = new ComponentExtensionDescriptionWidget(NULL);
componentExtensionDescriptionState = new ComponentExtensionDescriptionState("Component Extension", componentExtensionDescriptionWidget, mainWindow, this);
diff --git a/sdk/applications/wizard/ComponentExtensionCreationState.h b/sdk/applications/wizard/ComponentExtensionCreationState.h
index ec0428c..be45a65 100644
--- a/sdk/applications/wizard/ComponentExtensionCreationState.h
+++ b/sdk/applications/wizard/ComponentExtensionCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
// Sub States
class ComponentExtensionDescriptionWidget;
class ComponentExtensionDescriptionState;
@@ -51,7 +51,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create component extension.
*
*/
class ComponentExtensionCreationState : public QState {
@@ -59,7 +59,9 @@ class ComponentExtensionCreationState : public QState {
Q_OBJECT;
public:
- ComponentExtensionCreationState(QString name, DorothyMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Constructor */
+ ComponentExtensionCreationState(QString name, WizardMainWindow * mainWidnow, cepcoreschema::Cep * domCep);
+ /** Destructor */
~ComponentExtensionCreationState();
signals:
@@ -93,7 +95,7 @@ private:
ExtensionSummaryState * componentExtensionSummaryState;
- void createSubStates(DorothyMainWindow * mainWindow);
+ void createSubStates(WizardMainWindow * mainWindow);
QString name;
cepcoreschema::Cep * domCep;
diff --git a/sdk/applications/wizard/ComponentExtensionDependenciesState.cpp b/sdk/applications/wizard/ComponentExtensionDependenciesState.cpp
index 4a3d8ea..5c0f62b 100644
--- a/sdk/applications/wizard/ComponentExtensionDependenciesState.cpp
+++ b/sdk/applications/wizard/ComponentExtensionDependenciesState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "ComponentExtensionDependenciesState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentExtensionCreationState.h"
#include "DependenciesWidget.h"
@@ -34,14 +34,14 @@
#include <Components.hxx>
#include <Component.hxx>
-/** Constructor */
-ComponentExtensionDependenciesState::ComponentExtensionDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ComponentExtensionCreationState * parent)
+
+ComponentExtensionDependenciesState::ComponentExtensionDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ComponentExtensionCreationState * parent)
: DependenciesState(name, widget, mainWindow, domCep, parent) {
this->domComponentExtension = NULL;
widget->setElement("Component Extension");
}
-/** Destructor */
+
ComponentExtensionDependenciesState::~ComponentExtensionDependenciesState() {}
void ComponentExtensionDependenciesState::resetDomComponentExtension(cepcoreschema::ComponentExtension *domComponentExtension) {
diff --git a/sdk/applications/wizard/ComponentExtensionDependenciesState.h b/sdk/applications/wizard/ComponentExtensionDependenciesState.h
index 3a686ef..d8419d1 100644
--- a/sdk/applications/wizard/ComponentExtensionDependenciesState.h
+++ b/sdk/applications/wizard/ComponentExtensionDependenciesState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to define dependencies to the component extension
*
*/
class ComponentExtensionDependenciesState : public DependenciesState {
@@ -47,8 +47,10 @@ class ComponentExtensionDependenciesState : public DependenciesState {
Q_OBJECT;
public:
- ComponentExtensionDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, ComponentExtensionCreationState * parent);
+ /** Constructor */
+ ComponentExtensionDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, ComponentExtensionCreationState * parent);
+ /** Destructor */
~ComponentExtensionDependenciesState();
void resetDomComponentExtension(cepcoreschema::ComponentExtension * domComponentExtension);
diff --git a/sdk/applications/wizard/ComponentExtensionDescriptionState.cpp b/sdk/applications/wizard/ComponentExtensionDescriptionState.cpp
index e559282..284ea0b 100644
--- a/sdk/applications/wizard/ComponentExtensionDescriptionState.cpp
+++ b/sdk/applications/wizard/ComponentExtensionDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,18 +26,18 @@
// Include .h file
#include "ComponentExtensionDescriptionState.h"
#include "ComponentExtensionDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentExtensionCreationState.h"
// includes from coreschema
#include <ComponentExtension.hxx>
-/** Constructor */
-ComponentExtensionDescriptionState::ComponentExtensionDescriptionState(QString name, ComponentExtensionDescriptionWidget * widget, DorothyMainWindow * mainWindow, ComponentExtensionCreationState * parent)
+
+ComponentExtensionDescriptionState::ComponentExtensionDescriptionState(QString name, ComponentExtensionDescriptionWidget * widget, WizardMainWindow * mainWindow, ComponentExtensionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domComponentExtension = NULL;
}
-/** Destructor */
+
ComponentExtensionDescriptionState::~ComponentExtensionDescriptionState() {}
void ComponentExtensionDescriptionState::resetDomComponentExtension(cepcoreschema::ComponentExtension * domComponentExtension) {
diff --git a/sdk/applications/wizard/ComponentExtensionDescriptionState.h b/sdk/applications/wizard/ComponentExtensionDescriptionState.h
index ded25e4..cbc7d5c 100644
--- a/sdk/applications/wizard/ComponentExtensionDescriptionState.h
+++ b/sdk/applications/wizard/ComponentExtensionDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to describe component extension
*
*/
class ComponentExtensionDescriptionState : public WizardState {
@@ -48,8 +48,10 @@ class ComponentExtensionDescriptionState : public WizardState {
Q_OBJECT;
public:
- ComponentExtensionDescriptionState(QString name, ComponentExtensionDescriptionWidget * widget, DorothyMainWindow * mainWindow, ComponentExtensionCreationState * parent);
+ /** Constructor */
+ ComponentExtensionDescriptionState(QString name, ComponentExtensionDescriptionWidget * widget, WizardMainWindow * mainWindow, ComponentExtensionCreationState * parent);
+ /** Destructor */
~ComponentExtensionDescriptionState();
void resetDomComponentExtension(cepcoreschema::ComponentExtension * domComponentExtension);
diff --git a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.cpp b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.cpp
index fc1bdf3..77e9c3d 100644
--- a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.cpp
+++ b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,11 +31,11 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
ComponentExtensionDescriptionWidget::ComponentExtensionDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ComponentExtensionDescriptionWidget::~ComponentExtensionDescriptionWidget() {}
void ComponentExtensionDescriptionWidget::setToDefault() {
@@ -55,7 +55,8 @@ void ComponentExtensionDescriptionWidget::nextButtonClicked() {
QString componentExtensionName = ui.componentExtensionNameItself->text();
QString componentExtensionDescription = ui.componentExtensionDescriptionItself->toPlainText();
- if (componentExtensionName.toUtf8() != componentExtensionName.toAscii()) {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
+ if (componentExtensionName.toUtf8() != componentExtensionName.toLatin1()) {
ui.componentExtensionNameStar->setStyleSheet(enhancedStyle);
ui.componentExtensionDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -65,7 +66,7 @@ void ComponentExtensionDescriptionWidget::nextButtonClicked() {
ui.componentExtensionDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealExtensionName);
- } else if (componentExtensionDescription.toUtf8() != componentExtensionDescription.toAscii()) {
+ } else if (componentExtensionDescription.toUtf8() != componentExtensionDescription.toLatin1()) {
ui.componentExtensionNameStar->setStyleSheet(normalStyle);
ui.componentExtensionDescriptionStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(normalStyle);
@@ -86,6 +87,9 @@ void ComponentExtensionDescriptionWidget::nextButtonClicked() {
emit next();
}
+#else
+ emit next();
+#endif
}
diff --git a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.h b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.h
index 47f5438..0f5fb44 100644
--- a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.h
+++ b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to describe component extension
*
*/
class ComponentExtensionDescriptionWidget : public QWidget {
@@ -43,7 +43,9 @@ class ComponentExtensionDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ComponentExtensionDescriptionWidget(QWidget * parent);
+ /** Destructor */
~ComponentExtensionDescriptionWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.ui b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.ui
index 61f99fe..1d49734 100644
--- a/sdk/applications/wizard/ComponentExtensionDescriptionWidget.ui
+++ b/sdk/applications/wizard/ComponentExtensionDescriptionWidget.ui
@@ -301,6 +301,19 @@
</layout>
</item>
<item>
+ <spacer name="verticalSpacer_5">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<layout class="QHBoxLayout" name="titleLayout">
<item>
<spacer name="horizontalSpacer">
@@ -370,43 +383,20 @@
</layout>
</item>
<item>
- <spacer name="verticalSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
<layout class="QHBoxLayout" name="explanationLayout">
<item>
<widget class="QLabel" name="explanationLabel">
<property name="text">
<string><html><head/><body><p><span style=" font-size:8pt;">Several of your components (with the same theme) can be grouped within a folder named </span><span style=" font-size:8pt; font-weight:600;">Component Extension</span><span style=" font-size:8pt;">.<br/>Please fill-in the information requested for an </span><span style=" font-size:8pt; font-weight:600;">Componen [...]
</property>
+ <property name="alignment">
+ <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+ </property>
</widget>
</item>
</layout>
</item>
<item>
- <spacer name="verticalSpacer_4">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
<layout class="QGridLayout" name="gridLayout_3">
<property name="bottomMargin">
<number>1</number>
diff --git a/sdk/applications/wizard/ComponentPropertyWidget.cpp b/sdk/applications/wizard/ComponentPropertyWidget.cpp
index fdeb9a8..98be848 100644
--- a/sdk/applications/wizard/ComponentPropertyWidget.cpp
+++ b/sdk/applications/wizard/ComponentPropertyWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -34,14 +34,14 @@
#include <ParameterGenerator.h>
-/** Constructor */
+
ComponentPropertyWidget::ComponentPropertyWidget(ComponentAddPropertyWidget * parent) : QWidget(parent) {
ui.setupUi(this);
this->parent = parent;
typeChanged(ui.typeComboBox->currentText());
}
-/** Destructor */
+
ComponentPropertyWidget::~ComponentPropertyWidget() {}
void ComponentPropertyWidget::remove() {
diff --git a/sdk/applications/wizard/ComponentPropertyWidget.h b/sdk/applications/wizard/ComponentPropertyWidget.h
index 8e3b652..1b879ca 100644
--- a/sdk/applications/wizard/ComponentPropertyWidget.h
+++ b/sdk/applications/wizard/ComponentPropertyWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class ComponentAddPropertyWidget;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to define a component property.
*
*/
class ComponentPropertyWidget : public QWidget {
@@ -47,7 +47,9 @@ class ComponentPropertyWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ComponentPropertyWidget(ComponentAddPropertyWidget * parent);
+ /** Destructor */
~ComponentPropertyWidget();
void setRequiredName();
diff --git a/sdk/applications/wizard/ComponentSummaryState.cpp b/sdk/applications/wizard/ComponentSummaryState.cpp
index 1abc561..78f8b17 100644
--- a/sdk/applications/wizard/ComponentSummaryState.cpp
+++ b/sdk/applications/wizard/ComponentSummaryState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,13 +27,13 @@
#include "ComponentSummaryState.h"
#include "ComponentSummaryWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
// includes from coreschema
#include <Component.hxx>
ComponentSummaryState::ComponentSummaryState(QString name, ComponentSummaryWidget * widget,
- DorothyMainWindow * mainWindow, QState * parent)
+ WizardMainWindow * mainWindow, QState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domComponent = NULL;
}
diff --git a/sdk/applications/wizard/ComponentSummaryState.h b/sdk/applications/wizard/ComponentSummaryState.h
index 4a776d2..3c11069 100644
--- a/sdk/applications/wizard/ComponentSummaryState.h
+++ b/sdk/applications/wizard/ComponentSummaryState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class Component;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to summarise component creation
*
*/
class ComponentSummaryState : public WizardState {
@@ -47,8 +47,10 @@ class ComponentSummaryState : public WizardState {
Q_OBJECT;
public:
- ComponentSummaryState(QString name, ComponentSummaryWidget * widget, DorothyMainWindow * mainWindow, QState * parent);
+ /** Constructor */
+ ComponentSummaryState(QString name, ComponentSummaryWidget * widget, WizardMainWindow * mainWindow, QState * parent);
+ /** Destructor */
~ComponentSummaryState();
void resetComponent(cepcoreschema::Component * domComponent);
diff --git a/sdk/applications/wizard/ComponentSummaryWidget.cpp b/sdk/applications/wizard/ComponentSummaryWidget.cpp
index c33f95d..ec1e069 100644
--- a/sdk/applications/wizard/ComponentSummaryWidget.cpp
+++ b/sdk/applications/wizard/ComponentSummaryWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,11 +33,11 @@
#include <iostream>
-/** Constructor */
+
ComponentSummaryWidget::ComponentSummaryWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ComponentSummaryWidget::~ComponentSummaryWidget() {}
void ComponentSummaryWidget::setToDefault() {
diff --git a/sdk/applications/wizard/ComponentSummaryWidget.h b/sdk/applications/wizard/ComponentSummaryWidget.h
index 0744373..7a243eb 100644
--- a/sdk/applications/wizard/ComponentSummaryWidget.h
+++ b/sdk/applications/wizard/ComponentSummaryWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to summarise the component creation
*
*/
class ComponentSummaryWidget : public QWidget {
@@ -44,7 +44,10 @@ class ComponentSummaryWidget : public QWidget {
Q_OBJECT;
public:
+
+ /** Constructor */
ComponentSummaryWidget(QWidget * parent);
+ /** Destructor */
~ComponentSummaryWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ComponentSummaryWidget.ui b/sdk/applications/wizard/ComponentSummaryWidget.ui
index 9a87f4f..9102bc7 100644
--- a/sdk/applications/wizard/ComponentSummaryWidget.ui
+++ b/sdk/applications/wizard/ComponentSummaryWidget.ui
@@ -475,7 +475,7 @@
<item>
<widget class="QLabel" name="componentSummaryLabel">
<property name="text">
- <string>Test</string>
+ <string/>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/ComponentsCreationState.cpp b/sdk/applications/wizard/ComponentsCreationState.cpp
index cd1ee36..c6544ad 100644
--- a/sdk/applications/wizard/ComponentsCreationState.cpp
+++ b/sdk/applications/wizard/ComponentsCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,18 +26,18 @@
// Include .h file
#include "ComponentsCreationState.h"
#include "ComponentsCreationWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ComponentExtensionCreationState.h"
// includes from coreschema
#include <ComponentExtension.hxx>
/** Constructor */
-ComponentsCreationState::ComponentsCreationState(QString name, ComponentsCreationWidget * widget, DorothyMainWindow * mainWindow, ComponentExtensionCreationState * parent)
+ComponentsCreationState::ComponentsCreationState(QString name, ComponentsCreationWidget * widget, WizardMainWindow * mainWindow, ComponentExtensionCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domComponentExtension = NULL;
}
-/** Destructor */
+
ComponentsCreationState::~ComponentsCreationState() {}
void ComponentsCreationState::resetDomComponentExtension(cepcoreschema::ComponentExtension *domComponentExtension) {
diff --git a/sdk/applications/wizard/ComponentsCreationState.h b/sdk/applications/wizard/ComponentsCreationState.h
index aa05238..10834ab 100644
--- a/sdk/applications/wizard/ComponentsCreationState.h
+++ b/sdk/applications/wizard/ComponentsCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create components
*
*/
class ComponentsCreationState : public WizardState {
@@ -48,8 +48,10 @@ class ComponentsCreationState : public WizardState {
Q_OBJECT;
public:
- ComponentsCreationState(QString name, ComponentsCreationWidget * widget, DorothyMainWindow * mainWindow, ComponentExtensionCreationState * parent);
+ /** Constructor */
+ ComponentsCreationState(QString name, ComponentsCreationWidget * widget, WizardMainWindow * mainWindow, ComponentExtensionCreationState * parent);
+ /** Destructor */
~ComponentsCreationState();
void resetDomComponentExtension(cepcoreschema::ComponentExtension * domComponentExtension);
diff --git a/sdk/applications/wizard/ComponentsCreationWidget.cpp b/sdk/applications/wizard/ComponentsCreationWidget.cpp
index 6a299e3..6416efb 100644
--- a/sdk/applications/wizard/ComponentsCreationWidget.cpp
+++ b/sdk/applications/wizard/ComponentsCreationWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,12 +31,12 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
ComponentsCreationWidget::ComponentsCreationWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ComponentsCreationWidget::~ComponentsCreationWidget() {}
void ComponentsCreationWidget::setToDefault() {
@@ -47,6 +47,7 @@ void ComponentsCreationWidget::setToDefault() {
void ComponentsCreationWidget::nextButtonClicked() {
// check if at least an action has been created
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
if (createdComponents.isEmpty()) {
ui.requiredLabel->setStyleSheet(enhancedStyle);
ui.label_Star->setStyleSheet(enhancedStyle);
@@ -58,6 +59,9 @@ void ComponentsCreationWidget::nextButtonClicked() {
emit next();
}
+#else
+ emit next();
+#endif
}
void ComponentsCreationWidget::addComponentClicked() {
diff --git a/sdk/applications/wizard/ComponentsCreationWidget.h b/sdk/applications/wizard/ComponentsCreationWidget.h
index f36b926..d9c1107 100644
--- a/sdk/applications/wizard/ComponentsCreationWidget.h
+++ b/sdk/applications/wizard/ComponentsCreationWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to create components
*
*/
class ComponentsCreationWidget : public QWidget {
@@ -44,7 +44,10 @@ class ComponentsCreationWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ComponentsCreationWidget(QWidget * parent);
+
+ /** Destructor */
~ComponentsCreationWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/ComponentsCreationWidget.ui b/sdk/applications/wizard/ComponentsCreationWidget.ui
index c19574e..cf19015 100644
--- a/sdk/applications/wizard/ComponentsCreationWidget.ui
+++ b/sdk/applications/wizard/ComponentsCreationWidget.ui
@@ -359,7 +359,7 @@
</font>
</property>
<property name="text">
- <string><html><head/><body><p>Create the Components</p></body></html></string>
+ <string><html><head/><body><p>Create your Components</p></body></html></string>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/DefaultGUIText.h b/sdk/applications/wizard/DefaultGUIText.h
index faad01e..995f45b 100644
--- a/sdk/applications/wizard/DefaultGUIText.h
+++ b/sdk/applications/wizard/DefaultGUIText.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -56,7 +56,7 @@ static const QString defaultUserLicence = "/************************************
* $USERDEF_LICENCE_BEGIN$<br/>\
* <br/>\
* CamiTK - Computer Assisted Medical Intervention ToolKit <br/>\
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO) <br/>\
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO) <br/>\
* <br/>\
* Visit http://camitk.imag.fr for more information <br/>\
* <br/>\
diff --git a/sdk/applications/wizard/DependenciesState.cpp b/sdk/applications/wizard/DependenciesState.cpp
index 960eb9a..e5e7226 100644
--- a/sdk/applications/wizard/DependenciesState.cpp
+++ b/sdk/applications/wizard/DependenciesState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "DependenciesState.h"
#include "DependenciesWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "ActionExtensionDependenciesState.h"
// Includes from cepgenerator
@@ -42,13 +42,12 @@
// temporary include
#include <iostream>
-/** Constructor */
-DependenciesState::DependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, QState * parent)
+
+DependenciesState::DependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, QState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domCep = domCep;
}
-/** Destructor */
DependenciesState::~DependenciesState() {}
diff --git a/sdk/applications/wizard/DependenciesState.h b/sdk/applications/wizard/DependenciesState.h
index bb63420..c74e543 100644
--- a/sdk/applications/wizard/DependenciesState.h
+++ b/sdk/applications/wizard/DependenciesState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class Dependencies;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Basic state to define dependencies
*
*/
class DependenciesState : public WizardState {
@@ -48,8 +48,9 @@ class DependenciesState : public WizardState {
Q_OBJECT;
public:
- DependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, QState * parent);
-
+ /** Constructor */
+ DependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, QState * parent);
+ /** Destructor */
~DependenciesState();
protected:
diff --git a/sdk/applications/wizard/DependenciesWidget.cpp b/sdk/applications/wizard/DependenciesWidget.cpp
index f0335ab..869661e 100644
--- a/sdk/applications/wizard/DependenciesWidget.cpp
+++ b/sdk/applications/wizard/DependenciesWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,11 +31,11 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
DependenciesWidget::DependenciesWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
DependenciesWidget::~DependenciesWidget() {}
void DependenciesWidget::setToDefault() {
diff --git a/sdk/applications/wizard/DependenciesWidget.h b/sdk/applications/wizard/DependenciesWidget.h
index bac6a3b..d9fb8d3 100644
--- a/sdk/applications/wizard/DependenciesWidget.h
+++ b/sdk/applications/wizard/DependenciesWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,7 +37,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to define dependencies
*
*/
class DependenciesWidget : public QWidget {
@@ -45,7 +45,9 @@ class DependenciesWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
DependenciesWidget(QWidget * parent);
+ /** Destructor */
~DependenciesWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/DependenciesWidget.ui b/sdk/applications/wizard/DependenciesWidget.ui
index 4ce343e..09fe174 100644
--- a/sdk/applications/wizard/DependenciesWidget.ui
+++ b/sdk/applications/wizard/DependenciesWidget.ui
@@ -297,6 +297,19 @@
</layout>
</item>
<item>
+ <spacer name="verticalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<widget class="QLabel" name="ExplanationLabel">
<property name="text">
<string/>
@@ -494,6 +507,19 @@
</widget>
</item>
<item>
+ <spacer name="verticalSpacer_3">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<widget class="QGroupBox" name="groupBox_2">
<property name="title">
<string>CamiTK Dependencies</string>
@@ -629,6 +655,19 @@
</widget>
</item>
<item>
+ <spacer name="verticalSpacer_4">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<widget class="QGroupBox" name="groupBox">
<property name="title">
<string>External Libraries Dependencies</string>
diff --git a/sdk/applications/wizard/DorothyMainWindow.cpp b/sdk/applications/wizard/DorothyMainWindow.cpp
deleted file mode 100644
index d88489d..0000000
--- a/sdk/applications/wizard/DorothyMainWindow.cpp
+++ /dev/null
@@ -1,88 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// Include .h file
-#include "DorothyMainWindow.h"
-
-// includes from QT
-#include <QUrl>
-#include <QDesktopServices>
-#include <QPalette>
-#include <QPixmap>
-#include <QFile>
-
-#include <iostream>
-
-/** Constructor */
-DorothyMainWindow::DorothyMainWindow() : QMainWindow(NULL) {
-
- ui.setupUi(this);
-
- QFile stylesheetFile(":/resources/stylesheet.qss");
- stylesheetFile.open(QFile::ReadOnly);
- QString styleSheet = QString(stylesheetFile.readAll());
- ui.centralwidget->setStyleSheet(styleSheet);
-
- widgetStack = new QStackedWidget();
- widgetStack->setFrameStyle(QFrame::StyledPanel | QFrame::Sunken);
- widgetStack->setLineWidth(3);
- // insert empty widget to fill the space by default
- emptyWidgetIndex = widgetStack->addWidget(new QWidget());
- // add widget stack to layout.
- ui.mainLayout->addWidget(widgetStack);
-
- // CONNECT
- //WelcomeWindow
- QObject::connect(ui.helpPushButton , SIGNAL(clicked()), this, SLOT(welcomeHelp()));
-}
-
-/** Destructor */
-DorothyMainWindow::~DorothyMainWindow() {}
-
-// Welcome buttons
-/** When button Help of WelcomeWindow interface is clicked, the wiki page "New interfaces of Wizard" opens */
-void DorothyMainWindow::welcomeHelp() {
- QUrl helpUrl("https://forge.imag.fr/plugins/mediawiki/wiki/camitk/index.php/New_interfaces_of_Wizard");
- QDesktopServices::openUrl(helpUrl);
-}
-
-
-void DorothyMainWindow::setCentralWidget(QWidget * widget) {
- //-- check history
- int widgetIndex = widgetStack->indexOf(widget);
-
- if (widgetIndex == -1 && widget) {
- // add the widget (beware that actionWidgetStack then takes ownership of the widget!)
- widgetIndex = widgetStack->addWidget(widget);
- }
-
- widgetStack->setCurrentIndex(widgetIndex);
-
- widgetStack->update();
-}
-
-void DorothyMainWindow::setStateInfo(QString info) {
-// ui.currentStateLabel->setText(info);
-}
diff --git a/sdk/applications/wizard/DorothyMainWindow.h b/sdk/applications/wizard/DorothyMainWindow.h
deleted file mode 100644
index 0e4caf8..0000000
--- a/sdk/applications/wizard/DorothyMainWindow.h
+++ /dev/null
@@ -1,75 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#ifndef DOROTHYMAINWINDOW_H
-#define DOROTHYMAINWINDOW_H
-
-// Include GUI automatically generated file
-#include "ui_DorothyMainWindow.h"
-
-// includes from Qt
-#include <QStackedWidget>
-
-class QPixmap;
-class QPalette;
-
-/**
- * @ingroup group_sdk_application_wizard
- *
- * @brief
- * TODO Celine please comment here.
- *
- */
-class DorothyMainWindow : public QMainWindow {
- /*! \class WelcomeWindow
- * Class linked with welcome interface which allows user to choose what he want to create ( action, component etc..)
- *
- */
- Q_OBJECT;
-
-public:
- DorothyMainWindow();
- ~DorothyMainWindow();
-
-// void resizeEvent (QResizeEvent* event);
-
- void setCentralWidget(QWidget * widget);
- void setStateInfo(QString info);
-
-public slots:
- virtual void welcomeHelp();
-
-
-private:
- QStackedWidget * widgetStack;
- /// index of the empty widget,
- /// used when no state is active
- int emptyWidgetIndex;
-
- Ui::DorothyMainWindow ui;
-
-// QPixmap * backgroundPixmap;
-// QPalette * palette;
-};
-#endif
diff --git a/sdk/applications/wizard/DorothyMainWindow.ui b/sdk/applications/wizard/DorothyMainWindow.ui
deleted file mode 100644
index 5b43463..0000000
--- a/sdk/applications/wizard/DorothyMainWindow.ui
+++ /dev/null
@@ -1,250 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>DorothyMainWindow</class>
- <widget class="QMainWindow" name="DorothyMainWindow">
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>1024</width>
- <height>768</height>
- </rect>
- </property>
- <property name="sizePolicy">
- <sizepolicy hsizetype="MinimumExpanding" vsizetype="MinimumExpanding">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="minimumSize">
- <size>
- <width>800</width>
- <height>600</height>
- </size>
- </property>
- <property name="windowTitle">
- <string>CamiTK-Wizard</string>
- </property>
- <property name="windowIcon">
- <iconset resource="wizard.qrc">
- <normaloff>:/resources/implogo.png</normaloff>:/resources/implogo.png</iconset>
- </property>
- <property name="styleSheet">
- <string notr="true"/>
- </property>
- <property name="iconSize">
- <size>
- <width>64</width>
- <height>64</height>
- </size>
- </property>
- <widget class="QWidget" name="centralwidget">
- <property name="styleSheet">
- <string notr="true"/>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout">
- <item>
- <widget class="QFrame" name="logosFrame">
- <property name="frameShape">
- <enum>QFrame::StyledPanel</enum>
- </property>
- <property name="frameShadow">
- <enum>QFrame::Raised</enum>
- </property>
- <layout class="QHBoxLayout" name="horizontalLayout">
- <item>
- <widget class="QLabel" name="ujfLogoLabel">
- <property name="sizePolicy">
- <sizepolicy hsizetype="Maximum" vsizetype="Preferred">
- <horstretch>0</horstretch>
- <verstretch>0</verstretch>
- </sizepolicy>
- </property>
- <property name="minimumSize">
- <size>
- <width>64</width>
- <height>64</height>
- </size>
- </property>
- <property name="maximumSize">
- <size>
- <width>64</width>
- <height>64</height>
- </size>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="pixmap">
- <pixmap resource="wizard.qrc">:/resources/ujf-small.png</pixmap>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="logosHSpacer02">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QLabel" name="camitkLogoLabel">
- <property name="minimumSize">
- <size>
- <width>64</width>
- <height>32</height>
- </size>
- </property>
- <property name="maximumSize">
- <size>
- <width>128</width>
- <height>64</height>
- </size>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="pixmap">
- <pixmap resource="wizard.qrc">:/resources/CEP-logo.png</pixmap>
- </property>
- <property name="scaledContents">
- <bool>true</bool>
- </property>
- </widget>
- </item>
- <item>
- <spacer name="logosHSpacer01">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="helpPushButton">
- <property name="minimumSize">
- <size>
- <width>32</width>
- <height>32</height>
- </size>
- </property>
- <property name="maximumSize">
- <size>
- <width>128</width>
- <height>32</height>
- </size>
- </property>
- <property name="cursor">
- <cursorShape>WhatsThisCursor</cursorShape>
- </property>
- <property name="text">
- <string>Help</string>
- </property>
- <property name="icon">
- <iconset resource="wizard.qrc">
- <normaloff>:/resources/ktip.png</normaloff>:/resources/ktip.png</iconset>
- </property>
- <property name="iconSize">
- <size>
- <width>16</width>
- <height>16</height>
- </size>
- </property>
- </widget>
- </item>
- </layout>
- </widget>
- </item>
- <item>
- <widget class="Line" name="LogosLine">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- </widget>
- </item>
- <item>
- <widget class="QScrollArea" name="mainScrollArea">
- <property name="styleSheet">
- <string notr="true"/>
- </property>
- <property name="widgetResizable">
- <bool>true</bool>
- </property>
- <widget class="QWidget" name="scrollAreaWidgetContents">
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>1010</width>
- <height>637</height>
- </rect>
- </property>
- <property name="styleSheet">
- <string notr="true"/>
- </property>
- <layout class="QVBoxLayout" name="verticalLayout_3">
- <item>
- <spacer name="BottomVSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <layout class="QVBoxLayout" name="mainLayout"/>
- </item>
- <item>
- <spacer name="LogosVSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- </layout>
- </widget>
- </widget>
- </item>
- <item>
- <widget class="Line" name="BottomLine">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- </widget>
- </item>
- </layout>
- </widget>
- <widget class="QStatusBar" name="statusbar"/>
- </widget>
- <resources>
- <include location="wizard.qrc"/>
- </resources>
- <connections/>
- <slots>
- <slot>pushButtonHelpClicked()</slot>
- <slot>pushButtonStartClicked()</slot>
- <slot>labelXMLClicked()</slot>
- </slots>
-</ui>
diff --git a/sdk/applications/wizard/ExtensionSummaryState.cpp b/sdk/applications/wizard/ExtensionSummaryState.cpp
index 2c81c5e..081e5e3 100644
--- a/sdk/applications/wizard/ExtensionSummaryState.cpp
+++ b/sdk/applications/wizard/ExtensionSummaryState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,7 +27,7 @@
#include "ExtensionSummaryState.h"
#include "ExtensionSummaryWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
// includes from coreschema
#include <ActionExtension.hxx>
@@ -39,7 +39,7 @@
#include <Component.hxx>
ExtensionSummaryState::ExtensionSummaryState(QString name, ExtensionSummaryWidget * widget,
- QString type, DorothyMainWindow * mainWindow, QState * parent)
+ QString type, WizardMainWindow * mainWindow, QState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->type = type;
this->domActionExtension = NULL;
diff --git a/sdk/applications/wizard/ExtensionSummaryState.h b/sdk/applications/wizard/ExtensionSummaryState.h
index d9dbcb8..b069a51 100644
--- a/sdk/applications/wizard/ExtensionSummaryState.h
+++ b/sdk/applications/wizard/ExtensionSummaryState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class ComponentExtension;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to summarize extension
*
*/
class ExtensionSummaryState : public WizardState {
@@ -48,8 +48,10 @@ class ExtensionSummaryState : public WizardState {
Q_OBJECT;
public:
- ExtensionSummaryState(QString name, ExtensionSummaryWidget * widget, QString type, DorothyMainWindow * mainWindow, QState * parent);
+ /** Constructor*/
+ ExtensionSummaryState(QString name, ExtensionSummaryWidget * widget, QString type, WizardMainWindow * mainWindow, QState * parent);
+ /** Destructor*/
~ExtensionSummaryState();
void setActionExtension(cepcoreschema::ActionExtension * domActionExtension);
diff --git a/sdk/applications/wizard/ExtensionSummaryWidget.cpp b/sdk/applications/wizard/ExtensionSummaryWidget.cpp
index 742032b..282acaa 100644
--- a/sdk/applications/wizard/ExtensionSummaryWidget.cpp
+++ b/sdk/applications/wizard/ExtensionSummaryWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,11 +31,10 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
ExtensionSummaryWidget::ExtensionSummaryWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
ExtensionSummaryWidget::~ExtensionSummaryWidget() {}
void ExtensionSummaryWidget::setToDefault() {
diff --git a/sdk/applications/wizard/ExtensionSummaryWidget.h b/sdk/applications/wizard/ExtensionSummaryWidget.h
index 6495db3..3a5ac54 100644
--- a/sdk/applications/wizard/ExtensionSummaryWidget.h
+++ b/sdk/applications/wizard/ExtensionSummaryWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to summarize the extension
*
*/
class ExtensionSummaryWidget : public QWidget {
@@ -44,7 +44,9 @@ class ExtensionSummaryWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
ExtensionSummaryWidget(QWidget * parent);
+ /** Destructor */
~ExtensionSummaryWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/GeneratingCEPState.cpp b/sdk/applications/wizard/GeneratingCEPState.cpp
index fe664dd..9a6c701 100644
--- a/sdk/applications/wizard/GeneratingCEPState.cpp
+++ b/sdk/applications/wizard/GeneratingCEPState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,7 +26,7 @@
// Include .h file
#include "GeneratingCEPState.h"
#include "GeneratingCEPWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "DefaultGUIText.h"
#include <CepGenerator.h>
@@ -47,13 +47,13 @@
static const QString cepSchemaNamespace = "http://camitk.imag.fr/cepcoreschema";
/** Constructor */
-GeneratingCEPState::GeneratingCEPState(QString name, GeneratingCEPWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, QString * directoryName, QMap<QString, QStringList> * copyFilesMap)
+GeneratingCEPState::GeneratingCEPState(QString name, GeneratingCEPWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, QString * directoryName, QMap<QString, QStringList> * copyFilesMap)
: WizardState(name, widget, mainWindow) {
this->domCep = domCep;
this->directoryName = directoryName;
this->copyFilesMap = copyFilesMap;
}
-/** Destructor */
+
GeneratingCEPState::~GeneratingCEPState() {}
@@ -64,7 +64,10 @@ void GeneratingCEPState::onEntry ( QEvent * event ) {
cepcoreschema::Cep aCep(*domCep);
std::auto_ptr<cepcoreschema::Cep> domCepPtr(domCep);
- CepGenerator::generateCEP(domCepPtr, (*directoryName));
+
+ CepGenerator* cepGenerator = new CepGenerator(domCepPtr, (*directoryName));
+ cepGenerator->process();
+ delete cepGenerator;
std::cout << "CEP generated !" << std::endl;
diff --git a/sdk/applications/wizard/GeneratingCEPState.h b/sdk/applications/wizard/GeneratingCEPState.h
index 27a2299..911cbe2 100644
--- a/sdk/applications/wizard/GeneratingCEPState.h
+++ b/sdk/applications/wizard/GeneratingCEPState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -42,7 +42,7 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to generate CEP
*
*/
class GeneratingCEPState : public WizardState {
@@ -50,7 +50,9 @@ class GeneratingCEPState : public WizardState {
Q_OBJECT;
public:
- GeneratingCEPState(QString name, GeneratingCEPWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, QString * directoryName, QMap<QString, QStringList> * copyFilesMap);
+ /** Constructor */
+ GeneratingCEPState(QString name, GeneratingCEPWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, QString * directoryName, QMap<QString, QStringList> * copyFilesMap);
+ /** Destructor */
~GeneratingCEPState();
protected:
diff --git a/sdk/applications/wizard/GeneratingCEPWidget.cpp b/sdk/applications/wizard/GeneratingCEPWidget.cpp
index c65dd0c..8a99aa1 100644
--- a/sdk/applications/wizard/GeneratingCEPWidget.cpp
+++ b/sdk/applications/wizard/GeneratingCEPWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,11 +29,11 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
GeneratingCEPWidget::GeneratingCEPWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
GeneratingCEPWidget::~GeneratingCEPWidget() {}
void GeneratingCEPWidget::nextButtonClicked() {
diff --git a/sdk/applications/wizard/GeneratingCEPWidget.h b/sdk/applications/wizard/GeneratingCEPWidget.h
index 00374ce..de60f7e 100644
--- a/sdk/applications/wizard/GeneratingCEPWidget.h
+++ b/sdk/applications/wizard/GeneratingCEPWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to generate CEP
*
*/
class GeneratingCEPWidget : public QWidget {
@@ -43,7 +43,9 @@ class GeneratingCEPWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
GeneratingCEPWidget(QWidget * parent);
+ /** Destructor */
~GeneratingCEPWidget();
void setTitle(QString newTitle);
diff --git a/sdk/applications/wizard/GeneratingCEPWidget.ui b/sdk/applications/wizard/GeneratingCEPWidget.ui
index a7c8633..89c6f14 100644
--- a/sdk/applications/wizard/GeneratingCEPWidget.ui
+++ b/sdk/applications/wizard/GeneratingCEPWidget.ui
@@ -44,7 +44,7 @@
<item>
<widget class="QLabel" name="xmlLabel">
<property name="text">
- <string>TextLabel</string>
+ <string/>
</property>
</widget>
</item>
diff --git a/sdk/applications/wizard/LibraryCopyFilesState.cpp b/sdk/applications/wizard/LibraryCopyFilesState.cpp
index ff23c76..431a689 100644
--- a/sdk/applications/wizard/LibraryCopyFilesState.cpp
+++ b/sdk/applications/wizard/LibraryCopyFilesState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,19 +26,18 @@
// Include .h file
#include "LibraryCopyFilesState.h"
#include "LibraryCopyFilesWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "LibraryCreationState.h"
// includes from coreschema
#include <Library.hxx>
-/** Constructor */
-LibraryCopyFilesState::LibraryCopyFilesState(QString name, LibraryCopyFilesWidget * widget, DorothyMainWindow * mainWindow, QMap<QString, QStringList> *libraryFilesMap, LibraryCreationState * parent)
+LibraryCopyFilesState::LibraryCopyFilesState(QString name, LibraryCopyFilesWidget * widget, WizardMainWindow * mainWindow, QMap<QString, QStringList> *libraryFilesMap, LibraryCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domLibrary = NULL;
this->libraryFilesMap = libraryFilesMap;
}
-/** Destructor */
+
LibraryCopyFilesState::~LibraryCopyFilesState() {}
void LibraryCopyFilesState::resetDomLibrary(cepcoreschema::Library *domLibrary) {
diff --git a/sdk/applications/wizard/LibraryCopyFilesState.h b/sdk/applications/wizard/LibraryCopyFilesState.h
index efcf795..9e73b78 100644
--- a/sdk/applications/wizard/LibraryCopyFilesState.h
+++ b/sdk/applications/wizard/LibraryCopyFilesState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class Library;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to copy files in library
*
*/
class LibraryCopyFilesState : public WizardState {
@@ -48,8 +48,10 @@ class LibraryCopyFilesState : public WizardState {
Q_OBJECT;
public:
- LibraryCopyFilesState(QString name, LibraryCopyFilesWidget * widget, DorothyMainWindow * mainWindow, QMap<QString, QStringList> *libraryFilesMap, LibraryCreationState * parent);
+ /** Constructor */
+ LibraryCopyFilesState(QString name, LibraryCopyFilesWidget * widget, WizardMainWindow * mainWindow, QMap<QString, QStringList> *libraryFilesMap, LibraryCreationState * parent);
+ /** Destructor */
~LibraryCopyFilesState();
void resetDomLibrary(cepcoreschema::Library * domLibrary);
diff --git a/sdk/applications/wizard/LibraryCopyFilesWidget.cpp b/sdk/applications/wizard/LibraryCopyFilesWidget.cpp
index b8791cf..fecb2a9 100644
--- a/sdk/applications/wizard/LibraryCopyFilesWidget.cpp
+++ b/sdk/applications/wizard/LibraryCopyFilesWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,12 +35,12 @@
#include <iostream>
-/** Constructor */
+
LibraryCopyFilesWidget::LibraryCopyFilesWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault();
}
-/** Destructor */
+
LibraryCopyFilesWidget::~LibraryCopyFilesWidget() {}
void LibraryCopyFilesWidget::setToDefault() {
diff --git a/sdk/applications/wizard/LibraryCopyFilesWidget.h b/sdk/applications/wizard/LibraryCopyFilesWidget.h
index edb1e69..c811bbf 100644
--- a/sdk/applications/wizard/LibraryCopyFilesWidget.h
+++ b/sdk/applications/wizard/LibraryCopyFilesWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -36,7 +36,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to copy files to library
*
*/
class LibraryCopyFilesWidget : public QWidget {
@@ -44,7 +44,9 @@ class LibraryCopyFilesWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
LibraryCopyFilesWidget(QWidget * parent);
+ /** Destructor */
~LibraryCopyFilesWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/LibraryCopyFilesWidget.ui b/sdk/applications/wizard/LibraryCopyFilesWidget.ui
index e321013..7d0cab3 100644
--- a/sdk/applications/wizard/LibraryCopyFilesWidget.ui
+++ b/sdk/applications/wizard/LibraryCopyFilesWidget.ui
@@ -281,8 +281,8 @@
<rect>
<x>0</x>
<y>0</y>
- <width>637</width>
- <height>438</height>
+ <width>625</width>
+ <height>447</height>
</rect>
</property>
<layout class="QHBoxLayout" name="horizontalLayout_3">
@@ -301,11 +301,11 @@
<layout class="QHBoxLayout" name="horizontalLayout_2">
<item>
<widget class="QPushButton" name="addFilePushButton">
- <property name="minimumSize">
- <size>
- <width>512</width>
- <height>32</height>
- </size>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
</property>
<property name="maximumSize">
<size>
diff --git a/sdk/applications/wizard/LibraryCreationState.cpp b/sdk/applications/wizard/LibraryCreationState.cpp
index 85e6b19..c882f07 100644
--- a/sdk/applications/wizard/LibraryCreationState.cpp
+++ b/sdk/applications/wizard/LibraryCreationState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,7 +25,7 @@
// Include .h file
#include "LibraryCreationState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "LibraryDescriptionWidget.h"
#include "LibraryDescriptionState.h"
@@ -41,8 +41,8 @@
#include <QMessageBox>
#include <iostream>
-/** Constructor */
-LibraryCreationState::LibraryCreationState(QString name, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, QMap<QString, QStringList> *libraryFilesMap) : QState() {
+
+LibraryCreationState::LibraryCreationState(QString name, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, QMap<QString, QStringList> *libraryFilesMap) : QState() {
this->name = name;
this->domCep = domCep;
this->libraryFilesMap = libraryFilesMap;
@@ -53,7 +53,7 @@ LibraryCreationState::LibraryCreationState(QString name, DorothyMainWindow * mai
}
-/** Destructor */
+
LibraryCreationState::~LibraryCreationState() {}
@@ -100,7 +100,7 @@ void LibraryCreationState::extensionCancelled() {
emit next();
}
-void LibraryCreationState::createSubStates(DorothyMainWindow * mainWindow) {
+void LibraryCreationState::createSubStates(WizardMainWindow * mainWindow) {
libraryDescriptionWidget = new LibraryDescriptionWidget(NULL);
libraryDescriptionState = new LibraryDescriptionState("Library Description", libraryDescriptionWidget, mainWindow, this);
diff --git a/sdk/applications/wizard/LibraryCreationState.h b/sdk/applications/wizard/LibraryCreationState.h
index 0c71aea..d94a8b6 100644
--- a/sdk/applications/wizard/LibraryCreationState.h
+++ b/sdk/applications/wizard/LibraryCreationState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
// Sub States
class LibraryDescriptionWidget;
class LibraryDescriptionState;
@@ -48,7 +48,9 @@ class Library;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to create library
+ *
+ * This state manages sub-state to create one library.
*
*/
class LibraryCreationState : public QState {
@@ -56,7 +58,9 @@ class LibraryCreationState : public QState {
Q_OBJECT;
public:
- LibraryCreationState(QString name, DorothyMainWindow * mainWidnow, cepcoreschema::Cep * domCep, QMap<QString, QStringList> *libraryFilesMap);
+ /** Constructor */
+ LibraryCreationState(QString name, WizardMainWindow * mainWidnow, cepcoreschema::Cep * domCep, QMap<QString, QStringList> *libraryFilesMap);
+ /** Destructor */
~LibraryCreationState();
signals:
@@ -86,7 +90,7 @@ private:
bool cancelled;
- void createSubStates(DorothyMainWindow * mainWindow);
+ void createSubStates(WizardMainWindow * mainWindow);
QString name;
cepcoreschema::Cep * domCep;
diff --git a/sdk/applications/wizard/LibraryDependenciesState.cpp b/sdk/applications/wizard/LibraryDependenciesState.cpp
index 953fcd8..a6362d5 100644
--- a/sdk/applications/wizard/LibraryDependenciesState.cpp
+++ b/sdk/applications/wizard/LibraryDependenciesState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,21 +25,21 @@
// Include .h file
#include "LibraryDependenciesState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "LibraryCreationState.h"
#include "DependenciesWidget.h"
// includes from coreschema
#include <Library.hxx>
-/** Constructor */
-LibraryDependenciesState::LibraryDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, LibraryCreationState * parent)
+
+LibraryDependenciesState::LibraryDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, LibraryCreationState * parent)
: DependenciesState(name, widget, mainWindow, domCep, parent) {
this->domLibrary = NULL;
widget->setElement("Library");
}
-/** Destructor */
+
LibraryDependenciesState::~LibraryDependenciesState() {}
void LibraryDependenciesState::resetDomLibrary(cepcoreschema::Library *domLibrary) {
diff --git a/sdk/applications/wizard/LibraryDependenciesState.h b/sdk/applications/wizard/LibraryDependenciesState.h
index 4833b75..b51216d 100644
--- a/sdk/applications/wizard/LibraryDependenciesState.h
+++ b/sdk/applications/wizard/LibraryDependenciesState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,7 +39,7 @@ class Library;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to define dependencies to the library
*
*/
class LibraryDependenciesState : public DependenciesState {
@@ -47,8 +47,10 @@ class LibraryDependenciesState : public DependenciesState {
Q_OBJECT;
public:
- LibraryDependenciesState(QString name, DependenciesWidget * widget, DorothyMainWindow * mainWindow, cepcoreschema::Cep * domCep, LibraryCreationState * parent);
+ /** Constructor */
+ LibraryDependenciesState(QString name, DependenciesWidget * widget, WizardMainWindow * mainWindow, cepcoreschema::Cep * domCep, LibraryCreationState * parent);
+ /** Destructor */
~LibraryDependenciesState();
void resetDomLibrary(cepcoreschema::Library * domLibrary);
diff --git a/sdk/applications/wizard/LibraryDescriptionState.cpp b/sdk/applications/wizard/LibraryDescriptionState.cpp
index 6f0e568..66955a9 100644
--- a/sdk/applications/wizard/LibraryDescriptionState.cpp
+++ b/sdk/applications/wizard/LibraryDescriptionState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,18 +26,17 @@
// Include .h file
#include "LibraryDescriptionState.h"
#include "LibraryDescriptionWidget.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "LibraryCreationState.h"
// includes from coreschema
#include <Library.hxx>
-/** Constructor */
-LibraryDescriptionState::LibraryDescriptionState(QString name, LibraryDescriptionWidget * widget, DorothyMainWindow * mainWindow, LibraryCreationState * parent)
+LibraryDescriptionState::LibraryDescriptionState(QString name, LibraryDescriptionWidget * widget, WizardMainWindow * mainWindow, LibraryCreationState * parent)
: WizardState(name, widget, mainWindow, parent) {
this->domLibrary = NULL;
}
-/** Destructor */
+
LibraryDescriptionState::~LibraryDescriptionState() {}
void LibraryDescriptionState::resetDomLibrary(cepcoreschema::Library *domLibrary) {
diff --git a/sdk/applications/wizard/LibraryDescriptionState.h b/sdk/applications/wizard/LibraryDescriptionState.h
index 9f5c196..cd1b8f2 100644
--- a/sdk/applications/wizard/LibraryDescriptionState.h
+++ b/sdk/applications/wizard/LibraryDescriptionState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class Library;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * State to describe library
*
*/
class LibraryDescriptionState : public WizardState {
@@ -48,8 +48,10 @@ class LibraryDescriptionState : public WizardState {
Q_OBJECT;
public:
- LibraryDescriptionState(QString name, LibraryDescriptionWidget * widget, DorothyMainWindow * mainWindow, LibraryCreationState * parent);
+ /** Constructor */
+ LibraryDescriptionState(QString name, LibraryDescriptionWidget * widget, WizardMainWindow * mainWindow, LibraryCreationState * parent);
+ /** Destructor */
~LibraryDescriptionState();
void resetDomLibrary( cepcoreschema::Library * domLibrary);
diff --git a/sdk/applications/wizard/LibraryDescriptionWidget.cpp b/sdk/applications/wizard/LibraryDescriptionWidget.cpp
index fb6dea8..4e199ca 100644
--- a/sdk/applications/wizard/LibraryDescriptionWidget.cpp
+++ b/sdk/applications/wizard/LibraryDescriptionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,12 +30,12 @@
// Qt files
#include <QMessageBox>
-/** Constructor */
+
LibraryDescriptionWidget::LibraryDescriptionWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
setToDefault();
}
-/** Destructor */
+
LibraryDescriptionWidget::~LibraryDescriptionWidget() {}
void LibraryDescriptionWidget::setToDefault() {
@@ -48,7 +48,8 @@ void LibraryDescriptionWidget::nextButtonClicked() {
QString libraryName = ui.libraryNameItself->text();
QString libraryDescription = ui.libraryDescriptionItself->toPlainText();
- if (libraryName.toUtf8() != libraryName.toAscii()) {
+#ifndef _WIZARD_QUESTIONS_SQUEEZE
+ if (libraryName.toUtf8() != libraryName.toLatin1()) {
ui.libraryNameStar->setStyleSheet(enhancedStyle);
ui.libraryDescriptionStar->setStyleSheet(normalStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -62,8 +63,7 @@ void LibraryDescriptionWidget::nextButtonClicked() {
ui.requiredLabel->setStyleSheet(enhancedStyle);
QMessageBox::warning(this, defaultBeforeGoingFurther, defaultRealLibraryName);
- }
- if (libraryDescription.toUtf8() != libraryDescription.toAscii()) {
+ } else if (libraryDescription.toUtf8() != libraryDescription.toLatin1()) {
ui.libraryNameStar->setStyleSheet(normalStyle);
ui.libraryDescriptionStar->setStyleSheet(enhancedStyle);
ui.requiredLabel->setStyleSheet(enhancedStyle);
@@ -84,6 +84,9 @@ void LibraryDescriptionWidget::nextButtonClicked() {
emit next();
}
+#else
+ emit next();
+#endif
}
void LibraryDescriptionWidget::setLibraryName(QString name) {
@@ -103,6 +106,9 @@ void LibraryDescriptionWidget::setStatic(bool isStatic) {
}
void LibraryDescriptionWidget::cancelButtonClicked() {
+ ui.libraryNameStar->setStyleSheet(normalStyle);
+ ui.libraryDescriptionStar->setStyleSheet(normalStyle);
+ ui.requiredLabel->setStyleSheet(normalStyle);
emit cancel();
}
diff --git a/sdk/applications/wizard/LibraryDescriptionWidget.h b/sdk/applications/wizard/LibraryDescriptionWidget.h
index 60e9788..d02f6b9 100644
--- a/sdk/applications/wizard/LibraryDescriptionWidget.h
+++ b/sdk/applications/wizard/LibraryDescriptionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,7 +35,7 @@
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Widget to describe a library.
*
*/
class LibraryDescriptionWidget : public QWidget {
@@ -43,7 +43,9 @@ class LibraryDescriptionWidget : public QWidget {
Q_OBJECT;
public:
+ /** Constructor */
LibraryDescriptionWidget(QWidget * parent);
+ /** Destructor */
~LibraryDescriptionWidget();
void setToDefault();
diff --git a/sdk/applications/wizard/LibraryDescriptionWidget.ui b/sdk/applications/wizard/LibraryDescriptionWidget.ui
index 6cd4fef..4338e6e 100644
--- a/sdk/applications/wizard/LibraryDescriptionWidget.ui
+++ b/sdk/applications/wizard/LibraryDescriptionWidget.ui
@@ -258,6 +258,19 @@
</layout>
</item>
<item>
+ <spacer name="verticalSpacer">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
<layout class="QHBoxLayout" name="titleLayout">
<item>
<spacer name="horizontalSpacer">
@@ -342,19 +355,6 @@
</layout>
</item>
<item>
- <spacer name="verticalSpacer">
- <property name="orientation">
- <enum>Qt::Vertical</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>20</width>
- <height>40</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
<layout class="QGridLayout" name="gridLayout_3">
<property name="bottomMargin">
<number>1</number>
diff --git a/sdk/applications/wizard/Main.cpp b/sdk/applications/wizard/Main.cpp
index 3829c00..6d307b9 100644
--- a/sdk/applications/wizard/Main.cpp
+++ b/sdk/applications/wizard/Main.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/applications/wizard/RemovableLineEditWidget.cpp b/sdk/applications/wizard/RemovableLineEditWidget.cpp
deleted file mode 100644
index a3c8f15..0000000
--- a/sdk/applications/wizard/RemovableLineEditWidget.cpp
+++ /dev/null
@@ -1,39 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// Include .h file
-#include "RemovableLineEditWidget.h"
-
-/** Constructor */
-RemovableLineEditWidget::RemovableLineEditWidget(QWidget * parent) : QWidget(parent) {
- ui.setupUi(this);
-}
-/** Destructor */
-RemovableLineEditWidget::~RemovableLineEditWidget() {}
-
-void RemovableLineEditWidget::remove() {
- emit removeLineEdit();
-}
-
diff --git a/sdk/applications/wizard/RemovableLineEditWidget.h b/sdk/applications/wizard/RemovableLineEditWidget.h
deleted file mode 100644
index f47cd2b..0000000
--- a/sdk/applications/wizard/RemovableLineEditWidget.h
+++ /dev/null
@@ -1,59 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-#ifndef REMOVABLELINEEDITWIDGET_H
-#define REMOVABLELINEEDITWIDGET_H
-
-// Include GUI automatically generated file
-#include "ui_RemovableLineEditWidget.h"
-
-// includes from Qt
-#include <QWidget>
-
-/**
- * @ingroup group_sdk_application_wizard
- *
- * @brief
- * TODO Celine please comment here.
- *
- */
-class RemovableLineEditWidget : public QWidget {
-
- Q_OBJECT;
-
-public:
- RemovableLineEditWidget(QWidget * parent);
- ~RemovableLineEditWidget();
-
-public slots:
- virtual void remove();
-
-signals:
- void removeLineEdit();
-
-private:
-
- Ui::RemovableLineEditWidget ui;
-};
-#endif
diff --git a/sdk/applications/wizard/RemovableLineEditWidget.ui b/sdk/applications/wizard/RemovableLineEditWidget.ui
deleted file mode 100644
index 437ad3d..0000000
--- a/sdk/applications/wizard/RemovableLineEditWidget.ui
+++ /dev/null
@@ -1,53 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>RemovableLineEditWidget</class>
- <widget class="QWidget" name="RemovableLineEditWidget">
- <property name="geometry">
- <rect>
- <x>0</x>
- <y>0</y>
- <width>497</width>
- <height>55</height>
- </rect>
- </property>
- <property name="windowTitle">
- <string>Form</string>
- </property>
- <layout class="QHBoxLayout" name="horizontalLayout">
- <item>
- <widget class="QLineEdit" name="lineEdit"/>
- </item>
- <item>
- <spacer name="horizontalSpacer">
- <property name="orientation">
- <enum>Qt::Horizontal</enum>
- </property>
- <property name="sizeHint" stdset="0">
- <size>
- <width>40</width>
- <height>20</height>
- </size>
- </property>
- </spacer>
- </item>
- <item>
- <widget class="QPushButton" name="pushButton_Remove">
- <property name="enabled">
- <bool>true</bool>
- </property>
- <property name="text">
- <string/>
- </property>
- <property name="icon">
- <iconset resource="../dorothyold/wizard.qrc">
- <normaloff>:/resources/edit_remove.png</normaloff>:/resources/edit_remove.png</iconset>
- </property>
- </widget>
- </item>
- </layout>
- </widget>
- <resources>
- <include location="../dorothyold/wizard.qrc"/>
- </resources>
- <connections/>
-</ui>
diff --git a/sdk/applications/wizard/WelcomeWidget.cpp b/sdk/applications/wizard/WelcomeWidget.cpp
index e58f781..3f3451e 100644
--- a/sdk/applications/wizard/WelcomeWidget.cpp
+++ b/sdk/applications/wizard/WelcomeWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,11 +26,11 @@
// Include .h file
#include "WelcomeWidget.h"
-/** Constructor */
+
WelcomeWidget::WelcomeWidget(QWidget * parent) : QWidget(parent) {
ui.setupUi(this);
}
-/** Destructor */
+
WelcomeWidget::~WelcomeWidget() {}
void WelcomeWidget::nextButtonClicked() {
diff --git a/sdk/applications/wizard/WelcomeWidget.h b/sdk/applications/wizard/WelcomeWidget.h
index e739112..ca534b6 100644
--- a/sdk/applications/wizard/WelcomeWidget.h
+++ b/sdk/applications/wizard/WelcomeWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,20 +30,16 @@
// includes from Qt
#include <QWidget>
-//#include "DorothyCentralWidget.h"
/**
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Class linked with welcome interface which allows user to choose what he wants to create ( action, component etc..)
*
*/
class WelcomeWidget : public QWidget {
- /*! \class WelcomeWindow
- * Class linked with welcome interface which allows user to choose what he want to create ( action, component etc..)
- *
- */
+
Q_OBJECT;
public:
diff --git a/sdk/applications/wizard/WizardController.cpp b/sdk/applications/wizard/WizardController.cpp
index 70dfc4c..a696d97 100644
--- a/sdk/applications/wizard/WizardController.cpp
+++ b/sdk/applications/wizard/WizardController.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,8 +23,6 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-/** CONTROLLER of the model*/
-
// Import .h file
#include "WizardController.h"
@@ -35,7 +33,7 @@
#include "WizardState.h"
// Include Widgets
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include "WelcomeWidget.h"
#include "CepCreateOrModifyWidget.h"
@@ -64,9 +62,10 @@
#include <iostream>
-/** Constructor: creation of all the interfaces and the connect */
+
WizardController::WizardController(void) {
- this->mainWindow = new DorothyMainWindow();
+
+ this->mainWindow = new WizardMainWindow();
devDirectoryName = "Hello World";
cepcoreschema::Contact c;
this->domCep = new cepcoreschema::Cep("CEP not yet defined...", c, "to be defined");
@@ -75,8 +74,9 @@ WizardController::WizardController(void) {
WelcomeWidget * welcomeWidget = new WelcomeWidget(NULL);
WizardState * welcomeState = new WizardState("Welcome", welcomeWidget, mainWindow);
// Create a new CEP or work on an existing one ?
- CepCreateOrModifyWidget * cepCreateOrModifyWidget = new CepCreateOrModifyWidget(NULL);
- WizardState * cepCreateOrModifyState = new WizardState("Create / Modify a CEP ?", cepCreateOrModifyWidget, mainWindow);
+ // CS: Release 5 Sprint 8 [3.5 Wizard] "modifier un CEP existant"
+ //CepCreateOrModifyWidget * cepCreateOrModifyWidget = new CepCreateOrModifyWidget(NULL);
+ //WizardState * cepCreateOrModifyState = new WizardState("Create / Modify a CEP ?", cepCreateOrModifyWidget, mainWindow);
// Create the state where to enter the directory for a cep creation
CepCreationDirectoryWidget * cepCreationDirectoryWidget = new CepCreationDirectoryWidget(NULL);
CepCreationDirectoryState * cepCreationDirectoryState = new CepCreationDirectoryState("Creation Directory", cepCreationDirectoryWidget, mainWindow, &devDirectoryName);
@@ -108,7 +108,8 @@ WizardController::WizardController(void) {
machine.addState(welcomeState);
- machine.addState(cepCreateOrModifyState);
+ // CS: Release 5 Sprint 8 [3.5 Wizard] "modifier un CEP existant" Remove this state
+ // machine.addState(cepCreateOrModifyState);
machine.addState(cepCreationDirectoryState);
machine.addState(cepDescriptionState);
machine.addState(cepContactState);
@@ -125,13 +126,17 @@ WizardController::WizardController(void) {
// Adding transitions...
machine.setInitialState(welcomeState);
- welcomeState->addTransition(welcomeWidget, SIGNAL(next()), cepCreateOrModifyState);
+ // CS: Release 5 Sprint 8 [3.5 Wizard] "modifier un CEP existant" link this state directly with the "choose directory state"
+ // welcomeState->addTransition(welcomeWidget, SIGNAL(next()), cepCreateOrModifyState);
+ welcomeState->addTransition(welcomeWidget, SIGNAL(next()), cepCreationDirectoryState);
- cepCreateOrModifyState->addTransition(cepCreateOrModifyWidget, SIGNAL(backCep()), welcomeState);
- cepCreateOrModifyState->addTransition(cepCreateOrModifyWidget, SIGNAL(newCep()), cepCreationDirectoryState);
+ // CS: Release 5 Sprint 8 [3.5 Wizard] "modifier un CEP existant"
+ //cepCreateOrModifyState->addTransition(cepCreateOrModifyWidget, SIGNAL(backCep()), welcomeState);
+ //cepCreateOrModifyState->addTransition(cepCreateOrModifyWidget, SIGNAL(newCep()), cepCreationDirectoryState);
-
- cepCreationDirectoryState->addTransition(cepCreationDirectoryWidget, SIGNAL(previous()), cepCreateOrModifyState);
+ // CS: Release 5 Sprint 8 [3.5 Wizard] "modifier un CEP existant"
+ //cepCreationDirectoryState->addTransition(cepCreationDirectoryWidget, SIGNAL(previous()), cepCreateOrModifyState);
+ cepCreationDirectoryState->addTransition(cepCreationDirectoryWidget, SIGNAL(previous()), welcomeState);
cepCreationDirectoryState->addTransition(cepCreationDirectoryWidget, SIGNAL(next()), cepDescriptionState);
cepDescriptionState->addTransition(cepDescriptionWidget, SIGNAL(previous()), cepCreationDirectoryState);
@@ -157,10 +162,12 @@ WizardController::WizardController(void) {
}
-/** Destructor of the Controller */
-WizardController::~WizardController(void) {}
+WizardController::~WizardController(void) {
+ delete domCep;
+ delete mainWindow;
+}
+
-/** Method to start */
void WizardController::launch() {
machine.start();
mainWindow->show();
diff --git a/sdk/applications/wizard/WizardController.h b/sdk/applications/wizard/WizardController.h
index b4ca3f4..d04a681 100644
--- a/sdk/applications/wizard/WizardController.h
+++ b/sdk/applications/wizard/WizardController.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,7 +28,7 @@
// Import from Qt
#include <QStateMachine>
-class DorothyMainWindow;
+class WizardMainWindow;
// Dependency from cepcoreschema
// Declaration here to avoid declaration in dependant projects.
@@ -40,29 +40,33 @@ class Cep;
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Controller class, based on MVP architecture.
+ *
+ * The wizard is constructed on a state machine. \n
+ * Each state is created in the constructor of this class and is connected with others trought this controller. \n
+ * Moreover, this class creates the XML DOM document to generate the corresponding CEP. \n
*
*/
class WizardController {
- /*! \class WizardController
- * Controller class, based on MVP architecture
- *
- */
public:
+ /** Constructor: creation of all the interfaces and the connections */
WizardController(void);
+
+ /** Destructor of the Controller */
~WizardController(void);
+
+ /** Method to start */
void launch();
private:
QStateMachine machine;
- DorothyMainWindow * mainWindow;
+ WizardMainWindow * mainWindow;
/**
- XML DOM Element create by CodeSynthesis
+ XML DOM Element create by CodeSynthesis.
This cep instance contains all of the informations of the xml file
*/
-
cepcoreschema::Cep * domCep;
QString devDirectoryName;
diff --git a/sdk/applications/wizard/WizardMainWindow.cpp b/sdk/applications/wizard/WizardMainWindow.cpp
new file mode 100644
index 0000000..9c73227
--- /dev/null
+++ b/sdk/applications/wizard/WizardMainWindow.cpp
@@ -0,0 +1,88 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// Include .h file
+#include "WizardMainWindow.h"
+
+// includes from QT
+#include <QUrl>
+#include <QDesktopServices>
+#include <QPalette>
+#include <QPixmap>
+#include <QFile>
+
+#include <iostream>
+
+
+WizardMainWindow::WizardMainWindow() : QMainWindow(NULL) {
+
+ ui.setupUi(this);
+
+ QFile stylesheetFile(":/resources/stylesheet.qss");
+ stylesheetFile.open(QFile::ReadOnly);
+ QString styleSheet = QString(stylesheetFile.readAll());
+ ui.centralwidget->setStyleSheet(styleSheet);
+
+ widgetStack = new QStackedWidget();
+ widgetStack->setFrameStyle(QFrame::StyledPanel | QFrame::Sunken);
+ widgetStack->setLineWidth(3);
+ // insert empty widget to fill the space by default
+ emptyWidgetIndex = widgetStack->addWidget(new QWidget());
+ // add widget stack to layout.
+ ui.mainLayout->addWidget(widgetStack);
+
+ // CONNECT
+ //WelcomeWindow
+ QObject::connect(ui.helpPushButton , SIGNAL(clicked()), this, SLOT(welcomeHelp()));
+}
+
+
+WizardMainWindow::~WizardMainWindow() {}
+
+// Welcome buttons
+/** When button Help of WelcomeWindow interface is clicked, the wiki page "New interfaces of Wizard" opens */
+void WizardMainWindow::welcomeHelp() {
+ QUrl helpUrl("https://forge.imag.fr/plugins/mediawiki/wiki/camitk/index.php/New_interfaces_of_Wizard");
+ QDesktopServices::openUrl(helpUrl);
+}
+
+
+void WizardMainWindow::setCentralWidget(QWidget * widget) {
+ //-- check history
+ int widgetIndex = widgetStack->indexOf(widget);
+
+ if (widgetIndex == -1 && widget) {
+ // add the widget (beware that actionWidgetStack then takes ownership of the widget!)
+ widgetIndex = widgetStack->addWidget(widget);
+ }
+
+ widgetStack->setCurrentIndex(widgetIndex);
+
+ widgetStack->update();
+}
+
+void WizardMainWindow::setStateInfo(QString info) {
+// ui.currentStateLabel->setText(info);
+}
diff --git a/sdk/applications/wizard/WizardMainWindow.h b/sdk/applications/wizard/WizardMainWindow.h
new file mode 100644
index 0000000..8a912b7
--- /dev/null
+++ b/sdk/applications/wizard/WizardMainWindow.h
@@ -0,0 +1,72 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+#ifndef WizardMainWindow_H
+#define WizardMainWindow_H
+
+// Include GUI automatically generated file
+#include "ui_WizardMainWindow.h"
+
+// includes from Qt
+#include <QStackedWidget>
+
+// to debug
+#include <qdebug.h>
+
+class QPixmap;
+class QPalette;
+
+/**
+ * @ingroup group_sdk_application_wizard
+ *
+ * @brief
+ * The main window of the Wizard. All state widgets are contained in this window.
+ *
+ */
+class WizardMainWindow : public QMainWindow {
+ Q_OBJECT;
+
+public:
+ /** Constructor */
+ WizardMainWindow();
+ /** Destructor */
+ ~WizardMainWindow();
+
+ void setCentralWidget(QWidget * widget);
+ void setStateInfo(QString info);
+
+public slots:
+ virtual void welcomeHelp();
+
+
+private:
+ QStackedWidget * widgetStack;
+ /// index of the empty widget,
+ /// used when no state is active
+ int emptyWidgetIndex;
+
+ Ui::WizardMainWindow ui;
+
+};
+#endif
diff --git a/sdk/applications/wizard/WizardMainWindow.ui b/sdk/applications/wizard/WizardMainWindow.ui
new file mode 100644
index 0000000..b928a23
--- /dev/null
+++ b/sdk/applications/wizard/WizardMainWindow.ui
@@ -0,0 +1,250 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>WizardMainWindow</class>
+ <widget class="QMainWindow" name="WizardMainWindow">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>1024</width>
+ <height>768</height>
+ </rect>
+ </property>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="MinimumExpanding" vsizetype="MinimumExpanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>800</width>
+ <height>600</height>
+ </size>
+ </property>
+ <property name="windowTitle">
+ <string>CamiTK-Wizard</string>
+ </property>
+ <property name="windowIcon">
+ <iconset resource="wizard.qrc">
+ <normaloff>:/resources/implogo.png</normaloff>:/resources/implogo.png</iconset>
+ </property>
+ <property name="styleSheet">
+ <string notr="true"/>
+ </property>
+ <property name="iconSize">
+ <size>
+ <width>64</width>
+ <height>64</height>
+ </size>
+ </property>
+ <widget class="QWidget" name="centralwidget">
+ <property name="styleSheet">
+ <string notr="true"/>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout">
+ <item>
+ <widget class="QFrame" name="logosFrame">
+ <property name="frameShape">
+ <enum>QFrame::StyledPanel</enum>
+ </property>
+ <property name="frameShadow">
+ <enum>QFrame::Raised</enum>
+ </property>
+ <layout class="QHBoxLayout" name="horizontalLayout">
+ <item>
+ <widget class="QLabel" name="ujfLogoLabel">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Maximum" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>64</width>
+ <height>64</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>64</width>
+ <height>64</height>
+ </size>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="pixmap">
+ <pixmap resource="wizard.qrc">:/resources/ujf-small.png</pixmap>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="logosHSpacer02">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QLabel" name="camitkLogoLabel">
+ <property name="minimumSize">
+ <size>
+ <width>64</width>
+ <height>32</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>128</width>
+ <height>64</height>
+ </size>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ <property name="pixmap">
+ <pixmap resource="wizard.qrc">:/resources/CEP-logo.png</pixmap>
+ </property>
+ <property name="scaledContents">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="logosHSpacer01">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="helpPushButton">
+ <property name="minimumSize">
+ <size>
+ <width>32</width>
+ <height>32</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>128</width>
+ <height>32</height>
+ </size>
+ </property>
+ <property name="cursor">
+ <cursorShape>WhatsThisCursor</cursorShape>
+ </property>
+ <property name="text">
+ <string>Help</string>
+ </property>
+ <property name="icon">
+ <iconset resource="wizard.qrc">
+ <normaloff>:/resources/ktip.png</normaloff>:/resources/ktip.png</iconset>
+ </property>
+ <property name="iconSize">
+ <size>
+ <width>16</width>
+ <height>16</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <widget class="Line" name="LogosLine">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QScrollArea" name="mainScrollArea">
+ <property name="styleSheet">
+ <string notr="true"/>
+ </property>
+ <property name="widgetResizable">
+ <bool>true</bool>
+ </property>
+ <widget class="QWidget" name="scrollAreaWidgetContents">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>1010</width>
+ <height>637</height>
+ </rect>
+ </property>
+ <property name="styleSheet">
+ <string notr="true"/>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <spacer name="BottomVSpacer">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="mainLayout"/>
+ </item>
+ <item>
+ <spacer name="LogosVSpacer">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ </item>
+ <item>
+ <widget class="Line" name="BottomLine">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QStatusBar" name="statusbar"/>
+ </widget>
+ <resources>
+ <include location="wizard.qrc"/>
+ </resources>
+ <connections/>
+ <slots>
+ <slot>pushButtonHelpClicked()</slot>
+ <slot>pushButtonStartClicked()</slot>
+ <slot>labelXMLClicked()</slot>
+ </slots>
+</ui>
diff --git a/sdk/applications/wizard/WizardState.cpp b/sdk/applications/wizard/WizardState.cpp
index 8900c47..adff044 100644
--- a/sdk/applications/wizard/WizardState.cpp
+++ b/sdk/applications/wizard/WizardState.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,24 +26,23 @@
// Include .h file
#include "WizardState.h"
-#include "DorothyMainWindow.h"
+#include "WizardMainWindow.h"
#include <iostream>
-/** Constructor */
-WizardState::WizardState(QString name, QWidget * widget, DorothyMainWindow * mainWindow) : QState() {
+
+WizardState::WizardState(QString name, QWidget * widget, WizardMainWindow * mainWindow) : QState() {
this->name = name;
this->widget = widget;
this->mainWindow = mainWindow;
}
-WizardState::WizardState(QString name, QWidget * widget, DorothyMainWindow * mainWindow, QState * parent) : QState(parent) {
+WizardState::WizardState(QString name, QWidget * widget, WizardMainWindow * mainWindow, QState * parent) : QState(parent) {
this->name = name;
this->widget = widget;
this->mainWindow = mainWindow;
}
-/** Destructor */
WizardState::~WizardState() {}
QString WizardState::getName() {
diff --git a/sdk/applications/wizard/WizardState.h b/sdk/applications/wizard/WizardState.h
index c0da031..0fe5af7 100644
--- a/sdk/applications/wizard/WizardState.h
+++ b/sdk/applications/wizard/WizardState.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2012 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,13 +28,16 @@
#include <QState>
#include <QWidget>
-class DorothyMainWindow;
+class WizardMainWindow;
/**
* @ingroup group_sdk_application_wizard
*
* @brief
- * TODO Celine please comment here.
+ * Generic state of the wizard.
+ *
+ * Inherited from QState. \n
+ * A state is defined by its name, its widget and its mainWindow. It can be linked too to a state parent.
*
*/
class WizardState : public QState {
@@ -42,8 +45,11 @@ class WizardState : public QState {
Q_OBJECT;
public:
- WizardState(QString name, QWidget * widget, DorothyMainWindow * mainWidnow);
- WizardState(QString name, QWidget * widget, DorothyMainWindow * mainWidnow, QState * parent);
+ /** Constructor */
+ WizardState(QString name, QWidget * widget, WizardMainWindow * mainWidnow);
+ /** Constructor */
+ WizardState(QString name, QWidget * widget, WizardMainWindow * mainWidnow, QState * parent);
+ /** Destructor */
~WizardState();
QWidget * getWidget();
@@ -59,6 +65,6 @@ protected:
QString name;
QWidget * widget;
- DorothyMainWindow * mainWindow;
+ WizardMainWindow * mainWindow;
};
#endif
diff --git a/sdk/applications/wizard/resources/Thumbs.db b/sdk/applications/wizard/resources/Thumbs.db
deleted file mode 100644
index beaa76b..0000000
Binary files a/sdk/applications/wizard/resources/Thumbs.db and /dev/null differ
diff --git a/sdk/applications/wizard/resources/action.xcf b/sdk/applications/wizard/resources/action.xcf
deleted file mode 100644
index 52fff04..0000000
Binary files a/sdk/applications/wizard/resources/action.xcf and /dev/null differ
diff --git a/sdk/applications/wizard/resources/action2.xcf b/sdk/applications/wizard/resources/action2.xcf
deleted file mode 100644
index 1a1bd8a..0000000
Binary files a/sdk/applications/wizard/resources/action2.xcf and /dev/null differ
diff --git a/sdk/applications/wizard/resources/actionOld.png b/sdk/applications/wizard/resources/actionOld.png
deleted file mode 100644
index 7ca2383..0000000
Binary files a/sdk/applications/wizard/resources/actionOld.png and /dev/null differ
diff --git a/sdk/applications/wizard/resources/appli.xcf b/sdk/applications/wizard/resources/appli.xcf
deleted file mode 100644
index cb8a49a..0000000
Binary files a/sdk/applications/wizard/resources/appli.xcf and /dev/null differ
diff --git a/sdk/applications/wizard/resources/appli_old.png b/sdk/applications/wizard/resources/appli_old.png
deleted file mode 100644
index 940dcb3..0000000
Binary files a/sdk/applications/wizard/resources/appli_old.png and /dev/null differ
diff --git a/sdk/applications/wizard/resources/camera.png b/sdk/applications/wizard/resources/camera.png
deleted file mode 100644
index 4b85664..0000000
Binary files a/sdk/applications/wizard/resources/camera.png and /dev/null differ
diff --git a/sdk/applications/wizard/resources/camitk-wizard.xcf b/sdk/applications/wizard/resources/camitk-wizard.xcf
deleted file mode 100644
index 611d9a0..0000000
Binary files a/sdk/applications/wizard/resources/camitk-wizard.xcf and /dev/null differ
diff --git a/sdk/applications/wizard/resources/camitk-wizard.xpm b/sdk/applications/wizard/resources/camitk-wizard.xpm
deleted file mode 100644
index 7298599..0000000
--- a/sdk/applications/wizard/resources/camitk-wizard.xpm
+++ /dev/null
@@ -1,4143 +0,0 @@
-/* XPM */
-static char * camitk_wizard_xpm[] = {
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-" c None",
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-" c,A'I2I'y!['w>w>Y;U||}e]|}e]R/3]x|['y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A't>y)_/<'{/6!6!b,[2d,U|Y;X-B!H}p!0!&,2.2.2.2. ",
-" b;_)K'`!f~N,w>w>]1b;P^e]P^e]F}R/3]A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'X-O,['{/6!x|3]N,e]|^Y;6!@!I'N]@!c,2.2.2. ",
-" :'B!I25!_)P^c,Q||'J2U|P^b;|}d,F}3]A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'O,K2['{/]/b,:'e}e](}Y;N,7!^{]~(|P^2.2.2. ",
-" X-`!]~q~G'|'c,L2|'Y;b;b;Y;|}d,d,R/A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'O,['t2]/R/3][2F}A2(}Y;P^G'B!H}o]['2.2. ",
-" 2.G'L{L{B!y)w>c,w>|'|'Y;Y;]1U|e]`]R/A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'<'6!6!3]d,N,R/F}A2(}_}_}}/f~`!I':)2.2. ",
-" c,D'o!`!@!6!c,c,c,w>|'|'M2|'8|P^e]R/A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'<'b,]/N,e]d,d,l]D2N2|'O26!D's{I'_)1'2. ",
-" P^f~o!H!0!e]c;2'c,w>|'|'Q||'Y;P^|}R/A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'P1]/:'d,A2P^e]A2U|Y;|'w>d,:)f~5!B!b;2. ",
-" 6!V;I'y!t>|'c;2'm]Q|w>w>Q|M2Y;P^e]R/A{y)G'~(P,H!I'=]/~B{8'f>(!3,V>G-~-r=Y*h=M>32W(8&52>162-172d292L1;2<2L1,2 at 2O1%1s1|!u181i101a1B^{|!1Z*}!{1z-f'G;m!S,0)O|Q,P|o]E~@^A'C'P1]/:'d,A2(}P^P^N2_}|'c,N2X-7!s{(|['2. ",
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diff --git a/sdk/applications/wizard/resources/component.xcf b/sdk/applications/wizard/resources/component.xcf
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diff --git a/sdk/applications/wizard/resources/componentOld.png b/sdk/applications/wizard/resources/componentOld.png
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index 6b556eb..0000000
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diff --git a/sdk/applications/wizard/resources/extlib_bas.png b/sdk/applications/wizard/resources/extlib_bas.png
deleted file mode 100644
index 583261b..0000000
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diff --git a/sdk/applications/wizard/resources/impDevOld.png b/sdk/applications/wizard/resources/impDevOld.png
deleted file mode 100644
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diff --git a/sdk/applications/wizard/resources/impDev_old.png b/sdk/applications/wizard/resources/impDev_old.png
deleted file mode 100644
index dc54237..0000000
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diff --git a/sdk/applications/wizard/resources/impExpert_old.png b/sdk/applications/wizard/resources/impExpert_old.png
deleted file mode 100644
index 4890bc6..0000000
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diff --git a/sdk/applications/wizard/resources/impNewbieOld.png b/sdk/applications/wizard/resources/impNewbieOld.png
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index 67ec9ae..0000000
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diff --git a/sdk/applications/wizard/resources/impNewbie_old.png b/sdk/applications/wizard/resources/impNewbie_old.png
deleted file mode 100644
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diff --git a/sdk/applications/wizard/resources/implogo_old.png b/sdk/applications/wizard/resources/implogo_old.png
deleted file mode 100644
index 2920c51..0000000
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diff --git a/sdk/applications/wizard/resources/reminders.png b/sdk/applications/wizard/resources/reminders.png
deleted file mode 100644
index 2b2f2aa..0000000
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diff --git a/sdk/applications/wizard/resources/retry.png b/sdk/applications/wizard/resources/retry.png
deleted file mode 100644
index 6f864a3..0000000
Binary files a/sdk/applications/wizard/resources/retry.png and /dev/null differ
diff --git a/sdk/applications/wizard/resources/translate/translate_en.ts b/sdk/applications/wizard/resources/translate/translate_en.ts
index 0ddea64..4e015e0 100644
--- a/sdk/applications/wizard/resources/translate/translate_en.ts
+++ b/sdk/applications/wizard/resources/translate/translate_en.ts
@@ -69,13 +69,13 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionAddParameterWidget.ui" line="628"/>
- <source>Action input parameters</source>
+ <location filename="../../ActionAddParameterWidget.ui" line="650"/>
+ <source><html><head/><body><p>These are the parameters you will enter to apply your action.</p></body></html></source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionAddParameterWidget.ui" line="650"/>
- <source><html><head/><body><p>These are the parameters you will enter to apply your action.</p></body></html></source>
+ <location filename="../../ActionAddParameterWidget.ui" line="628"/>
+ <source>Action input parameters</source>
<translation type="unfinished"></translation>
</message>
<message>
@@ -295,57 +295,57 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="747"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="747"/>
<source>ITK Filter ?</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="759"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="759"/>
<source>Output Image Type</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="775"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="775"/>
<source>Same as Input</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="780"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="780"/>
<source>unsigned char</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="785"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="785"/>
<source>char</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="790"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="790"/>
<source>unsigned short</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="795"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="795"/>
<source>short</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="800"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="800"/>
<source>unsigned int</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="805"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="805"/>
<source>int</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="810"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="810"/>
<source>long</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="815"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="815"/>
<source>double</source>
<translation type="unfinished"></translation>
</message>
@@ -440,8 +440,8 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="407"/>
- <source>Action Extension's Description</source>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="407"/>
+ <source>Description</source>
<translation type="unfinished"></translation>
</message>
<message>
@@ -450,14 +450,14 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="508"/>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="530"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="508"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="530"/>
<source>*</source>
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="546"/>
- <source> Action Extension's Name</source>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="546"/>
+ <source>Name</source>
<translation type="unfinished"></translation>
</message>
<message>
@@ -682,11 +682,6 @@
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionSummaryWidget.ui" line="515"/>
- <source>Test</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
<location filename="../../ActionSummaryWidget.ui" line="542"/>
<source>Previous</source>
<translation type="unfinished"></translation>
@@ -963,12 +958,6 @@ p, li { white-space: pre-wrap; }
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../CepCreateRecapWidget.ui" line="82"/>
- <location filename="../../CepCreateRecapWidget.ui" line="105"/>
- <source>TextLabel</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
<location filename="../../CepCreateRecapWidget.ui" line="119"/>
<source>CEP Properties</source>
<translation type="unfinished"></translation>
@@ -1651,11 +1640,6 @@ p, li { white-space: pre-wrap; }
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ComponentSummaryWidget.ui" line="478"/>
- <source>Test</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
<location filename="../../ComponentSummaryWidget.ui" line="505"/>
<source>Previous</source>
<translation type="unfinished"></translation>
@@ -1929,19 +1913,6 @@ p, li { white-space: pre-wrap; }
</message>
</context>
<context>
- <name>DorothyMainWindow</name>
- <message>
- <location filename="../../DorothyMainWindow.ui" line="26"/>
- <source>CamiTK-Wizard</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
- <location filename="../../DorothyMainWindow.ui" line="152"/>
- <source>Help</source>
- <translation type="unfinished"></translation>
- </message>
-</context>
-<context>
<name>ExtensionSummaryWidget</name>
<message>
<location filename="../../ExtensionSummaryWidget.ui" line="14"/>
@@ -2017,11 +1988,6 @@ p, li { white-space: pre-wrap; }
<translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../GeneratingCEPWidget.ui" line="47"/>
- <source>TextLabel</source>
- <translation type="unfinished"></translation>
- </message>
- <message>
<location filename="../../GeneratingCEPWidget.ui" line="87"/>
<source>Ok</source>
<translation type="unfinished"></translation>
@@ -2200,14 +2166,6 @@ p, li { white-space: pre-wrap; }
</message>
</context>
<context>
- <name>RemovableLineEditWidget</name>
- <message>
- <location filename="../../RemovableLineEditWidget.ui" line="14"/>
- <source>Form</source>
- <translation type="unfinished"></translation>
- </message>
-</context>
-<context>
<name>WelcomeWidget</name>
<message>
<location filename="../../WelcomeWidget.ui" line="26"/>
@@ -2235,4 +2193,43 @@ p, li { white-space: pre-wrap; }
<translation type="unfinished"></translation>
</message>
</context>
+<context>
+ <name>WizardMainWindow</name>
+ <message>
+ <location filename="../../../../src/sdk/applications/wizard/WizardMainWindow.ui" line="26"/>
+ <source>CamiTK-Wizard</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/applications/wizard/WizardMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../../../Dev/CamiTK/camitk/sdk/applications/wizard/WizardMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>RemovableLineEditWidget</name>
+ <message>
+ <location filename="../../RemovableLineEditWidget.ui" line="14"/>
+ <source>Form</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>DorothyMainWindow</name>
+ <message>
+ <location filename="../../DorothyMainWindow.ui" line="26"/>
+ <source>CamiTK-Wizard</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../DorothyMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
</TS>
diff --git a/sdk/applications/wizard/resources/translate/translate_fr.ts b/sdk/applications/wizard/resources/translate/translate_fr.ts
index 5b0076d..aa8bea8 100644
--- a/sdk/applications/wizard/resources/translate/translate_fr.ts
+++ b/sdk/applications/wizard/resources/translate/translate_fr.ts
@@ -69,16 +69,16 @@
<translation></translation>
</message>
<message>
- <location filename="../../ActionAddParameterWidget.ui" line="628"/>
- <source>Action input parameters</source>
- <translation>paramètres d'entrée d'une Action</translation>
- </message>
- <message>
<location filename="../../ActionAddParameterWidget.ui" line="650"/>
<source><html><head/><body><p>These are the parameters you will enter to apply your action.</p></body></html></source>
<translation><html><head/><body><p>Ceux sont les paramètres que vous entrerez pour appliquer votre action.</p></body></html></translation>
</message>
<message>
+ <location filename="../../ActionAddParameterWidget.ui" line="628"/>
+ <source>Action input parameters</source>
+ <translation>paramètres d'entrée d'une Action</translation>
+ </message>
+ <message>
<location filename="../../ActionAddParameterWidget.ui" line="685"/>
<source>Add a Parameter</source>
<translation>Ajouter un paramètre</translation>
@@ -295,59 +295,59 @@
<translation><html><head/><body><p>Donner une description précise de ce que votre action fera.</p></body></html></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="747"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="747"/>
<source>ITK Filter ?</source>
- <translation>Filtre ITK ?</translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="759"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="759"/>
<source>Output Image Type</source>
- <translation>Type de L'image en Sortie</translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="775"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="775"/>
<source>Same as Input</source>
- <translation>Identique à l'Entrée</translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="780"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="780"/>
<source>unsigned char</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="785"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="785"/>
<source>char</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="790"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="790"/>
<source>unsigned short</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="795"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="795"/>
<source>short</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="800"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="800"/>
<source>unsigned int</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="805"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="805"/>
<source>int</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="810"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="810"/>
<source>long</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionDescriptionWidget.ui" line="815"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionDescriptionWidget.ui" line="815"/>
<source>double</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
<location filename="../../ActionDescriptionWidget.ui" line="831"/>
@@ -440,9 +440,9 @@
<translation><html><head/><body><p><span style=" font-size:14pt; font-weight:600;">Créer votre Action Extension</span></p></body></html></translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="407"/>
- <source>Action Extension's Description</source>
- <translation>Description de l'Action Extension</translation>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="407"/>
+ <source>Description</source>
+ <translation type="unfinished"></translation>
</message>
<message>
<location filename="../../ActionExtensionDescriptionWidget.ui" line="429"/>
@@ -450,15 +450,15 @@
<translation><html><head/><body><p>Donner un nom explicite à votre action-extension. Le nom peut correspondre à l'ensemble des opérations réalisées par l'extension.</p></body></html> </translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="508"/>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="530"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="508"/>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="530"/>
<source>*</source>
- <translation></translation>
+ <translation type="unfinished"></translation>
</message>
<message>
- <location filename="../../ActionExtensionDescriptionWidget.ui" line="546"/>
- <source> Action Extension's Name</source>
- <translation>Nom de Action Extension</translation>
+ <location filename="../../../../src/sdk/applications/wizard/ActionExtensionDescriptionWidget.ui" line="546"/>
+ <source>Name</source>
+ <translation type="unfinished"></translation>
</message>
<message>
<location filename="../../ActionExtensionDescriptionWidget.ui" line="567"/>
@@ -683,11 +683,6 @@
<translation></translation>
</message>
<message>
- <location filename="../../ActionSummaryWidget.ui" line="515"/>
- <source>Test</source>
- <translation></translation>
- </message>
- <message>
<location filename="../../ActionSummaryWidget.ui" line="542"/>
<source>Previous</source>
<translation>Précédent</translation>
@@ -964,12 +959,6 @@ p, li { white-space: pre-wrap; }
<translation></translation>
</message>
<message>
- <location filename="../../CepCreateRecapWidget.ui" line="82"/>
- <location filename="../../CepCreateRecapWidget.ui" line="105"/>
- <source>TextLabel</source>
- <translation>Label du Text</translation>
- </message>
- <message>
<location filename="../../CepCreateRecapWidget.ui" line="119"/>
<source>CEP Properties</source>
<translation>Propriété du CEP</translation>
@@ -1662,11 +1651,6 @@ p, li { white-space: pre-wrap; }
<translation>Propriété(s)</translation>
</message>
<message>
- <location filename="../../ComponentSummaryWidget.ui" line="478"/>
- <source>Test</source>
- <translation></translation>
- </message>
- <message>
<location filename="../../ComponentSummaryWidget.ui" line="505"/>
<source>Previous</source>
<translation>Précédent</translation>
@@ -1940,19 +1924,6 @@ p, li { white-space: pre-wrap; }
</message>
</context>
<context>
- <name>DorothyMainWindow</name>
- <message>
- <location filename="../../DorothyMainWindow.ui" line="26"/>
- <source>CamiTK-Wizard</source>
- <translation></translation>
- </message>
- <message>
- <location filename="../../DorothyMainWindow.ui" line="152"/>
- <source>Help</source>
- <translation>Aide</translation>
- </message>
-</context>
-<context>
<name>ExtensionSummaryWidget</name>
<message>
<location filename="../../ExtensionSummaryWidget.ui" line="14"/>
@@ -2028,11 +1999,6 @@ p, li { white-space: pre-wrap; }
<translation>Génération du CEP suivant:</translation>
</message>
<message>
- <location filename="../../GeneratingCEPWidget.ui" line="47"/>
- <source>TextLabel</source>
- <translation>Label du Texte</translation>
- </message>
- <message>
<location filename="../../GeneratingCEPWidget.ui" line="87"/>
<source>Ok</source>
<translation></translation>
@@ -2211,14 +2177,6 @@ p, li { white-space: pre-wrap; }
</message>
</context>
<context>
- <name>RemovableLineEditWidget</name>
- <message>
- <location filename="../../RemovableLineEditWidget.ui" line="14"/>
- <source>Form</source>
- <translation>Formulaire</translation>
- </message>
-</context>
-<context>
<name>WelcomeWidget</name>
<message>
<location filename="../../WelcomeWidget.ui" line="26"/>
@@ -2246,4 +2204,43 @@ p, li { white-space: pre-wrap; }
<translation>* Si vous voulez travailler à partir d'un fichier XML existant, l'application dont vous avez besoin est <tt>camitk-cepgenerator</tt>, et pas celle-ci...</translation>
</message>
</context>
+<context>
+ <name>WizardMainWindow</name>
+ <message>
+ <location filename="../../../../src/sdk/applications/wizard/WizardMainWindow.ui" line="26"/>
+ <source>CamiTK-Wizard</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../src/sdk/applications/wizard/WizardMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation type="unfinished"></translation>
+ </message>
+ <message>
+ <location filename="../../../../../../../Dev/CamiTK/camitk/sdk/applications/wizard/WizardMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation type="unfinished"></translation>
+ </message>
+</context>
+<context>
+ <name>RemovableLineEditWidget</name>
+ <message>
+ <location filename="../../RemovableLineEditWidget.ui" line="14"/>
+ <source>Form</source>
+ <translation>Formulaire</translation>
+ </message>
+</context>
+<context>
+ <name>DorothyMainWindow</name>
+ <message>
+ <location filename="../../DorothyMainWindow.ui" line="26"/>
+ <source>CamiTK-Wizard</source>
+ <translation></translation>
+ </message>
+ <message>
+ <location filename="../../DorothyMainWindow.ui" line="152"/>
+ <source>Help</source>
+ <translation>Aide</translation>
+ </message>
+</context>
</TS>
diff --git a/sdk/applications/wizard/resources/ujf-small.jpg b/sdk/applications/wizard/resources/ujf-small.jpg
deleted file mode 100644
index 1a92882..0000000
Binary files a/sdk/applications/wizard/resources/ujf-small.jpg and /dev/null differ
diff --git a/sdk/applications/wizard/resources/viewer.xcf b/sdk/applications/wizard/resources/viewer.xcf
deleted file mode 100644
index 6502c49..0000000
Binary files a/sdk/applications/wizard/resources/viewer.xcf and /dev/null differ
diff --git a/sdk/applications/wizard/resources/viewerOld.png b/sdk/applications/wizard/resources/viewerOld.png
deleted file mode 100644
index 654da6d..0000000
Binary files a/sdk/applications/wizard/resources/viewerOld.png and /dev/null differ
diff --git a/sdk/cmake/CMakeLists.txt b/sdk/cmake/CMakeLists.txt
index 7ef5d01..c2e2c9a 100644
--- a/sdk/cmake/CMakeLists.txt
+++ b/sdk/cmake/CMakeLists.txt
@@ -6,35 +6,21 @@ set(CAMITK_CMAKE_PATH "share/${CAMITK_SHORT_VERSION_STRING}/cmake")
# install CamiTK configuration file
install(FILES ${CMAKE_BINARY_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cmake/CamiTKConfig.cmake
DESTINATION ${CAMITK_CMAKE_PATH}
- # COMPONENT cmake-modules)
)
# install the generic cmake files
file(GLOB CAMITK_CMAKE_FILES "modules/*.cmake")
install(FILES ${CAMITK_CMAKE_FILES}
DESTINATION ${CAMITK_CMAKE_PATH}
- # COMPONENT cmake-modules)
)
-
+
# install the macros
-file(GLOB CAMITK_CMAKE_FILES "modules/macros/*.cmake")
-install(FILES ${CAMITK_CMAKE_FILES}
- DESTINATION ${CAMITK_CMAKE_PATH}/macros
- # COMPONENT cmake-modules)
+install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/modules/macros
+ DESTINATION ${CAMITK_CMAKE_PATH}
)
# install launcher-templates
file(GLOB CAMITK_CMAKE_FILES "modules/launcher-templates/*.in")
install(FILES ${CAMITK_CMAKE_FILES}
DESTINATION ${CAMITK_CMAKE_PATH}/launcher-templates
- # COMPONENT cmake-modules)
- )
-
-# Save the compiler settings so another project can import them.
-include(${CMAKE_ROOT}/Modules/CMakeExportBuildSettings.cmake)
-cmake_export_build_settings(${CMAKE_CURRENT_BINARY_DIR}/../CamiTKBuildSettings.cmake)
-install(FILES "${CMAKE_CURRENT_BINARY_DIR}/../CamiTKBuildSettings.cmake"
- DESTINATION ${CAMITK_CMAKE_PATH}
- # COMPONENT cmake-modules)
)
-
\ No newline at end of file
diff --git a/sdk/cmake/modules/CamiTKConfig.cmake.in b/sdk/cmake/modules/CamiTKConfig.cmake.in
index 5a6acb4..14f3807 100644
--- a/sdk/cmake/modules/CamiTKConfig.cmake.in
+++ b/sdk/cmake/modules/CamiTKConfig.cmake.in
@@ -15,24 +15,29 @@ set(CAMITK_VERSION_MINOR "@CAMITK_VERSION_MINOR@")
set(CAMITK_SHORT_VERSION_STRING "camitk-${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}")
#-- Check dependencies: Qt and VTK
-find_package(Qt4 "4.7" COMPONENTS QtCore QtGui QtXml QtXmlPatterns REQUIRED)
-if(NOT QT4_FOUND)
- message(SEND_ERROR "Failed to find Qt 4.7 or greater. This is needed by CamiTK.")
+# List of Qt5 modules that are required in CamiTK
+set(CAMITK_QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+# Find Qt5
+find_package(Qt5 COMPONENTS ${CAMITK_QT_COMPONENTS} REQUIRED)
+if (Qt5_FOUND)
+ message(STATUS "CamiTK SDK : found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+else()
+ message(SEND_ERROR "CamiTK SDK : Failed to find Qt 5.x. This is needed by the CamiTK SDK.")
endif()
-set (QT_USE_QTXML ON)
-include(${QT_USE_FILE})
-
# Find VTK
find_package(VTK REQUIRED)
if(NOT VTK_FOUND)
- message(SEND_ERROR "Failed to find Vtk 5.8 or greater. This is needed by CamiTK.")
+ message(SEND_ERROR "Failed to find Vtk 6.0.0 or greater. This is needed by CamiTK.")
endif()
-if("${VTK_VERSION}" VERSION_LESS 5.8)
- message(FATAL_ERROR "Found VTK ${VTK_VERSION} version but at least 5.8 is required. Please update your version of VTK.")
+if("${VTK_VERSION}" VERSION_LESS 6.0)
+ message(FATAL_ERROR "Found VTK ${VTK_VERSION} version but at least 6.0.0 is required. Please update your version of VTK.")
endif()
-message(STATUS "Found suitable version of VTK : ${VTK_VERSION} (required is at least 5.8.0)")
-include(${VTK_USE_FILE})
+message(STATUS "Found suitable version of VTK : ${VTK_VERSION} (required is at least 6.0.0)")
+set(CAMITK_VTK_VERSION ${VTK_VERSION_MAJOR}.${VTK_VERSION_MINOR})
+include(${VTK_USE_FILE}) # This automatically set the include dirs (remain the link_directories and target_link_libraries)
+set(VTK_LIBRARY_DIR ${VTK_DIR}/../..)
#-- CAMITK_DIR variable
set(CAMITK_BIN_DIR ${CAMITK_DIR}/bin )
@@ -120,7 +125,7 @@ set(CAMITK_INCLUDE_DIRECTORIES
${CAMITK_INCLUDE_DIR}/libraries/${CAMITK_CORE_LIB_NAME}
${CAMITK_USER_INCLUDE_DIR}
${CAMITK_BUILD_INCLUDE_DIR}
- ${QT_INCLUDE_DIR}
+ ${QT_INCLUDE_DIRS}
${VTK_INCLUDE_DIRS}
${CAMITK_BUILD_INCLUDE_DIR}/libraries
)
@@ -129,95 +134,44 @@ set(CAMITK_INCLUDE_DIRECTORIES
# postfix for MSVC debug version
set(CAMITK_DEBUG_POSTFIX "-debug")
-
-
# basic list of all lib needed for linking with CamiTK core
if(MSVC)
# name of the camitk core lib
set(CAMITK_CORE_LIBRARIES optimized ${CAMITK_CORE_LIB_NAME}
debug ${CAMITK_CORE_LIB_NAME}${CAMITK_DEBUG_POSTFIX}
)
+
+ # Construct list of VTK libraries for linking
+ # CAMITK_VTK_LIBRARIES = VTK input libraries at linkage
+ foreach(VTK_LIBRARY ${VTK_LIBRARIES})
+ # Clear some errors on VTK configuration
+ # rename correctly verdict -> vtkverdict library
+ if(${VTK_LIBRARY} STREQUAL "verdict")
+ set(VTK_LIBRARY "vtkverdict")
+ endif()
+ set(CAMITK_VTK_LIBRARIES ${CAMITK_VTK_LIBRARIES} debug ${VTK_LIBRARY_DIR}/${VTK_LIBRARY}-${CAMITK_VTK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${VTK_LIBRARY_DIR}/${VTK_LIBRARY}-${CAMITK_VTK_VERSION}.lib)
+ endforeach()
+ # add missing vtkIOExport, vtkImagingStencil, vtkIOImport, vtkImagingMath library
+ set(CAMITK_VTK_LIBRARIES ${CAMITK_VTK_LIBRARIES} debug ${VTK_LIBRARY_DIR}/vtkIOExport-${CAMITK_VTK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${VTK_LIBRARY_DIR}/vtkIOExport-${CAMITK_VTK_VERSION}.lib)
+ set(CAMITK_VTK_LIBRARIES ${CAMITK_VTK_LIBRARIES} debug ${VTK_LIBRARY_DIR}/vtkImagingStencil-${CAMITK_VTK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${VTK_LIBRARY_DIR}/vtkImagingStencil-${CAMITK_VTK_VERSION}.lib)
+ set(CAMITK_VTK_LIBRARIES ${CAMITK_VTK_LIBRARIES} debug ${VTK_LIBRARY_DIR}/vtkIOImport-${CAMITK_VTK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${VTK_LIBRARY_DIR}/vtkIOImport-${CAMITK_VTK_VERSION}.lib)
+ set(CAMITK_VTK_LIBRARIES ${CAMITK_VTK_LIBRARIES} debug ${VTK_LIBRARY_DIR}/vtkImagingMath-${CAMITK_VTK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${VTK_LIBRARY_DIR}/vtkImagingMath-${CAMITK_VTK_VERSION}.lib)
+
# list of all core dependencies
set(CAMITK_LIBRARIES
- ${QT_LIBRARIES}
- debug ${VTK_DIR}/vtkCommon${CAMITK_DEBUG_POSTFIX}
- optimized vtkCommon
- debug ${VTK_DIR}/vtkFiltering${CAMITK_DEBUG_POSTFIX}
- optimized vtkFiltering
- debug ${VTK_DIR}/vtkGenericFiltering${CAMITK_DEBUG_POSTFIX}
- optimized vtkGenericFiltering
- debug ${VTK_DIR}/vtkGraphics${CAMITK_DEBUG_POSTFIX}
- optimized vtkGraphics
- debug ${VTK_DIR}/vtkHybrid${CAMITK_DEBUG_POSTFIX}
- optimized vtkHybrid
- debug ${VTK_DIR}/vtkImaging${CAMITK_DEBUG_POSTFIX}
- optimized vtkImaging
- debug ${VTK_DIR}/vtkIO${CAMITK_DEBUG_POSTFIX}
- optimized vtkIO
- debug ${VTK_DIR}/vtkRendering${CAMITK_DEBUG_POSTFIX}
- optimized vtkRendering
- debug ${VTK_DIR}/vtkVolumeRendering${CAMITK_DEBUG_POSTFIX}
- optimized vtkVolumeRendering
- debug ${VTK_DIR}/vtkftgl${CAMITK_DEBUG_POSTFIX}
- optimized vtkftgl
- debug ${VTK_DIR}/vtkWidgets${CAMITK_DEBUG_POSTFIX}
- optimized vtkWidgets
- debug ${VTK_DIR}/QVTK${CAMITK_DEBUG_POSTFIX}
- optimized QVTK
- debug ${VTK_DIR}/vtkViews${CAMITK_DEBUG_POSTFIX}
- optimized vtkViews
- debug ${VTK_DIR}/vtkInfovis${CAMITK_DEBUG_POSTFIX}
- optimized vtkInfovis
- debug ${VTK_DIR}/vtksys${CAMITK_DEBUG_POSTFIX}
- optimized vtksys
- debug ${VTK_DIR}/vtkfreetype${CAMITK_DEBUG_POSTFIX}
- optimized vtkfreetype
- debug qtpropertybrowser${CAMITK_DEBUG_POSTFIX}
- optimized qtpropertybrowser
+ ${CAMITK_VTK_LIBRARIES}
+ debug qtpropertybrowser${CAMITK_DEBUG_POSTFIX}.lib optimized qtpropertybrowser
)
else()
- # Name of the core library to link against
- set(CAMITK_CORE_LIBRARIES ${CAMITK_CORE_LIB_NAME})
+ # Name of the core library to link against
+ set(CAMITK_CORE_LIBRARIES ${CAMITK_CORE_LIB_NAME})
-# if(CMAKE_GENERATOR MATCHES "MinGW Makefiles") # Win32 running with MinGW
- # list of all core dependencies
- set(CAMITK_LIBRARIES
- ${QT_LIBRARIES}
- vtkCommon
- vtkFiltering
- vtkGenericFiltering
- vtkGraphics
- vtkHybrid
- vtkImaging
- vtkIO
- vtkRendering
- vtkVolumeRendering
- vtkftgl
- vtkWidgets
- QVTK
- qtpropertybrowser
- )
-# else() #Linux (or MacOS) platform.
-# # list of all core dependencies
-# set(CAMITK_LIBRARIES
-# ${QT_LIBRARIES}
-# vtkCommon
-# vtkFiltering
-# vtkGenericFiltering
-# vtkGraphics
-# vtkHybrid
-# vtkImaging
-# vtkIO
-# vtkRendering
-# vtkVolumeRendering
-# vtkftgl
-# vtkWidgets
-# QVTK
-# qtpropertybrowser
-# )
-# endif()
-# else()
-
+ # list of all core dependencies
+ set(CAMITK_LIBRARIES
+ ${VTK_LIBRARIES} # no need to add more libraries in the list, CMake & VTK handle it correclty on Linux & Apple
+ # QVTK
+ qtpropertybrowser
+ )
endif()
mark_as_advanced (CAMITK_CORE_LIB CAMITK_LINK_DIRECTORIES CAMITK_INCLUDE_DIRECTORIES CAMITK_LIBRARIES)
@@ -225,10 +179,19 @@ mark_as_advanced (CAMITK_CORE_LIB CAMITK_LINK_DIRECTORIES CAMITK_INCLUDE_DIRECTO
# additional unix system resources
if (UNIX)
# only possible on unix
- execute_process(COMMAND "date" "+%Y-%m-%d"
- OUTPUT_VARIABLE CURRENT_DATE
- OUTPUT_STRIP_TRAILING_WHITESPACE
- )
+ if(DEFINED ENV{SOURCE_DATE_EPOCH})
+ # to enable reproducible builds, see debian bug #794740
+ execute_process(COMMAND "date" "-u" "+%Y-%m-%d" "--date=@$ENV{SOURCE_DATE_EPOCH}"
+ OUTPUT_VARIABLE CURRENT_DATE
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+ else()
+ execute_process(COMMAND "date" "+%Y-%m-%d"
+ OUTPUT_VARIABLE CURRENT_DATE
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+ endif()
+
# Application man pages (always in section 1, this is an application...)
set(CAMITK_APPLICATION_MAN_INSTALL_DIR "share/man/man1")
# Desktop file always in share/applications (freedesktop standard)
diff --git a/sdk/cmake/modules/CamiTKMacros.cmake b/sdk/cmake/modules/CamiTKMacros.cmake
index 4ae62c6..d47cd97 100644
--- a/sdk/cmake/modules/CamiTKMacros.cmake
+++ b/sdk/cmake/modules/CamiTKMacros.cmake
@@ -8,34 +8,36 @@ include(GatherHeadersAndSources)
include(ParseArguments)
include(GetDirectoryName)
include(GetSubdirectoryFiles)
+include(ExportHeaders)
# -- CamiTK specific macros
-include(CamiTKAddSubDirectory)
-include(ExportHeaders)
+include(camitk/CamiTKAddSubDirectory)
+include(camitk/CamiTKInstallAllHeaders)
# -- CamiTK extensions and library macro
-include(CamiTKExtensionProject)
-include(CamiTKExtension)
-include(CamiTKLibrary)
-include(CamiTKApplication)
+include(camitk/CamiTKExtensionProject)
+include(camitk/CamiTKExtension)
+include(camitk/CamiTKLibrary)
+include(camitk/CamiTKApplication)
# -- CamiTK subproject gathering
-include(CamiTKSubProjectInit)
-include(CamiTKSubProjectAdd)
-include(CamiTKSubProjectValidate)
+include(camitk/cdash/projects/CamiTKSubProjectInit)
+include(camitk/cdash/projects/CamiTKSubProjectAdd)
+include(camitk/cdash/projects/CamiTKSubProjectValidate)
# -- CamiTK test macros (see also http://www.org/cmake/help/v2.8.8/cmake.html#section_PropertiesonTests)
-include(CamiTKInitTest)
-include(CamiTKAddTest)
+include(camitk/test/CamiTKInitTest)
+include(camitk/test/CamiTKAddTest)
# -- packaging macros
-include(CamiTKOpenSourcePackaging)
-include(CamiTKCEPPackaging)
+include(camitk/packaging/CamiTKOpenSourcePackaging)
+include(camitk/packaging/CamiTKCEPPackaging)
# -- CamiTK actions / components parsing test macros
-include(CamiTKParseTestInit)
-include(CamiTKParseTestAdd)
-include(CamiTKParseTestValidate)
+include(camitk/test/level/CamiTKParseTestInit)
+include(camitk/test/level/CamiTKParseTestAdd)
+include(camitk/test/level/CamiTKParseTestAddSeparator)
+include(camitk/test/level/CamiTKParseTestValidate)
# -- Translations
-include(CamiTKTranslate)
\ No newline at end of file
+include(camitk/CamiTKTranslate)
diff --git a/sdk/cmake/modules/FindCamiTK.cmake b/sdk/cmake/modules/FindCamiTK.cmake
index 550e1c2..2ff08a3 100644
--- a/sdk/cmake/modules/FindCamiTK.cmake
+++ b/sdk/cmake/modules/FindCamiTK.cmake
@@ -29,7 +29,7 @@
# $CAMITK_LICENCE_BEGIN$
#
# CamiTK - Computer Assisted Medical Intervention ToolKit
-# (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+# (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
#
# Visit http://camitk.imag.fr for more information
#
diff --git a/sdk/cmake/modules/doxygen.conf.in b/sdk/cmake/modules/doxygen.conf.in
index 4e08d53..aa03b3b 100644
--- a/sdk/cmake/modules/doxygen.conf.in
+++ b/sdk/cmake/modules/doxygen.conf.in
@@ -141,7 +141,7 @@ HTML_STYLESHEET =
HTML_COLORSTYLE_HUE = 216
HTML_COLORSTYLE_SAT = 91
HTML_COLORSTYLE_GAMMA = 73
-HTML_TIMESTAMP = YES
+HTML_TIMESTAMP = NO
#obsolete HTML_ALIGN_MEMBERS = YES
HTML_DYNAMIC_SECTIONS = YES
GENERATE_DOCSET = NO
@@ -233,32 +233,33 @@ PERL_PATH = @PERL_EXECUTABLE@
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
-CLASS_DIAGRAMS = YES
+CLASS_DIAGRAMS = NO
MSCGEN_PATH =
HIDE_UNDOC_RELATIONS = YES
-HAVE_DOT = @HAVE_DOT@
+HAVE_DOT = NO
DOT_NUM_THREADS = 0
DOT_FONTNAME = Helvetica
DOT_FONTSIZE = 10
DOT_FONTPATH =
CLASS_GRAPH = YES
-COLLABORATION_GRAPH = NO
+COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
#For doxygen 1.8 UML_LOOK = YES
-UML_LOOK = NO
-#For doxygen 1.8 UML_LIMIT_NUM_FIELDS = 10
+UML_LOOK = YES
+#For doxygen 1.8
+UML_LIMIT_NUM_FIELDS = 5
TEMPLATE_RELATIONS = YES
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
-CALL_GRAPH = NO
-CALLER_GRAPH = NO
+CALL_GRAPH = YES
+CALLER_GRAPH = YES
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH = @DOT_PATH@
DOTFILE_DIRS =
-DOT_GRAPH_MAX_NODES = 100
-MAX_DOT_GRAPH_DEPTH = 0
+DOT_GRAPH_MAX_NODES = 50
+MAX_DOT_GRAPH_DEPTH = 1
DOT_TRANSPARENT = YES
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
diff --git a/sdk/cmake/modules/macros/CamiTKAddSubDirectory.cmake b/sdk/cmake/modules/macros/CamiTKAddSubDirectory.cmake
deleted file mode 100644
index d10c609..0000000
--- a/sdk/cmake/modules/macros/CamiTKAddSubDirectory.cmake
+++ /dev/null
@@ -1,28 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! camitk_add_subdirectory is a utility macro that add a source subdirectory only if:
-#! 1. it exists
-#! 2. it contains a CMakeLists
-#! This can avoid CMake warning (see cmake --help-policy CMP0014), but do the
-#! opposite: it prints out an information message when it succeed including the directory.
-#!
-#! Usage:
-#! \code
-#! camitk_add_subdirectory(subdir)
-#! \endcode
-#!
-#! \param subdir (required) the name of the source subdirectory to include
-#!
-#! \ingroup group_sdk_cmake
-#!
-macro(camitk_add_subdirectory DirectoryName)
- if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${DirectoryName} AND EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${DirectoryName}/CMakeLists.txt)
- set(SUBDIRECTORY_MESSAGE ${CMAKE_PROJECT_NAME})
- if(CEP_NAME AND NOT ${CEP_NAME} STREQUAL ${CMAKE_PROJECT_NAME})
- set(SUBDIRECTORY_MESSAGE "${SUBDIRECTORY_MESSAGE} ${CEP_NAME}")
- endif()
- message(STATUS "${SUBDIRECTORY_MESSAGE} provides ${DirectoryName}:")
- add_subdirectory(${DirectoryName})
- endif()
-endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/CamiTKAddTest.cmake b/sdk/cmake/modules/macros/CamiTKAddTest.cmake
deleted file mode 100644
index 0b0d25f..0000000
--- a/sdk/cmake/modules/macros/CamiTKAddTest.cmake
+++ /dev/null
@@ -1,134 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! camitk_add_test is a macro to add a new test to the CTest infrastructure
-#! It encapsulates CMake add_test and adds useful way of testing programs.
-#! It cannot operate on its on, you need to call camitk_init_test first (and only once) before
-#! calling camitk_add_test
-#!
-#! Details on the runned test can be found in ${CMAKE_BINARY_DIR}/Testing/Temporary/target#
-#! where target is the executable name (see camitk_init_test() macro), and # is the test order number.
-#!
-#! Usage:
-#! \code
-#! camitk_add_test(EXECUTABLE_ARGS "arg1 arg2 arg3"
-#! PASS_FILE pristineOutput
-#! PASS_REGULAR_EXPRESSION regexp
-#! FAIL_REGULAR_EXPRESSION regexp
-#! )
-#! \endcode
-#!
-#! \param EXECUTABLE_ARGS (optional) The executable arguments (all in double quotes), typically each test will have different arguments. Can be empty
-#! \param PASS_FILE (optional) If specified the test to perform is to compare the output of the command to this file. It the output is the same, then the test is passed, otherwise it is failed.
-#! \param PASS_REGULAR_EXPRESSION (optional) This is equivalent to "PASS_REGULAR_EXPRESSION regexp" property for the test, see http://www.cmake.org/Wiki/CTest:FAQ#My_test_does_not_return_non-zero_on_failure._What_can_I_do.3F
-#! \param FAIL_REGULAR_EXPRESSION This is equivalent to "FAIL_REGULAR_EXPRESSION regexp" property for the test, see http://www.cmake.org/Wiki/CTest:FAQ#My_test_does_not_return_non-zero_on_failure._What_can_I_do.3F
-#!
-#! If no argument are given, it does the equivalent as add_test(name target)
-#!
-#! \note
-#! You can only choose one between nothing, PASS_FILE, PASS_REGULAR_EXPRESSION and FAIL_REGULAR_EXPRESSION
-#!
-#! Example invocation:
-#!
-#! \code
-#!
-#! add_executable(myprogram)
-#!
-#! ...
-#! # Start the test series for myprogram
-#! camitk_init_test(myprogram)
-#! camitk_add_test(EXECUTABLE_ARGS "-a inputfile.xml -c" PASS_FILE pristineOuputToCompareTo.xml) # will be called myprogram1
-#! ...
-#! camitk_add_test(...) # myprogram2
-#!
-#! \endcode
-#
-#! @sa camitk_init_test
-macro(camitk_add_test)
- parse_arguments(CAMITK_ADD_TEST
- "EXECUTABLE_ARGS;PASS_FILE;PASS_REGULAR_EXPRESSION;FAIL_REGULAR_EXPRESSION;PASS_FILE_OUTPUT;TEST_SUFFIX;PROJECT_NAME;" # possible lists #PASS_FILE -> compare the std output to a ref file # PASS_FILE_OUTPUT -> compare two files given as parameters
- "" # possible options
- ${ARGN}
- )
-
- math(EXPR CAMITK_TEST_ID "${CAMITK_TEST_ID} + 1")
- set(CAMITK_TEST_NAME "${CAMITK_TEST_BASENAME}${CAMITK_ADD_TEST_TEST_SUFFIX}${CAMITK_TEST_ID}")
- set(CAMITK_TEST_LIST ${CAMITK_TEST_LIST} ${CAMITK_TEST_NAME})
-# message(STATUS "Configuring test ${CAMITK_TEST_NAME}")
-
- # determine cmake macro path
- if (NOT EXISTS SDK_TOP_LEVEL_SOURCE_DIR)
- # this macro is called outside the sdk
- set(CAMITK_CMAKE_MACRO_PATH ${CAMITK_CMAKE_DIR}/modules/macros)
- if(NOT IS_DIRECTORY ${CAMITK_CMAKE_MACRO_PATH})
- # inside opensource but not in sdk (modeling or imaging)
- set(CAMITK_CMAKE_MACRO_PATH ${CMAKE_SOURCE_DIR}/sdk/cmake/modules/macros)
- endif()
- else()
- # directly use the macro source dir
- set(CAMITK_CMAKE_MACRO_PATH ${SDK_TOP_LEVEL_SOURCE_DIR}/cmake/modules/macros)
- endif()
-
- # create test output directory
- set(CAMITK_TEST_OUTPUT_DIR "${CMAKE_BINARY_DIR}/Testing/Temporary/${CAMITK_TEST_NAME}")
-# message(STATUS "Creating test output dir ${CAMITK_TEST_OUTPUT_DIR}")
- execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_TEST_OUTPUT_DIR})
-
- # check which test is to be done
- if(CAMITK_ADD_TEST_PASS_FILE)
- add_test(NAME ${CAMITK_TEST_NAME}
- COMMAND ${CMAKE_COMMAND}
- -DCAMITK_TEST_COMMAND=${CAMITK_INIT_TEST_EXECUTABLE}
- -DCAMITK_TEST_COMMAND_ARG=${CAMITK_ADD_TEST_EXECUTABLE_ARGS}
- -DCAMITK_TEST_PASS_FILE=${CAMITK_ADD_TEST_PASS_FILE}
- -DCAMITK_TEST_OUTPUT_DIR=${CAMITK_TEST_OUTPUT_DIR}
- -DCAMITK_TEST_NAME=${CAMITK_TEST_NAME}
- -P ${CAMITK_CMAKE_MACRO_PATH}/CamiTKTestPassFile.cmake
- )
- elseif(CAMITK_ADD_TEST_PASS_FILE_OUTPUT)
- add_test(NAME ${CAMITK_TEST_NAME}
- COMMAND ${CMAKE_COMMAND}
- -DCAMITK_TEST_COMMAND=${CAMITK_INIT_TEST_EXECUTABLE}
- -DCAMITK_TEST_COMMAND_ARG=${CAMITK_ADD_TEST_EXECUTABLE_ARGS}
- -DCAMITK_TEST_PASS_FILE=${CAMITK_ADD_TEST_PASS_FILE_OUTPUT}
- -DCAMITK_TEST_OUTPUT_DIR=${CAMITK_TEST_OUTPUT_DIR}
- -DCAMITK_TEST_NAME=${CAMITK_TEST_NAME}
- -P ${CAMITK_CMAKE_MACRO_PATH}/CamiTKTestCompareFile.cmake
- )
- else()
- # set output files for more advanced checking/debugging
- set(CAMITK_TEST_COMMAND_FILE ${CAMITK_TEST_OUTPUT_DIR}/command) # which command is run to test the exectable
- # cleanup
- execute_process(COMMAND ${CMAKE_COMMAND} -E remove -f ${CAMITK_TEST_COMMAND_FILE} )
- file(WRITE ${CAMITK_TEST_COMMAND_FILE} "Test command: ${CAMITK_INIT_TEST_EXECUTABLE} ${CAMITK_ADD_TEST_EXECUTABLE_ARGS}\nPASS_REGULAR_EXPRESSION: '${CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION}'\n")
-
- if(CAMITK_ADD_TEST_EXECUTABLE_ARGS)
- # expands all arguments
- string(REPLACE " " ";" CAMITK_TEST_COMMAND_ARG_LIST ${CAMITK_ADD_TEST_EXECUTABLE_ARGS})
- else()
- set(CAMITK_TEST_COMMAND_ARG_LIST)
- endif()
-
- # add the simple test command
- add_test(NAME ${CAMITK_TEST_NAME}
- COMMAND ${CAMITK_INIT_TEST_EXECUTABLE} ${CAMITK_TEST_COMMAND_ARG_LIST}
- )
-
- # add properties if needed
- if(CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION)
- set_tests_properties(${CAMITK_TEST_NAME} PROPERTIES PASS_REGULAR_EXPRESSION ${CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION})
- else()
- if(CAMITK_ADD_TEST_FAIL_REGULAR_EXPRESSION)
- set_tests_properties(${CAMITK_TEST_NAME} PROPERTIES FAIL_REGULAR_EXPRESSION ${CAMITK_ADD_TEST_FAIL_REGULAR_EXPRESSION})
- endif()
- endif()
- endif()
-
- # set the label for tests
- if( CAMITK_ADD_TEST_PROJECT_NAME )
- set_tests_properties( ${CAMITK_TEST_NAME} PROPERTIES LABELS ${CAMITK_ADD_TEST_PROJECT_NAME} )#associate tests to a project name in CDash
- else()
- set_tests_properties( ${CAMITK_TEST_NAME} PROPERTIES LABELS ${CAMITK_TEST_BASENAME} )
- endif()
-
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKApplication.cmake b/sdk/cmake/modules/macros/CamiTKApplication.cmake
deleted file mode 100644
index eada692..0000000
--- a/sdk/cmake/modules/macros/CamiTKApplication.cmake
+++ /dev/null
@@ -1,1070 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_application simplify writing a CMakeLists.txt for CamiTK application extension
-#!
-#! The name of the application is automatically the name of the directory from where this macro
-#! is called prefixed with "camitk-"
-#!
-#! On Unix additional system resources can also be automatically installed or configured: man pages,
-#! desktop file and XPM icons.
-#! - Man pages should be resources/camitk-appdirname.1 or resources/camitk-appdirname.1.in (in this
-#! case, it will be configured first).
-#! - Desktop file should be in resources/camitk-appdirname.desktop (refer to
-#! http://standards.freedesktop.org/desktop-entry-spec/desktop-entry-spec-latest.html and
-#! http://standards.freedesktop.org/menu-spec/1.0/apa.html for valid category details)
-#! - XPM icons should be found in resources/camitk-appdirname.xpm (an icon can also be used in
-#! to set the application icon (use setWindowIcon(QIcon(":/resources/camitk-appdirname.xpm")) as well)
-#!
-#! To write a simple man page, please refer to SDK application examples. If you need to
-#! generate a simple manpage or analyze the command line arguments, the CamiTK team recommands
-#! to use Code Synthesis CLI configuration (see http://codesynthesis.com/projects/cli)
-#!
-#! usage:
-#! \code
-#! camitk_application(
-#! [DISABLED]
-#! [NEEDS_QT_MODULES]
-#! [NEEDS_ITK]
-#! [NEEDS_PYTHON]
-#! [NEEDS_CEP_LIBRARIES CEPLib1 CEPLib12 ...]
-#! [NEEDS_COMPONENT_EXTENSION component1 component2 ...]
-#! [NEEDS_ACTION_EXTENSION ation1 action2 ...]
-#! [DEFINES flag1 flag2 ...]
-#! [CXX_FLAGS flag1 flag2 ...]
-#! [ADDITIONAL_SOURCES source.cxx source.cpp ...]
-#! [INCLUDE_DIRECTORIES dir1 dir2 ...]
-#! [EXTERNAL_LIBRARIES lib1 lib2 ...]
-#! [EXTRA_TRANSLATE_LANGUAGE]
-#! )
-#! \endcode
-#!
-#! \param DISABLED means this is a default application is NOT to be compiled automatically
-#! \param NEEDS_QT_MODULES add this if your library depends on Qt modules, such as QtCore, QtGui, QtMultimedia, QtNetwork, QtOpenGL, QtScript, QtScriptTools, QtSql, QtSvg, QtWebkit, QtXml, QtXmlPatterns, QtDeclarative
-#! \param NEEDS_ITK means this application requires ITK to be compiled / run.
-#! \param NEEDS_CEP_LIBRARIES list of needed camitk CEP libraries
-#! \param NEEDS_COMPONENT_EXTENSION list of needed component extensions
-#! \param NEEDS_ACTION_EXTENSION list of needed component extensions
-#! \param DEFINES list of define flags to add at compilation time
-#! \param CXX_FLAGS = list of compiler flags to add (such as warning levels (-Wall ...)).
-#! \param ADDITIONAL_SOURCES list of additional sources (that cannot be automatically found by gather_headers_and_sources macro)
-#! \param CEP_NAME specify the CEP_NAME, which is used to categorized the application for packaging purpose
-#! No CEP_NAME provided will result in default categorization (generic application).
-#! \param DESCRIPTION Simple description of the application. Used for packaging presentation for instance.
-#! \param INCLUDE_DIRECTORIES additional include directories
-#! \param EXTERNAL_LIBRARIES external libraries to add to the link command
-#! \param EXTRA_TRANSLATE_LANGUAGE Additionnal extra language to translate the application
-macro(camitk_application)
-
- #########################################################################
- # #
- # ARGUMENTS PARSING #
- # #
- # * Use a macro to create the CMAKE variables according to the #
- # provided options as input. #
- # #
- #########################################################################
-
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} APPLICATION_NAME)
-
- parse_arguments(${APPLICATION_NAME_CMAKE}
- "NEEDS_CEP_LIBRARIES;NEEDS_TOOL;NEEDS_COMPONENT_EXTENSION;NEEDS_ACTION_EXTENSION;DEFINES;CXX_FLAGS;ADDITIONAL_SOURCES;CEP_NAME;DESCRIPTION;EXTERNAL_LIBRARIES;INCLUDE_DIRECTORIES;EXTRA_TRANSLATE_LANGUAGE" # possible lists
- "DISABLED;NEEDS_QT_MODULES;NEEDS_ITK;NEEDS_QTXML;NEEDS_XSD;NEEDS_XERCESC;NEEDS_PYTHON" # possible options
- ${ARGN}
- )
-
-
-
- #########################################################################
- # #
- # CREATE CMAKE VARIABLES #
- # #
- # * Create required and useful CMake variables for the macro #
- # #
- #########################################################################
-
- # CMAKE CACHE VARIABLE
- # if it is the first cmake run, create the application variable with a correct initial value
- if(NOT APPLICATION_${APPLICATION_NAME_CMAKE}_INTERNAL)
- # add option to enable/disable this extension and set it to true by default
- # Building the extension can be disabled by giving the argument DISABLED to the macro
- # or by passing the flag -D${TYPE_EXTENSION_CMAKE}_${APPLICATION_NAME_CMAKE}_DISABLED:BOOL=TRUE
- if(${APPLICATION_NAME_CMAKE}_DISABLED)
- set(APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED FALSE)
- else()
- set(APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED TRUE)
- endif()
- set(APPLICATION_${APPLICATION_NAME_CMAKE} ${APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED} CACHE BOOL "Build application ${APPLICATION_NAME}")
- set(APPLICATION_${APPLICATION_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable APPLICATION_${APPLICATION_NAME} already created?")
- endif()
-
- # APPLICATION TARGET NAME
- if (PACKAGING_NSIS)
- # NSIS requires that cpack component names do not feature space or "-" characters
- set(APPLICATION_TARGET_NAME application_${APPLICATION_NAME})
- else()
- set(APPLICATION_TARGET_NAME application-${APPLICATION_NAME})
- endif()
-
-
-
- # if this extension is enabled, do everything needed
- # otherwise... do nothing
- if (APPLICATION_${APPLICATION_NAME_CMAKE})
-
- message(STATUS "Building application ${APPLICATION_NAME}")
-
-
-
- #########################################################################
- # #
- # INCLUDE DIRECTORIES #
- # #
- # * Include basic directories where to look header files #
- # * Include also additional user provided directories #
- # * These directories are used for compilation step #
- # #
- #########################################################################
- # BASIC DIRECTORIES
- include_directories(${CAMITK_INCLUDE_DIRECTORIES})
- include_directories(${CMAKE_CURRENT_BINARY_DIR})
- include_directories(${CMAKE_CURRENT_SOURCE_DIR})
-
- # USER INPUT DIRECTORIES
- include_directories(${${APPLICATION_NAME_CMAKE}_INCLUDE_DIRECTORIES})
-
-
-
- #########################################################################
- # #
- # GATHER RESSOURCES #
- # #
- # * get all the headers (.h) and source files (.cpp) of the project #
- # * create the needed Qt files (using moc and uic) #
- # #
- #########################################################################
-
- # get all headers, sources and do what is needed for Qt
- # one need to do this just before the add_library so that all defines, include directories and link directories
- # are set properly (gather_headers_and_sources include the call to Qt moc and uic)
- gather_headers_and_sources(${APPLICATION_NAME})
-
-
-
- #########################################################################
- # #
- # ADDITIONAL KNOWN LIBRARY DEPENDENCIES #
- # #
- # * Look for specific library needed #
- # * Specific libraries are specified as option with the #
- # NEEDS_LIBRARY syntax (see macro syntax for more options) #
- # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
- # #
- #########################################################################
-
- # Looking for ITK
- set(ITK_LIBRARIES "")
- if(${APPLICATION_NAME_CMAKE}_NEEDS_ITK)
- find_package(ITK REQUIRED)
- if(ITK_FOUND)
- include(${ITK_USE_FILE})
- set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
- message(STATUS "${APPLICATION_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
-
- # Now select the ITK libraries according to the ITK version found.
- # ITK 3.x.x (mostly 3.20.1)
- if ((${ITK_VERSION} VERSION_GREATER "3") AND (${ITK_VERSION} VERSION_LESS "4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- set(ITK_LIBRARIES
- debug ITKAlgorithms${CAMITK_DEBUG_POSTFIX}
- optimized ITKAlgorithms
- debug ITKBasicFilters${CAMITK_DEBUG_POSTFIX}
- optimized ITKBasicFilters
- debug ITKCommon${CAMITK_DEBUG_POSTFIX}
- optimized ITKCommon
- debug ITKIO${CAMITK_DEBUG_POSTFIX}
- optimized ITKIO
- debug ITKNrrdIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcm${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg12${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg16${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg8${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObject${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_inst${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- )
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- message(FATAL_ERROR "It seems you have ITK version 3.x installed. This one is not compatible with Visual Studio 2012 or 2013. Please install ITK 4.3.x or 4.5.x instead")
- endif()
- elseif(MINGW)
- message(FATAL_ERROR "CamiTK does not support ITK 3.x libraries for MinGW. You may file a feature request: https://bugzilla-timc.imag.fr/")
- else() #APPLE OR UNIX
- set(ITK_LIBRARIES ITKBasicFilters ITKCommon ITKIO ITKAlgorithms)
- endif()
-
- # ITK 4.3.x (mostly 4.3.2)
- elseif((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "4.4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- message(FATAL_ERROR "ITK version ${ITK_VERSION} is not compatible with Visual Studio 2008 or 2010. Please install ITK version 4.3.x or 4.5.x")
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- # Debug libraries
- debug ITKCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKNrrdIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONIFTI-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONRRD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDICT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDSED-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmIOD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg8-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg12-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg16-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmMSFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKgiftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5_cpp-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBioRad-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOStimulate-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTIFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBiasCorrection-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBioCell-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKFEM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBMP-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOCSV-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGDCM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGE-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOImageBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOJPEG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOLSM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMeta-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSiemens-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformInsightLegacy-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformMatlab-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOXML-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKKLMRegionGrowing-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKLabelMap-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkNetlibSlatec-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizers-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizersv4-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPath-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPolynomials-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKQuadEdgeMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKReview-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKStatistics-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoCore-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVNLInstantiation-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKWatersheds-4.3${CAMITK_DEBUG_POSTFIX}.lib
- # Release librariesdebug
- optimized ITKCommon-4.3.lib
- optimized ITKNrrdIO-4.3.lib
- optimized itkgdcmCommon-4.3.lib
- optimized itkjpeg-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized itkpng-4.3.lib
- optimized itktiff-4.3.lib
- optimized ITKSpatialObjects-4.3.lib
- optimized itkvnl_algo-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvnl-4.3.lib
- optimized itkvcl-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itksys-4.3.lib
- optimized ITKDICOMParser-4.3.lib
- optimized ITKEXPAT-4.3.lib
- optimized ITKniftiio-4.3.lib
- optimized ITKznz-4.3.lib
- optimized itkzlib-4.3.lib
- optimized snmpapi.lib
- optimized rpcrt4.lib
- optimized ws2_32.lib
- optimized comctl32.lib
- optimized wsock32.lib
- optimized opengl32.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIONIFTI-4.3.lib
- optimized ITKIONRRD-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized itkgdcmDICT-4.3.lib
- optimized itkgdcmDSED-4.3.lib
- optimized itkgdcmIOD-4.3.lib
- optimized itkgdcmjpeg8-4.3.lib
- optimized itkgdcmjpeg12-4.3.lib
- optimized itkgdcmjpeg16-4.3.lib
- optimized itkgdcmMSFF-4.3.lib
- optimized ITKgiftiio-4.3.lib
- optimized itkhdf5_cpp-4.3.lib
- optimized itkhdf5-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized ITKIOBioRad-4.3.lib
- optimized ITKIOStimulate-4.3.lib
- optimized ITKIOTIFF-4.3.lib
- optimized ITKIOVTK-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized ITKBiasCorrection-4.3.lib
- optimized ITKBioCell-4.3.lib
- optimized ITKFEM-4.3.lib
- optimized ITKIOBMP-4.3.lib
- optimized ITKIOCSV-4.3.lib
- optimized ITKIOGDCM-4.3.lib
- optimized ITKIOGE-4.3.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIOHDF5-4.3.lib
- optimized ITKIOImageBase-4.3.lib
- optimized ITKIOIPL-4.3.lib
- optimized ITKIOJPEG-4.3.lib
- optimized ITKIOLSM-4.3.lib
- optimized ITKIOMesh-4.3.lib
- optimized ITKIOMeta-4.3.lib
- optimized ITKIOSiemens-4.3.lib
- optimized ITKIOSpatialObjects-4.3.lib
- optimized ITKIOTransformBase-4.3.lib
- optimized ITKIOTransformHDF5-4.3.lib
- optimized ITKIOTransformInsightLegacy-4.3.lib
- optimized ITKIOTransformMatlab-4.3.lib
- optimized ITKIOXML-4.3.lib
- optimized ITKKLMRegionGrowing-4.3.lib
- optimized ITKLabelMap-4.3.lib
- optimized ITKMesh-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itkNetlibSlatec-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized ITKOptimizers-4.3.lib
- optimized ITKOptimizersv4-4.3.lib
- optimized ITKPath-4.3.lib
- optimized itkpng-4.3.lib
- optimized ITKPolynomials-4.3.lib
- optimized ITKQuadEdgeMesh-4.3.lib
- optimized ITKReview-4.3.lib
- optimized ITKStatistics-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvcl-4.3.lib
- optimized ITKVideoCore-4.3.lib
- optimized ITKVideoIO-4.3.lib
- optimized ITKVTK-4.3.lib
- optimized ITKVNLInstantiation-4.3.lib
- optimized ITKWatersheds-4.3.lib
- )
- endif()
- elseif(MINGW OR APPLE)
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- ITKCommon-4.3
- ITKNrrdIO-4.3
- itkgdcmCommon-4.3
- itkjpeg-4.3
- itkopenjpeg-4.3
- itkpng-4.3
- itktiff-4.3
- ITKSpatialObjects-4.3
- itkvnl_algo-4.3
- itkv3p_netlib-4.3
- itkvnl-4.3
- itkvcl-4.3
- itkv3p_lsqr-4.3
- ITKMetaIO-4.3
- itksys-4.3
- ITKDICOMParser-4.3
- ITKEXPAT-4.3
- ITKniftiio-4.3
- ITKznz-4.3
- itkzlib-4.3
- snmpapi
- rpcrt4
- ws2_32
- comctl32
- wsock32
- opengl32
- ITKIOGIPL-4.3
- ITKIONIFTI-4.3
- ITKIONRRD-4.3
- ITKIOPNG-4.3
- itkgdcmDICT-4.3
- itkgdcmDSED-4.3
- itkgdcmIOD-4.3
- itkgdcmjpeg8-4.3
- itkgdcmjpeg12-4.3
- itkgdcmjpeg16-4.3
- itkgdcmMSFF-4.3
- ITKgiftiio-4.3
- itkhdf5_cpp-4.3
- itkhdf5-4.3
- ITKMetaIO-4.3
- ITKIOBioRad-4.3
- ITKIOStimulate-4.3
- ITKIOTIFF-4.3
- ITKIOVTK-4.3
- ITKIOPNG-4.3
- ITKBiasCorrection-4.3
- ITKBioCell-4.3
- ITKFEM-4.3
- ITKIOBMP-4.3
- ITKIOCSV-4.3
- ITKIOGDCM-4.3
- ITKIOGE-4.3
- ITKIOGIPL-4.3
- ITKIOHDF5-4.3
- ITKIOImageBase-4.3
- ITKIOIPL-4.3
- ITKIOJPEG-4.3
- ITKIOLSM-4.3
- ITKIOMesh-4.3
- ITKIOMeta-4.3
- ITKIOSiemens-4.3
- ITKIOSpatialObjects-4.3
- ITKIOTransformBase-4.3
- ITKIOTransformHDF5-4.3
- ITKIOTransformInsightLegacy-4.3
- ITKIOTransformMatlab-4.3
- ITKIOXML-4.3
- ITKKLMRegionGrowing-4.3
- ITKLabelMap-4.3
- ITKMesh-4.3
- ITKMetaIO-4.3
- itkNetlibSlatec-4.3
- itkopenjpeg-4.3
- ITKOptimizers-4.3
- ITKOptimizersv4-4.3
- ITKPath-4.3
- itkpng-4.3
- ITKPolynomials-4.3
- ITKQuadEdgeMesh-4.3
- ITKReview-4.3
- ITKStatistics-4.3
- itkv3p_lsqr-4.3
- itkv3p_netlib-4.3
- itkvcl-4.3
- ITKVideoCore-4.3
- ITKVideoIO-4.3
- ITKVTK-4.3
- ITKVNLInstantiation-4.3
- ITKWatersheds-4.3
- )
- else() #Linux
- set(ITK_LIBRARIES ITKCommon-4.3)
- endif()
-
- # ITK 4.5.x (mostly 4.5.1)
- elseif((${ITK_VERSION} VERSION_GREATER "4.4") AND (${ITK_VERSION} VERSION_LESS "4.7"))
- if(MSVC)
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet on Visual Studio compiler. You may file a feature request: https://bugzilla-timc.imag.fr/")
- elseif(MINGW)
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet for MinGW compiler. You may file a feature request: https://bugzilla-timc.imag.fr/")
- elseif(APPLE)
- set(ITK_LIBRARIES
- ITKBiasCorrection
- ITKBioCell
- ITKCommon
- ITKDICOMParser
- ITKEXPAT
- ITKFEM
- ITKGPUAnisotropicSmoothing
- ITKGPUCommon
- ITKGPUFiniteDifference
- ITKGPUImageFilterBase
- ITKGPUPDEDeformable
- ITKGPUSmoothing
- ITKGPUThresholding
- ITKIOBMP
- ITKIOBioRad
- ITKIOCSV
- ITKIOGDCM
- ITKIOGE
- ITKIOGIPL
- ITKIOHDF5
- ITKIOIPL
- ITKIOImageBase
- ITKIOJPEG
- ITKIOLSM
- ITKIOMesh
- ITKIOMeta
- ITKIONIFTI
- ITKIONRRD
- ITKIOPNG
- ITKIOSiemens
- ITKIOSpatialObjects
- ITKIOStimulate
- ITKIOTIFF
- ITKIOTransformBase
- ITKIOTransformHDF5
- ITKIOTransformInsightLegacy
- ITKIOTransformMatlab
- ITKIOVTK
- ITKIOXML
- ITKKLMRegionGrowing
- ITKLabelMap
- ITKMesh
- ITKMetaIO
- ITKNrrdIO
- ITKOptimizers
- ITKOptimizersv4
- ITKPath
- ITKPolynomials
- ITKQuadEdgeMesh
- ITKReview
- ITKSpatialObjects
- ITKStatistics
- ITKVNLInstantiation
- ITKVTK
- ITKVideoCore
- ITKVideoIO
- ITKWatersheds
- ITKgiftiio
- ITKniftiio
- ITKznz
- itkNetlibSlatec
- itkdouble-conversion
- itkhdf5
- itkhdf5_cpp
- itkjpeg
- itkopenjpeg
- itkpng
- itksys
- itktiff
- itkv3p_lsqr
- itkv3p_netlib
- itkvcl
- itkvnl
- itkvnl_algo
- itkzlib
- )
- else() #Linux
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet for Linux platform. You may file a feature request: https://bugzilla-timc.imag.fr/")
- endif()
-
- # ITK version > 4.6 (mostly ITK 5.x)
- else()
- message(FATAL_ERROR "CamiTK does not support yet ITK version 5.x. You may file a feature request: https://bugzilla-timc.imag.fr/")
- endif()
- endif()
- endif() #NEEDS ITK
-
- # XERCES-C
- set(XERCESC_LIBRARIES)
- if(${APPLICATION_NAME_CMAKE}_NEEDS_XERCESC)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${APPLICATION_NAME}: xerces-c required. Please provide Xerces-C path.")
- endif()
- endif()
-
- # XSD
- if(${APPLICATION_NAME_CMAKE}_NEEDS_XSD)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- find_package(XSD REQUIRED)
- include_directories(${XSD_INCLUDE_DIR})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${APPLICATION_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
- endif()
- endif()
-
- # PYTHON
- set(PYTHON_LIBRARIES "")
- if(${APPLICATION_NAME_CMAKE}_NEEDS_PYTHON)
- message(STATUS "Python needed by ${APPLICATION_NAME}")
- find_package(PythonLibs 2.7 REQUIRED)
- if(PYTHONLIBS_FOUND)
- message(STATUS "Python found (needed by ${APPLICATION_NAME})")
- include_directories(${PYTHON_INCLUDE_DIRS})
- # PYTHON_LIRARIES is automatically and correctly set by find_package
- else()
- message(FATAL_ERROR "Python (2.7 or above) is required by ${APPLICATION_NAME} : please add your python installation dir to your PATH environment variable")
- endif()
- endif()
-
- # QT MODULES
- set(QT_MODULES_LIBRARIES)
- if(${APPLICATION_NAME_CMAKE}_NEEDS_QT_MODULES)
- find_package(Qt4 "4.7" COMPONENTS QtCore QtGui QtXml QtXmlPatterns QtWebkit QtOpenGL QtScript QtSQL QtNetwork REQUIRED)
- if(NOT QT4_FOUND)
- message(SEND_ERROR "${APPLICATION_NAME} : Failed to find Qt 4.7 or greater. This is needed by CamiTK.")
- endif()
-
- # CMake will add the Qt modules specific include directories
- include(${QT_USE_FILE})
- # Qt additional modules are required for linking
- set(QT_MODULES_LIBRARIES ${QT_LIBRARIES})
- endif()
-
- # EXTERNAL LIBRARIES
- set(EXTERNAL_LIBRARIES)
- if(${APPLICATION_NAME_CMAKE}_EXTERNAL_LIBRARIES)
- foreach(EXTERNAL_LIBRARY ${${APPLICATION_NAME_CMAKE}_EXTERNAL_LIBRARIES})
- if (MSVC) # TODO We have to decide how to handle debug version of external libraries
- set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES}
- debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}
- optimized ${EXTERNAL_LIBRARY}
- )
- else()
- set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
- endif()
- endforeach()
- endif()
-
- # BACKWARD COMPATIBILITY
- # NEEDS_TOOLS option
- # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
- # check deprecated (and warn)
- # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
- if(${APPLICATION_NAME_CMAKE}_NEEDS_TOOL)
- message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_application macro option NEEDS_TOOL is deprecated, please use NEEDS_CEP_LIBRARIES instead..")
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${${APPLICATION_NAME_CMAKE}_NEEDS_TOOL})
- endif()
-
-
-
- #########################################################################
- # #
- # LINK DIRECTORIES #
- # #
- # * Link directories are used to indicate the compiler where #
- # to look for folder containing libraries to link with. #
- # #
- #########################################################################
- # CAMITK BASIC LIB DIRECTORIES
- link_directories(${CAMITK_LINK_DIRECTORIES})
-
-
-
- #########################################################################
- # #
- # TARGET COMPILATION DEFINITION #
- # #
- # * Additional sources files to consider at compilation (.cpp) #
- # * CMake project target definition #
- # #
- #########################################################################
- # EXTERNAL SOURCES
- set(${APPLICATION_NAME}_SOURCES ${${APPLICATION_NAME}_SOURCES} ${${APPLICATION_NAME_CMAKE}_ADDITIONAL_SOURCES})
-
- # APPLE BUNDLE DEFINITIONS
- if(APPLE)
- set(MACOSX_BUNDLE_INFO_STRING "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
- set(MACOSX_BUNDLE_BUNDLE_VERSION "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
- set(MACOSX_BUNDLE_LONG_VERSION_STRING "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
- set(MACOSX_BUNDLE_SHORT_VERSION_STRING "${CAMITK_SHORT_VERSION_STRING}")
- set(MACOSX_BUNDLE_COPYRIGHT "2014 UJF")
- set(MACOSX_BUNDLE_ICON_FILE "${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.icns")
- set(MACOSX_BUNDLE_BUNDLE_NAME "${APPLICATION_TARGET_NAME}")
-
- set(MACOSX_BUNDLE_RESOURCES "${CMAKE_CURRENT_BINARY_DIR}/${APPLICATION_TARGET_NAME}.app/Contents/Resources")
- set(MACOSX_BUNDLE_ICON "${MACOSX_BUNDLE_ICON_FILE}")
- execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${MACOSX_BUNDLE_RESOURCES})
- execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different ${MACOSX_BUNDLE_ICON} ${MACOSX_BUNDLE_RESOURCES})
- endif()
-
- # CMAKE TARGET DEFINITION
-# add_executable(${APPLICATION_TARGET_NAME} MACOSX_BUNDLE ${${APPLICATION_NAME}_SOURCES})
- add_executable(${APPLICATION_TARGET_NAME} ${${APPLICATION_NAME}_SOURCES})
-
-
-
- #########################################################################
- # #
- # CAMITK ACTION / COMPONENT / LIBRARIES DEPENDENCIES #
- # #
- # * Look for action / component / libraries dependencies #
- # * Specific actions / components / libraries are specified as option #
- # with the NEEDS_ACTION/COMPONENT_EXTENSION/CEP_LIBRARIES syntax #
- # * Add dependencies to library-camitkcore and the testing #
- # action/component if test are runned on it #
- # #
- #########################################################################
-
- # 1st CAMITKCORE LIBRARY DEPENDENCY
- add_dependencies(${APPLICATION_TARGET_NAME} ${CAMITK_CORE_TARGET_LIB_NAME})
-
- # 2nd COMPONENTS DEPENDENCIES
- if(${APPLICATION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION)
- set(COMPONENTS_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(COMPONENT_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
- # file dependency
- if (MSVC)
- set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES}
- debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/components/${COMPONENT_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${COMPONENT_NEEDED}
- )
- else()
- set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES} ${COMPONENT_NEEDED})
- endif()
- # CMake / CDash dependencies
- if(PACKAGING_NSIS)
- add_dependencies(${APPLICATION_TARGET_NAME} component_${COMPONENT_NEEDED})
- else()
- add_dependencies(${APPLICATION_TARGET_NAME} component-${COMPONENT_NEEDED})
- set(COMPONENTS_DEPENDENCY_LIST ${COMPONENTS_DEPENDENCY_LIST} component-${COMPONENT_NEEDED})
- endif()
- endforeach()
- endif()
-
- # 3rd ACTIONS DEPENDENCIES
- if(${APPLICATION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION)
- set(ACTIONS_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(ACTION_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/actions/${ACTION_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/actions/${ACTION_NEEDED})
- # file dependency
- if (MSVC)
- set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES}
- debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/${ACTION_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${ACTION_NEEDED}
- )
- else()
- set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES} ${ACTION_NEEDED})
- endif()
- # CMake / CDash dependencies
- if (PACKAGING_NSIS)
- add_dependencies(${APPLICATION_TARGET_NAME} action_${ACTION_NEEDED})
- else()
- add_dependencies(${APPLICATION_TARGET_NAME} action-${ACTION_NEEDED})
- set(ACTIONS_DEPENDENCY_LIST ${ACTIONS_DEPENDENCY_LIST} action-${ACTION_NEEDED})
- endif()
- endforeach()
- endif()
-
- # 4th CEP LIBRARIES DEPENDENCIES
- if(${APPLICATION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
- set(CEP_LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(CEP_LIBRARY_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- # file dependency
- if (MSVC)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${CEP_LIBRARY_NEEDED}
- )
- else()
- if(PACKAGING_NSIS)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- else()
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- endif()
- endif()
- # CMake / CDash dependencies
- if (PACKAGING_NSIS)
- add_dependencies(${APPLICATION_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
- else()
- add_dependencies(${APPLICATION_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
- set(CEP_LIBRARIES_DEPENDENCY_LIST ${CEP_LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
- endif()
- endforeach()
- endif()
-
-
-
- #########################################################################
- # #
- # COMPILATION FLAG #
- # #
- # * Flags are options to give to the compiler #
- # * Add user input flags #
- # * Add platform specific flags #
- # #
- #########################################################################
-
- # USER INPUT COMPILER FLAG
- if(${APPLICATION_NAME_CMAKE}_DEFINES)
- foreach (FLAG ${${APPLICATION_NAME_CMAKE}_DEFINES})
- add_definitions(-D${FLAG})
- endforeach()
- endif()
-
- # USER INPUT CUSTOM COMPILER FLAG
- if(${APPLICATION_NAME_CMAKE}_CXX_FLAGS)
- foreach (FLAG ${${APPLICATION_NAME_CMAKE}_CXX_FLAGS})
- set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${FLAG}")
- endforeach()
- endif()
-
-
-
- #########################################################################
- # #
- # LINKING #
- # #
- # * Linking is the last stage of compilation #
- # * Indicate what libraries to use for linking the target #
- # #
- #########################################################################
- # LINKING LIBRARIES
- target_link_libraries(${APPLICATION_TARGET_NAME} ${CAMITK_CORE_LIBRARIES} ${CAMITK_LIBRARIES} ${COMPONENT_EXTENSION_LIBRARIES} ${ACTION_EXTENSION_LIBRARIES} ${CEP_LIBRARIES} ${QT_MODULES_LIBRARIES} ${XERCESC_LIBRARY} ${ITK_LIBRARIES} ${PYTHON_LIBRARIES} ${EXTERNAL_LIBRARIES})
-
-
-
- #########################################################################
- # #
- # OUTPUT #
- # #
- # * Define the output directory (location and name) #
- # * Define the output name of the library #
- # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
- # #
- #########################################################################
-
- # OUTPUT NAME
- if (MSVC)
- set_target_properties(${APPLICATION_TARGET_NAME}
- PROPERTIES OUTPUT_NAME camitk-${APPLICATION_NAME}
- DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX}
- )
- else()
- set_target_properties(${APPLICATION_TARGET_NAME}
- PROPERTIES OUTPUT_NAME camitk-${APPLICATION_NAME}
- )
- endif()
-
- # OUTPUT DIRECTORY LOCATION
- # always in bin folder
- set_target_properties(${APPLICATION_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
- RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
- RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
- )
-
- #########################################################################
- # #
- # INSTALLATION #
- # #
- # * When installing the project, header files (.h) and test data are #
- # copied into a installation folder to determine. #
- # * Indicate in this section, where to install your project and which #
- # files to copy into that folder (during local/global installation) #
- # #
- #########################################################################
-
- # FOLDER INSTALLATION
- # Indicate where to install the application
-# if (NOT APPLE)
- install(TARGETS ${APPLICATION_TARGET_NAME}
- RUNTIME DESTINATION bin
- COMPONENT ${APPLICATION_TARGET_NAME}
- )
- # else ()
-# set (PLUGINS QtCore QtGui QtXml QtXmlPatterns)
-# include(DeployQt4)
-# install_qt4_executable("bin/camitk-${APPLICATION_NAME}.app" "${PLUGINS}")
-# endif()
-
-
-
- #########################################################################
- # #
- # CDASH SUBPROJECT DESCRIPTION #
- # #
- # * Update the XML descriton of the subprojects dependenicies #
- # for CDash. #
- # #
- #########################################################################
- # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
- if(NOT ((APPLICATION_TARGET_NAME STREQUAL "application-testactions") OR (APPLICATION_TARGET_NAME STREQUAL "application-testcomponents")))
- # We will add manually the CDash dependencies of the testing applications
- # See CamiTKSubProjectValidate.cmake
- camitk_sub_project_add(APPLICATION ${APPLICATION_TARGET_NAME} DEPENDENCIES library-camitkcore ${COMPONENTS_DEPENDENCY_LIST} ${ACTIONS_DEPENDENCY_LIST} ${CEP_LIBRARIES_DEPENDENCY_LIST})
- endif()
-
-
-
- #########################################################################
- # #
- # TRANSLATION #
- # #
- # * CAMITK_TRANSLATIONS contains the list of language to translate #
- # the QString to. #
- # #
- # * Create the translate.pro file which contains 4 sections: #
- # - HEADERS: list of .h/.hpp files to look for tr("") QString#
- # - SOURCES: list of .cpp files to look for tr("") QString #
- # - FORMS: list of .ui files to look for tr("") QString #
- # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
- # to define each .ts file #
- # #
- # * Execute lupdate program to update the .ts files with new QString #
- # found. #
- # #
- # * Execute lrelease program to create .qm files (binary equivalent of#
- # .ts files #
- # #
- # * Create translate.qrc which contains the list of .qm files. #
- # * Create the flags.qrc file which contains the list of .png flags #
- # images #
- # #
- #########################################################################
- if(${APPLICATION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
- camitk_translate(EXTRA_LANGUAGE ${${APPLICATION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
- else()
- camitk_translate()
- endif()
-
-
- #########################################################################
- # #
- # PACKAGING CATEGORIZATION #
- # #
- # * On Windows, when building a package (win32 installer), the #
- # install shield wizard proposes you to select which component #
- # to install. #
- # * Each component to install has a short description following its #
- # name to understand its role. #
- # * This section deals with the categorization and the description #
- # of the component in this installer. #
- # #
- #########################################################################
-
- # WINDOWS INSTALLER CATEGORIZATION
- if(${APPLICATION_NAME_CMAKE}_CEP_NAME)
- if (${APPLICATION_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
- # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
- cpack_add_component(${APPLICATION_TARGET_NAME}
- DISPLAY_NAME ${APPLICATION_TARGET_NAME}
- DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
- REQUIRED
- GROUP SDK
- )
-
- else()
- # Extension is selectable for installation in the wizard of the installer
- cpack_add_component(${APPLICATION_TARGET_NAME}
- DISPLAY_NAME ${APPLICATION_TARGET_NAME}
- DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
- GROUP ${${APPLICATION_NAME_CMAKE}_CEP_NAME}
- )
- endif()
- else()
- # Extension if not categorized for packaging presentation
- cpack_add_component(${APPLICATION_TARGET_NAME}
- DISPLAY_NAME ${APPLICATION_TARGET_NAME}
- DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
- )
-
- endif()
-
- # additional unix system files/resources
- if(UNIX)
- # Man page installation
- set(${APPLICATION_NAME_CMAKE}_MAN_PAGE ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.1)
- if (EXISTS ${${APPLICATION_NAME_CMAKE}_MAN_PAGE})
- message(STATUS "Found man page for ${APPLICATION_TARGET_NAME}")
- install(FILES ${${APPLICATION_NAME_CMAKE}_MAN_PAGE}
- DESTINATION ${CAMITK_APPLICATION_MAN_INSTALL_DIR}
- )
- else()
- # check if .in exists
- if (EXISTS ${${APPLICATION_NAME_CMAKE}_MAN_PAGE}.in)
- message(STATUS "Found man page configuration file for ${APPLICATION_TARGET_NAME}")
- install(CODE "message(STATUS \"Updating ${APPLICATION_NAME} man page (version ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR} as of ${CURRENT_DATE})\")")
- # set variable in sub-cmake shell
- install(CODE "set(APPLICATION_NAME ${APPLICATION_NAME})")
- install(CODE "set(CURRENT_DATE ${CURRENT_DATE})")
- install(CODE "set(CAMITK_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})")
- install(CODE "set(CAMITK_VERSION_MINOR ${CAMITK_VERSION_MINOR})")
- # remove previous version
- install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1)")
- # configure current version
- install(CODE "configure_file(${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.1.in ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1 @ONLY)")
- # install file
- install(FILES ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1 DESTINATION ${CAMITK_APPLICATION_MAN_INSTALL_DIR})
- endif()
- endif()
-
- # Desktop file
- set(${APPLICATION_NAME_CMAKE}_DESKTOP ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.desktop)
- if (EXISTS ${${APPLICATION_NAME_CMAKE}_DESKTOP})
- message(STATUS "Found desktop file for ${APPLICATION_TARGET_NAME}")
- install(FILES ${${APPLICATION_NAME_CMAKE}_DESKTOP} DESTINATION ${CAMITK_APPLICATION_DESKTOP_INSTALL_DIR})
- endif()
-
- # application pixmap
- set(${APPLICATION_NAME_CMAKE}_PIXMAP ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.xpm)
- if (EXISTS ${${APPLICATION_NAME_CMAKE}_PIXMAP})
- message(STATUS "Found pixmap for ${APPLICATION_TARGET_NAME}")
- install(FILES ${${APPLICATION_NAME_CMAKE}_PIXMAP} DESTINATION ${CAMITK_APPLICATION_PIXMAP_INSTALL_DIR})
- endif()
-
- endif()
-
- endif() #APPLICATION_${APPLICATION_NAME_CMAKE}
-
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKCEPPackaging.cmake b/sdk/cmake/modules/macros/CamiTKCEPPackaging.cmake
deleted file mode 100644
index 27b85fc..0000000
--- a/sdk/cmake/modules/macros/CamiTKCEPPackaging.cmake
+++ /dev/null
@@ -1,490 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! CamiTK cep packaging allows you to build a package from a CEP
-#! If README and COPYRIGHT files exists at top source dir, then
-#! they will be included in the source package
-#!
-#! Usage:
-#! \code
-#! camitk_cep_packaging(DESCRIPTION "CEP package description"
-#! [NAME packageName]
-#! [VENDOR vendorName]
-#! [CONTACT contactName]
-#! )
-#! \endcode
-#!
-# \param DESCRIPTION Some comments on what is this CEP package about
-#! \param NAME (optional) Specify the package name (default is project name)
-#! \param VENDOR (optional) Specify the vendor name (default is TIMC-IMAG)
-#! \param CONTACT (optional) Specify the contact name (default is link to CamiTK website)
-#! \param APPLICATIONS (optional) If you want to package some applications
-#!
-#! When configuring CMake, do not forget to set the CMAKE_INSTALL_PREFIX correctly (e.g., /usr on Linux)
-#! It will always use the CamiTK install directory as install prefix (install where the core is already)
-#!
-#! To generate deb package add this to the cmake configuration line: -DCPACK_BINARY_DEB:BOOL=TRUE
-#! To generate rpm package add this to the cmake configuration line: -DCPACK_BINARY_RPM:BOOL=TRUE
-macro(camitk_cep_packaging)
-
-# CEP Packaging only works for stand-alone CEP
-if (NOT CAMITK_EXTENSION_PROJECT_SET)
-
-parse_arguments(CAMITK_CEP_PACKAGING
- "NAME;VENDOR;CONTACT;APPLICATIONS;DESCRIPTION;LICENSE" # possible lists
- "" # possible option
- ${ARGN}
-)
-
-# Clean list of targets by removing duplicates
-# Those may appear if configuring more than once (i.e. by manually clicking more than once on the CMake configure
-# button before generating
-list(REMOVE_DUPLICATES CAMITK_ACTION_TARGETS)
-list(REMOVE_DUPLICATES CAMITK_COMPONENT_TARGETS)
-list(REMOVE_DUPLICATES CAMITK_CEP_LIBRARY_TARGETS)
-list(REMOVE_DUPLICATES CAMITK_APPLICATION_TARGETS)
-
-# package named
-if (CAMITK_CEP_PACKAGING_NAME)
- set(PACKAGING_NAME ${CAMITK_CEP_PACKAGING_NAME})
-else()
- # package name is project name
- set(PACKAGING_NAME ${CMAKE_PROJECT_NAME})
-endif()
-string(TOLOWER ${PACKAGING_NAME} CPACK_PACKAGE_NAME)
-set(CPACK_PACKAGE_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})
-set(CPACK_PACKAGE_VERSION_MINOR ${CAMITK_VERSION_MINOR})
-set(CPACK_PACKAGE_VERSION_PATCH "0")
-string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
-
-# contact information
-if (CAMITK_CEP_PACKAGING_VENDOR)
- set(CPACK_PACKAGE_VENDOR ${CAMITK_CEP_PACKAGING_VENDOR})
-else()
- set(CPACK_PACKAGE_VENDOR "UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525")
-endif()
-if (CAMITK_CEP_PACKAGING_CONTACT)
- set(CPACK_PACKAGE_CONTACT ${CAMITK_CEP_PACKAGING_CONTACT})
-else()
- set(CPACK_PACKAGE_CONTACT "http://camitk.imag.fr")
-endif()
-
-# resource files
-if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/README")
- set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
-endif()
-if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
- set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
-endif()
-
-# applications / executable
-set(EXECUTABLES_TO_PACKAGE)
-foreach(APPLICATION_TARGET_NAME ${CAMITK_APPLICATION_TARGETS})
- # name and label are the same
- set(EXECUTABLES_TO_PACKAGE ${EXECUTABLES_TO_PACKAGE} ${APPLICATION_TARGET_NAME} ${APPLICATION_TARGET_NAME})
-endforeach()
-set(CPACK_PACKAGE_EXECUTABLES ${EXECUTABLES_TO_PACKAGE})
-
-# package description
-set(CPACK_PACKAGE_DESCRIPTION_SUMMARY ${CAMITK_CEP_PACKAGING_DESCRIPTION})
-
-# Files to ignore during generation of the package
-set(CPACK_SOURCE_IGNORE_FILES
-"~$"
-"/CVS/"
-"tags"
-"/\\\\.svn/"
-"/\\\\.git/"
-"/kdev4$/"
-"/build/"
-"\\\\.kdevses$"
-"\\\\.kdev4$"
-"\\\\.kdevelop\\\\.pcs$"
-".DS_Store"
-${CPACK_SOURCE_IGNORE_FILES}
-)
-
-set(CPACK_SOURCE_GENERATOR "TGZ" "ZIP" )
-
-# ----------------------------------
-# Unix packages (Ubuntu and Debian)
-# ----------------------------------
-if (UNIX AND NOT WIN32)
-
- message(STATUS "Packaging ${CPACK_PACKAGE_NAME} for UNIX systems")
- # Try to find architecture
- execute_process(COMMAND uname -m OUTPUT_VARIABLE CPACK_PACKAGE_ARCHITECTURE)
- string(STRIP "${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_ARCHITECTURE)
- # Try to find distro name and distro-specific arch
- execute_process(COMMAND lsb_release -is OUTPUT_VARIABLE LSB_ID)
- execute_process(COMMAND lsb_release -rs OUTPUT_VARIABLE LSB_RELEASE)
- string(STRIP "${LSB_ID}" LSB_ID)
- string(STRIP "${LSB_RELEASE}" LSB_RELEASE)
- set(LSB_DISTRIB "${LSB_ID}${LSB_RELEASE}")
- if(NOT LSB_DISTRIB)
- set(LSB_DISTRIB "unix")
- endif(NOT LSB_DISTRIB)
- message(STATUS "Packager architecture : ${LSB_DISTRIB}")
-
- #Find DPKG
- find_program(DPKG
- NAMES dpkg-deb
- PATHS "/usr/bin" #Add paths here
- )
- if ( DPKG )
- get_filename_component(DPKG_PATH ${DPKG} ABSOLUTE)
- message(STATUS "Packaging deb using ${DPKG_PATH}: OK")
- set(DPKG_FOUND "YES")
- else()
- set(DPKG_FOUND "NO")
- endif()
-
- # For Debian-based distribs we want to create DEB packages.
- if("${LSB_DISTRIB}" MATCHES "Ubuntu|Debian")
-
- # We need to alter the architecture names as per distro rules
- if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "i[3-6]86")
- set(CPACK_PACKAGE_ARCHITECTURE i386)
- endif()
- if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "x86_64")
- set(CPACK_PACKAGE_ARCHITECTURE amd64)
- endif()
- # Set the dependencies based on the distrib version
-
- # Installation path
- # Set the install location to "/usr"
- # set(CAMITK_INSTALL_ROOT "/usr") # Set the CamiTK install root path in your CMake command line / GUI.
- set(CPACK_PACKAGING_INSTALL_PREFIX "/usr")
- set(CPACK_PACKAGE_DEFAULT_LOCATION "/usr")
- set(CPACK_SET_DESTDIR TRUE)
-
- # Dependencies depending on the Operating System.
- # Ubuntu11.10
- if("${LSB_DISTRIB}" MATCHES "Ubuntu11.10")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.6-qt4, libxerces-c3.1 ")
- endif()
- # For Ubuntu12.04
- if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04")
- set(LSB_DISTRIB "Ubuntu12.xx")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
- endif()
- if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04.1")
- set(LSB_DISTRIB "Ubuntu12.xx")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
- endif()
- # For Ubuntu12.10
- if("${LSB_DISTRIB}" MATCHES "Ubuntu12.10")
- set(LSB_DISTRIB "Ubuntu12.xx")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
- endif()
-
- # TODO Debian dependencies (see CamiTKPackaging.cmake)
-
- if(NOT CPACK_DEBIAN_PACKAGE_DEPENDS)
- message(STATUS "Packaging for ${LSB_DISTRIB} not supported yet.\nPlease set deps in cmake/darktable-packaging.cmake before packaging.")
- endif()
-
- endif()
-
- # package name
- string(TOLOWER "${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
-
-endif()
-
-
-
-if(WIN32 AND NOT UNIX)
- # -----------------------
- # NSIS Windows installer
- # -----------------------
-
- # Update package name for windows release
- set(LSB_DISTRIB "win32")
- set(CPACK_PACKAGE_ARCHITECTURE i386)
- string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${CAMITK_VER_NICKNAME}-${LSB_DISTRIB}" CPACK_PACKAGE_FILE_NAME)
-
- # Try to find Makensis on Linux distribution
- find_program(MAKENSIS
- NAMES makensis
- PATHS "/usr/bin"
- )
-
- if(MAKENSIS)
- set(ITK_ROOT_DIR "C:/dev/ITK/3.20.1")
-
- # MinGW compiler
- if ("${CMAKE_GENERATOR}" MATCHES "MinGW Makefiles")
- # NSIS Windows installer
- message(STATUS "Packaging nsis using ${MAKENSIS} with MinGW compiler")
- # Qt dependencies
- set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
- ##TODO use GetPrerequisites.cmake (i.e. find a better way to list dependencies)
- ##get_prerequisites() is not well enough documented to justify the time investement - EP May 2011
- ${QT_BINARY_DIR}/QtCore4.dll
- ${QT_BINARY_DIR}/QtGui4.dll
- ${QT_BINARY_DIR}/QtSvg4.dll
- ${QT_BINARY_DIR}/QtXml4.dll
- ${QT_BINARY_DIR}/QtNetwork4.dll
- ${QT_BINARY_DIR}/QtSql4.dll
- ${QT_BINARY_DIR}/QtWebKit4.dll
- # VTK dependencies
- ${VTK_LIBRARY_DIRS}/libQVTK.dll
- ${VTK_LIBRARY_DIRS}/libvtkCommon.dll
- ${VTK_LIBRARY_DIRS}/libvtksys.dll
- ${VTK_LIBRARY_DIRS}/libvtkFiltering.dll
- ${VTK_LIBRARY_DIRS}/libvtkGraphics.dll
- ${VTK_LIBRARY_DIRS}/libvtkHybrid.dll
- ${VTK_LIBRARY_DIRS}/libvtkIO.dll
- ${VTK_LIBRARY_DIRS}/libvtkImaging.dll
- ${VTK_LIBRARY_DIRS}/libvtkRendering.dll
- ${VTK_LIBRARY_DIRS}/libvtkVolumeRendering.dll
- ${VTK_LIBRARY_DIRS}/libvtkverdict.dll
- ${VTK_LIBRARY_DIRS}/libvtkDICOMParser.dll
- ${VTK_LIBRARY_DIRS}/libvtkNetCDF.dll
- ${VTK_LIBRARY_DIRS}/libvtkNetCDF_cxx.dll
- ${VTK_LIBRARY_DIRS}/libvtkexpat.dll
- ${VTK_LIBRARY_DIRS}/libvtkjpeg.dll
- ${VTK_LIBRARY_DIRS}/libvtkmetaio.dll
- ${VTK_LIBRARY_DIRS}/libvtkpng.dll
- ${VTK_LIBRARY_DIRS}/libvtktiff.dll
- ${VTK_LIBRARY_DIRS}/libvtkzlib.dll
- ${VTK_LIBRARY_DIRS}/libvtkInfovis.dll
- ${VTK_LIBRARY_DIRS}/libvtkfreetype.dll
- ${VTK_LIBRARY_DIRS}/libvtkftgl.dll
- ${VTK_LIBRARY_DIRS}/libvtkalglib.dll
- ${VTK_LIBRARY_DIRS}/libvtklibxml2.dll
- ${VTK_LIBRARY_DIRS}/libvtkViews.dll
- ${VTK_LIBRARY_DIRS}/libvtkexoIIc.dll
- ${VTK_LIBRARY_DIRS}/libvtkWidgets.dll
- ${VTK_LIBRARY_DIRS}/vtkhdf5.dll
- ${VTK_LIBRARY_DIRS}/vtkhdf5_hl.dll
- ${VTK_LIBRARY_DIRS}/libLSDyna.dll
- # Xerces-c dependency
- # ${XERCESC_ROOT_DIR}/bin/xerces-c_3_1.dll
- # Libxml2 dependencies
- # ${LIBXML2_INCLUDE_DIR}/../bin/iconv.dll
- C:/dev/libxml2/2.8/bin/libxml2-2.dll
- # ${LIBXML2_INCLUDE_DIR}/../bin/zlib1.dll
- # ITK dependency
- ${ITK_ROOT_DIR}/bin/libITKAlgorithms.dll
- ${ITK_ROOT_DIR}/bin/libITKCommon.dll
- ${ITK_ROOT_DIR}/bin/libITKBasicFilters.dll
- ${ITK_ROOT_DIR}/lib/InsightToolkit/libitksys.dll
- ${ITK_ROOT_DIR}/bin/libitkvnl.dll
- ${ITK_ROOT_DIR}/bin/libitkvnl_algo.dll
- ${ITK_ROOT_DIR}/bin/libITKIO.dll
- ${ITK_ROOT_DIR}/bin/libitkv3p_lsqr.dll
- ${ITK_ROOT_DIR}/bin/libitkv3p_netlib.dll
- ${ITK_ROOT_DIR}/bin/libITKDICOMParser.dll
- ${ITK_ROOT_DIR}/bin/libITKEXPAT.dll
- ${ITK_ROOT_DIR}/bin/libitkgdcm.dll
- ${ITK_ROOT_DIR}/bin/libitkjpeg8.dll
- ${ITK_ROOT_DIR}/bin/libITKMetaIO.dll
- ${ITK_ROOT_DIR}/bin/libITKniftiio.dll
- ${ITK_ROOT_DIR}/bin/libITKNrrdIO.dll
- ${ITK_ROOT_DIR}/bin/libitkpng.dll
- ${ITK_ROOT_DIR}/bin/libitktiff.dll
- ${ITK_ROOT_DIR}/bin/libitkzlib.dll
- ${ITK_ROOT_DIR}/bin/libitkjpeg12.dll
- ${ITK_ROOT_DIR}/bin/libitkjpeg16.dll
- ${ITK_ROOT_DIR}/bin/libitkopenjpeg.dll
- ${ITK_ROOT_DIR}/bin/libITKznz.dll
- # MinGW Dependencies
- C:/dev/MinGW/bin/libgcc_s_dw2-1.dll
- C:/dev/MinGW/bin/libstdc++-6.dll
- C:/dev/MinGW/bin/mingwm10.dll
- )
-
- endif()
-
- # MSVC compiler
- if (MSVC)
-
- message(STATUS "Packaging nsis using ${MAKENSIS} with MSVC compiler")
-
- set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
- ##TODO use GetPrerequisites.cmake (i.e. find a better way to list dependencies)
- ##get_prerequisites() is not well enough documented to justify the time investement - EP May 2011
- # Qt dependencies
- ${QT_BINARY_DIR}/QtCore4.dll
- ${QT_BINARY_DIR}/QtGui4.dll
- ${QT_BINARY_DIR}/QtSvg4.dll
- ${QT_BINARY_DIR}/QtXml4.dll
- ${QT_BINARY_DIR}/QtNetwork4.dll
- ${QT_BINARY_DIR}/QtSql4.dll
- ${QT_BINARY_DIR}/QtWebKit4.dll
- # VTK dependencies
- ${VTK_DIR}/../../bin/QVTK.dll
- ${VTK_DIR}/../../bin/vtkCommon.dll
- ${VTK_DIR}/../../bin/vtksys.dll
- ${VTK_DIR}/../../bin/vtkFiltering.dll
- ${VTK_DIR}/../../bin/vtkGraphics.dll
- ${VTK_DIR}/../../bin/vtkHybrid.dll
- ${VTK_DIR}/../../bin/vtkIO.dll
- ${VTK_DIR}/../../bin/vtkImaging.dll
- ${VTK_DIR}/../../bin/vtkRendering.dll
- ${VTK_DIR}/../../bin/vtkVolumeRendering.dll
- ${VTK_DIR}/../../bin/vtkverdict.dll
- ${VTK_DIR}/../../bin/vtkDICOMParser.dll
- ${VTK_DIR}/../../bin/vtkNetCDF.dll
- ${VTK_DIR}/../../bin/vtkNetCDF_cxx.dll
- ${VTK_DIR}/../../bin/vtkexpat.dll
- ${VTK_DIR}/../../bin/vtkjpeg.dll
- ${VTK_DIR}/../../bin/vtkmetaio.dll
- ${VTK_DIR}/../../bin/vtkpng.dll
- ${VTK_DIR}/../../bin/vtktiff.dll
- ${VTK_DIR}/../../bin/vtkzlib.dll
- ${VTK_DIR}/../../bin/vtkInfovis.dll
- ${VTK_DIR}/../../bin/vtkfreetype.dll
- ${VTK_DIR}/../../bin/vtkftgl.dll
- ${VTK_DIR}/../../bin/vtkalglib.dll
- ${VTK_DIR}/../../bin/vtklibxml2.dll
- ${VTK_DIR}/../../bin/vtkViews.dll
- ${VTK_DIR}/../../bin/vtkexoIIc.dll
- ${VTK_DIR}/../../bin/vtkWidgets.dll
- ${VTK_DIR}/../../bin/vtkhdf5.dll
- ${VTK_DIR}/../../bin/vtkhdf5_hl.dll
- ${VTK_DIR}/../../bin/LSDyna.dll
- # Xerces-c dependency
- ${XERCESC_ROOT_DIR}/bin/xerces-c_3_1.dll
- # Libxml2 dependencies
- ${LIBXML2_INCLUDE_DIR}/../bin/iconv.dll
- ${LIBXML2_INCLUDE_DIR}/../bin/libxml2.dll
- ${LIBXML2_INCLUDE_DIR}/../bin/zlib1.dll
- # ITK dependency
- ${ITK_DIR}/../../bin/ITKCommon.dll
- )
- endif()
-
- # Copy those dependencies DLLs if packaging on Windows.
- if (PACKAGING_NSIS)
- include(InstallRequiredSystemLibraries)
- endif()
-
- # Application icon
- set(CAMITK_PACKAGE_ICON "${CMAKE_CURRENT_SOURCE_DIR}\\\\core\\\\resources\\\\appIcon.ico") #set here the current icon for CamiTK apps
- set(CPACK_PACKAGE_ICON ${CAMITK_PACKAGE_ICON}) #icon for the top bar NSIS installer
- set(CPACK_NSIS_MUI_ICON ${CAMITK_PACKAGE_ICON}) #icon for the generated install program (the .exe to run to install CamiTK).
- set(CPACK_NSIS_MUI_UNIICON ${CAMITK_PACKAGE_ICON}) #icon for the generated uninstall program (the .exe to run to uninstall CamiTK).
-
-
- # Installer name
- set(CPACK_NSIS_DISPLAY_NAME "${CPACK_PACKAGE_NAME} ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
- set(CPACK_NSIS_INSTALLED_ICON_NAME ${CPACK_PACKAGE_NAME})
-
- set(CPACK_PACKAGE_INSTALL_DIRECTORY ${CPACK_PACKAGE_NAME})
- set(CPACK_NSIS_HELP_LINK "http:\\\\\\\\camitk.imag.fr")
- set(CPACK_NSIS_URL_INFO_ABOUT "http:\\\\\\\\camitk.imag.fr")
- set(CPACK_NSIS_CONTACT ${CPACK_PACKAGE_CONTACT})
- include(InstallRequiredSystemLibraries)
- else()
- message(STATUS "Can not find makensis: nsis packaging is not possible")
- endif()
-
-endif()
-
-# ---------------
-# Mac App Bundle
-# ---------------
-if(APPLE)
- # TODO test this!
- set(CPACK_GENERATOR "PackageMaker")
- # Libraries are bundled directly
- set(CPACK_COMPONENT_LIBRARIES_HIDDEN TRUE)
- # Bundle Properties
- set(MACOSX_BUNDLE_BUNDLE_NAME ${CPACK_PACKAGE_NAME})
- set(MACOSX_BUNDLE_BUNDLE_VERSION ${PROJECT_VERSION})
- set(MACOSX_BUNDLE_SHORT_VERSION_STRING ${PROJECT_VERSION})
- set(MACOSX_BUNDLE_LONG_VERSION_STRING "Version ${PROJECT_VERSION}")
-endif()
-
-# and here we go...
-include(CPack)
-
-# ----------------------------
-# CamiTK's own package (.cep)
-# ----------------------------
-# TODO install a CEP in CamiTK
-# TODO CamiTK Market Place
-set(CEP_PACKAGING_DIR "${CMAKE_BINARY_DIR}/CamiTKExtensionPackage")
-set(CEP_PACKAGE_NAME "${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.cep")
-
-add_custom_target(camitk_extension_${PROJECT_NAME}_package
- # configure for packaging
- COMMAND ${CMAKE_COMMAND} -DPACKAGING_NSIS:BOOL=ON ${CMAKE_BINARY_DIR}
- # build first
- COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR}
- # clean CEP package structure
- COMMAND ${CMAKE_COMMAND} -E remove_directory "${CEP_PACKAGING_DIR}"
- COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_BINARY_DIR}/${CEP_PACKAGE_NAME}
- COMMAND ${CMAKE_COMMAND} -E make_directory "${CEP_PACKAGING_DIR}"
- COMMAND ${CMAKE_COMMAND} -E make_directory "${CEP_PACKAGING_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cep"
- # copy all cep files
- COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/lib" "${CEP_PACKAGING_DIR}/lib"
- COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/bin" "${CEP_PACKAGING_DIR}/bin"
- COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/include" "${CEP_PACKAGING_DIR}/include"
- COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/share" "${CEP_PACKAGING_DIR}/share"
- # copy cep manifest
- COMMAND ${CMAKE_COMMAND} -E copy_if_different ${CMAKE_BINARY_DIR}/CEPPackageManifest.xml ${CEP_PACKAGING_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cep/${CPACK_PACKAGE_NAME}.xml
- # compress
- COMMAND ${CMAKE_COMMAND} -E tar cvz "${CMAKE_BINARY_DIR}/${CEP_PACKAGE_NAME}" "${CEP_PACKAGING_DIR}/"
- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
- # configure back for normal build
- COMMAND ${CMAKE_COMMAND} -DPACKAGING_NSIS:BOOL=OFF ${CMAKE_BINARY_DIR}
- COMMENT "Building ${CEP_PACKAGE_NAME}"
-)
-
-#-- Build Manifest
-# get the time stamp
-execute_process(COMMAND "${CAMITK_DIR}/bin/camitk-config" "--timeStamp"
- RESULT_VARIABLE CAMITK_CONFIG_TIMESTAMP_RETURN_CODE
- OUTPUT_VARIABLE CAMITK_CONFIG_TIMESTAMP_OUTPUT
- ERROR_VARIABLE CAMITK_CONFIG_TIMESTAMP_OUTPUT_ERROR
- OUTPUT_STRIP_TRAILING_WHITESPACE
- ERROR_STRIP_TRAILING_WHITESPACE
-)
-
-# Generate XML
-set(CEP_PACKAGE_MANIFEST_XML "<?xml version=\"1.0\"?>\n<cep>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <!-- CamiTK Extension Project Manifest File -->")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <name>${CPACK_PACKAGE_NAME}</name>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <contact>${CAMITK_CEP_PACKAGING_CONTACT}</contact>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <description>${CAMITK_CEP_PACKAGING_DESCRIPTION}</description>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <license>${CAMITK_CEP_PACKAGING_LICENSE}</license>")
-if (NOT CAMITK_CONFIG_TIMESTAMP_RETURN_CODE)
- set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <timeStamp>${CAMITK_CONFIG_TIMESTAMP_OUTPUT}</timeStamp>")
-endif()
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <actions>")
-foreach(TARGET_NAME_ITERATOR ${CAMITK_ACTION_TARGETS})
- string(REPLACE "action-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
- set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <action>${TARGET_NAME}</action>")
-endforeach()
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </actions>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <components>")
-foreach(TARGET_NAME_ITERATOR ${CAMITK_COMPONENT_TARGETS})
- string(REPLACE "component-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
- set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <component>${TARGET_NAME}</component>")
-endforeach()
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </components>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <libraries>")
-foreach(TARGET_NAME_ITERATOR ${CAMITK_CEP_LIBRARY_TARGETS})
- set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <library>${TARGET_NAME_ITERATOR}</library>")
-endforeach()
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </libraries>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <applications>")
-foreach(TARGET_NAME_ITERATOR ${CAMITK_APPLICATION_TARGETS})
- string(REPLACE "application-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
- set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <application>${TARGET_NAME}</application>")
-endforeach()
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </applications>")
-set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} "</cep>")
-# replace all ";" by \n
-string (REGEX REPLACE "([^\\]|^);" "\\1\n" CEP_PACKAGE_MANIFEST_XML_TMP "${CEP_PACKAGE_MANIFEST_XML}")
-string (REGEX REPLACE "[\\](.)" "\\1" CEP_PACKAGE_MANIFEST_XML_TEXT "${CEP_PACKAGE_MANIFEST_XML_TMP}") #fixes escaping
-# write manifest
-file(WRITE ${CMAKE_BINARY_DIR}/CEPPackageManifest.xml ${CEP_PACKAGE_MANIFEST_XML_TEXT})
-message(STATUS "Generated CEP manifest in CEPPackageManifest.xml")
-
-
-endif() # Standalone CEP
-endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/CamiTKExtension.cmake b/sdk/cmake/modules/macros/CamiTKExtension.cmake
deleted file mode 100644
index 24bc376..0000000
--- a/sdk/cmake/modules/macros/CamiTKExtension.cmake
+++ /dev/null
@@ -1,1512 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! Macro camitk_extension simplifies writing a camitk extension (component, action)
-#!
-#! The name of the extension is automatically the name of the directory from where this macro
-#! is called, unless it is overriden by the TARGET_NAME parameter.
-#!
-#! usage:
-#! \code
-#! camitk_extension( <type>
-#! [DISABLED]
-#! [NEEDS_QT_MODULES]
-#! [NEEDS_ITK]
-#! [NEEDS_LIBXML2]
-#! [NEEDS_OPENCV]
-#! [NEEDS_IGSTK]
-#! [NEEDS_XSD]
-#! [NEEDS_GDCM]
-#! [NEEDS_ACTION_EXTENSION action1 action2 ...]
-#! [NEEDS_COMPONENT_EXTENSION component1 component2 ...]
-#! [NEEDS_CEP_LIBRARIES CEPLib1 CEPLib2 ...]
-#! [INCLUDE_DIRECTORIES dir1 dir2 ...]
-#! [DEFINES flag1 flag2 ...]
-#! [CXX_FLAGS flag1 flag2 ...]
-#! [EXTERNAL_SOURCES file1 file2 ...]
-#! [EXTERNAL_LIBRARIES lib1 lib2 ...]
-#! [HEADERS_TO_INSTALL header1.h header2.h ...]
-#! [INSTALL_ALL_HEADERS]
-#! [TARGET_NAME non-default-targetname]
-#! [TEST_APPLICATION application-name]
-#! [DESCRIPTION description]
-#! [EXTRA_TRANSLATE_LANGUAGE]
-#! [TEST_FILES file1 file2 ...]
-#! )
-#! \endcode
-#!
-#! \param <type> = REQUIRED. The selected type of extension you wish to build.
-# possible values : ACTION_EXTENSION or COMPONENT_EXTENSION.
-#! \param DISABLED = means this is a not a default extension, it will not be compiled automatically
-#! \param NEEDS_QT_MODULES = add this if your library depends on Qt modules, such as QtCore, QtGui, QtMultimedia, QtNetwork, QtOpenGL, QtScript, QtScriptTools, QtSql, QtSvg, QtWebkit, QtXml, QtXmlPatterns, QtDeclarative
-#! \param NEEDS_ITK = add this if your component needs ITK.
-#! Do not forget to add the needed list of ITK libraries in the LIBRARIES parameter
-#! \param NEEDS_LIBXML2 = add this if your component needs libxml2
-#! \param NEEDS_XSD = add this if your action needs Codesynthesis xsd cxx (xml schema compiler)
-#! \param NEEDS_OPENCV = add this if your component needs OpenCV
-#! \param NEEDS_IGSTK = add this if your component needs IgsTK
-#! \param NEEDS_XERCESC = add this if your action / component needs XercesC library
-#! \param NEEDS_GDCM = Add this, if your extension requires GDCM 2.x library
-#! \param NEEDS_CEP_LIBRARIES = list of needed CEP libraries (not external dependencies)
-#! \param NEEDS_COMPONENT_EXTENSION = list of needed component extensions
-#! \param NEEDS_ACTION_EXTENSION = list of needed component extensions
-#! \param INCLUDE_DIRECTORIES = additional include directories
-#! \param DEFINES = list of define flags to add at compilation time.
-#! \param CXX_FLAGS = list of compiler flags to add (such as warning levels (-Wall ...)).
-#! \param EXTERNAL_SOURCES = list of extra source/headers files (external to the current directory)
-#! that needed to be added to the SOURCES variable.
-#! Note: EXTERNAL_SOURCES are not installed
-#! \param EXTERNAL_LIBRARIES = external libraries to add to the link command
-#! \param HEADERS_TO_INSTALL = list of headers to install, if present this will automatically
-#! create an "install-COMPONENT_NAMEcomponent" target, that can be used
-#! anywhere else to manage dependencies to this component.
-#! The headers are installed ${CAMITK_BUILD_INCLUDE_DIR}/COMPONENT_NAME
-#! when the target "install-COMPONENT_NAMEcomponent" is called.
-#! \param INSTALL_ALL_HEADERS = install all of the headers (this is the lazy solution, please consider
-#! making a list and using HEADERS_TO_INSTALL parameter instead!
-#! \param TARGET_NAME = specify a target name different than the default (default is the action/component directory name)
-#! this can be very useful for example when you have action/component directory in your CEP that has
-#! the same name as one in the camitk opensource.
-#! \param CEP_NAME = specify the CEP_NAME, which is used to categorized the extension for packaging purpose
-#! No CEP_NAME provided will result in default categorization (generic extension).
-#! \param TEST_APPLICATION = The name of the application to provide for generate automatic basic tests on your extension. No option means no tests!
-#! \param DESCRIPTION = Simple description of the extension. Used for packaging presentation for instance.
-#! \param EXTRA_TRANSLATE_LANGUAGE = Additionnal extra language to translate the application
-#! \param TEST_FILES = Parameter of TestActions module : REQUIRED. List of files on which the action must applied.
-
-macro(camitk_extension)
-
- #########################################################################
- # #
- # ARGUMENTS PARSING #
- # #
- # * Use a macro to create the CMAKE variables according to the #
- # provided options as input. #
- # #
- #########################################################################
-
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} EXTENSION_NAME)
-
- parse_arguments(${EXTENSION_NAME_CMAKE} #prefix
- "NEEDS_TOOL;NEEDS_CEP_LIBRARIES;NEEDS_COMPONENT_EXTENSION;NEEDS_ACTION_EXTENSION;INCLUDE_DIRECTORIES;EXTERNAL_LIBRARIES;HEADERS_TO_INSTALL;DEFINES;CXX_FLAGS;EXTERNAL_SOURCES;TARGET_NAME;CEP_NAME;DESCRIPTION;TEST_APPLICATION;EXTRA_TRANSLATE_LANGUAGE;TEST_FILES" # possible lists
- "NEEDS_QT_MODULES;ACTION_EXTENSION;COMPONENT_EXTENSION;DISABLED;NEEDS_XERCESC;NEEDS_ITK;NEEDS_LIBXML2;NEEDS_XSD;NEEDS_QTXML;NEEDS_OPENCV;NEEDS_IGSTK;INSTALL_ALL_HEADERS;NEEDS_GDCM;DISABLE_TESTLEVEL1;DISABLE_TESTLEVEL2;DISABLE_TESTLEVEL3" # possible options
- ${ARGN}
- )
-
-
-
- #########################################################################
- # #
- # CREATE CMAKE VARIABLES #
- # #
- # * Create required and useful CMake variables for the macro #
- # #
- #########################################################################
-
- # TYPE EXTENSION : ACTION or COMPONENT
- if (${EXTENSION_NAME_CMAKE}_ACTION_EXTENSION)
- set(TYPE_EXTENSION "action")
- string(TOUPPER ${TYPE_EXTENSION} TYPE_EXTENSION_CMAKE)
- elseif(${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION)
- set(TYPE_EXTENSION "component")
- string(TOUPPER ${TYPE_EXTENSION} TYPE_EXTENSION_CMAKE)
- endif()
-
- # CMAKE CACHE VARIABLE
- # if it is the first cmake run, create the extension variable with a correct initial value
- if(NOT ${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_INTERNAL)
- # add option to enable/disable this extension and set it to true by default
- # Building the extension can be disabled by giving the argument DISABLED to the macro
- # or by passing the flag -D${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_DISABLED:BOOL=TRUE
- if(${EXTENSION_NAME_CMAKE}_DISABLED)
- set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED FALSE)
- else()
- set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED TRUE)
- endif()
- set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE} ${${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED} CACHE BOOL "Build extension ${EXTENSION_NAME}")
- set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable ${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME} already created?")
- endif()
-
- # if this extension is enabled, do everything needed
- # otherwise... do nothing
- if (${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE})
-
- # TARGET NAME
- # The target name is composed of the following: [action / component]-name
- # * action / component is the type of extension as prefix
- # * name is deduced from the input folder containing the calling CMakeLists.txt file of the extension.
- if (${EXTENSION_NAME_CMAKE}_TARGET_NAME)
- set(${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME ${${EXTENSION_NAME_CMAKE}_TARGET_NAME})
- else()
- set(${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME ${EXTENSION_NAME})
- endif()
- # replace "-" by "_" if the extension is being packaged with NSIS, the program to create a Windows installer.
- if (PACKAGING_NSIS)
- # NSIS requires that cpack component names do not feature space or "-" characters
- set(${TYPE_EXTENSION_CMAKE}_TARGET_NAME ${TYPE_EXTENSION}_${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME})
- else()
- set(${TYPE_EXTENSION_CMAKE}_TARGET_NAME ${TYPE_EXTENSION}-${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME})
- endif()
-
- message(STATUS "Building extension ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}")
-
-
-
- #########################################################################
- # #
- # INCLUDE DIRECTORIES #
- # #
- # * Include basic directories where to look header files #
- # * Include also additional user provided directories #
- # * These directories are used for compilation step #
- # #
- #########################################################################
- # BASIC DIRECTORIES
-
- include_directories(${CAMITK_INCLUDE_DIRECTORIES})
- include_directories(${CMAKE_CURRENT_BINARY_DIR})
- include_directories(${CMAKE_CURRENT_SOURCE_DIR})
-
- # USER INPUT DIRECTORIES
- include_directories(${${EXTENSION_NAME_CMAKE}_INCLUDE_DIRECTORIES})
-
-
-
- #########################################################################
- # #
- # GATHER RESSOURCES #
- # #
- # * Get all the headers (.h) and source files (.cpp) of the project #
- # * Create the needed Qt files (using moc and uic) #
- # #
- #########################################################################
-
- # get all headers, sources and do what is needed for Qt
- # one need to do this just before the add_library so that all defines, include directories and link directories
- # are set properly (gather_headers_and_sources include the call to Qt moc and uic)
- gather_headers_and_sources(${EXTENSION_NAME_CMAKE})
-
-
-
- #########################################################################
- # #
- # ADDITIONAL KNOWN EXTERNAL LIBRARY DEPENDENCIES #
- # #
- # * Look for specific library needed #
- # * Specific libraries are specified as option with the #
- # NEEDS_LIBRARY syntax (see macro syntax for more options) #
- # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
- # #
- #########################################################################
-
- # Looking for ITK
- set(ITK_LIBRARIES "")
- if(${EXTENSION_NAME_CMAKE}_NEEDS_ITK)
- find_package(ITK REQUIRED)
- if(ITK_FOUND)
- include(${ITK_USE_FILE})
- set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
- message(STATUS "${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
-
- # Now select the ITK libraries according to the ITK version found.
- # ITK 3.x.x (mostly 3.20.1)
- if ((${ITK_VERSION} VERSION_GREATER "3") AND (${ITK_VERSION} VERSION_LESS "4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- set(ITK_LIBRARIES
- debug ITKAlgorithms${CAMITK_DEBUG_POSTFIX}
- optimized ITKAlgorithms
- debug ITKBasicFilters${CAMITK_DEBUG_POSTFIX}
- optimized ITKBasicFilters
- debug ITKCommon${CAMITK_DEBUG_POSTFIX}
- optimized ITKCommon
- debug ITKIO${CAMITK_DEBUG_POSTFIX}
- optimized ITKIO
- debug ITKNrrdIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcm${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg12${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg16${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg8${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObject${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_inst${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- )
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- message(FATAL_ERROR "It seems you have ITK version 3.x installed. This one is not compatible with Visual Studio 2012 or 2013. Please install ITK 4.3.x or 4.5.x instead")
- endif()
- elseif(MINGW)
- message(FATAL_ERROR "CamiTK does not support ITK 3.x libraries for MinGW. You may file a feature request: https://bugzilla-timc.imag.fr/")
- else() #APPLE OR UNIX
- set(ITK_LIBRARIES ITKBasicFilters ITKCommon ITKIO ITKAlgorithms)
- endif()
-
- # ITK 4.3.x (mostly 4.3.2)
- elseif((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "4.4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- message(FATAL_ERROR "ITK version ${ITK_VERSION} is not compatible with Visual Studio 2008 or 2010. Please install ITK version 4.3.x or 4.5.x")
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- # Debug libraries
- debug ITKCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKNrrdIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONIFTI-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONRRD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDICT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDSED-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmIOD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg8-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg12-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg16-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmMSFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKgiftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5_cpp-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBioRad-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOStimulate-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTIFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBiasCorrection-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBioCell-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKFEM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBMP-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOCSV-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGDCM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGE-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOImageBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOJPEG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOLSM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMeta-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSiemens-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformInsightLegacy-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformMatlab-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOXML-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKKLMRegionGrowing-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKLabelMap-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkNetlibSlatec-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizers-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizersv4-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPath-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPolynomials-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKQuadEdgeMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKReview-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKStatistics-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoCore-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVNLInstantiation-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKWatersheds-4.3${CAMITK_DEBUG_POSTFIX}.lib
- # Release librariesdebug
- optimized ITKCommon-4.3.lib
- optimized ITKNrrdIO-4.3.lib
- optimized itkgdcmCommon-4.3.lib
- optimized itkjpeg-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized itkpng-4.3.lib
- optimized itktiff-4.3.lib
- optimized ITKSpatialObjects-4.3.lib
- optimized itkvnl_algo-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvnl-4.3.lib
- optimized itkvcl-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itksys-4.3.lib
- optimized ITKDICOMParser-4.3.lib
- optimized ITKEXPAT-4.3.lib
- optimized ITKniftiio-4.3.lib
- optimized ITKznz-4.3.lib
- optimized itkzlib-4.3.lib
- optimized snmpapi.lib
- optimized rpcrt4.lib
- optimized ws2_32.lib
- optimized comctl32.lib
- optimized wsock32.lib
- optimized opengl32.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIONIFTI-4.3.lib
- optimized ITKIONRRD-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized itkgdcmDICT-4.3.lib
- optimized itkgdcmDSED-4.3.lib
- optimized itkgdcmIOD-4.3.lib
- optimized itkgdcmjpeg8-4.3.lib
- optimized itkgdcmjpeg12-4.3.lib
- optimized itkgdcmjpeg16-4.3.lib
- optimized itkgdcmMSFF-4.3.lib
- optimized ITKgiftiio-4.3.lib
- optimized itkhdf5_cpp-4.3.lib
- optimized itkhdf5-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized ITKIOBioRad-4.3.lib
- optimized ITKIOStimulate-4.3.lib
- optimized ITKIOTIFF-4.3.lib
- optimized ITKIOVTK-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized ITKBiasCorrection-4.3.lib
- optimized ITKBioCell-4.3.lib
- optimized ITKFEM-4.3.lib
- optimized ITKIOBMP-4.3.lib
- optimized ITKIOCSV-4.3.lib
- optimized ITKIOGDCM-4.3.lib
- optimized ITKIOGE-4.3.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIOHDF5-4.3.lib
- optimized ITKIOImageBase-4.3.lib
- optimized ITKIOIPL-4.3.lib
- optimized ITKIOJPEG-4.3.lib
- optimized ITKIOLSM-4.3.lib
- optimized ITKIOMesh-4.3.lib
- optimized ITKIOMeta-4.3.lib
- optimized ITKIOSiemens-4.3.lib
- optimized ITKIOSpatialObjects-4.3.lib
- optimized ITKIOTransformBase-4.3.lib
- optimized ITKIOTransformHDF5-4.3.lib
- optimized ITKIOTransformInsightLegacy-4.3.lib
- optimized ITKIOTransformMatlab-4.3.lib
- optimized ITKIOXML-4.3.lib
- optimized ITKKLMRegionGrowing-4.3.lib
- optimized ITKLabelMap-4.3.lib
- optimized ITKMesh-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itkNetlibSlatec-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized ITKOptimizers-4.3.lib
- optimized ITKOptimizersv4-4.3.lib
- optimized ITKPath-4.3.lib
- optimized itkpng-4.3.lib
- optimized ITKPolynomials-4.3.lib
- optimized ITKQuadEdgeMesh-4.3.lib
- optimized ITKReview-4.3.lib
- optimized ITKStatistics-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvcl-4.3.lib
- optimized ITKVideoCore-4.3.lib
- optimized ITKVideoIO-4.3.lib
- optimized ITKVTK-4.3.lib
- optimized ITKVNLInstantiation-4.3.lib
- optimized ITKWatersheds-4.3.lib
- )
- endif()
- elseif(MINGW OR APPLE)
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- ITKCommon-4.3
- ITKNrrdIO-4.3
- itkgdcmCommon-4.3
- itkjpeg-4.3
- itkopenjpeg-4.3
- itkpng-4.3
- itktiff-4.3
- ITKSpatialObjects-4.3
- itkvnl_algo-4.3
- itkv3p_netlib-4.3
- itkvnl-4.3
- itkvcl-4.3
- itkv3p_lsqr-4.3
- ITKMetaIO-4.3
- itksys-4.3
- ITKDICOMParser-4.3
- ITKEXPAT-4.3
- ITKniftiio-4.3
- ITKznz-4.3
- itkzlib-4.3
- snmpapi
- rpcrt4
- ws2_32
- comctl32
- wsock32
- opengl32
- ITKIOGIPL-4.3
- ITKIONIFTI-4.3
- ITKIONRRD-4.3
- ITKIOPNG-4.3
- itkgdcmDICT-4.3
- itkgdcmDSED-4.3
- itkgdcmIOD-4.3
- itkgdcmjpeg8-4.3
- itkgdcmjpeg12-4.3
- itkgdcmjpeg16-4.3
- itkgdcmMSFF-4.3
- ITKgiftiio-4.3
- itkhdf5_cpp-4.3
- itkhdf5-4.3
- ITKMetaIO-4.3
- ITKIOBioRad-4.3
- ITKIOStimulate-4.3
- ITKIOTIFF-4.3
- ITKIOVTK-4.3
- ITKIOPNG-4.3
- ITKBiasCorrection-4.3
- ITKBioCell-4.3
- ITKFEM-4.3
- ITKIOBMP-4.3
- ITKIOCSV-4.3
- ITKIOGDCM-4.3
- ITKIOGE-4.3
- ITKIOGIPL-4.3
- ITKIOHDF5-4.3
- ITKIOImageBase-4.3
- ITKIOIPL-4.3
- ITKIOJPEG-4.3
- ITKIOLSM-4.3
- ITKIOMesh-4.3
- ITKIOMeta-4.3
- ITKIOSiemens-4.3
- ITKIOSpatialObjects-4.3
- ITKIOTransformBase-4.3
- ITKIOTransformHDF5-4.3
- ITKIOTransformInsightLegacy-4.3
- ITKIOTransformMatlab-4.3
- ITKIOXML-4.3
- ITKKLMRegionGrowing-4.3
- ITKLabelMap-4.3
- ITKMesh-4.3
- ITKMetaIO-4.3
- itkNetlibSlatec-4.3
- itkopenjpeg-4.3
- ITKOptimizers-4.3
- ITKOptimizersv4-4.3
- ITKPath-4.3
- itkpng-4.3
- ITKPolynomials-4.3
- ITKQuadEdgeMesh-4.3
- ITKReview-4.3
- ITKStatistics-4.3
- itkv3p_lsqr-4.3
- itkv3p_netlib-4.3
- itkvcl-4.3
- ITKVideoCore-4.3
- ITKVideoIO-4.3
- ITKVTK-4.3
- ITKVNLInstantiation-4.3
- ITKWatersheds-4.3
- )
- else() #Linux
- set(ITK_LIBRARIES ITKCommon-4.3)
- endif()
-
- # ITK 4.5.x (mostly 4.5.1)
- elseif((${ITK_VERSION} VERSION_GREATER "4.4") AND (${ITK_VERSION} VERSION_LESS "4.7"))
- if(MSVC)
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- message(FATAL_ERROR "ITK version ${ITK_VERSION} is not compatible with Visual Studio 2008 or 2010. Please install ITK version 3.20.1")
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- optimized TKIOBioRad-4.5.lib
- optimized ITKIOStimulate-4.5.lib
- optimized itkpng-4.5.lib
- debug ITKBiasCorrection-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBMP-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTIFF-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPolynomials-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKBiasCorrection-4.5.lib
- optimized ITKIOBMP-4.5.lib
- optimized ITKIOTIFF-4.5.lib
- optimized ITKPolynomials-4.5.lib
- debug ITKBioCell-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOCSV-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformBase-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKQuadEdgeMesh-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKBioCell-4.5.lib
- optimized ITKIOCSV-4.5.lib
- optimized ITKIOTransformBase-4.5.lib
- optimized ITKQuadEdgeMesh-4.5.lib
- debug ITKCommon-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGDCM-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformHDF5-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObjects-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKCommon-4.5.lib
- optimized ITKIOGDCM-4.5.lib
- optimized ITKIOTransformHDF5-4.5.lib
- optimized ITKSpatialObjects-4.5.lib
- debug ITKDICOMParser-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug debug ITKIOGE-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformInsightLegacy-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKStatistics-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKDICOMParser-4.5.lib
- optimized ITKIOGE-4.5.lib
- optimized ITKIOTransformInsightLegacy-4.5.lib
- optimized ITKStatistics-4.5.lib
- debug itkdouble-conversion-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGIPL-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformMatlab-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkdouble-conversion-4.5.lib
- optimized ITKIOGIPL-4.5.lib
- optimized ITKIOTransformMatlab-4.5.lib
- optimized itksys-4.5.lib
- debug ITKEXPAT-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOHDF5-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOVTK-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKEXPAT-4.5.lib
- optimized ITKIOHDF5-4.5.lib
- optimized ITKIOVTK-4.5.lib
- optimized itktiff-4.5.lib
- debug ITKFEM-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOImageBase-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOXML-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKFEM-4.5.lib
- optimized ITKIOImageBase-4.5.lib
- optimized ITKIOXML-4.5.lib
- optimized itkv3p_lsqr-4.5.lib
- debug itkgdcmCommon-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOIPL-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmCommon-4.5.lib
- optimized ITKIOIPL-4.5.lib
- optimized itkjpeg-4.5.lib
- optimized itkv3p_netlib-4.5.lib
- debug itkgdcmDICT-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOJPEG-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKKLMRegionGrowing-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmDICT-4.5.lib
- optimized ITKIOJPEG-4.5.lib
- optimized ITKKLMRegionGrowing-4.5.lib
- optimized itkvcl-4.5.lib
- debug itkgdcmDSED-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOLSM-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKLabelMap-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoCore-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmDSED-4.5.lib
- optimized ITKIOLSM-4.5.lib
- optimized ITKLabelMap-4.5.lib
- optimized ITKVideoCore-4.5.lib
- optimized itkgdcmIOD-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKIOMesh-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKMesh-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKVideoIO-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmIOD-4.5.lib
- optimized ITKIOMesh-4.5.lib
- optimized ITKMesh-4.5.lib
- optimized ITKVideoIO-4.5.lib
- debug itkgdcmjpeg12-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMeta-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg12-4.5.lib
- optimized ITKIOMeta-4.5.lib
- optimized ITKMetaIO-4.5.lib
- optimized itkvnl-4.5.lib
- debug itkgdcmjpeg16-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMRC-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkNetlibSlatec-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmjpeg16-4.5.lib
- optimized ITKIOMRC-4.5.lib
- optimized itkNetlibSlatec-4.5.lib
- optimized itkvnl_algo-4.5.lib
- debug itkgdcmjpeg8-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONIFTI-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVNLInstantiation-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmjpeg8-4.5.lib
- optimized ITKIONIFTI-4.5.lib
- optimized ITKniftiio-4.5.lib
- optimized ITKVNLInstantiation-4.5.lib
- debug itkgdcmMSFF-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONRRD-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKNrrdIO-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVTK-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkgdcmMSFF-4.5.lib
- optimized ITKIONRRD-4.5.lib
- optimized ITKNrrdIO-4.5.lib
- optimized ITKVTK-4.5.lib
- debug ITKgiftiio-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKWatersheds-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized ITKgiftiio-4.5.lib
- optimized ITKIOPNG-4.5.lib
- optimized itkopenjpeg-4.5.lib
- optimized ITKWatersheds-4.5.lib
- debug itkhdf5-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSiemens-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizers-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkhdf5-4.5.lib
- optimized ITKIOSiemens-4.5.lib
- optimized ITKOptimizers-4.5.lib
- optimized itkzlib-4.5.lib
- debug itkhdf5_cpp-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSpatialObjects-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPath-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz-4.5${CAMITK_DEBUG_POSTFIX}.lib
- optimized itkhdf5_cpp-4.5.lib
- optimized ITKIOSpatialObjects-4.5.lib
- optimized ITKPath-4.5.lib
- optimized ITKznz-4.5.lib
- debug ITKIOBioRad-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOStimulate-4.5${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.5${CAMITK_DEBUG_POSTFIX}.lib
- )
- endif() # MSVC
- elseif(MINGW)
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet for MinGW compiler. You may file a feature request: https://bugzilla-timc.imag.fr/")
- elseif(APPLE)
- set(ITK_LIBRARIES
- ITKBiasCorrection
- ITKBioCell
- ITKCommon
- ITKDICOMParser
- ITKEXPAT
- ITKFEM
- ITKGPUAnisotropicSmoothing
- ITKGPUCommon
- ITKGPUFiniteDifference
- ITKGPUImageFilterBase
- ITKGPUPDEDeformable
- ITKGPUSmoothing
- ITKGPUThresholding
- ITKIOBMP
- ITKIOBioRad
- ITKIOCSV
- ITKIOGDCM
- ITKIOGE
- ITKIOGIPL
- ITKIOHDF5
- ITKIOIPL
- ITKIOImageBase
- ITKIOJPEG
- ITKIOLSM
- ITKIOMesh
- ITKIOMeta
- ITKIONIFTI
- ITKIONRRD
- ITKIOPNG
- ITKIOSiemens
- ITKIOSpatialObjects
- ITKIOStimulate
- ITKIOTIFF
- ITKIOTransformBase
- ITKIOTransformHDF5
- ITKIOTransformInsightLegacy
- ITKIOTransformMatlab
- ITKIOVTK
- ITKIOXML
- ITKKLMRegionGrowing
- ITKLabelMap
- ITKMesh
- ITKMetaIO
- ITKNrrdIO
- ITKOptimizers
- ITKOptimizersv4
- ITKPath
- ITKPolynomials
- ITKQuadEdgeMesh
- ITKReview
- ITKSpatialObjects
- ITKStatistics
- ITKVNLInstantiation
- ITKVTK
- ITKVideoCore
- ITKVideoIO
- ITKWatersheds
- ITKgiftiio
- ITKniftiio
- ITKznz
- itkNetlibSlatec
- itkdouble-conversion
- itkhdf5
- itkhdf5_cpp
- itkjpeg
- itkopenjpeg
- itkpng
- itksys
- itktiff
- itkv3p_lsqr
- itkv3p_netlib
- itkvcl
- itkvnl
- itkvnl_algo
- itkzlib
- )
- else() #Linux
- # ITK_LIBRARIES is already set
- endif()
-
- # ITK version > 4.6 (mostly ITK 5.x)
- else()
- message(FATAL_ERROR "CamiTK does not support yet ITK version 5.x. You may file a feature request: https://bugzilla-timc.imag.fr/")
- endif()
- endif()
- endif() #NEEDS ITK
-
- # LIBXML2
- set(LIBXML2_LIBRARY "")
- if(${EXTENSION_NAME_CMAKE}_NEEDS_LIBXML2)
- # LibXml2 is required
- find_package(Xml2)
- if (LIBXML2_FOUND)
- add_definitions(${LIBXML2_DEFINITIONS})
- include_directories(${LIBXML2_INCLUDE_DIR})
- set(LIBXML2_LIBRARY ${LIBXML2_LIBRARIES})
- else()
- # most probably win32 or crosscompiling
- message(STATUS "${EXTENSION_NAME}: libxml2 required")
- endif()
- endif()
-
- # OPENCV
- set(OpenCV_LIBRARIES "")
- if(${EXTENSION_NAME_CMAKE}_NEEDS_OPENCV)
- # OpenCV is required
- find_package( OpenCV REQUIRED )
- else ( )
- set(OpenCV_LIBRARIES "")
- endif()
-
- # IGSTK
- set(IGSTK_LIBRARIES "")
- if(${EXTENSION_NAME_CMAKE}_NEEDS_IGSTK)
- find_package(IGSTK REQUIRED)
- include(${IGSTK_USE_FILE})
- else()
- set(IGSTK_LIBRARIES "")
- endif()
-
- # XERCES-C
- set(XERCESC_LIBRARIES)
- if(${EXTENSION_NAME_CMAKE}_NEEDS_XERCESC)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${EXTENSION_NAME}: xerces-c required. Please provide Xerces-C path.")
- endif()
- endif()
-
- # XSD
- if(${EXTENSION_NAME_CMAKE}_NEEDS_XSD)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- find_package(XSD REQUIRED)
- include_directories(${XSD_INCLUDE_DIR})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${EXTENSION_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
- endif()
- endif()
-
- # GDCM 2.2.x
- set(GDCM_LIBRARIES)
- if(${EXTENSION_NAME_CMAKE}_NEEDS_GDCM)
- if(NOT GDCM_FOUND)
- # Look for GDCM library only if not found (for instance, ITK has already search for it)
- # Calling find_package(GDCM ..) more than once creates CMake errors.
- find_package(GDCM 2.0 REQUIRED)
- endif()
- if(GDCM_FOUND)
- include(${GDCM_USE_FILE})
- if (MSVC)
- set(GDCM_LIBRARIES
- debug ${GDCM_DIR}/../gdcmcharls${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmCommon${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmDICT${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmDSED${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmexpat${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmgetopt${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmIOD${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmjpeg8${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmjpeg12${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmjpeg16${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmMEXD${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmMSFF${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmopenjpeg${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmzlib${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../socketxx${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../vtkgdcm${CAMITK_DEBUG_POSTFIX}
- debug ${GDCM_DIR}/../gdcmDSED${CAMITK_DEBUG_POSTFIX}
- optimized gdcmcharls gdcmCommon gdcmDICT gdcmDSED gdcmexpat
- optimized gdcmgetopt gdcmIOD gdcmjpeg8 gdcmjpeg12 gdcmjpeg16
- optimized gdcmMEXD gdcmMSFF gdcmopenjpeg gdcmzlib socketxx vtkgdcm
- optimized gdcmDSED
- )
- else()
- set(GDCM_LIBRARIES gdcmCommon gdcmDICT gdcmDSED gdcmMEXD gdcmMSFF vtkgdcm)
- endif()
- else()
- message(ERROR "${EXTENSION_NAME}: GDCM 2.x library required. Please install GDCM.")
- endif()
- endif()
-
- # ADDTIONAL QT MODULES
- set(QT_MODULES_LIBRARIES)
- if(${EXTENSION_NAME_CMAKE}_NEEDS_QT_MODULES)
- find_package(Qt4 "4.7" COMPONENTS QtCore QtGui QtXml QtXmlPatterns QtWebkit QtOpenGL QtScript QtSQL QtNetwork REQUIRED)
- if(NOT QT4_FOUND)
- message(SEND_ERROR "${EXTENSION_NAME} : Failed to find Qt 4.7 or greater. This is needed by CamiTK.")
- endif()
-
- # CMake will add the Qt modules specific include directories
- include(${QT_USE_FILE})
-
- # Qt additional modules are required for linking
- set(QT_MODULES_LIBRARIES ${QT_LIBRARIES})
- endif()
-
- # EXTERNAL LIBRARIES
- set(EXTERNAL_LIBRARIES)
- if(${EXTENSION_NAME_CMAKE}_EXTERNAL_LIBRARIES)
- foreach(EXTERNAL_LIBRARY ${${EXTENSION_NAME_CMAKE}_EXTERNAL_LIBRARIES})
- if (MSVC)
- set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES}
- debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}
- optimized ${EXTERNAL_LIBRARY}
- )
- else()
- set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
- endif()
- endforeach()
- endif()
-
- # BACKWARD COMPATIBILITY
- # NEEDS_TOOLS option
- # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
- if(${EXTENSION_NAME_CMAKE}_NEEDS_TOOL)
- message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_extension macro option NEEDS_TOOL is deprecated, please use NEEDS_CEP_LIBRARIES instead..")
- set(${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES ${${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES} ${${EXTENSION_NAME_CMAKE}_NEEDS_TOOL})
- endif()
-
-
-
- #########################################################################
- # #
- # LINK DIRECTORIES #
- # #
- # * Link directories are used to indicate the compiler where #
- # to look for folder containing libraries to link with. #
- # #
- #########################################################################
-
- # CAMITK BASIC LIB DIRECTORIES
- link_directories(${CAMITK_LINK_DIRECTORIES})
-
-
-
- #########################################################################
- # #
- # TARGET COMPILATION DEFINITION #
- # #
- # * Additional sources files to consider at compilation (.cpp) #
- # * CMake project target definition #
- # #
- #########################################################################
- # EXTERNAL SOURCES
- set(${EXTENSION_NAME_CMAKE}_SOURCES ${${EXTENSION_NAME_CMAKE}_SOURCES} ${${EXTENSION_NAME_CMAKE}_EXTERNAL_SOURCES})
-
- # CMAKE TARGET DEFINITION
- add_library(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} SHARED ${${EXTENSION_NAME_CMAKE}_SOURCES})
-
-
-
- #########################################################################
- # #
- # CAMITK ACTION / COMPONENT / LIBRARIES DEPENDENCIES #
- # #
- # * Look for action / component / libraries dependencies #
- # * Specific actions / components / libraries are specified as option #
- # with the NEEDS_ACTION/COMPONENT_EXTENSION/CEP_LIBRARIES syntax #
- # * Add dependencies to library-camitkcore and the testing #
- # action/component if test are runned on it #
- # #
- #########################################################################
-
- # 1st CAMITKCORE LIBRARY DEPENDENCY
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} ${CAMITK_CORE_TARGET_LIB_NAME})
-
- # 2nd COMPONENTS DEPENDENCIES
- if(${EXTENSION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION)
- set(COMPONENTS_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(COMPONENT_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
- # file dependency
- if (MSVC)
- set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES}
- debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/components/${COMPONENT_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${COMPONENT_NEEDED}
- )
- else()
- set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES} ${COMPONENT_NEEDED})
- endif()
- # CMake / CDash dependencies
- if(PACKAGING_NSIS)
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} component_${COMPONENT_NEEDED})
- else()
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} component-${COMPONENT_NEEDED})
- set(COMPONENTS_DEPENDENCY_LIST ${COMPONENTS_DEPENDENCY_LIST} component-${COMPONENT_NEEDED})
- endif()
- endforeach()
- endif()
-
- # 3rd ACTIONS DEPENDENCIES
- if(${EXTENSION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION)
- set(ACTIONS_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(ACTION_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/actions/${ACTION_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/actions/${ACTION_NEEDED})
- # file dependency
- if (MSVC)
- set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES}
- debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/${ACTION_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${ACTION_NEEDED}
- )
- else()
- set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES} ${ACTION_NEEDED})
- endif()
- # CMake / CDash dependencies
- if (PACKAGING_NSIS)
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} action_${ACTION_NEEDED})
- else()
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} action-${ACTION_NEEDED})
- set(ACTIONS_DEPENDENCY_LIST ${ACTIONS_DEPENDENCY_LIST} action-${ACTION_NEEDED})
- endif()
- endforeach()
- endif()
-
- # 4th CEP LIBRARIES DEPENDENCIES
- if(${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
- set(CEP_LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
- foreach(CEP_LIBRARY_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- # file dependency
- if (MSVC)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${CEP_LIBRARY_NEEDED}
- )
- else()
- if(PACKAGING_NSIS)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- else()
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- endif()
- endif()
- # CMake / CDash dependencies
- if (PACKAGING_NSIS)
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
- else()
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
- set(CEP_LIBRARIES_DEPENDENCY_LIST ${CEP_LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
- endif()
- endforeach()
- endif()
-
- # 5th DEPENDENCY ON TESTING APPLICATION
- # Those projects are used to run unitarian test on ACTION / COMPONENT extensions.
- set(APPLICATIONS_DEPENDENCY_LIST "")
- if(${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
- add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} application-test${TYPE_EXTENSION}s)
- set(APPLICATIONS_DEPENDENCY_LIST "application-test${TYPE_EXTENSION}s")
- # Add this dependencies for automatically constructing application-testactions components dependencies
- endif()
-
- if((CEP_NAME STREQUAL "SDK") OR (CEP_NAME STREQUAL "modeling") OR (CEP_NAME STREQUAL "imaging"))
- # 6th TEST-COMPONENT APPLICATION DEPENDENCY ON THIS COMPONENT
- if(${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
- add_dependencies(application-testactions ${COMPONENT_TARGET_NAME})
- endif()
-
- # 7th TEST-ACTION APPLICATION DEPENDENCY ON ACTION-APPLICATION
- if(${TYPE_EXTENSION_CMAKE}_TARGET_NAME STREQUAL "action-application")
- add_dependencies(application-testcomponents action-application)
- endif()
- endif()
-
-
- #########################################################################
- # #
- # COMPILATION FLAG #
- # #
- # * Flags are options to give to the compiler #
- # * Add user input flags #
- # * Add platform specific flags #
- # #
- #########################################################################
-
- # USER INPUT DEFINES COMPILER FLAG
- if(${EXTENSION_NAME_CMAKE}_DEFINES)
- foreach (FLAG ${${EXTENSION_NAME_CMAKE}_DEFINES})
- add_definitions(-D${FLAG})
- endforeach()
- endif()
-
- # USER INPUT CUSTOM COMPILER FLAG
- if(${EXTENSION_NAME_CMAKE}_CXX_FLAGS)
- foreach (FLAG ${${EXTENSION_NAME_CMAKE}_CXX_FLAGS})
- set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${FLAG}")
- endforeach()
- endif()
-
- # PLATFORM SPECIFIC COMPILER FLAG
- # 64bits and other platform with relocation needs -fPIC
- include(TestCXXAcceptsFlag)
- check_cxx_accepts_flag(-fPIC FPIC_FLAG_ACCEPTED)
- # no need to add -fPIC on mingw, otherwise it generates a warning: -fPIC ignored for target (all code is position independent) [enabled by default]
- # msvc is also accepting the flag, but then produce warning D9002 : ignoring unknown option '-fPIC' cl
- if(FPIC_FLAG_ACCEPTED AND NOT WIN32)
- set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY COMPILE_FLAGS -fPIC)
- endif()
-
-
-
- #########################################################################
- # #
- # LINKING #
- # #
- # * Linking is the last stage of compilation #
- # * Indicate what libraries to use for linking the target #
- # #
- #########################################################################
- # LINKING LIBRARIES
- # Any component or action has to be linked with ${CAMITK_CORE_LIBRARIES} and with all its dependencies
- target_link_libraries(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} ${CAMITK_CORE_LIBRARIES} ${CAMITK_LIBRARIES} ${COMPONENT_EXTENSION_LIBRARIES} ${ACTION_EXTENSION_LIBRARIES} ${CEP_LIBRARIES} ${QT_MODULES_LIBRARIES} ${ITK_LIBRARIES} ${LIBXML2_LIBRARY} ${OpenCV_LIBRARIES} ${IGSTK_LIBRARIES} ${XERCESC_LIBRARIES} ${GDCM_LIBRARIES} ${EXTERNAL_LIBRARIES})
-
-
-
- #########################################################################
- # #
- # OUTPUT #
- # #
- # * Define the output directory (location and name) #
- # * Define the output name of the library #
- # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
- # * Additional Linux .so files information #
- # #
- #########################################################################
-
- # OUTPUT LIBRARY NAME
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- PROPERTIES OUTPUT_NAME ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}
- )
-
- # OUTPUT DIRECTORY LOCATION AND NAME
- # Output directory (all extensions are private)
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- )
- # Output directory (for dll plateform, this is still the same, extensions are private)
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- )
- # Output directory (for dll plateform, this is still the same, extensions are private)
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
- )
-
- # OUTPUT LIBRARY NAME MSVC in DEBUG mode
- if (MSVC)
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
- endif()
-
- # ADDITIONAL LINUX .so FILE INFORMATION
- set(${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES ${${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES}
- VERSION "${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}"
- SOVERSION "${CAMITK_VERSION_MAJOR}"
- )
- # set the library specific info (SONAME...)
- set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES ${${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES} LINK_INTERFACE_LIBRARIES "")
-
- # see http://www.cmake.org/pipermail/cmake/2012-April/049889.html
- # target properties (outputname and remove soname)
- # set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTY NO_SONAME 1)
- # in CEP the version patch might not have been set
- if (NOT CAMITK_VERSION_PATCH)
- set(CAMITK_VERSION_PATCH 0)
- endif()
-
-
-
- #########################################################################
- # #
- # INSTALLATION #
- # #
- # * When installing the project, header files (.h) and test data are #
- # copied into a installation folder to determine. #
- # * Indicate in this section, where to install your project and which #
- # files to copy into that folder (during local/global installation) #
- # #
- #########################################################################
-
- # FOLDER INSTALLATION
- # Indicate where to install the action/component
- install(TARGETS ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- # TODO always use private lib, even for runtime
- RUNTIME DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
- LIBRARY DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
- ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
- COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- )
-
- # HEADERS INSTALLATION
- # Build target to install provided headers to install (with HEADERS_TO_INSTALL option)
- if(${EXTENSION_NAME_CMAKE}_HEADERS_TO_INSTALL)
- export_headers(${${EXTENSION_NAME_CMAKE}_HEADERS_TO_INSTALL} COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} GROUP ${TYPE_EXTENSION}s)
- endif()
-
- # Build target to install all header files(with INSTALL_ALL_HEADERS option)
- if(${EXTENSION_NAME_CMAKE}_INSTALL_ALL_HEADERS)
- export_headers(${${EXTENSION_NAME_CMAKE}_HEADERS} COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} GROUP ${TYPE_EXTENSION}s)
- endif()
-
- # TESTDATA INSTALLATION
- if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/testdata)
- # Check test data dir directory
- if (NOT EXISTS ${CAMITK_BUILD_TESTDATA_DIR})
- make_directory( ${CAMITK_BUILD_TESTDATA_DIR} )
- endif()
-
- # copy the files to test data directory
- execute_process(COMMAND ${CMAKE_COMMAND} -E copy_directory testdata ${CAMITK_BUILD_TESTDATA_DIR}
- WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
- )
-
- # during installation, copy the files to install directory
- set (TESTDATA_DEST_DIR share/${CAMITK_SHORT_VERSION_STRING}/testdata)
- install(DIRECTORY testdata/
- #DESTINATION share/testdata
- #DESTINATION share/${CAMITK_SHORT_VERSION_STRING}/testdata
- DESTINATION ${TESTDATA_DEST_DIR}
- # COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- PATTERN ".svn" EXCLUDE
- PATTERN "*~" EXCLUDE
- )
- endif()
-
- # CTESTDATA INSTALLATION
- if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/testdata/ctestdata)
- # Check test data dir directory
- if (NOT EXISTS ${CAMITK_BUILD_CTESTDATA_DIR})
- add_custom_command(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- POST_BUILD
- COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_BUILD_CTESTDATA_DIR}
- COMMENT "Creating build-time share directory for test data ${CAMITK_BUILD_CTESTDATA_DIR}"
- VERBATIM
- )
- endif()
-
- # At build time, copy the files to test data directory
- add_custom_command(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- POST_BUILD
- COMMAND ${CMAKE_COMMAND} -E copy_directory testdata/ctestdata ${CAMITK_BUILD_CTESTDATA_DIR}
- COMMENT "Installing build-time test data for ${EXTENSION_NAME}"
- WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
- VERBATIM
- )
-
- # during installation, copy the files to install directory
- set (CTESTDATA_DEST_DIR share/${CAMITK_SHORT_VERSION_STRING}/testdata/ctestdata)
- install(DIRECTORY testdata/ctestdata
- DESTINATION ${CTESTDATA_DEST_DIR}
- PATTERN ".svn" EXCLUDE
- PATTERN "*~" EXCLUDE
- )
- endif()
-
-
-
- #########################################################################
- # #
- # CDASH SUBPROJECT DESCRIPTION #
- # #
- # * Update the XML description of the subprojects dependencies #
- # for CDash. #
- # #
- #########################################################################
- # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
- camitk_sub_project_add(${TYPE_EXTENSION_CMAKE} ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} DEPENDENCIES library-camitkcore ${COMPONENTS_DEPENDENCY_LIST} ${ACTIONS_DEPENDENCY_LIST} ${CEP_LIBRARIES_DEPENDENCY_LIST} ${APPLICATIONS_DEPENDENCY_LIST})
-
-
-
- #########################################################################
- # #
- # PACKAGING CATEGORIZATION #
- # #
- # * On Windows, when building a package (win32 installer), the #
- # install shield wizard proposes you to select which component #
- # to install. #
- # * Each component to install has a short description following its #
- # name to understand its role. #
- # * This section deals with the categorization and the description #
- # of the component in this installer. #
- # #
- #########################################################################
-
- # WINDOWS INSTALLER CATEGORIZATION
- if(${EXTENSION_NAME_CMAKE}_CEP_NAME)
- if (${EXTENSION_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
- # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
- cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
- REQUIRED
- GROUP SDK
- )
-
- else()
- # Extension is selectable for installation in the wizard of the installer
- cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
- GROUP ${${EXTENSION_NAME_CMAKE}_CEP_NAME}
- )
- endif()
- else()
- # Extension if not categorized for packaging presentation
- cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
- DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
- )
- endif()
-
-
-
- #########################################################################
- # #
- # TRANSLATION #
- # #
- # * CAMITK_TRANSLATIONS contains the list of language to translate #
- # the QString to. #
- # #
- # * Create the translate.pro file which contains 4 sections: #
- # - HEADERS: list of .h/.hpp files to look for tr("") QString#
- # - SOURCES: list of .cpp files to look for tr("") QString #
- # - FORMS: list of .ui files to look for tr("") QString #
- # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
- # to define each .ts file #
- # #
- # * Execute lupdate program to update the .ts files with new QString #
- # found. #
- # #
- # * Execute lrelease program to create .qm files (binary equivalent of#
- # .ts files #
- # #
- # * Create translate.qrc which contains the list of .qm files. #
- # * Create the flags.qrc file which contains the list of .png flags #
- # images #
- # #
- #########################################################################
- if(${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
- if(${EXTENSION_NAME} STREQUAL "application")
- camitk_translate(USE_FLAGS
- EXTRA_LANGUAGE ${${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE}
- )
- else()
- camitk_translate(EXTRA_LANGUAGE ${${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
- endif()
- else()
- if(${EXTENSION_NAME} STREQUAL "application")
- camitk_translate(USE_FLAGS)
- else()
- camitk_translate()
- endif()
- endif()
-
-
-
- #########################################################################
- # #
- # CTEST - COMPONENT TESTS DESCRIPTION #
- # #
- #########################################################################
- if( ${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
- camitk_init_test( ${${EXTENSION_NAME_CMAKE}_TEST_APPLICATION} )
- set( CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|- style=\"background-color: #CCCCCC\" \\n || '''${TYPE_EXTENSION} ${EXTENSION_NAME}''' \\n" CACHE INTERNAL "")
-
- # Retrieve the current directory name to properly name the test
- get_directory_name( ${CMAKE_CURRENT_SOURCE_DIR} COMP_DIR_NAME )
-
- # Test should pass because application test runs with no arguments - shows usage and exit success
- camitk_add_test( TEST_SUFFIX ${COMP_DIR_NAME} PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- # Retrieve the files in testdata directory - a test will be applied for each of these files
- get_subdirectoryfiles( ${CMAKE_CURRENT_SOURCE_DIR}/testdata/ctestdata TESTFILES )
-
- # Different the test level to proceed
- set( LEVEL1 1 )
- set( LEVEL2 2 )
- set( LEVEL3 3 )
- set( TESTLEVEL ${LEVEL3} )
-
- # According options defined in Cmakelist enable or disable some tests
- set(TEST_DESCRIPTION "Test opening the component, saving it as a file and compare the saved file with the original one.")
- if( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL1 )
- set( TESTLEVEL 0 )
- set(TEST_DESCRIPTION "Run camitk-config.")
- elseif( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL2 )
- set( TESTLEVEL ${LEVEL1} )
- set(TEST_DESCRIPTION "Test opening the component.")
- elseif( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL3 )
- set( TESTLEVEL ${LEVEL2} )
- set(TEST_DESCRIPTION "Test opening the component and saving it as a file.")
- endif()
-
- set( LEVELORIGIN ${TESTLEVEL} )#store the test level value in a const variable
-
- foreach( COMPONENT_TESTDATA_FILE ${TESTFILES} )
- # Give the file name (full path cut)
- get_directory_name( ${COMPONENT_TESTDATA_FILE} DATA_FILE )
-
- # Test procedure: Open an extension and a component(level1) - save it(level2) - Compare saved file to original file(level3)
- if( ${TESTLEVEL} EQUAL ${LEVEL3} )
- if(MSVC)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll -l ${TESTLEVEL}" PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(APPLE)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib -l ${TESTLEVEL}" PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(UNIX)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so -l ${TESTLEVEL}" PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- endif()
- camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL ${TESTLEVEL} DESCRIPTION ${TEST_DESCRIPTION})
- MATH(EXPR TESTLEVEL "${TESTLEVEL}-1")#Decrease the test level to proceed less arduous tests
- endif()
- # Test procedure: Open an extension and a component(level1) - save it(level2)
- while( ${TESTLEVEL} GREATER 0)
- if(MSVC)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll -l ${TESTLEVEL}" TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(APPLE)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib -l ${TESTLEVEL}" TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(UNIX)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so -l ${TESTLEVEL}" TEST_SUFFIX ${COMP_DIR_NAME}_LEVEL${TESTLEVEL}_ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- endif()
- camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL ${TESTLEVEL} DESCRIPTION ${TEST_DESCRIPTION})
- MATH(EXPR TESTLEVEL "${TESTLEVEL}-1")#Decrease the test level to proceed less arduous tests
- endwhile()
- set( TESTLEVEL ${LEVELORIGIN} )
- endforeach()
-
- #########################################################################
- # #
- # CTEST - ACTION TESTS DESCRIPTION #
- # #
- #########################################################################
- elseif( ${EXTENSION_NAME_CMAKE}_ACTION_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
- camitk_init_test( ${${EXTENSION_NAME_CMAKE}_TEST_APPLICATION} )
- set( CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|- style=\"background-color: #CCCCCC\" \\n || '''${TYPE_EXTENSION} ${EXTENSION_NAME}''' \\n" CACHE INTERNAL "")
-
- # Retrieve the current directory name to properly name the test
- get_directory_name( ${CMAKE_CURRENT_SOURCE_DIR} COMP_DIR_NAME )
-
- # Test should pass because application test runs with no arguments - shows usage and exit success
- camitk_add_test( TEST_SUFFIX ${COMP_DIR_NAME} PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
-
- #get the names of actions .dlls in lib directory
- get_subdirectoryfiles( ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/ ACTIONSDLLS )
-
- foreach( ACTION_TESTDATA_FILE ${${EXTENSION_NAME_CMAKE}_TEST_FILES} )
- message( STATUS "Action extension: " ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME} " Test file: " ${ACTION_TESTDATA_FILE} )
-
- if( NOT ( ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME} MATCHES "application" ) )#We do not apply tests on actions like (close, save, save as)
- # Test procedure: Open a file - load an action extension - Apply an action on the component wrapping the file
- if(MSVC)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll" TEST_SUFFIX ${COMP_DIR_NAME} PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(APPLE)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib" TEST_SUFFIX ${COMP_DIR_NAME} PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- elseif(UNIX)
- camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so" TEST_SUFFIX ${COMP_DIR_NAME} PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
- endif()
- camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL 3 DESCRIPTION "Open a file, load the action and apply it on the component.")
- endif()
- endforeach()
- endif()
- endif() # endif(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE})
-
-endmacro()
-
-# Old macro to configure a new action to the framework
-# Use camitk_extension macro instead
-# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
-macro(action_extension)
- message(WARNING "Deprecated macro action_extension detected : please use camitk_extension(ACTION_EXTENSION ...) instead.")
- camitk_extension(ACTION_EXTENSION ${ARGN})
-endmacro()
-
-# Old macro to configure a new component to the framework
-# Use camitk_extension macro instead
-# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
-macro(component_extension)
- message(WARNING "Deprecated macro component_extension detected : please use camitk_extension(COMPONENT_EXTENSION ...) instead.")
- camitk_extension(COMPONENT_EXTENSION ${ARGN})
-endmacro()
-
-# TODO write a viewer_extension macro in CamiTK
diff --git a/sdk/cmake/modules/macros/CamiTKExtensionProject.cmake b/sdk/cmake/modules/macros/CamiTKExtensionProject.cmake
deleted file mode 100644
index 4d8d3d2..0000000
--- a/sdk/cmake/modules/macros/CamiTKExtensionProject.cmake
+++ /dev/null
@@ -1,141 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_extension_project creates an optional (disabled by default) CEP (CamiTK Extension Project)
-#! subdirectory the build.
-#!
-#! Usage:
-#! \code
-#! camitk_extension_project(CONTACT
-#! [ENABLED]
-#! [NAME cepName]
-#! [DESCRIPTION longDescription]
-#! [DEFAULT_APPLICATION exeName]
-#! [NEEDS_CEP cep1 cep2...]
-#! [LICENSE licenseName]
-#! )
-#! \endcode
-#!
-#! \param CONTACT Mandatory, this is the person(s) to contact to get more information about the CEP
-#! \param ENABLED If used, this CEP is forced by default (otherwise the user as to tick the option
-#! in CMake GUI or defined a -DCEP_<cepName>:BOOL=TRUE on the command line
-#! \param NAME By default the name of a CEP is given automatically by the name of the top level source directory
-#! If you specify a name here, the directory name will be ignored
-#! \param DESCRIPTION A (not so) small description of this CEP (objective, content, implementation information)
-#! \param DEFAULT_APPLICATION The default application to run (for MSVC launchers), default is camitk-imp
-#! \param NEEDS_CEP (TODO) Dependencies to other CEP
-#! \param LICENSE The name of the license for this CEP, default is LGPL-v3
-macro(camitk_extension_project)
-
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} CEP_DIR_NAME)
-
- parse_arguments(${CEP_DIR_NAME}_CMAKE
- "NEEDS_CEP;DEFAULT_APPLICATION;DESCRIPTION;CONTACT;NAME;LICENSE" # possible lists
- "ENABLED" # possible options
- ${ARGN}
- )
-
- # get the proper name
- if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_NAME)
- set(CEP_NAME ${CEP_DIR_NAME})
- else()
- set(CEP_NAME ${${CEP_DIR_NAME}_CMAKE_NAME})
- endif()
- string(TOUPPER ${CEP_NAME} CEP_NAME_CMAKE)
-
- # if it is the first cmake run, create the internal variable with a correct initial value (false is default)
- if(NOT CEP_${CEP_NAME_CMAKE}_INTERNAL)
- # add option to enable/disable this CEP
- if(${CEP_DIR_NAME}_CMAKE_ENABLED)
- set(CEP_${CEP_NAME_CMAKE}_ENABLED TRUE)
- else()
- set(CEP_${CEP_NAME_CMAKE}_ENABLED FALSE)
- endif()
- set(CEP_${CEP_NAME_CMAKE} ${CEP_${CEP_NAME_CMAKE}_ENABLED} CACHE BOOL "Build CEP ${CEP_NAME}")
- set(CEP_${CEP_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable CAMITK_CEP_${CEP_NAME_CMAKE} already created?")
- endif()
-
- if(CEP_${CEP_NAME_CMAKE})
- message(STATUS "Building CEP ${CEP_NAME}")
-
- project(${CEP_NAME})
-
- if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_CONTACT)
- message(FATAL_ERROR "In camitk_extension_project(...) for CEP \"${CEP_NAME}\": CONTACT argument is mandatory\n Should give the email address of the person(s) to contact for more information about the CEP \"${CEP_NAME}\"")
- endif()
-
- if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_LICENSE)
- set(${CEP_NAME}_LICENSE "LGPL-v3")
- else()
- set(${CEP_NAME}_LICENSE ${${CEP_DIR_NAME}_CMAKE_LICENSE})
- endif()
-
- # update module path
- set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR})
-
- # init cep sub project
- camitk_sub_project_init()
-
- # packaging macro must be called before parsing extensions CMakeList files.
- camitk_cep_packaging(NAME ${CEP_NAME}
- CONTACT ${${CEP_DIR_NAME}_CMAKE_CONTACT}
- DESCRIPTION ${${CEP_DIR_NAME}_CMAKE_DESCRIPTION}
- LICENSE ${${CEP_NAME}_LICENSE}
- )
-
- # add all subprojects
- camitk_add_subdirectory(libraries)
- camitk_add_subdirectory(components)
- camitk_add_subdirectory(actions)
- camitk_add_subdirectory(viewers)
- camitk_add_subdirectory(applications)
-
- # CEP packaging (only works if this is a stand-alone CEP
- camitk_sub_project_validate()
-
- # For Microsoft Visual C++, sets the default application for the "ALL_BUILD" project
- # (i.e. launches imp when we you click on "Debug" or "Start Without Debugging" button on Visual)
- # In addition, but not the least, sets the environment to the debug dll directory for VTK (and ITK)
- # to solve the dll incompatibility between debug and relase version of QVTK.dll and ITKCommon.dll
- # is there a specifi application to run by default
- if(${CEP_NAME_CMAKE}_CMAKE_DEFAULT_APPLICATION)
- set(CEP_DEFAULT_APPLICATION ${${CEP_NAME_CMAKE}_CMAKE_DEFAULT_APPLICATION})
- else()
- set(CEP_DEFAULT_APPLICATION "camitk-imp")
- endif()
-
- # if this is a single CEP, provides the installation facilities
- # otherwise, just add include(CamiTKInstall) to get the installation facilities
- if (NOT CAMITK_EXTENSION_PROJECT_SET)
- #-- camitk_global_install == install in CAMITK_DIR
- if (CAMITK_SDK_BUILD)
- # if the SDK is currently being build => install in CMAKE_INSTALL_PREFIX
- add_custom_target(${CEP_NAME}_global_install
- # Second cmake to install
- COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
- COMMENT "Global Installation in ${CMAKE_INSTALL_PREFIX}"
- )
-
- else()
- # this is called from a normal CEP build => install in CAMITK_DIR
- add_custom_target(${CEP_NAME}_global_install
- # First cmake to redefine install prefix
- COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX:PATH=${CAMITK_DIR} ${CMAKE_BINARY_DIR}
- # Second cmake to install
- COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
- COMMENT "Global Installation in ${CAMITK_DIR}"
- )
- endif()
-
- # camitk_local_install == install in User Config directory
- add_custom_target(${CEP_NAME}_local_install
- # First cmake to redefine install prefix
- COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX:PATH=${CAMITK_USER_DIR} ${CMAKE_BINARY_DIR}
- COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
- COMMENT "Local Installation in ${CAMITK_USER_DIR}"
- )
- endif()
-
-
- endif()
-endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/CamiTKInitTest.cmake b/sdk/cmake/modules/macros/CamiTKInitTest.cmake
deleted file mode 100644
index 248a82e..0000000
--- a/sdk/cmake/modules/macros/CamiTKInitTest.cmake
+++ /dev/null
@@ -1,77 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! camitk_init_test is a macro to initialize a group of test (for the same command)
-#! It is used to initialize a series of tests for a given target.
-#! Usually this is placed in the same CMakeLists.txt as the add_executable() cmake instruction or
-#! camitk_application() macro
-#!
-#! It does few useful things:
-#! - check if the application is properly defined
-#! - initialize test id (then automatically incremented in camitk_test_declare
-#! - initialize test output directory
-#!
-#! Usage:
-#! \code
-#! camitk_init_test(applicationname)
-#! \endcode
-#!
-#! \param applicationname (required) The name of the test application (in camitk context, name of the project
-#!
-#! Example invocation:
-#!
-#! \code
-#!
-#! camitk_application()
-#!
-#! ...
-#! # Start the test series for myprogram
-#! camitk_init_test(myprogram)
-#! camitk_add_test(...) # will be called myprogram1
-#! ...
-#! camitk_add_test(...) # myprogram2
-#!
-#! \endcode
-#
-#! @sa camitk_add_test
-macro(camitk_init_test)
- parse_arguments(CAMITK_INIT_TEST
- "" # possible lists
- ""
- ${ARGN}
- )
-
- set(CAMITK_TEST_ID "0")
- set(CAMITK_TEST_LIST "")
-
- # check for executable
- if(NOT CAMITK_INIT_TEST_DEFAULT_ARGS)
- message(FATAL_ERROR "Initializing test ${CAMITK_TEST_BASENAME} cannot proceed: please specify the target in brackets")
- else()
- if(NOT TARGET ${CAMITK_INIT_TEST_DEFAULT_ARGS})
- message(FATAL_ERROR "Initializing test ${CAMITK_TEST_BASENAME} cannot proceed: ${CAMITK_INIT_TEST_DEFAULT_ARGS} is not a proper target")
- endif()
-
- # get the application real name using the target properties
- get_target_property( APP_NAME ${CAMITK_INIT_TEST_DEFAULT_ARGS} OUTPUT_NAME )
-
- # add debug postfix if needed by MSVC
- set( APP_SUFFIX "" )
- if(MSVC)
- get_target_property( APP_SUFFIX ${CAMITK_INIT_TEST_DEFAULT_ARGS} DEBUG_POSTFIX )
- endif()
- endif()
-
- # if there is an error, it might be that the macro is used with a non-camitk application, just use the default parameter as application name
- if (APP_NAME STREQUAL "APP_NAME-NOTFOUND")
- set(APP_NAME ${CAMITK_INIT_TEST_DEFAULT_ARGS})
- # CAMITK_INIT_TEST_EXECUTABLE is not the application name but the full path to it
- set(CAMITK_INIT_TEST_EXECUTABLE ${CMAKE_CURRENT_BINARY_DIR}/${APP_NAME}${APP_SUFFIX} )
- else()
- # CAMITK_INIT_TEST_EXECUTABLE is not the application name but the full path to the binary to be executed
- set(CAMITK_INIT_TEST_EXECUTABLE ${CAMITK_BUILD_BIN_DIR}/${APP_NAME}${APP_SUFFIX} )
- endif()
-
- set(CAMITK_TEST_BASENAME ${CAMITK_INIT_TEST_DEFAULT_ARGS})
- # message(STATUS "Initializing test series for ${CAMITK_TEST_BASENAME}")
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKLibrary.cmake b/sdk/cmake/modules/macros/CamiTKLibrary.cmake
deleted file mode 100644
index a88b8dd..0000000
--- a/sdk/cmake/modules/macros/CamiTKLibrary.cmake
+++ /dev/null
@@ -1,1024 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_library simplifies the declaration of a library inside CamiTK
-#! and is to be used for all inner project libraries
-#!
-#! The name of the CEP library is deduced from the name of the directory, unless LIBNAME is provided
-#!
-#! If the library is compiled as shared, it adds the needed library properties
-#! If it needs relocation flag fPIC (on some plateforms), this macro should determine
-#! if this is the case and specify this flag
-#!
-#! usage:
-#! \code
-#! camitk_library(
-#! SHARED|STATIC
-#! [LIBNAME libname]
-#! [PUBLIC]
-#! SOURCES source1.cpp source1.h...
-#! [NEEDS_CEP_LIBRARIES lib1 lib2...]
-#! [NEEDS_ITK]
-#! [NEEDS_LIBXML2]
-#! [NEEDS_XERCESC]
-#! [NEEDS_XSD]
-#! [NEEDS_QT_MODULES]
-#! [DEFINES flag1 flag2 ...]
-#! [EXTERNAL_LIBRARIES lib1 lib2... ]
-#! [INCLUDE_DIRECTORIES dir1 dir2...]
-#! [LINK_DIRECTORIES dir1 dir2...]
-#! [HEADERS_TO_INSTALL]
-#! [CEP_NAME]
-#! [DESCRIPTION]
-#! [EXTRA_TRANSLATE_LANGUAGE]
-#!
-#! )
-#! \endcode
-#!
-#! \param SHARED optional, if the library should be compiled as shared
-#! \param SOURCES all sources to be included in the library
-#! \param INCLUDE_DIRECTORIES all needed include directories (${CMAKE_CURRENT_SOURCE_DIR} and ${CMAKE_CURRENT_BINARY_DIR} are automatically added)
-#! \param EXTERNAL_LIBRARIES all the libraries to be used during the link (shared or static)
-#! \param NEEDS_CEP_LIBRARIES all the libraries to be used during the link (shared or static)
-#! \param NEEDS_ITK add this if your component needs ITK.
-#! \param NEEDS_LIBXML2 add this if the CEP library needs libxml2
-#! \param NEEDS_XERCESC add this if your action / component needs XercesC library
-#! \param NEEDS_XSD add this if your action needs Codesynthesis xsd cxx (xml schema compiler)
-#! \param NEEDS_QT_MODULES add this if your library depends on Qt modules, such as QtCore, QtGui, QtMultimedia, QtNetwork, QtOpenGL, QtScript, QtScriptTools, QtSql, QtSvg, QtWebkit, QtXml, QtXmlPatterns, QtDeclarative
-#! \param LIBNAME force the CEP library name to be different from the directory it is in
-#! \param LINK_DIRECTORIES additional directories to use in link_directories(...)
-#! \param DEFINES list of define flags to add at compilation time
-#! \param PUBLIC The library is a public library that has to be loaded directly by the operating system.
-#! It is generally only needed for SDK library. A public library should not be installed in the
-#! lib/${CAMITK_SHORT_VERSION_STRING} but directly in lib/ (on Unix/MacOS) or bin/ (on windows)
-#! \param HEADERS_TO_INSTALL list of header files to install. File would be copied at build and installation time
-#! in the ./include/libraries/library-name subdirectory.
-#! Note that, if no header files are provided, all header files (*.h) will be install.
-#! \param CEP_NAME specify the CEP_NAME, which is used to categorized the extension for packaging purpose
-#! No CEP_NAME provided will result in default categorization (generic extension).
-#! \param DESCRIPTION Simple description of the extension. Used for packaging presentation for instance.
-#! \param EXTRA_TRANSLATE_LANGUAGE Additionnal extra language to translate the application
-
-macro(camitk_library)
-
- #########################################################################
- # #
- # ARGUMENTS PARSING #
- # #
- # * Use a macro to create the CMAKE variables according to the #
- # provided options as input. #
- # #
- #########################################################################
-
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} DEFAULT_LIBRARY_NAME)
-
- parse_arguments(${DEFAULT_LIBRARY_NAME_CMAKE}
- "SOURCES;NEEDS_CEP_LIBRARIES;EXTERNAL_LIBRARIES;INCLUDE_DIRECTORIES;LIBNAME;DEFINES;LINK_DIRECTORIES;HEADERS_TO_INSTALL;CEP_NAME;DESCRIPTION;EXTRA_TRANSLATE_LANGUAGE" # possible lists
- "SHARED;STATIC;NEEDS_ITK;NEEDS_LIBXML2;NEEDS_XERCESC;NEEDS_XSD;NEEDS_QT_MODULES;PUBLIC" # possible options
- ${ARGN}
- )
-
-
-
- #########################################################################
- # #
- # CREATE CMAKE VARIABLES #
- # #
- # * Create required and useful CMake variables for the macro #
- # #
- #########################################################################
-
- # TARGET NAME
- # The target name is composed of the following: library-name
- # * library is the suffix
- # * name is deduced from the input folder containing the calling CMakeLists.txt file of the extension.
- # "-" is replaced by "_" if configuring for packaging with NSIS, the program to create a Windows installer.
- if (PACKAGING_NSIS)
- if ("${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME}" STREQUAL "")
- set(LIBRARY_TARGET_NAME library_${DEFAULT_LIBRARY_NAME})
- else()
- set(LIBRARY_TARGET_NAME library_${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME})
- endif()
- else()
- if ("${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME}" STREQUAL "")
- set(LIBRARY_TARGET_NAME library-${DEFAULT_LIBRARY_NAME})
- else()
- set(LIBRARY_TARGET_NAME library-${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME})
- endif()
- endif()
-
-
-
- #########################################################################
- # #
- # INCLUDE DIRECTORIES #
- # #
- # * Include library directories where to look for header files #
- # * Include also additional user provided directories #
- # * These directories are used for compilation step #
- # #
- #########################################################################
-
- # BASIC DIRECTORIES
- include_directories(${CAMITK_INCLUDE_DIRECTORIES})
- include_directories(${CMAKE_CURRENT_SOURCE_DIR})
- include_directories(${CMAKE_CURRENT_BINARY_DIR})
-
- # USER PROVIDED ADDITIONAL DIRECTORIEs
- include_directories(${${DEFAULT_LIBRARY_NAME_CMAKE}_INCLUDE_DIRECTORIES})
-
-
-
- #########################################################################
- # #
- # ADDITIONAL KNOWN LIBRARY DEPENDENCIES #
- # #
- # * Look for specific library needed #
- # * Specific libraries are specified as option with the #
- # NEEDS_LIBRARY syntax (see macro syntax for more options) #
- # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
- # #
- #########################################################################
-
- # Looking for ITK
- set(ITK_LIBRARIES "")
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_ITK)
- find_package(ITK REQUIRED)
- if(ITK_FOUND)
- include(${ITK_USE_FILE})
- set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
- message(STATUS "${${DEFAULT_LIBRARY_NAME_CMAKE}_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
-
- # Now select the ITK libraries according to the ITK version found.
- # ITK 3.x.x (mostly 3.20.1)
- if ((${ITK_VERSION} VERSION_GREATER "3") AND (${ITK_VERSION} VERSION_LESS "4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- set(ITK_LIBRARIES
- debug ITKAlgorithms${CAMITK_DEBUG_POSTFIX}
- optimized ITKAlgorithms
- debug ITKBasicFilters${CAMITK_DEBUG_POSTFIX}
- optimized ITKBasicFilters
- debug ITKCommon${CAMITK_DEBUG_POSTFIX}
- optimized ITKCommon
- debug ITKIO${CAMITK_DEBUG_POSTFIX}
- optimized ITKIO
- debug ITKNrrdIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcm${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg12${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg16${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg8${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObject${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_inst${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- )
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- message(FATAL_ERROR "It seems you have ITK version 3.x installed. This one is not compatible with Visual Studio 2012 or 2013. Please install ITK 4.3.x or 4.5.x instead")
- endif()
- elseif(MINGW)
- message(FATAL_ERROR "CamiTK does not support ITK 3.x libraries for MinGW. You may file a feature request: https://bugzilla-timc.imag.fr/")
- else() #APPLE OR UNIX
- set(ITK_LIBRARIES ITKBasicFilters ITKCommon ITKIO ITKAlgorithms)
- endif()
-
- # ITK 4.3.x (mostly 4.3.2)
- elseif((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "4.4"))
- if (MSVC) # Visual Studio compilers
- if(MSVC90 OR MSVC10) #ITK 3.x only works with VS 2008 / 2010
- message(FATAL_ERROR "ITK version ${ITK_VERSION} is not compatible with Visual Studio 2008 or 2010. Please install ITK version 4.3.x or 4.5.x")
- elseif(MSVC11 OR MSVC12) # Visual Studion 2012/2013
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- # Debug libraries
- debug ITKCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKNrrdIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmCommon-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itktiff-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl_algo-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvnl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itksys-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKDICOMParser-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKEXPAT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKniftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKznz-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkzlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug snmpapi.lib
- debug rpcrt4.lib
- debug ws2_32.lib
- debug comctl32.lib
- debug wsock32.lib
- debug opengl32.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONIFTI-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIONRRD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDICT-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmDSED-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmIOD-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg8-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg12-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmjpeg16-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkgdcmMSFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKgiftiio-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5_cpp-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkhdf5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBioRad-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOStimulate-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTIFF-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOPNG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBiasCorrection-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKBioCell-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKFEM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOBMP-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOCSV-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGDCM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGE-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOGIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOImageBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOIPL-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOJPEG-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOLSM-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOMeta-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSiemens-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOSpatialObjects-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformBase-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformHDF5-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformInsightLegacy-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOTransformMatlab-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKIOXML-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKKLMRegionGrowing-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKLabelMap-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKMetaIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkNetlibSlatec-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkopenjpeg-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizers-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKOptimizersv4-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPath-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkpng-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKPolynomials-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKQuadEdgeMesh-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKReview-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKStatistics-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_lsqr-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkv3p_netlib-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug itkvcl-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoCore-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVideoIO-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVTK-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKVNLInstantiation-4.3${CAMITK_DEBUG_POSTFIX}.lib
- debug ITKWatersheds-4.3${CAMITK_DEBUG_POSTFIX}.lib
- # Release librariesdebug
- optimized ITKCommon-4.3.lib
- optimized ITKNrrdIO-4.3.lib
- optimized itkgdcmCommon-4.3.lib
- optimized itkjpeg-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized itkpng-4.3.lib
- optimized itktiff-4.3.lib
- optimized ITKSpatialObjects-4.3.lib
- optimized itkvnl_algo-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvnl-4.3.lib
- optimized itkvcl-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itksys-4.3.lib
- optimized ITKDICOMParser-4.3.lib
- optimized ITKEXPAT-4.3.lib
- optimized ITKniftiio-4.3.lib
- optimized ITKznz-4.3.lib
- optimized itkzlib-4.3.lib
- optimized snmpapi.lib
- optimized rpcrt4.lib
- optimized ws2_32.lib
- optimized comctl32.lib
- optimized wsock32.lib
- optimized opengl32.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIONIFTI-4.3.lib
- optimized ITKIONRRD-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized itkgdcmDICT-4.3.lib
- optimized itkgdcmDSED-4.3.lib
- optimized itkgdcmIOD-4.3.lib
- optimized itkgdcmjpeg8-4.3.lib
- optimized itkgdcmjpeg12-4.3.lib
- optimized itkgdcmjpeg16-4.3.lib
- optimized itkgdcmMSFF-4.3.lib
- optimized ITKgiftiio-4.3.lib
- optimized itkhdf5_cpp-4.3.lib
- optimized itkhdf5-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized ITKIOBioRad-4.3.lib
- optimized ITKIOStimulate-4.3.lib
- optimized ITKIOTIFF-4.3.lib
- optimized ITKIOVTK-4.3.lib
- optimized ITKIOPNG-4.3.lib
- optimized ITKBiasCorrection-4.3.lib
- optimized ITKBioCell-4.3.lib
- optimized ITKFEM-4.3.lib
- optimized ITKIOBMP-4.3.lib
- optimized ITKIOCSV-4.3.lib
- optimized ITKIOGDCM-4.3.lib
- optimized ITKIOGE-4.3.lib
- optimized ITKIOGIPL-4.3.lib
- optimized ITKIOHDF5-4.3.lib
- optimized ITKIOImageBase-4.3.lib
- optimized ITKIOIPL-4.3.lib
- optimized ITKIOJPEG-4.3.lib
- optimized ITKIOLSM-4.3.lib
- optimized ITKIOMesh-4.3.lib
- optimized ITKIOMeta-4.3.lib
- optimized ITKIOSiemens-4.3.lib
- optimized ITKIOSpatialObjects-4.3.lib
- optimized ITKIOTransformBase-4.3.lib
- optimized ITKIOTransformHDF5-4.3.lib
- optimized ITKIOTransformInsightLegacy-4.3.lib
- optimized ITKIOTransformMatlab-4.3.lib
- optimized ITKIOXML-4.3.lib
- optimized ITKKLMRegionGrowing-4.3.lib
- optimized ITKLabelMap-4.3.lib
- optimized ITKMesh-4.3.lib
- optimized ITKMetaIO-4.3.lib
- optimized itkNetlibSlatec-4.3.lib
- optimized itkopenjpeg-4.3.lib
- optimized ITKOptimizers-4.3.lib
- optimized ITKOptimizersv4-4.3.lib
- optimized ITKPath-4.3.lib
- optimized itkpng-4.3.lib
- optimized ITKPolynomials-4.3.lib
- optimized ITKQuadEdgeMesh-4.3.lib
- optimized ITKReview-4.3.lib
- optimized ITKStatistics-4.3.lib
- optimized itkv3p_lsqr-4.3.lib
- optimized itkv3p_netlib-4.3.lib
- optimized itkvcl-4.3.lib
- optimized ITKVideoCore-4.3.lib
- optimized ITKVideoIO-4.3.lib
- optimized ITKVTK-4.3.lib
- optimized ITKVNLInstantiation-4.3.lib
- optimized ITKWatersheds-4.3.lib
- )
- endif()
- elseif(MINGW OR APPLE)
- link_directories(${ITK_DIR}/../..)
- set(ITK_LIBRARIES
- ITKCommon-4.3
- ITKNrrdIO-4.3
- itkgdcmCommon-4.3
- itkjpeg-4.3
- itkopenjpeg-4.3
- itkpng-4.3
- itktiff-4.3
- ITKSpatialObjects-4.3
- itkvnl_algo-4.3
- itkv3p_netlib-4.3
- itkvnl-4.3
- itkvcl-4.3
- itkv3p_lsqr-4.3
- ITKMetaIO-4.3
- itksys-4.3
- ITKDICOMParser-4.3
- ITKEXPAT-4.3
- ITKniftiio-4.3
- ITKznz-4.3
- itkzlib-4.3
- snmpapi
- rpcrt4
- ws2_32
- comctl32
- wsock32
- opengl32
- ITKIOGIPL-4.3
- ITKIONIFTI-4.3
- ITKIONRRD-4.3
- ITKIOPNG-4.3
- itkgdcmDICT-4.3
- itkgdcmDSED-4.3
- itkgdcmIOD-4.3
- itkgdcmjpeg8-4.3
- itkgdcmjpeg12-4.3
- itkgdcmjpeg16-4.3
- itkgdcmMSFF-4.3
- ITKgiftiio-4.3
- itkhdf5_cpp-4.3
- itkhdf5-4.3
- ITKMetaIO-4.3
- ITKIOBioRad-4.3
- ITKIOStimulate-4.3
- ITKIOTIFF-4.3
- ITKIOVTK-4.3
- ITKIOPNG-4.3
- ITKBiasCorrection-4.3
- ITKBioCell-4.3
- ITKFEM-4.3
- ITKIOBMP-4.3
- ITKIOCSV-4.3
- ITKIOGDCM-4.3
- ITKIOGE-4.3
- ITKIOGIPL-4.3
- ITKIOHDF5-4.3
- ITKIOImageBase-4.3
- ITKIOIPL-4.3
- ITKIOJPEG-4.3
- ITKIOLSM-4.3
- ITKIOMesh-4.3
- ITKIOMeta-4.3
- ITKIOSiemens-4.3
- ITKIOSpatialObjects-4.3
- ITKIOTransformBase-4.3
- ITKIOTransformHDF5-4.3
- ITKIOTransformInsightLegacy-4.3
- ITKIOTransformMatlab-4.3
- ITKIOXML-4.3
- ITKKLMRegionGrowing-4.3
- ITKLabelMap-4.3
- ITKMesh-4.3
- ITKMetaIO-4.3
- itkNetlibSlatec-4.3
- itkopenjpeg-4.3
- ITKOptimizers-4.3
- ITKOptimizersv4-4.3
- ITKPath-4.3
- itkpng-4.3
- ITKPolynomials-4.3
- ITKQuadEdgeMesh-4.3
- ITKReview-4.3
- ITKStatistics-4.3
- itkv3p_lsqr-4.3
- itkv3p_netlib-4.3
- itkvcl-4.3
- ITKVideoCore-4.3
- ITKVideoIO-4.3
- ITKVTK-4.3
- ITKVNLInstantiation-4.3
- ITKWatersheds-4.3
- )
- else() #Linux
- set(ITK_LIBRARIES ITKCommon-4.3)
- endif()
-
- # ITK 4.5.x (mostly 4.5.1)
- elseif((${ITK_VERSION} VERSION_GREATER "4.4") AND (${ITK_VERSION} VERSION_LESS "4.7"))
- if(MSVC)
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet on Visual Studio compiler. You may file a feature request: https://bugzilla-timc.imag.fr/")
- elseif(MINGW)
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet for MinGW compiler. You may file a feature request: https://bugzilla-timc.imag.fr/")
- elseif(APPLE)
- set(ITK_LIBRARIES
- ITKBiasCorrection
- ITKBioCell
- ITKCommon
- ITKDICOMParser
- ITKEXPAT
- ITKFEM
- ITKGPUAnisotropicSmoothing
- ITKGPUCommon
- ITKGPUFiniteDifference
- ITKGPUImageFilterBase
- ITKGPUPDEDeformable
- ITKGPUSmoothing
- ITKGPUThresholding
- ITKIOBMP
- ITKIOBioRad
- ITKIOCSV
- ITKIOGDCM
- ITKIOGE
- ITKIOGIPL
- ITKIOHDF5
- ITKIOIPL
- ITKIOImageBase
- ITKIOJPEG
- ITKIOLSM
- ITKIOMesh
- ITKIOMeta
- ITKIONIFTI
- ITKIONRRD
- ITKIOPNG
- ITKIOSiemens
- ITKIOSpatialObjects
- ITKIOStimulate
- ITKIOTIFF
- ITKIOTransformBase
- ITKIOTransformHDF5
- ITKIOTransformInsightLegacy
- ITKIOTransformMatlab
- ITKIOVTK
- ITKIOXML
- ITKKLMRegionGrowing
- ITKLabelMap
- ITKMesh
- ITKMetaIO
- ITKNrrdIO
- ITKOptimizers
- ITKOptimizersv4
- ITKPath
- ITKPolynomials
- ITKQuadEdgeMesh
- ITKReview
- ITKSpatialObjects
- ITKStatistics
- ITKVNLInstantiation
- ITKVTK
- ITKVideoCore
- ITKVideoIO
- ITKWatersheds
- ITKgiftiio
- ITKniftiio
- ITKznz
- itkNetlibSlatec
- itkdouble-conversion
- itkhdf5
- itkhdf5_cpp
- itkjpeg
- itkopenjpeg
- itkpng
- itksys
- itktiff
- itkv3p_lsqr
- itkv3p_netlib
- itkvcl
- itkvnl
- itkvnl_algo
- itkzlib
- )
- else() #Linux
- message(FATAL_ERROR "ITK version 4.5.x is not supported yet for Linux platform. You may file a feature request: https://bugzilla-timc.imag.fr/")
- endif()
-
- # ITK version > 4.6 (mostly ITK 5.x)
- else()
- message(FATAL_ERROR "CamiTK does not support yet ITK version 5.x. You may file a feature request: https://bugzilla-timc.imag.fr/")
- endif()
- endif()
- endif() #NEEDS ITK
-
- # LIBXML2
- set(LIBXML2_LIBRARY "")
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_LIBXML2)
- # LibXml2 is required
- find_package(Xml2)
- if (LIBXML2_FOUND)
- add_definitions(${LIBXML2_DEFINITIONS})
- include_directories(${LIBXML2_INCLUDE_DIR})
- set(LIBXML2_LIBRARY ${LIBXML2_LIBRARIES})
- else()
- # most probably win32 or crosscompiling
- message(WARNING "${LIBRARY_TARGET_NAME}: libxml2 required")
- endif()
- endif()
-
- # XERCES-C
- set(XERCESC_LIBRARIES)
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_XERCESC)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${DEFAULT_LIBRARY_NAME}: xerces-c required. Please provide Xerces-C path.")
- endif()
- endif()
-
- # XSD
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_XSD)
- # XercesC is required
- find_package(XercesC REQUIRED)
- if (XERCESC_FOUND)
- include_directories(${XERCESC_INCLUDE_DIR})
- set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
- find_package(XSD REQUIRED)
- include_directories(${XSD_INCLUDE_DIR})
- else()
- # most probably win32 or crosscompiling
- message(FATAL_ERROR "${LIBRARY_TARGET_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
- endif()
- endif()
-
- # ADDITIONAL QT MODULES
- set(QT_MODULES_LIBRARIES)
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_QT_MODULES)
- find_package(Qt4 "4.7" COMPONENTS QtCore QtGui QtXml QtXmlPatterns QtWebkit QtOpenGL QtScript QtSQL QtNetwork REQUIRED)
- if(NOT QT4_FOUND)
- message(SEND_ERROR "${DEFAULT_LIBRARY_NAME} : Failed to find Qt 4.7 or greater. This is needed by CamiTK.")
- endif()
-
- # CMake will add the Qt modules specific include directories
- include(${QT_USE_FILE})
-
- # Qt additional modules are required for linking
- set(QT_MODULES_LIBRARIES ${QT_LIBRARIES})
- endif()
-
- # EXTERNAL DEPENDENCIES
- set(LINKER_EXTERNAL_LIBRARIES)
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_EXTERNAL_LIBRARIES)
- foreach(EXTERNAL_LIBRARY ${${DEFAULT_LIBRARY_NAME_CMAKE}_EXTERNAL_LIBRARIES})
- if (MSVC)
- set(LINKER_EXTERNAL_LIBRARIES ${LINKER_EXTERNAL_LIBRARIES}
- debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}
- optimized ${EXTERNAL_LIBRARY}
- )
- message(STATUS "LINKER_EXTERNAL_LIBRARIES = ${LINKER_EXTERNAL_LIBRARIES}")
- else()
- set(LINKER_EXTERNAL_LIBRARIES ${LINKER_EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
- endif()
- endforeach()
- endif()
-
-
-
- #########################################################################
- # #
- # LINK DIRECTORIES #
- # #
- # * Link directories are used to indicate the compiler where #
- # to look for folder containing libraries to link with. #
- # * Additional link directories provided by the user #
- # #
- #########################################################################
- # CAMITK BASIC LIB DIRECTORIES
- link_directories(${CAMITK_LINK_DIRECTORIES})
-
- # ADDITIONAL LINK DIRECTORIES
- if (NOT "${${DEFAULT_LIBRARY_NAME_CMAKE}_LINK_DIRECTORIES}" STREQUAL "")
- link_directories(${${DEFAULT_LIBRARY_NAME_CMAKE}_LINK_DIRECTORIES})
- endif()
-
-
-
- #########################################################################
- # #
- # TARGET COMPILATION DEFINITION #
- # #
- # * Additional sources files to consider at compilation (.cpp) #
- # * CMake project target definition depending on library type #
- # public / private #
- # #
- #########################################################################
- # CMAKE TARGET DEFINITION DEPENDENDING ON THE LIBRARY TYPE (SHARED or STATIC)
- if (${DEFAULT_LIBRARY_NAME_CMAKE}_SHARED) # shared library
- message(STATUS "Adding shared library: ${LIBRARY_TARGET_NAME}")
- add_library(${LIBRARY_TARGET_NAME} SHARED ${${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES})
- # prepare the library specific info (SONAME...)
- set(${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES ${${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES}
- VERSION "${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}"
- SOVERSION "${CAMITK_VERSION_MAJOR}"
- )
- # set the library specific info (SONAME...)
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ${${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES} LINK_INTERFACE_LIBRARIES "")
- elseif (${DEFAULT_LIBRARY_NAME_CMAKE}_STATIC) # static library
- message(STATUS "Adding static library: ${LIBRARY_TARGET_NAME}")
- add_library(${LIBRARY_TARGET_NAME} STATIC ${${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES})
- else()
- message(FATAL_ERROR "In adding static library ${LIBRARY_TARGET_NAME}.\n Please specify the library type: SHARED or STATIC")
- endif()
-
-
-
- #########################################################################
- # #
- # CAMITK LIBRARIES DEPENDENCIES #
- # #
- # * Add in this section library dependencies to other camitk libraies #
- # to keep a correct build order (NEEDS_CEP_LIBRARIES). #
- # #
- #########################################################################
-
- # CEP LIBRARIES DEPENDENCIES
- set(CEP_LIBRARIES)
- set(LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
- foreach(CEP_LIBRARY_NEEDED ${${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
- # include directories from build, camitk (local or global install).
- include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
- # file dependency
- if (MSVC)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}
- optimized ${CEP_LIBRARY_NEEDED}
- )
- else()
- if(PACKAGING_NSIS)
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- else()
- set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
- endif()
- endif()
- # CMake / CDash dependencies
- if(PACKAGING_NSIS)
- add_dependencies(${LIBRARY_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
- else()
- add_dependencies(${LIBRARY_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
- set(LIBRARIES_DEPENDENCY_LIST ${LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
- endif()
- endforeach()
- endif()
-
-
-
- #########################################################################
- # #
- # LINKING #
- # #
- # * Linking is the last stage of compilation #
- # * Indicate what libraries to use for linking the target #
- # #
- #########################################################################
- # LINKING LIBRARIES
- target_link_libraries(${LIBRARY_TARGET_NAME} ${CEP_LIBRARIES} ${LINKER_EXTERNAL_LIBRARIES} ${LIBXML2_LIBRARY} ${ITK_LIBRARIES} ${QT_MODULES_LIBRARIES} ${XERCESC_LIBRARIES})
-
-
-
- #########################################################################
- # #
- # OUTPUT #
- # #
- # * Define the output directory (location and name) #
- # * Define the output name of the library #
- # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
- # #
- #########################################################################
-
- # OUTPUT DIRECTORY LOCATION and NAME depending on the type of the library (PUBLIC or PRIVATE)
- # DEBGUG POSTFIX FOR MSVC
- if (${DEFAULT_LIBRARY_NAME_CMAKE}_PUBLIC) # Public library => build in the bin folder
- if (MSVC)
- # With Visual Studio, public libraries are built in build\bin directory, else it's in build\lib
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
- LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
- LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
- RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
- RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
- else()
- # for xcode generation, the <CONFIG> postfix should also be used, but "a la" UNIX (lib in /lib etc...)
- # no need to check the generator with if(CMAKE_GENERATOR STREQUAL Xcode), as the <CONFIG> postfix should
- # not affect the other unix generators
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
- )
- endif()
- else() # Private library => build in lib folder
- if (MSVC)
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
- endif()
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- )
- set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
- )
- endif()
-
- # OUTUPUT LIBRARY NAME (without the prefix "library-").
- string(REGEX REPLACE "^library_|^library-" "" LIBRARY_NAME ${LIBRARY_TARGET_NAME})
- set_target_properties(${LIBRARY_TARGET_NAME}
- PROPERTIES OUTPUT_NAME ${LIBRARY_NAME}
- )
-
-
-
- #########################################################################
- # #
- # COMPILATION FLAG #
- # #
- # * Flags are options to give to the compiler #
- # * Add user input flags #
- # * Add platform specific flags #
- # #
- #########################################################################
-
- # USER INPUT COMPILER FLAG
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_DEFINES)
- foreach (FLAG ${${DEFAULT_LIBRARY_NAME_CMAKE}_DEFINES})
- add_definitions(-D${FLAG})
- endforeach()
- endif()
-
- # PLATFORM SPECIFIC COMPILER FLAG
- # 64bits and other platform with relocation needs -fPIC
- include(TestCXXAcceptsFlag)
- check_cxx_accepts_flag(-fPIC FPIC_FLAG_ACCEPTED)
- # no need to add -fPIC on mingw, otherwise it generates a warning: -fPIC ignored for target (all code is position independent) [enabled by default]
- # msvc is also accepting the flag, but then produce warning D9002 : ignoring unknown option '-fPIC' cl
- if(FPIC_FLAG_ACCEPTED AND NOT WIN32)
- set_property(TARGET ${LIBRARY_TARGET_NAME} APPEND PROPERTY COMPILE_FLAGS -fPIC)
- endif()
-
-
-
- #########################################################################
- # #
- # INSTALLATION #
- # #
- # * When installing the project, header files (.h) and test data are #
- # copied into an installation folder to determine. #
- # * Indicate in this section, where to install your project and which #
- # files to copy into that folder (during local/global installation) #
- # #
- #########################################################################
-
- # FOLDER INSTALLATION
- # Indicate where to install the library, dependending on its property (public / private)
- if (${DEFAULT_LIBRARY_NAME_CMAKE}_PUBLIC) # public library
- if(WIN32)
- # public library -> install in bin folder
- install(TARGETS ${LIBRARY_TARGET_NAME}
- RUNTIME DESTINATION bin
- LIBRARY DESTINATION lib
- ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- COMPONENT ${LIBRARY_NAME_INSTALL}
- )
- else()
- # other public libraries -> install in lib folder
- install(TARGETS ${LIBRARY_TARGET_NAME}
- RUNTIME DESTINATION lib
- LIBRARY DESTINATION lib
- ARCHIVE DESTINATION lib
- COMPONENT ${LIBRARY_NAME_INSTALL}
- )
- endif()
- else()
- # private library -> install in lib/camitk-version folder
- install(TARGETS ${LIBRARY_TARGET_NAME}
- RUNTIME DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- LIBRARY DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
- COMPONENT ${LIBRARY_NAME_INSTALL}
- )
- endif()
-
- # HEADER FILES (.h) INSTALLATION
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS_TO_INSTALL)
- # If headers information provided for installation => install them
- export_headers(${${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS_TO_INSTALL} COMPONENT ${LIBRARY_TARGET_NAME} GROUP libraries)
- else()
- # if not, install all headers (*.h) by default in the build/include/libraries/library-name directory
- file(GLOB_RECURSE ${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS ${CMAKE_CURRENT_SOURCE_DIR}/*.h)
- export_headers(${${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS} COMPONENT ${LIBRARY_TARGET_NAME} GROUP libraries)
- endif()
-
-
-
- #########################################################################
- # #
- # CDASH SUBPROJECT DESCRIPTION #
- # #
- # * Update the XML descriton of the subprojects dependencies #
- # for CDash. #
- # #
- #########################################################################
- # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
- if(LIBRARY_TARGET_NAME STREQUAL "library-qtpropertybrowser")
- # library-qtpropertybrowser is a corelib as library-camitkcore depends on it
- camitk_sub_project_add(CORELIB ${LIBRARY_TARGET_NAME} DEPENDENCIES ${LIBRARIES_DEPENDENCY_LIST})
- else()
- camitk_sub_project_add(CEP_LIBRARY ${LIBRARY_TARGET_NAME} DEPENDENCIES ${LIBRARIES_DEPENDENCY_LIST})
- endif()
-
-
-
- #########################################################################
- # #
- # TRANSLATION #
- # #
- # * CAMITK_TRANSLATIONS contains the list of language to translate #
- # the QString to. #
- # #
- # * Create the translate.pro file which contains 4 sections: #
- # - HEADERS: list of .h/.hpp files to look for tr("") QString#
- # - SOURCES: list of .cpp files to look for tr("") QString #
- # - FORMS: list of .ui files to look for tr("") QString #
- # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
- # to define each .ts file #
- # #
- # * Execute lupdate program to update the .ts files with new QString #
- # found. #
- # #
- # * Execute lrelease program to create .qm files (binary equivalent of#
- # .ts files #
- # #
- # * Create translate.qrc which contains the list of .qm files. #
- # * Create the flags.qrc file which contains the list of .png flags #
- # images #
- # #
- #########################################################################
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
- camitk_translate(EXTRA_LANGUAGE ${${DEFAULT_LIBRARY_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
- else()
- camitk_translate()
- endif()
-
-
-
- #########################################################################
- # #
- # PACKAGING CATEGORIZATION #
- # #
- # * On Windows, when building a package (win32 installer), the #
- # install shield wizard proposes you to select which component #
- # to install. #
- # * Each component to install has a short description following its #
- # name to understand its role. #
- # * This section deals with the categorization and the description #
- # of the component in this installer. #
- # #
- #########################################################################
-
- # WINDOWS INSTALLER CATEGORIZATION
- if(${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME) # This input variable describes the category
- if (${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
- # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
- cpack_add_component(${LIBRARY_TARGET_NAME}
- DISPLAY_NAME ${LIBRARY_TARGET_NAME}
- DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
- REQUIRED
- GROUP SDK
- )
-
- else()
- # Extension is selectable for installation in the wizard of the installer
- cpack_add_component(${LIBRARY_TARGET_NAME}
- DISPLAY_NAME ${LIBRARY_TARGET_NAME}
- DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
- GROUP ${${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME}
- )
- endif()
- else()
- # Extension if not categorized for packaging presentation
- cpack_add_component(${LIBRARY_TARGET_NAME}
- DISPLAY_NAME ${LIBRARY_TARGET_NAME}
- DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
- )
-
- endif()
-
-endmacro()
-
-# Old macro to configure a tool
-# Use camitk_library macro instead
-# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
-macro(camitk_tool)
- message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_tool macro is deprecated, please usecamitk_library(...) instead (use the same parameters).")
-# string(REPLACE "NEEDS_TOOL" "NEEDS_CEP_LIBRARIES" OBSOLETE_ARGN ${ARGN})
-# message(STATUS "**************************************** ${ARGN} ===>>> ${OBSOLETE_ARGN} ")
- camitk_library(${OBSOLETE_ARGN})
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKOpenSourcePackaging.cmake b/sdk/cmake/modules/macros/CamiTKOpenSourcePackaging.cmake
deleted file mode 100644
index 33dcc14..0000000
--- a/sdk/cmake/modules/macros/CamiTKOpenSourcePackaging.cmake
+++ /dev/null
@@ -1,503 +0,0 @@
-#------------------
-# CamiTK packaging
-#------------------
-
-# To make an installer,
-# - configure cmake with -DPACKAGING_NSIS:BOOL=TRUE (on windows AND unix)
-# - use the custom target camitk_package, e.g "make camitk_package"
-#
-# On Windows platforms
-# CMake configure command (from the build directory) :
-# cmake -DPACKAGING_NSIS=TRUE -DCEP_IMAGING=TRUE -DCEP_MODELING=TRUE -DAPPLICATION_CEPGENERATOR=FALSE -DAPPLICATION_TESTACTIONS=FALSE -DAPPLICATION_TESTCOMPONENTS=FALSE -DAPPLICATION_WIZARD=FALSE ../src
-# Launch the camitkopensource.sln visual studio solution file.
-# Build all in Release (do it again if some .h files missing errors occured)
-# Build camitk_package target.
-
-# On UNIX platforms
-# cmake -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DCEP_IMAGING:BOOL=TRUE -DCEP_MODELING:BOOL=TRUE -DPACKAGING_NSIS:BOOL=TRUE -DCMAKE_INSTALL_PREFIX=/usr
-#
-# On debian/ubuntu, you need to have package "dpkg" (to build DEB packages) and package "rpm" (to build RPM packages) installed:
-# apt-get install dpkg rpm
-#
-# To make a source tar ball, just use the custom target camitk_package_sourc
-# - make camitk_package_source
-# (it generates the correct CamiTKVersion.h)
-#
-# To check the content of a deb package:
-# dpkg --contents package.deb
-# To install the content of a deb in a subdirectory instead of system-wide:
-# dpkg --vextract package.deb subdirectory
-#
-# On windows for the NSIS packager, to generate different components that can be opt out at install time, see
-# http://www.itk.org/Wiki/CMake:Component_Install_With_CPack
-#
-# More generally see http://www.itk.org/Wiki/CMake:CPackConfiguration
-
-# There is a bug deb package (cmake 2.8.9 on Debian Wheezy): permission for directories are not rights
-# Here is how to fix it (inspired from https://github.com/paralect/robomongo/blob/master/install/linux/fixup_deb.sh.in )
-# set PACKAGE_FILENAME="camitk-3.3.0-debian-7.x-wheezy_amd64.deb"
-# cd /tmp
-# mkdir camitk-deb
-# dpkg-deb -x $PACKAGE_FILENAME camitk-deb
-# dpkg-deb --control $PACKAGE_FILENAME camitk-deb/DEBIAN
-# rm $PACKAGE_FILENAME
-# find camitk-deb -type d -print0 |xargs -0 chmod 755
-# find camitk-deb -name "*.1" -print0 |xargs -0 chmod 0644
-# find fix_up_deb/usr/bin -name "camitk-*" -print0 |xargs -0 chmod 0755
-# fakeroot dpkg -b camitk-deb $PACKAGE_FILENAME
-# rm -rf camitk-deb
-
-
-macro(camitk_opensource_packaging)
-
-# package name
-string(TOLOWER ${CAMITK_PROJECT_NAME} CPACK_PACKAGE_NAME)
-set(CPACK_PACKAGE_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})
-set(CPACK_PACKAGE_VERSION_MINOR ${CAMITK_VERSION_MINOR})
-set(CPACK_PACKAGE_VERSION_PATCH ${CAMITK_VERSION_PATCH})
-set(CPACK_PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
-string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}-${CAMITK_VER_NICKNAME}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
-
-# contact information
-set(CPACK_PACKAGE_VENDOR "UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525")
-set(CPACK_PACKAGE_CONTACT "http://camitk.imag.fr")
-set(CPACK_DEBIAN_PACKAGE_MAINTAINER "CamiTK Developers <camitk-team at imag.fr>")
-
-# resource files
-set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
-set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
-
-# executable
-set(CPACK_PACKAGE_EXECUTABLES "camitk-imp" "camitk-imp" "camitk-actionstatemachine" "camitk-actionstatemachine")
-
-# CamiTK package description
-set(CPACK_PACKAGE_DESCRIPTION "CamiTK stands for Computer Assisted Medical Intervention Tool Kit and aims at providing an easy way to protype medical applications")
-set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "CamiTK stands for Computer Assisted Medical Intervention Tool Kit and aims at providing an easy way to protype medical applications. CamiTK functionnalities are extendable thanks to plugins. This package includes the IMP application with main plugins that allow users to interact with medical images (2D, 3D), process them and simulate biomechanichal deformations. It also includes the actionstatemachine application that allows user to easily run a pip [...]
-
-# Files to ignore during generation of the package
-set(CPACK_SOURCE_IGNORE_FILES
-"~$"
-"/CVS/"
-"tags"
-"/\\\\.svn/"
-"/\\\\.git/"
-"/kdev4$/"
-"/build/"
-"\\\\.kdevses$"
-"\\\\.kdev4$"
-"\\\\.tmp$"
-"\\\\.tmp.save$"
-"\\\\.kdevelop\\\\.pcs$"
-".DS_Store"
-${CPACK_SOURCE_IGNORE_FILES}
-)
-
-set(CPACK_SOURCE_GENERATOR "TGZ" "ZIP" )
-
-# Detect processor bits range (32bits / 64bits)
-# not the whole architecture (ARM ...).
-if(CMAKE_SIZEOF_VOID_P EQUAL 8)
- set(WIN64 TRUE)
-else()
- set(WIN64 FALSE)
-endif()
-
-
-# ----------------------------------
-# Unix packages (Ubuntu and Debian)
-# ----------------------------------
-if (PACKAGING_NSIS AND UNIX AND NOT WIN32)
-
- # Note : even if not packaging for Unix with NSIS, the CMake variable
- # PACKAGING_NSIS is used here to indicate we are packaging (i.e. building
- # the camitk_package target).
-
- message(STATUS "Packaging CamiTK for UNIX systems")
- # Try to find architecture
- execute_process(COMMAND uname -m OUTPUT_VARIABLE CPACK_PACKAGE_ARCHITECTURE)
- string(STRIP "${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_ARCHITECTURE)
- # Try to find distro name and distro-specific arch
- execute_process(COMMAND lsb_release -is OUTPUT_VARIABLE LSB_ID)
- execute_process(COMMAND lsb_release -rs OUTPUT_VARIABLE LSB_RELEASE)
- string(STRIP "${LSB_ID}" LSB_ID)
- string(STRIP "${LSB_RELEASE}" LSB_RELEASE)
- set(LSB_DISTRIB "${LSB_ID}${LSB_RELEASE}")
- if(NOT LSB_DISTRIB)
- set(LSB_DISTRIB "unix")
- endif(NOT LSB_DISTRIB)
- message(STATUS "Packager architecture : ${LSB_DISTRIB}")
-
- # debian section
- set(CPACK_DEBIAN_PACKAGE_SECTION "science")
-
- #Find DPKG
- find_program(DPKG
- NAMES dpkg-deb
- PATHS "/usr/bin" #Add paths here
- )
- if ( DPKG )
- get_filename_component(DPKG_PATH ${DPKG} ABSOLUTE)
- message(STATUS "Packaging deb using ${DPKG_PATH}: OK")
- set(DPKG_FOUND "YES")
- else()
- set(DPKG_FOUND "NO")
- endif()
-
- # Packaging requires ITK
- find_package(ITK REQUIRED)
- include(${ITK_USE_FILE})
-
- # set the package generator
- set(CPACK_GENERATOR "DEB" "RPM")
-
- # For Debian-based distribs we want to create DEB packages.
- if ("${LSB_DISTRIB}" MATCHES "Ubuntu|Debian")
-
- # We need to alter the architecture names as per distro rules
- if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "i[3-6]86")
- set(CPACK_PACKAGE_ARCHITECTURE i386)
- endif()
- if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "x86_64")
- set(CPACK_PACKAGE_ARCHITECTURE amd64)
- endif()
- # Set the dependencies based on the distrib version
-
- # Installation path
- # Set the install location to "/usr"
- # PLEASE, set the CamiTK install root path in your CMake command line / GUI (and not directly here)
- set(CPACK_SET_DESTDIR TRUE)
- set(CPACK_PACKAGING_INSTALL_PREFIX "/usr")
- set(CPACK_PACKAGE_DEFAULT_LOCATION "/usr")
-
-
- # Dependencies depending on the Operating System.
- # Ubuntu12.xx
- # WARNING Beware to the syntax of the Debian package dependencies, else it won't manage to install.
- if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04"
- OR "${LSB_DISTRIB}" MATCHES "Ubuntu12.04.1"
- OR "${LSB_DISTRIB}" MATCHES "Ubuntu12.10"
- OR "${LSB_DISTRIB}" MATCHES "Ubuntu13.04"
- OR "${LSB_DISTRIB}" MATCHES "Ubuntu13.10"
- )
- # All these ubuntu version dependencies are the same, only one package is needed for all
- set(LSB_DISTRIB "Ubuntu12.04to13.10")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "cmake, libvtk5-dev (>= 5.8), libqt4-dev, libvtk5-qt4-dev (>= 5.8), xsdcxx, libinsighttoolkit3-dev (>= 3.20), libxerces-c-dev, libxml2-dev, libgdcm2-dev, libfftw3-dev, libqtwebkit-dev | libqt4-dev (<< 4.7), libvtkgdcm2-dev,doxygen, graphviz")
- endif()
-
- # Debian dependencies
- if ("${LSB_DISTRIB}" MATCHES "Debian7.*") # Debian Wheezy
- set(LSB_DISTRIB "Debian-7.x-Wheezy")
- set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev (>= 4:4.8), libqtwebkit4 (>= 2), libqtwebkit-dev (>= 2), libvtk5.8 (>= 5.8.0), libvtk5-dev (>= 5.8.0), libvtk5.8-qt4 (>= 5.8.0), libvtk5-qt4-dev (>= 5.8.0), libinsighttoolkit3-dev (>= 3.20.1), vtk-doc (>= 5.8.0), tcl-vtk (>= 5.8.0), libinsighttoolkit3.20 (>= 3.20.1), libtiff4-dev (>= 3.9), libopenjpeg-dev (>= 1.3), libxml2 (>= 2.7.8), libxml2-dev (>= 2.7.8), xsdcxx (>= 3.3.0), libxerces-c-dev (>= 3.1.1), libgdcm2.2 (>= 2), libgdcm2 [...]
- endif()
-
- if(NOT CPACK_DEBIAN_PACKAGE_DEPENDS)
- message(STATUS "Packaging for ${LSB_DISTRIB} not supported yet.\n")
- endif()
-
- endif()
-
- # package name
- string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
-
-endif()
-
-
-# -----------------------
-# Packaging for Windows
-# -----------------------
-if(WIN32 AND MSVC AND PACKAGING_NSIS)
-
- # NSIS must be installed on the computer
- find_program(MAKENSIS makensis.exe)
- if(MAKENSIS)
- message(STATUS "NSIS Packaging using ${MAKENSIS}")
- else()
- message(FATAL_ERROR "NSIS executable (makensis.exe) is not installed or not in the system path. Please fix this problem for packaging.")
- endif()
-
- # Update package name for windows release
- if(WIN64) #64 bits installer
- set(CPACK_PACKAGE_ARCHITECTURE amd64)
- else() #32 bits installer
- set(CPACK_PACKAGE_ARCHITECTURE i386)
- endif()
- string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${CAMITK_VER_NICKNAME}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
-
- message(STATUS "Packaging CamiTK for Windows: ${CPACK_PACKAGE_FILE_NAME}")
-
- if(WIN64) # 64bits installer
- # Qt libraries
- set(QT_PACKAGE_LIRABRIES
- C:/dev/Qt/4.8.5/bin/QtCore4.dll
- C:/dev/Qt/4.8.5/bin/QtGui4.dll
- C:/dev/Qt/4.8.5/bin/QtSvg4.dll
- C:/dev/Qt/4.8.5/bin/QtXml4.dll
- C:/dev/Qt/4.8.5/bin/QtNetwork4.dll
- C:/dev/Qt/4.8.5/bin/QtSql4.dll
- C:/dev/Qt/4.8.5/bin/QtWebKit4.dll
- )
-
- # VTK libraries
- set(VTK_PACKAGE_LIBRARIES
- C:/dev/VTK/5.10.1/bin/QVTK.dll
- C:/dev/VTK/5.10.1/bin/vtkCommon.dll
- C:/dev/VTK/5.10.1/bin/vtksys.dll
- C:/dev/VTK/5.10.1/bin/vtkFiltering.dll
- C:/dev/VTK/5.10.1/bin/vtkGraphics.dll
- C:/dev/VTK/5.10.1/bin/vtkHybrid.dll
- C:/dev/VTK/5.10.1/bin/vtkIO.dll
- C:/dev/VTK/5.10.1/bin/vtkImaging.dll
- C:/dev/VTK/5.10.1/bin/vtkRendering.dll
- C:/dev/VTK/5.10.1/bin/vtkVolumeRendering.dll
- C:/dev/VTK/5.10.1/bin/vtkverdict.dll
- C:/dev/VTK/5.10.1/bin/vtkDICOMParser.dll
- C:/dev/VTK/5.10.1/bin/vtkNetCDF.dll
- C:/dev/VTK/5.10.1/bin/vtkNetCDF_cxx.dll
- C:/dev/VTK/5.10.1/bin/vtkexpat.dll
- C:/dev/VTK/5.10.1/bin/vtkjpeg.dll
- C:/dev/VTK/5.10.1/bin/vtkmetaio.dll
- C:/dev/VTK/5.10.1/bin/vtkpng.dll
- C:/dev/VTK/5.10.1/bin/vtktiff.dll
- C:/dev/VTK/5.10.1/bin/vtkzlib.dll
- C:/dev/VTK/5.10.1/bin/vtkInfovis.dll
- C:/dev/VTK/5.10.1/bin/vtkfreetype.dll
- C:/dev/VTK/5.10.1/bin/vtkftgl.dll
- C:/dev/VTK/5.10.1/bin/vtkalglib.dll
- C:/dev/VTK/5.10.1/bin/vtklibxml2.dll
- C:/dev/VTK/5.10.1/bin/vtkViews.dll
- C:/dev/VTK/5.10.1/bin/vtkexoIIc.dll
- C:/dev/VTK/5.10.1/bin/vtkWidgets.dll
- C:/dev/VTK/5.10.1/bin/vtkhdf5.dll
- C:/dev/VTK/5.10.1/bin/vtkhdf5_hl.dll
- C:/dev/VTK/5.10.1/bin/LSDyna.dll
- )
-
- #ITK library
- set(ITK_PACKAGE_LIBRARIES
- C:/dev/ITK/4.3.2/bin/ITKCommon-4.3.dll
- )
-
- # GDCM libraries
- set(GDCM_PACKAGE_LIBRARIES
- C:/dev/gdcm/2.5/bin/vtkgdcm.dll
- C:/dev/gdcm/2.5/bin/gdcmcommon.dll
- C:/dev/gdcm/2.5/bin/gdcmcharls.dll
- C:/dev/gdcm/2.5/bin/gdcmdict.dll
- C:/dev/gdcm/2.5/bin/gdcmdsed.dll
- C:/dev/gdcm/2.5/bin/gdcmexpat.dll
- C:/dev/gdcm/2.5/bin/gdcmiod.dll
- C:/dev/gdcm/2.5/bin/gdcmjpeg12.dll
- C:/dev/gdcm/2.5/bin/gdcmjpeg16.dll
- C:/dev/gdcm/2.5/bin/gdcmjpeg8.dll
- C:/dev/gdcm/2.5/bin/gdcmmsff.dll
- C:/dev/gdcm/2.5/bin/gdcmopenjpeg.dll
- C:/dev/gdcm/2.5/bin/gdcmzlib.dll
- C:/dev/gdcm/2.5/bin/gdcmmsff.dll
- )
-
- set(LIBXML2_PACKAGE_LIBRARIES
- C:/dev/libxml2/2.9.1/bin/libiconv-2.dll
- C:/dev/libxml2/2.9.1/bin/libxml2-2.dll
- C:/dev/libxml2/2.9.1/bin/zlib1.dll
- )
-
- set(XERCES_C_PACKAGE_LIBRARIES
- C:/dev/xerces-c/3.1.1/bin/xerces-c_3_1.dll
- )
-
- else() # 32bits installer
-
- # Qt libraries
- set(QT_PACKAGE_LIRABRIES
- C:/dev_x86/Qt/4.8.5/bin/QtCore4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtGui4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtSvg4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtXml4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtNetwork4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtSql4.dll
- C:/dev_x86/Qt/4.8.5/bin/QtWebKit4.dll
- )
-
- # VTK libraries
- # set(VTK_DIR ${VTK_DIR}/../../bin)
- set(VTK_PACKAGE_LIBRARIES
- C:/dev_x86/VTK/5.10.1/bin/QVTK.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkCommon.dll
- C:/dev_x86/VTK/5.10.1/bin/vtksys.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkFiltering.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkGraphics.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkHybrid.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkIO.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkImaging.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkRendering.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkVolumeRendering.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkverdict.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkDICOMParser.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkNetCDF.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkNetCDF_cxx.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkexpat.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkjpeg.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkmetaio.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkpng.dll
- C:/dev_x86/VTK/5.10.1/bin/vtktiff.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkzlib.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkInfovis.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkfreetype.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkftgl.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkalglib.dll
- C:/dev_x86/VTK/5.10.1/bin/vtklibxml2.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkViews.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkexoIIc.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkWidgets.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkhdf5.dll
- C:/dev_x86/VTK/5.10.1/bin/vtkhdf5_hl.dll
- C:/dev_x86/VTK/5.10.1/bin/LSDyna.dll
- )
-
- #ITK Library
- set(ITK_PACKAGE_LIBRARIES
- C:/dev_x86/ITK/4.3.2/bin/ITKCommon-4.3.dll
- )
-
- # GDCM libraries
- set(GDCM_PACKAGE_LIBRARIES
- C:/dev_x86/gdcm/2.2.5/bin/vtkgdcm.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmcommon.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmcharls.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmdict.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmdsed.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmexpat.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmiod.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg12.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg16.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg8.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmmsff.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmopenjpeg.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmzlib.dll
- C:/dev_x86/gdcm/2.2.5/bin/gdcmmsff.dll
- )
-
- set(LIBXML2_PACKAGE_LIBRARIES
- C:/dev_x86/libxml2/2.7.8/bin/iconv.dll
- C:/dev_x86/libxml2/2.7.8/bin/libxml2.dll
- C:/dev_x86/libxml2/2.7.8/bin/zlib1.dll
- )
-
- set(XERCES_C_PACKAGE_LIBRARIES
- C:/dev_x86/xerces-c/3.1.1/bin/xerces-c_3_1.dll
- )
- endif() # end compiler specific settings
-
- # Additional libraries to install with the installer
- set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
- ${QT_PACKAGE_LIRABRIES}
- ${VTK_PACKAGE_LIBRARIES}
- ${ITK_PACKAGE_LIBRARIES}
- ${GDCM_PACKAGE_LIBRARIES}
- ${LIBXML2_PACKAGE_LIBRARIES}
- ${XERCES_C_PACKAGE_LIBRARIES}
- )
-
- # By default, do not warn when built on machines using only VS Express:
- if(NOT DEFINED CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS)
- SET(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS ON)
- endif()
-
- # Tell CMake to copy CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS content into the package
- include(InstallRequiredSystemLibraries)
-
- # Application icon
- set(CAMITK_PACKAGE_ICON "${CMAKE_CURRENT_SOURCE_DIR}\\\\sdk\\\\libraries\\\\core\\\\resources\\\\appIcon.ico") #set here the current icon for CamiTK
- set(CPACK_PACKAGE_ICON ${CAMITK_PACKAGE_ICON}) #icon for the top bar NSIS installer
- set(CPACK_NSIS_MUI_ICON ${CAMITK_PACKAGE_ICON}) #icon for the generated install program (the .exe to run to install CamiTK).
- set(CPACK_NSIS_MUI_UNIICON ${CAMITK_PACKAGE_ICON}) #icon for the generated uninstall program (the .exe to run to uninstall CamiTK).
-
- # Create desktop icons, by forcing CPack to build an internal command, as 'set(CPACK_NSIS_MODIFY_PATH ON)' option setted in the additional page doesn't work.
- set(CPACK_NSIS_EXTRA_INSTALL_COMMANDS "CreateShortCut \\\"$DESKTOP\\\\${CAMITK_PROJECT_NAME}-imp.lnk\\\" \\\"$INSTDIR\\\\bin\\\\camitk-imp.exe\\\"")
-
- # Tell CPack to remove the icons after uninstalling
- set(CPACK_NSIS_EXTRA_UNINSTALL_COMMANDS "Delete \\\"$DESKTOP\\\\${CAMITK_PROJECT_NAME}-imp.lnk\\\"")
-
- # Installer name
- set(CPACK_NSIS_DISPLAY_NAME "CamiTK ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}")
- set(CPACK_NSIS_INSTALLED_ICON_NAME ${CAMITK_PROJECT_NAME})
-
- set(CPACK_PACKAGE_INSTALL_DIRECTORY ${CAMITK_PROJECT_NAME})
- set(CPACK_NSIS_HELP_LINK "http:\\\\\\\\camitk.imag.fr")
- set(CPACK_NSIS_URL_INFO_ABOUT "http:\\\\\\\\camitk.imag.fr")
- set(CPACK_NSIS_CONTACT ${CPACK_PACKAGE_CONTACT})
-
-endif()
-
-# ---------------
-# Mac App Bundle
-# ---------------
-if(PACKAGING_NSIS AND APPLE)
- # TODO test this!
- set(CPACK_GENERATOR "PackageMaker")
- # Libraries are bundled directly
- set(CPACK_COMPONENT_LIBRARIES_HIDDEN TRUE)
- # Bundle Properties
- set(MACOSX_BUNDLE_BUNDLE_NAME ${CPACK_PACKAGE_NAME})
- set(MACOSX_BUNDLE_BUNDLE_VERSION ${PROJECT_VERSION})
- set(MACOSX_BUNDLE_SHORT_VERSION_STRING ${PROJECT_VERSION})
- set(MACOSX_BUNDLE_LONG_VERSION_STRING "Version ${PROJECT_VERSION}")
-endif()
-
-
-
-# Set up CPack configuration
-include(CPack)
-
-# Create the groups that will contains the installer components
-cpack_add_component_group(SDK
- DISPLAY_NAME "CamiTK SDK"
- DESCRIPTION "The CamiTK SDK features the core and basics extensions. CamiTK installation requires at least the SDK"
- BOLD_TITLE
- )
-cpack_add_component_group(CEP_IMAGING
- DISPLAY_NAME "CEP Imaging"
- DESCRIPTION "The CamiTK Extension Project IMAGING contains image processing extensions. Those extensions are optional."
- )
-cpack_add_component_group(CEP_MODELING
- DISPLAY_NAME "CEP Modeling"
- DESCRIPTION "The CamiTK Extension Project MODELING contains biomechanical extensions. Those extensions are optional."
- )
-
-# ----------------------------------
-# CamiTK specific packaging targets
-# ----------------------------------
-
-# create specific target for package source
-# When packaging, copy the CamiTKPackageVersion.h file to the source directory
-# Don't forget to remove it immediatly after packaging.
-add_custom_target(camitk_package_source
- COMMAND ${CMAKE_COMMAND}
- -E copy ${CMAKE_CURRENT_BINARY_DIR}/CamiTKPackageVersion.h
- ${CMAKE_CURRENT_SOURCE_DIR}/sdk/libraries/core/CamiTKVersion.h
- COMMAND ${CMAKE_COMMAND}
- --build ${CMAKE_BINARY_DIR}
- --target package_source
- COMMAND ${CMAKE_COMMAND}
- -E remove -f ${CMAKE_CURRENT_SOURCE_DIR}/sdk/libraries/core/CamiTKVersion.h
-)
-
-# This target create the installer / linux package.
-# On windows, you have configured with PACKAGING_NSIS=TRUE => all project names have their "-" replaced by "_" character
-# NSIS doesn't support "-" character.
-add_custom_target(camitk_package
- COMMAND ${CMAKE_COMMAND}
- -E copy ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
- ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h-backup
- COMMAND ${CMAKE_COMMAND}
- -E copy ${CMAKE_CURRENT_BINARY_DIR}/CamiTKPackageVersion.h
- ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
- COMMAND ${CMAKE_COMMAND}
- --build ${CMAKE_BINARY_DIR}
- --target PACKAGE --config Release
- COMMAND ${CMAKE_COMMAND}
- -E copy ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h-backup
- ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
-)
-
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKParseTestAdd.cmake b/sdk/cmake/modules/macros/CamiTKParseTestAdd.cmake
deleted file mode 100644
index dc40df7..0000000
--- a/sdk/cmake/modules/macros/CamiTKParseTestAdd.cmake
+++ /dev/null
@@ -1,42 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_parse_test_add adds an extension (action or component) automatic test level information
-#! Typically recursively call this function accross all actions and components to generate CamiTKTestsLevel.txt file.
-#!
-#! Usage:
-#! \code
-#! camitk_parse_test_add(NAME
-#! LEVEL
-#! DESCRIPTION
-#! )
-#! \endcode
-#!
-#! \param NAME The name of the test for the extension
-#! \param LEVEL The level of automatic test (between 0, 1, 2, 3)
-#! \param DESCRIPTION The description of the automatic test
-macro(camitk_parse_test_add)
- parse_arguments(CAMITK_PARSE_TEST_ADD
- "NAME;LEVEL;DESCRIPTION" # possible lists
- "" #possible options
- ${ARGN}
- )
-
- # Test required inputs have been given to the macro
- if(NOT DEFINED CAMITK_PARSE_TEST_ADD_NAME)
- message(FATAL_ERROR "camitk_parse_test_add: the name is required")
- endif()
- if(NOT DEFINED CAMITK_PARSE_TEST_ADD_LEVEL)
- message(FATAL_ERROR "camitk_parse_test_add: the level is required")
- endif()
- if(NOT DEFINED CAMITK_PARSE_TEST_ADD_DESCRIPTION)
- message(FATAL_ERROR "camitk_parse_test_add: the description is required")
- endif()
-
- # Store these information as a new entry of test level
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|- style=\"background-color: #EEEEEE\" \\n" CACHE INTERNAL "")
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "| style=\"width: 35%\" |${CAMITK_PARSE_TEST_ADD_NAME} \\n" CACHE INTERNAL "")
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "| style=\"width: 15%\" |'''${CAMITK_PARSE_TEST_ADD_LEVEL}''' \\n" CACHE INTERNAL "")
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|| ${CAMITK_PARSE_TEST_ADD_DESCRIPTION} \\n\\n" CACHE INTERNAL "")
-
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKParseTestInit.cmake b/sdk/cmake/modules/macros/CamiTKParseTestInit.cmake
deleted file mode 100644
index e0d17ce..0000000
--- a/sdk/cmake/modules/macros/CamiTKParseTestInit.cmake
+++ /dev/null
@@ -1,15 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! MACRO camitk_parse_test_init create a CMake variable to store all the automatically generated tests for action & component level information.
-#!
-#! usage:
-#! \code
-#! camitk_parse_test_init()
-#! \endcode
-macro(camitk_parse_test_init)
- set(CAMITK_EXTENSIONS_TESTS_LEVEL "{| class=\"wikitable\"{| style=\"background-color: #CCCCCC\" \\n" CACHE INTERNAL "")
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|+ List of automatically generated tests per extension (action and component) \\n" CACHE INTERNAL "")
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "! Component / Action Test Name !! Test Level !! Test Description \\n\\n" CACHE INTERNAL "")
-endmacro()
-
diff --git a/sdk/cmake/modules/macros/CamiTKParseTestValidate.cmake b/sdk/cmake/modules/macros/CamiTKParseTestValidate.cmake
deleted file mode 100644
index 18fa7f4..0000000
--- a/sdk/cmake/modules/macros/CamiTKParseTestValidate.cmake
+++ /dev/null
@@ -1,23 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_parse_test_validate generate the CamiTKTestsLevel.txt file which contains the CamiTK wiki entries (store in a tab) which describes for all CamiTK actions & components the different level of tests
-#!
-#! Usage:
-#! \code
-#! camitk_parse_test_add()
-#! \endcode
-
-macro(camitk_parse_test_validate)
- # Close the wiki tab
- set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|}" CACHE INTERNAL "")
-
- # Write down the CamiTKTestsLevel.txt file
- set(filename "${CMAKE_BINARY_DIR}/CamiTKTestsLevel.txt")
- string(REPLACE "\\n" "\n" CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL})
- file(WRITE ${filename} ${CAMITK_EXTENSIONS_TESTS_LEVEL})
- message(STATUS "Generated ${filename} for tests level description")
-
-
-endmacro()
-
diff --git a/sdk/cmake/modules/macros/CamiTKSubProjectAdd.cmake b/sdk/cmake/modules/macros/CamiTKSubProjectAdd.cmake
deleted file mode 100644
index 21c1d85..0000000
--- a/sdk/cmake/modules/macros/CamiTKSubProjectAdd.cmake
+++ /dev/null
@@ -1,94 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_sub_project_add adds a subproject definition from targets and its dependencies (if any) to the variable
-#! Typically recursively call this function accross all targets to generate Project.xml file.
-#!
-#! Usage:
-#! \code
-#! camitk_sub_project_add(ACTION|COMPONENT|CEP_LIBRARY|APPLICATION target name
-#! [DEPENDENCIES dep1 dep2 dep3]
-#!
-#! )
-#! \endcode
-#!
-#! \param TARGET_TYPE name the library / exe program targeted for CMake compilation
-#! \param DEPENDENCIES (optional) the library dependencies to build the target
-macro(camitk_sub_project_add)
- parse_arguments(ADD_SUB_PROJECT
- "ACTION;COMPONENT;CEP_LIBRARY;APPLICATION;CORELIB;DEPENDENCIES" # possible lists
- "" #possible options
- ${ARGN}
- )
-
- # check types
- # CORE LIBRARIES
- if(ADD_SUB_PROJECT_CORELIB)
- set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_CORELIB})
- # Add the xml node for this current subproject
- set(xml_subproject_corelibraries ${xml_subproject_corelibraries} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
- set(xml_subproject_corelibraries ${xml_subproject_corelibraries} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
- endforeach()
- set(xml_subproject_corelibraries ${xml_subproject_corelibraries} " </SubProject>" CACHE INTERNAL "")
- endif()
-
- # LIBRARY
- if(ADD_SUB_PROJECT_CEP_LIBRARY)
- set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_CEP_LIBRARY})
- # Add the xml node for this current subproject
- set(xml_subproject_libraries ${xml_subproject_libraries} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
- set(xml_subproject_libraries ${xml_subproject_libraries} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
- endforeach()
- set(xml_subproject_libraries ${xml_subproject_libraries} " </SubProject>" CACHE INTERNAL "")
- set(CAMITK_CEP_LIBRARY_TARGETS ${CAMITK_CEP_LIBRARY_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK CEP library targets" FORCE)
- endif()
-
- # COMPONENTS
- if(ADD_SUB_PROJECT_COMPONENT)
- set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_COMPONENT})
- # Add the xml node for this current subproject
- set(xml_subproject_components ${xml_subproject_components} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
- set(xml_subproject_components ${xml_subproject_components} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
- endforeach()
- set(xml_subproject_components ${xml_subproject_components} " </SubProject>" CACHE INTERNAL "")
- set(CAMITK_COMPONENT_TARGETS ${CAMITK_COMPONENT_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK component targets" FORCE)
- endif()
-
- # ACTIONS
- if(ADD_SUB_PROJECT_ACTION)
- set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_ACTION})
- if(SUB_PROJECT_NAME STREQUAL "action-application")
- # Particular case of action-applications
- set(xml_subproject_action_application "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- set(xml_subproject_action_application ${xml_subproject_action_application} "\n <Dependency name=\"library-camitkcore\"/>" CACHE INTERNAL "")
- set(xml_subproject_action_application ${xml_subproject_action_application} " </SubProject>" CACHE INTERNAL "")
- else()
- # Add the xml node for this current subproject
- set(xml_subproject_actions ${xml_subproject_actions} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
- set(xml_subproject_actions ${xml_subproject_actions} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
- endforeach()
- set(xml_subproject_actions ${xml_subproject_actions} " </SubProject>" CACHE INTERNAL "")
- endif()
- set(CAMITK_ACTION_TARGETS ${CAMITK_ACTION_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK action targets" FORCE)
- endif()
-
- # APPLICATION
- if(ADD_SUB_PROJECT_APPLICATION)
- set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_APPLICATION})
- # Add the xml node for this current subproject
- set(xml_subproject_applications ${xml_subproject_applications} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
- foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
- set(xml_subproject_applications ${xml_subproject_applications} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
- endforeach()
- set(xml_subproject_applications ${xml_subproject_applications} " </SubProject>" CACHE INTERNAL "")
- set(CAMITK_APPLICATION_TARGETS ${CAMITK_APPLICATION_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK applications targets" FORCE)
- endif()
-
- # CDash subprojects listing
- set(CAMITK_SUBPROJECTS ${CAMITK_SUBPROJECTS} ${SUB_PROJECT_NAME} CACHE INTERNAL "")
-
-endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/CamiTKSubProjectInit.cmake b/sdk/cmake/modules/macros/CamiTKSubProjectInit.cmake
deleted file mode 100644
index 4d917bb..0000000
--- a/sdk/cmake/modules/macros/CamiTKSubProjectInit.cmake
+++ /dev/null
@@ -1,51 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! MACRO camitk_sub_project_init initializes the xml_subprojects variable to gather CamiTK subprojects
-#!
-#! usage:
-#! \code
-#! camitk_sub_project_init()
-#! \endcode
-macro(camitk_sub_project_init)
- if(CAMITK_EXTENSION_PROJECT_SET)
- if(NOT CAMITK_XML_PROJECT_DESCRIPTION)
- # This is a call to camitk_sub_project_init from the first CEP of a CEP Set
- set(CAMITK_XML_PROJECT_DESCRIPTION "<?xml version=\"1.0\"?><Project name=\"${CAMITK_EXTENSION_PROJECT_SET_NAME}\">" CACHE INTERNAL "")
- set(CAMITK_SUBPROJECTS "" CACHE INTERNAL "")
- # for .cep packaging
- set(CAMITK_ACTION_TARGETS "" CACHE STRING "List of CamiTK action targets" FORCE)
- set(CAMITK_COMPONENT_TARGETS "" CACHE STRING "List of CamiTK component targets" FORCE)
- set(CAMITK_CEP_LIBRARY_TARGETS "" CACHE STRING "List of CamiTK library targets" FORCE)
- set(CAMITK_APPLICATION_TARGETS "" CACHE STRING "List of CamiTK application targets" FORCE)
-
- # The different CMake variable to parse for CDash dependencies
- # This variables are CMake persistent
- set(xml_subproject_corelibraries "" CACHE INTERNAL "")
- set(xml_subproject_libraries "" CACHE INTERNAL "")
- set(xml_subproject_action_application "" CACHE INTERNAL "")
- set(xml_subproject_components "" CACHE INTERNAL "")
- set(xml_subproject_actions "" CACHE INTERNAL "")
- set(xml_subproject_applications "" CACHE INTERNAL "")
-
- endif()
- else()
- # This is a call to camitk_sub_project_init from a standalone CEP
- set(CAMITK_XML_PROJECT_DESCRIPTION "<?xml version=\"1.0\"?><Project name=\"${CMAKE_PROJECT_NAME}\">" CACHE INTERNAL "")
- set(CAMITK_SUBPROJECTS "" CACHE INTERNAL "")
- # for .cep packaging
- set(CAMITK_ACTION_TARGETS "" CACHE STRING "List of CamiTK action targets" FORCE)
- set(CAMITK_COMPONENT_TARGETS "" CACHE STRING "List of CamiTK component targets" FORCE)
- set(CAMITK_CEP_LIBRARY_TARGETS "" CACHE STRING "List of CamiTK library targets" FORCE)
- set(CAMITK_APPLICATION_TARGETS "" CACHE STRING "List of CamiTK application targets" FORCE)
-
- # The different CMake variable to parse for CDash dependencies
- # This variables are CMake persistent
- set(xml_subproject_corelibraries "" CACHE INTERNAL "")
- set(xml_subproject_libraries "" CACHE INTERNAL "")
- set(xml_subproject_action_application "" CACHE INTERNAL "")
- set(xml_subproject_components "" CACHE INTERNAL "")
- set(xml_subproject_actions "" CACHE INTERNAL "")
- set(xml_subproject_applications "" CACHE INTERNAL "")
- endif()
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKSubProjectValidate.cmake b/sdk/cmake/modules/macros/CamiTKSubProjectValidate.cmake
deleted file mode 100644
index 4e41555..0000000
--- a/sdk/cmake/modules/macros/CamiTKSubProjectValidate.cmake
+++ /dev/null
@@ -1,61 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_sub_project_validate validates the xml_subprojects variable by ending its xml tag
-#! i.e. By adding the closing </Project> xml node, this will close the xml data
-#! Then create the '${CMAKE_BINARY_DIR}/Project.xml file
-#! Use this file to send to the DashBoard to get the CEP and its subprojects definition
-#!
-#! Usage:
-#! \code
-#! camitk_sub_project_validate()
-#! \endcode
-#!
-#! \param CEP_SET (optional) should be added only if this is a CEP set validation
-macro(camitk_sub_project_validate)
- parse_arguments(ADD_SUB_PROJECT_VALIDATE
- "" # possible lists
- "CEP_SET" # possible options
- ${ARGN}
- )
-
- # if this a standalone CEP, then write the cdash xml report
- if(NOT CAMITK_EXTENSION_PROJECT_SET OR ADD_SUB_PROJECT_VALIDATE_CEP_SET)
- # Add the CDash dependencies in the correct order
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_corelibraries})
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_libraries})
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_action_application})
- # Add application-testcomponents
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"application-testcomponents\"> ")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"library-camitkcore \"/>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"action-application \"/>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} " </SubProject>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_components})
- # Add application-testactions
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"application-testactions\"> ")
- list(REMOVE_DUPLICATES CAMITK_COMPONENT_TARGETS) # avoid duplicates
- foreach(DEPENDENCY ${CAMITK_COMPONENT_TARGETS})
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"${DEPENDENCY}\"/>")
- endforeach()
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} " </SubProject>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_actions})
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_applications})
-
- # Add packaging source, packaging and api_doc target
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"package-source\">\n </SubProject>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"package\">\n </SubProject>")
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"apidoc\">\n </SubProject>")
-
- # Write down the Project.xml file
- set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n</Project>")
- set(filename "${CMAKE_BINARY_DIR}/Project.xml")
- file(WRITE ${filename} ${CAMITK_XML_PROJECT_DESCRIPTION})
- message(STATUS "Generated ${filename} for project description")
-
- # Write down subprojects.cmake filename
- list(REMOVE_DUPLICATES CAMITK_SUBPROJECTS)
- set(filename "${CMAKE_BINARY_DIR}/Subprojects.cmake")
- file(WRITE ${filename} "set(CAMITK_SUBPROJECTS ${CAMITK_SUBPROJECTS})")
- message(STATUS "Generated ${filename} for subprojects listing")
- endif()
-endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKTranslate.cmake b/sdk/cmake/modules/macros/CamiTKTranslate.cmake
deleted file mode 100644
index 07870ae..0000000
--- a/sdk/cmake/modules/macros/CamiTKTranslate.cmake
+++ /dev/null
@@ -1,132 +0,0 @@
-#!
-#! @ingroup group_sdk_cmake
-#!
-#! macro camitk_translate allows to perform the translation of any project (action, component, application and libraries) in several languages.
-#!
-#! The name of the CEP library is deduced from the name of the directory, unless LIBNAME is provided
-#!
-#! If the library is compiled as shared, it adds the needed library properties
-#! If it needs relocation flag fPIC (on some plateforms), this macro should determine
-#! if this is the case and specify this flag
-#!
-#! usage:
-#! \code
-#! camitk_translate(
-#! [EXTRA_LANGUAGE]
-#! [USE_FLAGS]
-#! )
-#! \endcode
-#!
-#! \param EXTRA_LANGUAGE optional, allows the translation of this additional language
-#! \param USE_FLAGS optional, use the flag directory to associate a flag per language
-macro(camitk_translate)
-
- if(NOT CAMITK_DISABLE_TRANSLATION) #To allow enabling or not translation, directly from CMake configure command
-
- parse_arguments(CAMITK_TRANSLATION
- "EXTRA_LANGUAGE" # possible lists
- "USE_FLAGS" # possible options
- ${ARGN}
- )
-
- #insert here your new language _xx
- set(CAMITK_TRANSLATIONS _en_fr)
-
- if(CAMITK_TRANSLATION_EXTRA_LANGUAGE)
- set(CAMITK_TRANSLATIONS ${CAMITK_TRANSLATIONS}_${CAMITK_TRANSLATION_EXTRA_LANGUAGE})
- endif()
-
- #create translate.pro file
- file (GLOB HEADER_FILES *.h *.hpp)
- file (GLOB CPP_FILES *.cpp)
- file (GLOB UI_FILES *.ui)
- set (FILES_TO_TRANSLATE ${FILES_TO_TRANSLATE} ${CPP_FILES} ${UI_FILES} ${HEADER_FILES} CACHE INTERNAL "Files to translate")
-
- file(WRITE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nHEADERS = ")
- foreach(F ${HEADER_FILES})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
- endforeach()
-
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nSOURCES = ")
- foreach(F ${CPP_FILES})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
- endforeach()
-
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nFORMS = ")
- foreach(F ${UI_FILES})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
- endforeach()
-
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nTRANSLATIONS = ")
-
- string(TOLOWER ${CAMITK_TRANSLATIONS} CAMITK_TRANSLATIONS)
- string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
- string(FIND ${CAMITK_TRANSLATIONS} "_" index)
-
- while(index GREATER -1)
- string(SUBSTRING ${CAMITK_TRANSLATIONS} ${index} 3 language)
-
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro translate${language}.ts)
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
-
- string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
- math(EXPR index "${index} + 1 ")
- math(EXPR longueur "${longueur} - ${index}")
- string(SUBSTRING ${CAMITK_TRANSLATIONS} ${index} ${longueur} CAMITK_TRANSLATIONS)
-
- string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
- string(FIND ${CAMITK_TRANSLATIONS} "_" index)
-
- endwhile(index GREATER -1)
-
- #file (COPY ${CMAKE_CURRENT_BINARY_DIR}/resources/translate/translate.pro DESTINATION ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate)
- #update translate_xx.ts files and create translate_xx.qm files
- set(WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate )
- find_path(QT_BINARY_DIR NAMES lupdate)
- execute_process (COMMAND ${QT_BINARY_DIR}/lupdate ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
- find_path(QT_BINARY_DIR NAMES lrelease)
- execute_process (COMMAND ${QT_BINARY_DIR}/lrelease ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
-
- #remove the translate.pro file
- file(REMOVE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
-
- #create the translate_extension_name.qrc file
- # Remember that the .qrc filename must be unique
- # Also, when having loaded all .qrc files within the application, you have to point on
- # each .qm file separately (i.e. use a specific prefix on each .qrc file)
- get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} EXTENSION_NAME)
-
- #create the translate.qrc file
- set(TRANSLATE_QRC_FILE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate_${EXTENSION_NAME}.qrc)
- file(WRITE ${TRANSLATE_QRC_FILE} "<!DOCTYPE RCC>\n")
- file(APPEND ${TRANSLATE_QRC_FILE} "<RCC version=\"1.0\">\n")
- file(APPEND ${TRANSLATE_QRC_FILE} "\t<qresource prefix=\"/translate_${EXTENSION_NAME}\">\n")
-
- file (GLOB QM_FILES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/*.qm)
- foreach(F ${QM_FILES})
- file(APPEND ${TRANSLATE_QRC_FILE} "\t\t<file>translate/${F}</file>\n")
- endforeach(F ${QM_FILES})
-
- file(APPEND ${TRANSLATE_QRC_FILE} "\t</qresource>\n")
- file(APPEND ${TRANSLATE_QRC_FILE} "</RCC>\n")
-
- #create the flags.qrc file
- if(CAMITK_TRANSLATION_USE_FLAGS)
- file(WRITE ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "<!DOCTYPE RCC>\n")
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "<RCC version=\"1.0\">\n")
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t<qresource prefix=\"/flags\">\n")
-
- file(GLOB PNG_FILES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR}/resources ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags/16/*.png)
-
- foreach(F ${PNG_FILES})
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t\t<file>${F}</file>\n")
- endforeach(F ${PNG_FILES})
-
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t</qresource>\n")
- file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "</RCC>\n")
- endif()
- endif()
-endmacro()
diff --git a/sdk/cmake/modules/macros/GatherHeadersAndSources.cmake b/sdk/cmake/modules/macros/GatherHeadersAndSources.cmake
index 28ff05d..add2b9d 100644
--- a/sdk/cmake/modules/macros/GatherHeadersAndSources.cmake
+++ b/sdk/cmake/modules/macros/GatherHeadersAndSources.cmake
@@ -28,10 +28,10 @@ macro(gather_headers_and_sources Name)
endif()
# manage Qt ui
- qt4_wrap_ui (UI ${File_UI})
+ qt5_wrap_ui (UI ${File_UI})
# manage Qt resources
- qt4_add_resources(QRC ${File_QRC})
+ qt5_add_resources(QRC ${File_QRC})
# find Q_OBJECT derived class
foreach(HEADER ${HEADERS})
@@ -40,9 +40,16 @@ macro(gather_headers_and_sources Name)
set(MOC_SOURCES ${MOC_SOURCES} ${HEADER})
endif(stream MATCHES "Q_OBJECT")
endforeach(HEADER)
-
- # manage Qt inherited sources
- qt4_wrap_cpp(QT_SRCS ${MOC_SOURCES})
+
+ # On Windows, Visual Studio, organize files in subdirectories
+ if(MSVC)
+ source_group("Header Files\\UI Files" FILES ${UI})
+ source_group("Source Files\\Moc Files" "moc_*")
+ source_group("Source Files\\CLI Files" "CommandLineOptions.*")
+ source_group("Source Files\\Resources Files" "qrc_*")
+ source_group("Source Files\\Resources Files" "*.qrc")
+ source_group("UI Files" FILES ${File_UI})
+ endif()
# name all headers
set (${Name}_HEADERS
diff --git a/sdk/cmake/modules/macros/GetGitInfo.cmake b/sdk/cmake/modules/macros/GetGitInfo.cmake
new file mode 100644
index 0000000..c04ae2a
--- /dev/null
+++ b/sdk/cmake/modules/macros/GetGitInfo.cmake
@@ -0,0 +1,53 @@
+#!
+#! @ingroup group_sdk_cmake
+#!
+#! macro get_git_info get the last value of commit count.
+#! Set CAMITK_GIT_COMMIT_COUNT variable with the last number of commits
+#!
+#! Usage:
+#! \code
+#! get_git_info(dir)
+#! \endcode
+#!
+#! \inparam dir (required) input directory path
+#!
+macro(get_git_info dir)
+ execute_process(COMMAND ${GIT_EXECUTABLE} rev-list HEAD --count
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE CAMITK_GIT_COMMIT_COUNT
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ execute_process(COMMAND ${GIT_EXECUTABLE} rev-parse --abbrev-ref HEAD
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE CAMITK_GIT_BRANCH
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ execute_process(COMMAND ${GIT_EXECUTABLE} log -1 --format=%h
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE CAMITK_GIT_ABBREVIATED_HASH
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ execute_process(COMMAND ${GIT_EXECUTABLE} log -1 --format=%H
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE CAMITK_GIT_HASH
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ execute_process(COMMAND ${GIT_EXECUTABLE} log -1 --format=%cd
+ WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+ OUTPUT_VARIABLE CAMITK_GIT_COMMITER_DATE
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ )
+
+ if(NOT CAMITK_GIT_COMMIT_COUNT)
+ message(WARNING "Unable to find the commit number using git : ${GIT_EXECUTABLE}")
+ set(CAMITK_GIT_COMMIT_COUNT "unknown")
+ set(CAMITK_GIT_BRANCH "unknown")
+ set(CAMITK_GIT_HASH "unknown")
+ set(CAMITK_GIT_ABBREVIATED_HASH "unknown")
+ endif()
+
+endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/GetSubdirectories.cmake b/sdk/cmake/modules/macros/GetSubdirectories.cmake
index 6302364..cc646c2 100644
--- a/sdk/cmake/modules/macros/GetSubdirectories.cmake
+++ b/sdk/cmake/modules/macros/GetSubdirectories.cmake
@@ -24,11 +24,11 @@ macro(get_subdirectories Name)
if (LS)
foreach(FILENAME ${LS})
if(IS_DIRECTORY ${FILENAME} AND EXISTS ${FILENAME}/CMakeLists.txt)
- get_directory_name(${FILENAME} DIRNAME)
- # ignore .svn
- if (NOT ${DIRNAME} STREQUAL ".svn")
+ get_directory_name(${FILENAME} DIRNAME)
+ # ignore .svn
+ if (NOT ${DIRNAME} STREQUAL ".svn")
set(${Name} ${${Name}} ${DIRNAME})
- endif()
+ endif()
endif()
endforeach()
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKAddSubDirectory.cmake b/sdk/cmake/modules/macros/camitk/CamiTKAddSubDirectory.cmake
new file mode 100644
index 0000000..7028bdb
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKAddSubDirectory.cmake
@@ -0,0 +1,27 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! camitk_add_subdirectory is a utility macro that add a source subdirectory only if:
+#! 1. it exists
+#! 2. it contains a CMakeLists
+#! This can avoid CMake warning (see cmake --help-policy CMP0014), but do the
+#! opposite: it prints out an information message when it succeed including the directory.
+#!
+#! Usage:
+#! \code
+#! camitk_add_subdirectory(subdir)
+#! \endcode
+#!
+#! \param subdir (required) the name of the source subdirectory to include
+#!
+#! \ingroup group_sdk_cmake
+#!
+macro(camitk_add_subdirectory DirectoryName)
+ if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${DirectoryName} AND EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${DirectoryName}/CMakeLists.txt)
+ set(SUBDIRECTORY_MESSAGE ${CMAKE_PROJECT_NAME})
+ if(CEP_NAME AND NOT ${CEP_NAME} STREQUAL ${CMAKE_PROJECT_NAME})
+ set(SUBDIRECTORY_MESSAGE "${SUBDIRECTORY_MESSAGE} ${CEP_NAME}")
+ endif()
+ add_subdirectory(${DirectoryName})
+ endif()
+endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKApplication.cmake b/sdk/cmake/modules/macros/camitk/CamiTKApplication.cmake
new file mode 100644
index 0000000..5657d6a
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKApplication.cmake
@@ -0,0 +1,682 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! macro camitk_application simplify writing a CMakeLists.txt for CamiTK application extension
+#!
+#! The name of the application is automatically the name of the directory from where this macro
+#! is called prefixed with "camitk-"
+#!
+#! On Unix additional system resources can also be automatically installed or configured: man pages,
+#! desktop file and XPM icons.
+#! - Man pages should be resources/camitk-appdirname.1 or resources/camitk-appdirname.1.in (in this
+#! case, it will be configured first).
+#! - Desktop file should be in resources/camitk-appdirname.desktop (refer to
+#! http://standards.freedesktop.org/desktop-entry-spec/desktop-entry-spec-latest.html and
+#! http://standards.freedesktop.org/menu-spec/1.0/apa.html for valid category details)
+#! - XPM icons should be found in resources/camitk-appdirname.xpm (an icon can also be used in
+#! to set the application icon (use setWindowIcon(QIcon(":/resources/camitk-appdirname.xpm")) as well)
+#!
+#! To write a simple man page, please refer to SDK application examples. If you need to
+#! generate a simple manpage or analyze the command line arguments, the CamiTK team recommands
+#! to use Code Synthesis CLI configuration (see http://codesynthesis.com/projects/cli)
+#!
+#! usage:
+#! \code
+#! camitk_application(
+#! [DISABLED]
+#! [NEEDS_ITK]
+#! [NEEDS_PYTHON]
+#! [NEEDS_CEP_LIBRARIES CEPLib1 CEPLib12 ...]
+#! [NEEDS_COMPONENT_EXTENSION component1 component2 ...]
+#! [NEEDS_ACTION_EXTENSION ation1 action2 ...]
+#! [DEFINES flag1 flag2 ...]
+#! [CXX_FLAGS flag1 flag2 ...]
+#! [ADDITIONAL_SOURCES source.cxx source.cpp ...]
+#! [INCLUDE_DIRECTORIES dir1 dir2 ...]
+#! [EXTERNAL_LIBRARIES lib1 lib2 ...]
+#! [EXTRA_TRANSLATE_LANGUAGE]
+#! )
+#! \endcode
+#!
+#! \param DISABLED means this is a default application is NOT to be compiled automatically
+#! \param NEEDS_ITK means this application requires ITK to be compiled / run.
+#! \param NEEDS_CEP_LIBRARIES list of needed camitk CEP libraries
+#! \param NEEDS_COMPONENT_EXTENSION list of needed component extensions
+#! \param NEEDS_ACTION_EXTENSION list of needed component extensions
+#! \param DEFINES list of define flags to add at compilation time
+#! \param CXX_FLAGS list of compiler flags to add (such as warning levels (-Wall ...)).
+#! \param ADDITIONAL_SOURCES list of additional sources (that cannot be automatically found by gather_headers_and_sources macro)
+#! \param CEP_NAME specify the CEP_NAME, which is used to categorized the application for packaging purpose
+#! No CEP_NAME provided will result in default categorization (generic application).
+#! \param DESCRIPTION Simple description of the application. Used for packaging presentation for instance.
+#! \param INCLUDE_DIRECTORIES additional include directories
+#! \param EXTERNAL_LIBRARIES external libraries to add to the link command
+#! \param EXTRA_TRANSLATE_LANGUAGE Additionnal extra language to translate the application
+macro(camitk_application)
+
+ # Instruct CMake to run moc automatically when needed.
+ set(CMAKE_AUTOMOC ON)
+
+ #########################################################################
+ # #
+ # ARGUMENTS PARSING #
+ # #
+ # * Use a macro to create the CMAKE variables according to the #
+ # provided options as input. #
+ # #
+ #########################################################################
+
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} APPLICATION_NAME)
+
+ parse_arguments(${APPLICATION_NAME_CMAKE}
+ "NEEDS_CEP_LIBRARIES;NEEDS_TOOL;NEEDS_COMPONENT_EXTENSION;NEEDS_ACTION_EXTENSION;DEFINES;CXX_FLAGS;ADDITIONAL_SOURCES;CEP_NAME;DESCRIPTION;EXTERNAL_LIBRARIES;INCLUDE_DIRECTORIES;EXTRA_TRANSLATE_LANGUAGE" # possible lists
+ "DISABLED;NEEDS_QT_MODULES;NEEDS_ITK;NEEDS_QTXML;NEEDS_XSD;NEEDS_XERCESC;NEEDS_PYTHON" # possible options
+ ${ARGN}
+ )
+
+
+
+ #########################################################################
+ # #
+ # CREATE CMAKE VARIABLES #
+ # #
+ # * Create required and useful CMake variables for the macro #
+ # #
+ #########################################################################
+
+ # CMAKE CACHE VARIABLE
+ # if it is the first cmake run, create the application variable with a correct initial value
+ if(NOT APPLICATION_${APPLICATION_NAME_CMAKE}_INTERNAL)
+ # add option to enable/disable this extension and set it to true by default
+ # Building the extension can be disabled by giving the argument DISABLED to the macro
+ # or by passing the flag -D${TYPE_EXTENSION_CMAKE}_${APPLICATION_NAME_CMAKE}_DISABLED:BOOL=TRUE
+ if(${APPLICATION_NAME_CMAKE}_DISABLED)
+ set(APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED FALSE)
+ else()
+ set(APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED TRUE)
+ endif()
+ set(APPLICATION_${APPLICATION_NAME_CMAKE} ${APPLICATION_${APPLICATION_NAME_CMAKE}_ENABLED} CACHE BOOL "Build application ${APPLICATION_NAME}")
+ set(APPLICATION_${APPLICATION_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable APPLICATION_${APPLICATION_NAME} already created?")
+ endif()
+
+ # APPLICATION TARGET NAME
+ if (PACKAGING_NSIS)
+ # NSIS requires that cpack component names do not feature space or "-" characters
+ set(APPLICATION_TARGET_NAME application_${APPLICATION_NAME})
+ else()
+ set(APPLICATION_TARGET_NAME application-${APPLICATION_NAME})
+ endif()
+
+
+
+ # if this extension is enabled, do everything needed
+ # otherwise... do nothing
+ if (APPLICATION_${APPLICATION_NAME_CMAKE})
+
+ message(STATUS "Building application ${APPLICATION_NAME}")
+
+
+
+ #########################################################################
+ # #
+ # INCLUDE DIRECTORIES #
+ # #
+ # * Include basic directories where to look header files #
+ # * Include also additional user provided directories #
+ # * These directories are used for compilation step #
+ # #
+ #########################################################################
+ # BASIC DIRECTORIES
+ include_directories(${CAMITK_INCLUDE_DIRECTORIES})
+ include_directories(${CMAKE_CURRENT_BINARY_DIR})
+ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+
+ # USER INPUT DIRECTORIES
+ include_directories(${${APPLICATION_NAME_CMAKE}_INCLUDE_DIRECTORIES})
+
+
+
+ #########################################################################
+ # #
+ # GATHER RESSOURCES #
+ # #
+ # * get all the headers (.h) and source files (.cpp) of the project #
+ # * create the needed Qt files (using moc and uic) #
+ # * On Windows, Visual Studio, group .moc and .ui files #
+ # in subdirectories #
+ # #
+ #########################################################################
+
+ # get all headers, sources and do what is needed for Qt
+ # one need to do this just before the add_library so that all defines, include directories and link directories
+ # are set properly (gather_headers_and_sources include the call to Qt moc and uic)
+ gather_headers_and_sources(${APPLICATION_NAME})
+
+
+
+ #########################################################################
+ # #
+ # TARGET COMPILATION DEFINITION #
+ # #
+ # * Additional sources files to consider at compilation (.cpp) #
+ # * CMake project target definition #
+ # #
+ #########################################################################
+ # EXTERNAL SOURCES
+ set(${APPLICATION_NAME}_SOURCES ${${APPLICATION_NAME}_SOURCES} ${${APPLICATION_NAME_CMAKE}_ADDITIONAL_SOURCES})
+
+ # APPLE BUNDLE DEFINITIONS
+ if(APPLE)
+ set(MACOSX_BUNDLE_INFO_STRING "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
+ set(MACOSX_BUNDLE_BUNDLE_VERSION "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
+ set(MACOSX_BUNDLE_LONG_VERSION_STRING "${APPLICATION_TARGET_NAME} ${CAMITK_SHORT_VERSION_STRING}")
+ set(MACOSX_BUNDLE_SHORT_VERSION_STRING "${CAMITK_SHORT_VERSION_STRING}")
+ set(MACOSX_BUNDLE_COPYRIGHT "2014 UJF")
+ set(MACOSX_BUNDLE_ICON_FILE "${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.icns")
+ set(MACOSX_BUNDLE_BUNDLE_NAME "${APPLICATION_TARGET_NAME}")
+
+ set(MACOSX_BUNDLE_RESOURCES "${CMAKE_CURRENT_BINARY_DIR}/${APPLICATION_TARGET_NAME}.app/Contents/Resources")
+ set(MACOSX_BUNDLE_ICON "${MACOSX_BUNDLE_ICON_FILE}")
+ execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${MACOSX_BUNDLE_RESOURCES})
+ execute_process(COMMAND ${CMAKE_COMMAND} -E copy_if_different ${MACOSX_BUNDLE_ICON} ${MACOSX_BUNDLE_RESOURCES})
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # ADDITIONAL KNOWN LIBRARY DEPENDENCIES #
+ # #
+ # * Look for specific library needed #
+ # * Specific libraries are specified as option with the #
+ # NEEDS_LIBRARY syntax (see macro syntax for more options) #
+ # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
+ # #
+ #########################################################################
+
+ # Looking for ITK
+ set(ITK_LIBRARIES "")
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_ITK)
+ find_package(ITK REQUIRED)
+ if(ITK_FOUND)
+ include(${ITK_USE_FILE})
+ set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
+ set(CAMITK_ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR})
+ message(STATUS "${APPLICATION_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
+
+ if ((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "5")) # ITK 4.9 on Windows, maybe a lesser version for Linux.
+ if(MSVC)
+ set(ITK_DIR ${ITK_DIR}/../..)
+ # Construct list of ITK libraries for linking = CAMITK_ITK_LIBRARIES
+ foreach(ITK_LIBRARY ${ITK_LIBRARIES})
+ string(SUBSTRING ${ITK_LIBRARY} 0 3 ${ITK_LIBRARY}_PREFIX)
+ # Some libraries have not the expected 'itk' prefix. Add it then
+ if((NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "itk") AND (NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "ITK"))
+ set(ITK_LIBRARY itk${ITK_LIBRARY})
+ endif()
+ set(CAMITK_ITK_LIBRARIES ${CAMITK_ITK_LIBRARIES} debug ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}.lib)
+ endforeach()
+ elseif(UNIX)
+ set(CAMITK_ITK_LIBRARIES ${ITK_LIBRARIES})
+ elseif(APPLE)
+ message(WARNING "CamiTKExtension.cmake: ITK LIBRARY NOT SET FOR APPLE")
+ endif()
+ else()
+ message(FATAL_ERROR "Wrong version of ITK : ${ITK_VERSION}. Required is at least 4.x to 4.9")
+ endif()
+ else()
+ message(FATAL_ERROR "ITK not found but required for ${APPLICATION_TARGET_NAME}")
+ endif()
+ endif()
+
+ # XERCES-C
+ set(XERCESC_LIBRARIES)
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_XERCESC)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${APPLICATION_NAME}: xerces-c required. Please provide Xerces-C path.")
+ endif()
+ endif()
+
+ # XSD
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_XSD)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ find_package(XSD REQUIRED)
+ include_directories(${XSD_INCLUDE_DIR})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${APPLICATION_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
+ endif()
+ endif()
+
+ # PYTHON
+ set(PYTHON_LIBRARIES "")
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_PYTHON)
+ message(STATUS "Python needed by ${APPLICATION_NAME}")
+ find_package(PythonLibs 2.7 REQUIRED)
+ if(PYTHONLIBS_FOUND)
+ message(STATUS "Python found (needed by ${APPLICATION_NAME})")
+ include_directories(${PYTHON_INCLUDE_DIRS})
+ # PYTHON_LIRARIES is automatically and correctly set by find_package
+ else()
+ message(FATAL_ERROR "Python (2.7 or above) is required by ${APPLICATION_NAME} : please add your python installation dir to your PATH environment variable")
+ endif()
+ endif()
+
+ # EXTERNAL LIBRARIES
+ set(EXTERNAL_LIBRARIES)
+ if(${APPLICATION_NAME_CMAKE}_EXTERNAL_LIBRARIES)
+ foreach(EXTERNAL_LIBRARY ${${APPLICATION_NAME_CMAKE}_EXTERNAL_LIBRARIES})
+ if (MSVC) # TODO We have to decide how to handle debug version of external libraries
+ set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES}
+ debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${EXTERNAL_LIBRARY}
+ )
+ else()
+ set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
+ endif()
+ endforeach()
+ endif()
+
+ # BACKWARD COMPATIBILITY
+ # NEEDS_TOOLS option
+ # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
+ # check deprecated (and warn)
+ # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_TOOL)
+ message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_application macro option NEEDS_TOOL is deprecated, please use NEEDS_CEP_LIBRARIES instead..")
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${${APPLICATION_NAME_CMAKE}_NEEDS_TOOL})
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINK DIRECTORIES #
+ # #
+ # * Link directories are used to indicate the compiler where #
+ # to look for folder containing libraries to link with. #
+ # #
+ #########################################################################
+ # CAMITK BASIC LIB DIRECTORIES
+ link_directories(${CAMITK_LINK_DIRECTORIES})
+
+
+
+ #########################################################################
+ # #
+ # TARGET COMPILATION DEFINITION #
+ # #
+ # * Additional sources files to consider at compilation (.cpp) #
+ # * CMake project target definition #
+ # #
+ #########################################################################
+ # CMAKE TARGET DEFINITION
+ add_executable(${APPLICATION_TARGET_NAME} ${${APPLICATION_NAME}_SOURCES})
+
+
+
+ #########################################################################
+ # #
+ # QT LINKING LIBRARIES #
+ # #
+ # * Set at linking the Qt5 libraries #
+ # #
+ #########################################################################
+ qt5_use_modules(${APPLICATION_TARGET_NAME} ${CAMITK_QT_COMPONENTS})
+
+
+
+ #########################################################################
+ # #
+ # CAMITK ACTION / COMPONENT / LIBRARIES DEPENDENCIES #
+ # #
+ # * Look for action / component / libraries dependencies #
+ # * Specific actions / components / libraries are specified as option #
+ # with the NEEDS_ACTION/COMPONENT_EXTENSION/CEP_LIBRARIES syntax #
+ # * Add dependencies to library-camitkcore and the testing #
+ # action/component if test are runned on it #
+ # #
+ #########################################################################
+
+ # 1st CAMITKCORE LIBRARY DEPENDENCY
+ add_dependencies(${APPLICATION_TARGET_NAME} ${CAMITK_CORE_TARGET_LIB_NAME})
+ # add the dependency to the core automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS ${CAMITK_CORE_TARGET_LIB_NAME})
+
+ # 2nd COMPONENTS DEPENDENCIES
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION)
+ set(COMPONENTS_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(COMPONENT_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES}
+ debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/components/${COMPONENT_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${COMPONENT_NEEDED}
+ )
+ else()
+ set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES} ${COMPONENT_NEEDED})
+ endif()
+ # CMake / CDash dependencies
+ if(PACKAGING_NSIS)
+ add_dependencies(${APPLICATION_TARGET_NAME} component_${COMPONENT_NEEDED})
+ # add the dependency to the component automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS component_${COMPONENT_NEEDED})
+ else()
+ add_dependencies(${APPLICATION_TARGET_NAME} component-${COMPONENT_NEEDED})
+ set(COMPONENTS_DEPENDENCY_LIST ${COMPONENTS_DEPENDENCY_LIST} component-${COMPONENT_NEEDED})
+ # add the dependency to the component automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS component-${COMPONENT_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+ # 3rd ACTIONS DEPENDENCIES
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION)
+ set(ACTIONS_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(ACTION_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/actions/${ACTION_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/actions/${ACTION_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES}
+ debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/${ACTION_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${ACTION_NEEDED}
+ )
+ else()
+ set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES} ${ACTION_NEEDED})
+ endif()
+ # CMake / CDash dependencies
+ if (PACKAGING_NSIS)
+ add_dependencies(${APPLICATION_TARGET_NAME} action_${ACTION_NEEDED})
+ # add the dependency to the action automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS action_${ACTION_NEEDED})
+ else()
+ add_dependencies(${APPLICATION_TARGET_NAME} action-${ACTION_NEEDED})
+ set(ACTIONS_DEPENDENCY_LIST ${ACTIONS_DEPENDENCY_LIST} action-${ACTION_NEEDED})
+ # add the dependency to the action automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS action-${ACTION_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+ # 4th CEP LIBRARIES DEPENDENCIES
+ if(${APPLICATION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
+ set(CEP_LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(CEP_LIBRARY_NEEDED ${${APPLICATION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${CEP_LIBRARY_NEEDED}
+ )
+ else()
+ if(PACKAGING_NSIS)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ else()
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ endif()
+ endif()
+ # CMake / CDash dependencies
+ if (PACKAGING_NSIS)
+ add_dependencies(${APPLICATION_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library_${CEP_LIBRARY_NEEDED})
+ else()
+ add_dependencies(${APPLICATION_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
+ set(CEP_LIBRARIES_DEPENDENCY_LIST ${CEP_LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${APPLICATION_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library-${CEP_LIBRARY_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # COMPILATION FLAG #
+ # #
+ # * Flags are options to give to the compiler #
+ # * Add user input flags #
+ # * Add platform specific flags #
+ # #
+ #########################################################################
+
+ # USER INPUT COMPILER FLAG
+ if(${APPLICATION_NAME_CMAKE}_DEFINES)
+ foreach (FLAG ${${APPLICATION_NAME_CMAKE}_DEFINES})
+ add_definitions(-D${FLAG})
+ endforeach()
+ endif()
+
+ # USER INPUT CUSTOM COMPILER FLAG
+ if(${APPLICATION_NAME_CMAKE}_CXX_FLAGS)
+ foreach (FLAG ${${APPLICATION_NAME_CMAKE}_CXX_FLAGS})
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${FLAG}")
+ endforeach()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINKING #
+ # #
+ # * Linking is the last stage of compilation #
+ # * Indicate what libraries to use for linking the target #
+ # #
+ #########################################################################
+ # LINKING LIBRARIES
+ target_link_libraries(${APPLICATION_TARGET_NAME} ${CAMITK_CORE_LIBRARIES} ${CAMITK_LIBRARIES} ${COMPONENT_EXTENSION_LIBRARIES} ${ACTION_EXTENSION_LIBRARIES} ${CEP_LIBRARIES} ${XERCESC_LIBRARY} ${CAMITK_ITK_LIBRARIES} ${PYTHON_LIBRARIES} ${EXTERNAL_LIBRARIES})
+
+
+
+ #########################################################################
+ # #
+ # OUTPUT #
+ # #
+ # * Define the output directory (location and name) #
+ # * Define the output name of the library #
+ # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
+ # #
+ #########################################################################
+
+ # OUTPUT NAME
+ if (MSVC)
+ set_target_properties(${APPLICATION_TARGET_NAME}
+ PROPERTIES OUTPUT_NAME camitk-${APPLICATION_NAME}
+ DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX}
+ )
+ else()
+ set_target_properties(${APPLICATION_TARGET_NAME}
+ PROPERTIES OUTPUT_NAME camitk-${APPLICATION_NAME}
+ )
+ endif()
+
+ # OUTPUT DIRECTORY LOCATION
+ # always in bin folder
+ set_target_properties(${APPLICATION_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
+ )
+
+ #########################################################################
+ # #
+ # INSTALLATION #
+ # #
+ # * When installing the project, header files (.h) and test data are #
+ # copied into a installation folder to determine. #
+ # * Indicate in this section, where to install your project and which #
+ # files to copy into that folder (during local/global installation) #
+ # #
+ #########################################################################
+
+ # FOLDER INSTALLATION
+ # Indicate where to install the application
+# if (NOT APPLE)
+ install(TARGETS ${APPLICATION_TARGET_NAME}
+ RUNTIME DESTINATION bin
+ COMPONENT ${APPLICATION_TARGET_NAME}
+ )
+ # else ()
+# set (PLUGINS QtCore QtGui QtXml QtXmlPatterns)
+# include(DeployQt4)
+# install_qt4_executable("bin/camitk-${APPLICATION_NAME}.app" "${PLUGINS}")
+# endif()
+
+
+
+ #########################################################################
+ # #
+ # CDASH SUBPROJECT DESCRIPTION #
+ # #
+ # * Update the XML descriton of the subprojects dependenicies #
+ # for CDash. #
+ # #
+ #########################################################################
+ # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
+ if(NOT ((APPLICATION_TARGET_NAME STREQUAL "application-testactions") OR (APPLICATION_TARGET_NAME STREQUAL "application-testcomponents")))
+ # We will add manually the CDash dependencies of the testing applications
+ # See CamiTKSubProjectValidate.cmake
+ camitk_sub_project_add(APPLICATION ${APPLICATION_TARGET_NAME} DEPENDENCIES library-camitkcore ${COMPONENTS_DEPENDENCY_LIST} ${ACTIONS_DEPENDENCY_LIST} ${CEP_LIBRARIES_DEPENDENCY_LIST})
+ endif()
+
+ #####################################################################################
+ # #
+ # TRANSLATION #
+ # #
+ # * CAMITK_TRANSLATIONS contains the list of language to translate #
+ # the QString to. #
+ # #
+ # * Create the translate.pro file which contains 4 sections: #
+ # - HEADERS: list of .h/.hpp files to look for tr("") QString #
+ # - SOURCES: list of .cpp files to look for tr("") QString #
+ # - FORMS: list of .ui files to look for tr("") QString #
+ # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
+ # to define each .ts file #
+ # #
+ # * Execute lupdate program to update the .ts files with new QString #
+ # found. #
+ # #
+ # * Execute lrelease program to create .qm files (binary equivalent of #
+ # .ts files #
+ # #
+ # * Create translate.qrc which contains the list of .qm files. #
+ # * Create the flags.qrc file which contains the list of .png flags #
+ # images #
+ # #
+ #####################################################################################
+ if(CAMITK_TRANSLATE)
+ if(${APPLICATION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
+ camitk_translate(EXTRA_LANGUAGE ${${APPLICATION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
+ else()
+ camitk_translate()
+ endif()
+ endif()
+
+
+ #########################################################################
+ # #
+ # PACKAGING CATEGORIZATION #
+ # #
+ # * On Windows, when building a package (win32 installer), the #
+ # install shield wizard proposes you to select which component #
+ # to install. #
+ # * Each component to install has a short description following its #
+ # name to understand its role. #
+ # * This section deals with the categorization and the description #
+ # of the component in this installer. #
+ # #
+ #########################################################################
+
+ # WINDOWS INSTALLER CATEGORIZATION
+ if(${APPLICATION_NAME_CMAKE}_CEP_NAME)
+ if (${APPLICATION_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
+ # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
+ cpack_add_component(${APPLICATION_TARGET_NAME}
+ DISPLAY_NAME ${APPLICATION_TARGET_NAME}
+ DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
+ REQUIRED
+ GROUP SDK
+ )
+
+ else()
+ # Extension is selectable for installation in the wizard of the installer
+ cpack_add_component(${APPLICATION_TARGET_NAME}
+ DISPLAY_NAME ${APPLICATION_TARGET_NAME}
+ DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
+ GROUP ${${APPLICATION_NAME_CMAKE}_CEP_NAME}
+ )
+ endif()
+ else()
+ # Extension if not categorized for packaging presentation
+ cpack_add_component(${APPLICATION_TARGET_NAME}
+ DISPLAY_NAME ${APPLICATION_TARGET_NAME}
+ DESCRIPTION ${${APPLICATION_NAME_CMAKE}_DESCRIPTION}
+ )
+
+ endif()
+
+ # additional unix system files/resources
+ if(UNIX)
+ # Man page installation
+ set(${APPLICATION_NAME_CMAKE}_MAN_PAGE ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.1)
+ if (EXISTS ${${APPLICATION_NAME_CMAKE}_MAN_PAGE})
+ message(STATUS "Found man page for ${APPLICATION_TARGET_NAME}")
+ install(FILES ${${APPLICATION_NAME_CMAKE}_MAN_PAGE}
+ DESTINATION ${CAMITK_APPLICATION_MAN_INSTALL_DIR}
+ )
+ else()
+ # check if .in exists
+ if (EXISTS ${${APPLICATION_NAME_CMAKE}_MAN_PAGE}.in)
+ message(STATUS "Found man page configuration file for ${APPLICATION_TARGET_NAME}")
+ install(CODE "message(STATUS \"Updating ${APPLICATION_NAME} man page (version ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR} as of ${CURRENT_DATE})\")")
+ # set variable in sub-cmake shell
+ install(CODE "set(APPLICATION_NAME ${APPLICATION_NAME})")
+ install(CODE "set(CURRENT_DATE ${CURRENT_DATE})")
+ install(CODE "set(CAMITK_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})")
+ install(CODE "set(CAMITK_VERSION_MINOR ${CAMITK_VERSION_MINOR})")
+ # remove previous version
+ install(CODE "execute_process(COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1)")
+ # configure current version
+ install(CODE "configure_file(${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.1.in ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1 @ONLY)")
+ # install file
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/camitk-${APPLICATION_NAME}.1 DESTINATION ${CAMITK_APPLICATION_MAN_INSTALL_DIR})
+ endif()
+ endif()
+
+ # Desktop file
+ set(${APPLICATION_NAME_CMAKE}_DESKTOP ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.desktop)
+ if (EXISTS ${${APPLICATION_NAME_CMAKE}_DESKTOP})
+ message(STATUS "Found desktop file for ${APPLICATION_TARGET_NAME}")
+ install(FILES ${${APPLICATION_NAME_CMAKE}_DESKTOP} DESTINATION ${CAMITK_APPLICATION_DESKTOP_INSTALL_DIR})
+ endif()
+
+ # application pixmap
+ set(${APPLICATION_NAME_CMAKE}_PIXMAP ${CMAKE_CURRENT_SOURCE_DIR}/resources/camitk-${APPLICATION_NAME}.xpm)
+ if (EXISTS ${${APPLICATION_NAME_CMAKE}_PIXMAP})
+ message(STATUS "Found pixmap for ${APPLICATION_TARGET_NAME}")
+ install(FILES ${${APPLICATION_NAME_CMAKE}_PIXMAP} DESTINATION ${CAMITK_APPLICATION_PIXMAP_INSTALL_DIR})
+ endif()
+
+ endif()
+
+ endif() #APPLICATION_${APPLICATION_NAME_CMAKE}
+
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKExtension.cmake b/sdk/cmake/modules/macros/camitk/CamiTKExtension.cmake
new file mode 100644
index 0000000..579d783
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKExtension.cmake
@@ -0,0 +1,1005 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! Macro camitk_extension simplifies writing a camitk extension (component, action)
+#!
+#! The name of the extension is automatically the name of the directory from where this macro
+#! is called, unless it is overriden by the TARGET_NAME parameter.
+#!
+#! usage:
+#! \code
+#! camitk_extension( <type>
+#! [DISABLED]
+#! [NEEDS_ITK]
+#! [NEEDS_LIBXML2]
+#! [NEEDS_OPENCV]
+#! [NEEDS_IGSTK]
+#! [NEEDS_XSD]
+#! [NEEDS_GDCM]
+#! [NEEDS_ACTION_EXTENSION action1 action2 ...]
+#! [NEEDS_COMPONENT_EXTENSION component1 component2 ...]
+#! [NEEDS_CEP_LIBRARIES CEPLib1 CEPLib2 ...]
+#! [INCLUDE_DIRECTORIES dir1 dir2 ...]
+#! [DEFINES flag1 flag2 ...]
+#! [CXX_FLAGS flag1 flag2 ...]
+#! [EXTERNAL_SOURCES file1 file2 ...]
+#! [EXTERNAL_LIBRARIES lib1 lib2 ...]
+#! [HEADERS_TO_INSTALL header1.h header2.h ...]
+#! [INSTALL_ALL_HEADERS]
+#! [TARGET_NAME non-default-targetname]
+#! [TEST_APPLICATION application-name]
+#! [DESCRIPTION description]
+#! [EXTRA_TRANSLATE_LANGUAGE]
+#! [TEST_FILES file1 file2 ...]
+#! )
+#! \endcode
+#!
+#! \param <type> = REQUIRED. The selected type of extension you wish to build.
+# possible values : ACTION_EXTENSION or COMPONENT_EXTENSION.
+#! \param DISABLED = means this is a not a default extension, it will not be compiled automatically
+#! \param NEEDS_ITK = add this if your component needs ITK.
+#! Do not forget to add the needed list of ITK libraries in the LIBRARIES parameter
+#! \param NEEDS_LIBXML2 = add this if your component needs libxml2
+#! \param NEEDS_XSD = add this if your action needs Codesynthesis xsd cxx (xml schema compiler)
+#! \param NEEDS_OPENCV = add this if your component needs OpenCV
+#! \param NEEDS_IGSTK = add this if your component needs IgsTK
+#! \param NEEDS_XERCESC = add this if your action / component needs XercesC library
+#! \param NEEDS_GDCM = Add this, if your extension requires GDCM 2.x library
+#! \param NEEDS_CEP_LIBRARIES = list of needed CEP libraries (not external dependencies)
+#! \param NEEDS_COMPONENT_EXTENSION = list of needed component extensions
+#! \param NEEDS_ACTION_EXTENSION = list of needed component extensions
+#! \param INCLUDE_DIRECTORIES = additional include directories
+#! \param DEFINES = list of define flags to add at compilation time.
+#! \param CXX_FLAGS = list of compiler flags to add (such as warning levels (-Wall ...)).
+#! \param EXTERNAL_SOURCES = list of extra source/headers files (external to the current directory)
+#! that needed to be added to the SOURCES variable.
+#! Note: EXTERNAL_SOURCES are not installed
+#! \param EXTERNAL_LIBRARIES = external libraries to add to the link command
+#! \param HEADERS_TO_INSTALL = list of headers to install, if present this will automatically
+#! create an "install-COMPONENT_NAMEcomponent" target, that can be used
+#! anywhere else to manage dependencies to this component.
+#! The headers are installed ${CAMITK_BUILD_INCLUDE_DIR}/COMPONENT_NAME
+#! when the target "install-COMPONENT_NAMEcomponent" is called.
+#! \param INSTALL_ALL_HEADERS = install all of the headers (this is the lazy solution, please consider
+#! making a list and using HEADERS_TO_INSTALL parameter instead!
+#! \param TARGET_NAME = specify a target name different than the default (default is the action/component directory name)
+#! this can be very useful for example when you have action/component directory in your CEP that has
+#! the same name as one in the camitk opensource.
+#! \param CEP_NAME = specify the CEP_NAME, which is used to categorized the extension for packaging purpose
+#! No CEP_NAME provided will result in default categorization (generic extension).
+#! \param TEST_APPLICATION = The name of the application to provide for generate automatic basic tests on your extension. No option means no tests!
+#! \param DESCRIPTION = Simple description of the extension. Used for packaging presentation for instance.
+#! \param EXTRA_TRANSLATE_LANGUAGE = Additionnal extra language to translate the application
+#! \param TEST_FILES = Parameter of TestActions module : REQUIRED. List of files on which the action must applied.
+
+macro(camitk_extension)
+
+
+ # Instruct CMake to run moc automatically when needed.
+ set(CMAKE_AUTOMOC ON)
+
+
+
+ #########################################################################
+ # #
+ # ARGUMENTS PARSING #
+ # #
+ # * Use a macro to create the CMAKE variables according to the #
+ # provided options as input. #
+ # #
+ #########################################################################
+
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} EXTENSION_NAME)
+
+ parse_arguments(${EXTENSION_NAME_CMAKE} #prefix
+ "NEEDS_TOOL;NEEDS_CEP_LIBRARIES;NEEDS_COMPONENT_EXTENSION;NEEDS_ACTION_EXTENSION;INCLUDE_DIRECTORIES;EXTERNAL_LIBRARIES;HEADERS_TO_INSTALL;DEFINES;CXX_FLAGS;EXTERNAL_SOURCES;TARGET_NAME;CEP_NAME;DESCRIPTION;TEST_APPLICATION;EXTRA_TRANSLATE_LANGUAGE;TEST_FILES" # possible lists
+ "NEEDS_QT_MODULES;ACTION_EXTENSION;COMPONENT_EXTENSION;DISABLED;NEEDS_XERCESC;NEEDS_ITK;NEEDS_LIBXML2;NEEDS_XSD;NEEDS_QTXML;NEEDS_OPENCV;NEEDS_IGSTK;INSTALL_ALL_HEADERS;NEEDS_GDCM;DISABLE_TESTLEVEL1;DISABLE_TESTLEVEL2;DISABLE_TESTLEVEL3" # possible options
+ ${ARGN}
+ )
+
+
+
+ #########################################################################
+ # #
+ # CREATE CMAKE VARIABLES #
+ # #
+ # * Create required and useful CMake variables for the macro #
+ # #
+ #########################################################################
+
+ # TYPE EXTENSION : ACTION or COMPONENT
+ if (${EXTENSION_NAME_CMAKE}_ACTION_EXTENSION)
+ set(TYPE_EXTENSION "action")
+ string(TOUPPER ${TYPE_EXTENSION} TYPE_EXTENSION_CMAKE)
+ elseif(${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION)
+ set(TYPE_EXTENSION "component")
+ string(TOUPPER ${TYPE_EXTENSION} TYPE_EXTENSION_CMAKE)
+ endif()
+
+ # CMAKE CACHE VARIABLE
+ # if it is the first cmake run, create the extension variable with a correct initial value
+ if(NOT ${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_INTERNAL)
+ # add option to enable/disable this extension and set it to true by default
+ # Building the extension can be disabled by giving the argument DISABLED to the macro
+ # or by passing the flag -D${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_DISABLED:BOOL=TRUE
+ if(${EXTENSION_NAME_CMAKE}_DISABLED)
+ set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED FALSE)
+ else()
+ set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED TRUE)
+ endif()
+ set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE} ${${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_ENABLED} CACHE BOOL "Build extension ${EXTENSION_NAME}")
+ set(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable ${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME} already created?")
+ endif()
+
+ # if this extension is enabled, do everything needed
+ # otherwise... do nothing
+ if (${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE})
+
+ # TARGET NAME
+ # The target name is composed of the following: [action / component]-name
+ # * action / component is the type of extension as prefix
+ # * name is deduced from the input folder containing the calling CMakeLists.txt file of the extension.
+ if (${EXTENSION_NAME_CMAKE}_TARGET_NAME)
+ set(${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME ${${EXTENSION_NAME_CMAKE}_TARGET_NAME})
+ else()
+ set(${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME ${EXTENSION_NAME})
+ endif()
+ # replace "-" by "_" if the extension is being packaged with NSIS, the program to create a Windows installer.
+ if (PACKAGING_NSIS)
+ # NSIS requires that cpack component names do not feature space or "-" characters
+ set(${TYPE_EXTENSION_CMAKE}_TARGET_NAME ${TYPE_EXTENSION}_${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME})
+ else()
+ set(${TYPE_EXTENSION_CMAKE}_TARGET_NAME ${TYPE_EXTENSION}-${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME})
+ endif()
+
+ message(STATUS "Building extension ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}")
+
+
+
+ #########################################################################
+ # #
+ # INCLUDE DIRECTORIES #
+ # #
+ # * Include basic directories where to look header files #
+ # * Include also additional user provided directories #
+ # * These directories are used for compilation step #
+ # #
+ #########################################################################
+ # BASIC DIRECTORIES
+
+ include_directories(${CAMITK_INCLUDE_DIRECTORIES})
+ include_directories(${CMAKE_CURRENT_BINARY_DIR})
+ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+
+ # USER INPUT DIRECTORIES
+ include_directories(${${EXTENSION_NAME_CMAKE}_INCLUDE_DIRECTORIES})
+
+
+
+ #########################################################################
+ # #
+ # GATHER RESSOURCES #
+ # #
+ # * Get all the headers (.h) and source files (.cpp) of the project #
+ # * Create the needed Qt files (using moc and uic) #
+ # * On Windows, Visual Studio, group .moc and .ui files #
+ # in subdirectories #
+ # #
+ #########################################################################
+
+ # get all headers, sources and do what is needed for Qt
+ # one need to do this just before the add_library so that all defines, include directories and link directories
+ # are set properly (gather_headers_and_sources include the call to Qt moc and uic)
+ gather_headers_and_sources(${EXTENSION_NAME_CMAKE})
+
+
+
+ #########################################################################
+ # #
+ # ADDITIONAL KNOWN EXTERNAL LIBRARY DEPENDENCIES #
+ # #
+ # * Look for specific library needed #
+ # * Specific libraries are specified as option with the #
+ # NEEDS_LIBRARY syntax (see macro syntax for more options) #
+ # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
+ # #
+ #########################################################################
+
+ # Looking for ITK
+ set(ITK_LIBRARIES "")
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_ITK)
+ find_package(ITK REQUIRED PATHS /usr/lib/InsightToolkit)
+ if(ITK_FOUND)
+ include(${ITK_USE_FILE})
+ set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
+ set(CAMITK_ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR})
+ message(STATUS "${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
+
+ if ((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "5")) # ITK 4.9 on Windows, maybe a lesser version for Linux.
+ if(MSVC)
+ set(ITK_DIR ${ITK_DIR}/../..)
+ # Construct list of ITK libraries for linking = CAMITK_ITK_LIBRARIES
+ foreach(ITK_LIBRARY ${ITK_LIBRARIES})
+ string(SUBSTRING ${ITK_LIBRARY} 0 3 ${ITK_LIBRARY}_PREFIX)
+ # Some libraries have not the expected 'itk' prefix. Add it then
+ if((NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "itk") AND (NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "ITK"))
+ set(ITK_LIBRARY itk${ITK_LIBRARY})
+ endif()
+ set(CAMITK_ITK_LIBRARIES ${CAMITK_ITK_LIBRARIES} debug ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}.lib)
+ endforeach()
+ elseif(UNIX)
+ set(CAMITK_ITK_LIBRARIES ${ITK_LIBRARIES})
+ elseif(APPLE)
+ message(WARNING "CamiTKExtension.cmake: ITK LIBRARY NOT SET FOR APPLE")
+ endif()
+ else()
+ message(FATAL_ERROR "Wrong version of ITK : ${ITK_VERSION}. Required is at least 4.x to 4.9")
+ endif()
+ else()
+ message(FATAL_ERROR "ITK not found but required for ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}")
+ endif()
+ endif()
+
+ # LIBXML2
+ set(LIBXML2_LIBRARY "")
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_LIBXML2)
+ # LibXml2 is required
+ find_package(Xml2)
+ if (LIBXML2_FOUND)
+ add_definitions(${LIBXML2_DEFINITIONS})
+ include_directories(${LIBXML2_INCLUDE_DIR})
+ set(LIBXML2_LIBRARY ${LIBXML2_LIBRARIES})
+ else()
+ # most probably win32 or crosscompiling
+ message(STATUS "${EXTENSION_NAME}: libxml2 required")
+ endif()
+ endif()
+
+ # OPENCV
+ set(OpenCV_LIBRARIES "")
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_OPENCV)
+ # OpenCV is required
+ find_package( OpenCV REQUIRED )
+ else ( )
+ set(OpenCV_LIBRARIES "")
+ endif()
+
+ # IGSTK
+ set(IGSTK_LIBRARIES "")
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_IGSTK)
+ find_package(IGSTK REQUIRED)
+ include(${IGSTK_USE_FILE})
+ else()
+ set(IGSTK_LIBRARIES "")
+ endif()
+
+ # XERCES-C
+ set(XERCESC_LIBRARIES)
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_XERCESC)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${EXTENSION_NAME}: xerces-c required. Please provide Xerces-C path.")
+ endif()
+ endif()
+
+ # XSD
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_XSD)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ find_package(XSD REQUIRED)
+ include_directories(${XSD_INCLUDE_DIR})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${EXTENSION_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
+ endif()
+ endif()
+
+ # GDCM 2.2.x
+ set(GDCM_LIBRARIES)
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_GDCM)
+ if(NOT GDCM_FOUND)
+ # Look for GDCM library only if not found (for instance, ITK has already search for it)
+ # Calling find_package(GDCM ..) more than once creates CMake errors.
+ find_package(GDCM 2.0 REQUIRED)
+ endif()
+ if(GDCM_FOUND)
+ include(${GDCM_USE_FILE})
+ if (MSVC)
+ set(GDCM_LIBRARIES
+ debug ${GDCM_DIR}/../gdcmcharls${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmCommon${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmDICT${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmDSED${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmexpat${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmgetopt${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmIOD${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmjpeg8${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmjpeg12${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmjpeg16${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmMEXD${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmMSFF${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmopenjpeg${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmzlib${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../socketxx${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../vtkgdcm${CAMITK_DEBUG_POSTFIX}.lib
+ debug ${GDCM_DIR}/../gdcmDSED${CAMITK_DEBUG_POSTFIX}.lib
+ optimized gdcmcharls gdcmCommon gdcmDICT gdcmDSED gdcmexpat
+ optimized gdcmgetopt gdcmIOD gdcmjpeg8 gdcmjpeg12 gdcmjpeg16
+ optimized gdcmMEXD gdcmMSFF gdcmopenjpeg gdcmzlib socketxx vtkgdcm
+ optimized gdcmDSED
+ )
+ else()
+ set(GDCM_LIBRARIES gdcmCommon gdcmDICT gdcmDSED gdcmMEXD gdcmMSFF vtkgdcm)
+ endif()
+ else()
+ message(ERROR "${EXTENSION_NAME}: GDCM 2.x library required. Please install GDCM.")
+ endif()
+ endif()
+
+ # EXTERNAL LIBRARIES
+ set(EXTERNAL_LIBRARIES)
+ if(${EXTENSION_NAME_CMAKE}_EXTERNAL_LIBRARIES)
+ foreach(EXTERNAL_LIBRARY ${${EXTENSION_NAME_CMAKE}_EXTERNAL_LIBRARIES})
+ if (MSVC)
+ set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES}
+ debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${EXTERNAL_LIBRARY}
+ )
+ else()
+ set(EXTERNAL_LIBRARIES ${EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
+ endif()
+ endforeach()
+ endif()
+
+ # BACKWARD COMPATIBILITY
+ # NEEDS_TOOLS option
+ # TODO CAMITK_DEPRECATED. This option is marked as deprecated. It is to be removed in CamiTK 4.0
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_TOOL)
+ message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_extension macro option NEEDS_TOOL is deprecated, please use NEEDS_CEP_LIBRARIES instead..")
+ set(${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES ${${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES} ${${EXTENSION_NAME_CMAKE}_NEEDS_TOOL})
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINK DIRECTORIES #
+ # #
+ # * Link directories are used to indicate the compiler where #
+ # to look for folder containing libraries to link with. #
+ # * Must be done BEFORE creating the CMake target with add_library #
+ # #
+ #########################################################################
+
+ # CAMITK BASIC LIB DIRECTORIES
+ link_directories(${CAMITK_LINK_DIRECTORIES})
+
+
+
+ #########################################################################
+ # #
+ # TARGET COMPILATION DEFINITION #
+ # #
+ # * Additional sources files to consider at compilation (.cpp) #
+ # * CMake project target definition #
+ # #
+ #########################################################################
+ # EXTERNAL SOURCES
+ set(${EXTENSION_NAME_CMAKE}_SOURCES ${${EXTENSION_NAME_CMAKE}_SOURCES} ${${EXTENSION_NAME_CMAKE}_EXTERNAL_SOURCES})
+
+ # CMAKE TARGET DEFINITION
+ add_library(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} SHARED ${${EXTENSION_NAME_CMAKE}_SOURCES})
+
+
+
+ #########################################################################
+ # #
+ # QT LINKING LIBRARIES #
+ # #
+ # * Set at linking the Qt5 libraries #
+ # #
+ #########################################################################
+ qt5_use_modules(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} ${CAMITK_QT_COMPONENTS})
+
+
+
+ #########################################################################
+ # #
+ # CAMITK ACTION / COMPONENT / LIBRARIES DEPENDENCIES #
+ # #
+ # * Look for action / component / libraries dependencies #
+ # * Specific actions / components / libraries are specified as option #
+ # with the NEEDS_ACTION/COMPONENT_EXTENSION/CEP_LIBRARIES syntax #
+ # * Add dependencies to library-camitkcore and the testing #
+ # action/component if test are runned on it #
+ # #
+ #########################################################################
+
+ # 1st CAMITKCORE LIBRARY DEPENDENCY
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} ${CAMITK_CORE_TARGET_LIB_NAME})
+ # add the dependency to the core automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS ${CAMITK_CORE_TARGET_LIB_NAME})
+
+ # 2nd COMPONENTS DEPENDENCIES
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION)
+ set(COMPONENTS_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(COMPONENT_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_COMPONENT_EXTENSION})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/components/${COMPONENT_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES}
+ debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/components/${COMPONENT_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${COMPONENT_NEEDED}
+ )
+ else()
+ set(COMPONENT_EXTENSION_LIBRARIES ${COMPONENT_EXTENSION_LIBRARIES} ${COMPONENT_NEEDED})
+ endif()
+ # CMake / CDash dependencies
+ if(PACKAGING_NSIS)
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} component_${COMPONENT_NEEDED})
+ # add the dependency to the component automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS component_${COMPONENT_NEEDED})
+ else()
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} component-${COMPONENT_NEEDED})
+ set(COMPONENTS_DEPENDENCY_LIST ${COMPONENTS_DEPENDENCY_LIST} component-${COMPONENT_NEEDED})
+ # add the dependency to the component automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS component-${COMPONENT_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+ # 3rd ACTIONS DEPENDENCIES
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION)
+ set(ACTIONS_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(ACTION_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_ACTION_EXTENSION})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/actions/${ACTION_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/actions/${ACTION_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES}
+ debug ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/${ACTION_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${ACTION_NEEDED}
+ )
+ else()
+ set(ACTION_EXTENSION_LIBRARIES ${ACTION_EXTENSION_LIBRARIES} ${ACTION_NEEDED})
+ endif()
+ # CMake / CDash dependencies
+ if (PACKAGING_NSIS)
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} action_${ACTION_NEEDED})
+ # add the dependency to the action automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS action_${ACTION_NEEDED})
+ else()
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} action-${ACTION_NEEDED})
+ set(ACTIONS_DEPENDENCY_LIST ${ACTIONS_DEPENDENCY_LIST} action-${ACTION_NEEDED})
+ # add the dependency to the action automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS action-${ACTION_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+ # 4th CEP LIBRARIES DEPENDENCIES
+ if(${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
+ set(CEP_LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
+ foreach(CEP_LIBRARY_NEEDED ${${EXTENSION_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${CEP_LIBRARY_NEEDED}
+ )
+ else()
+ if(PACKAGING_NSIS)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ else()
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ endif()
+ endif()
+ # CMake / CDash dependencies
+ if (PACKAGING_NSIS)
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library_${CEP_LIBRARY_NEEDED})
+ else()
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
+ set(CEP_LIBRARIES_DEPENDENCY_LIST ${CEP_LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library-${CEP_LIBRARY_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+ # 5th DEPENDENCY ON TESTING APPLICATION
+ # Those projects are used to run unitarian test on ACTION / COMPONENT extensions.
+ set(APPLICATIONS_DEPENDENCY_LIST "")
+ if(${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
+ # Add this dependencies for automatically constructing application-testactions components dependencies
+ add_dependencies(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} application-test${TYPE_EXTENSION}s)
+ set(APPLICATIONS_DEPENDENCY_LIST "application-test${TYPE_EXTENSION}s")
+ # add the dependency to the test application automoc target
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS application-test${TYPE_EXTENSION}s)
+ endif()
+
+ if((CEP_NAME STREQUAL "SDK") OR (CEP_NAME STREQUAL "modeling") OR (CEP_NAME STREQUAL "imaging"))
+ # 6th TEST-COMPONENT APPLICATION DEPENDENCY ON THIS COMPONENT
+ if(${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
+ add_dependencies(application-testactions ${COMPONENT_TARGET_NAME})
+ # add this component automoc target to the dependency of the test application
+ set_property(TARGET application-testactions APPEND PROPERTY AUTOGEN_TARGET_DEPENDS ${COMPONENT_TARGET_NAME})
+ endif()
+
+ # 7th TEST-ACTION APPLICATION DEPENDENCY ON ACTION-APPLICATION
+ if(${TYPE_EXTENSION_CMAKE}_TARGET_NAME STREQUAL "action-application")
+ add_dependencies(application-testcomponents action-application)
+ # add this component automoc target to the dependency of the test application
+ set_property(TARGET application-testcomponents APPEND PROPERTY AUTOGEN_TARGET_DEPENDS action-application)
+ endif()
+ endif()
+
+
+ #########################################################################
+ # #
+ # COMPILATION FLAG #
+ # #
+ # * Flags are options to give to the compiler #
+ # * Add user input flags #
+ # * Add platform specific flags #
+ # #
+ #########################################################################
+
+ # USER INPUT DEFINES COMPILER FLAG
+ if(${EXTENSION_NAME_CMAKE}_DEFINES)
+ foreach (FLAG ${${EXTENSION_NAME_CMAKE}_DEFINES})
+ add_definitions(-D${FLAG})
+ endforeach()
+ endif()
+
+ # USER INPUT CUSTOM COMPILER FLAG
+ if(${EXTENSION_NAME_CMAKE}_CXX_FLAGS)
+ foreach (FLAG ${${EXTENSION_NAME_CMAKE}_CXX_FLAGS})
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${FLAG}")
+ endforeach()
+ endif()
+
+ # PLATFORM SPECIFIC COMPILER FLAG
+ # 64bits and other platform with relocation needs -fPIC
+ include(TestCXXAcceptsFlag)
+ check_cxx_accepts_flag(-fPIC FPIC_FLAG_ACCEPTED)
+ # no need to add -fPIC on mingw, otherwise it generates a warning: -fPIC ignored for target (all code is position independent) [enabled by default]
+ # msvc is also accepting the flag, but then produce warning D9002 : ignoring unknown option '-fPIC' cl
+ if(FPIC_FLAG_ACCEPTED AND NOT WIN32)
+ set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} APPEND PROPERTY COMPILE_FLAGS -fPIC)
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINKING #
+ # #
+ # * Linking is the last stage of compilation #
+ # * Indicate what libraries to use for linking the target #
+ # #
+ #########################################################################
+ # LINKING LIBRARIES
+ # Any component or action has to be linked with ${CAMITK_CORE_LIBRARIES} and with all its dependencies
+ target_link_libraries(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} ${CAMITK_CORE_LIBRARIES} ${CAMITK_LIBRARIES} ${COMPONENT_EXTENSION_LIBRARIES} ${ACTION_EXTENSION_LIBRARIES} ${CEP_LIBRARIES} ${CAMITK_ITK_LIBRARIES} ${LIBXML2_LIBRARY} ${OpenCV_LIBRARIES} ${IGSTK_LIBRARIES} ${XERCESC_LIBRARIES} ${GDCM_LIBRARIES} ${EXTERNAL_LIBRARIES})
+
+
+
+ #########################################################################
+ # #
+ # OUTPUT #
+ # #
+ # * Define the output directory (location and name) #
+ # * Define the output name of the library #
+ # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
+ # * Additional Linux .so files information #
+ # #
+ #########################################################################
+
+ # OUTPUT LIBRARY NAME
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ PROPERTIES OUTPUT_NAME ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}
+ )
+
+ # OUTPUT DIRECTORY LOCATION AND NAME
+ # Output directory (all extensions are private)
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ )
+ # Output directory (for dll plateform, this is still the same, extensions are private)
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ )
+ # Output directory (for dll plateform, this is still the same, extensions are private)
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s
+ )
+
+ # OUTPUT LIBRARY NAME MSVC in DEBUG mode
+ if (MSVC)
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
+ endif()
+
+ # ADDITIONAL LINUX .so FILE INFORMATION
+ set(${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES ${${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES}
+ VERSION "${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}"
+ SOVERSION "${CAMITK_VERSION_MAJOR}"
+ )
+ # set the library specific info (SONAME...)
+ set_target_properties(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTIES ${${TYPE_EXTENSION_CMAKE}_LIBRARY_PROPERTIES} LINK_INTERFACE_LIBRARIES "")
+
+ # see http://www.cmake.org/pipermail/cmake/2012-April/049889.html
+ # target properties (outputname and remove soname)
+ # set_property(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} PROPERTY NO_SONAME 1)
+ # in CEP the version patch might not have been set
+ if (NOT CAMITK_VERSION_PATCH)
+ set(CAMITK_VERSION_PATCH 0)
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # INSTALLATION #
+ # #
+ # * When installing the project, header files (.h) and test data are #
+ # copied into a installation folder to determine. #
+ # * Indicate in this section, where to install your project and which #
+ # files to copy into that folder (during local/global installation) #
+ # #
+ #########################################################################
+
+ # FOLDER INSTALLATION
+ # Indicate where to install the action/component
+ install(TARGETS ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ # TODO always use private lib, even for runtime
+ RUNTIME DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
+ LIBRARY DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
+ ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}/${TYPE_EXTENSION}s
+ COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+
+ # HEADERS INSTALLATION
+ # Build target to install provided headers to install (with HEADERS_TO_INSTALL option)
+ if(${EXTENSION_NAME_CMAKE}_HEADERS_TO_INSTALL)
+ export_headers(${${EXTENSION_NAME_CMAKE}_HEADERS_TO_INSTALL} COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} GROUP ${TYPE_EXTENSION}s)
+ endif()
+
+ # Build target to install all header files(with INSTALL_ALL_HEADERS option)
+ if(${EXTENSION_NAME_CMAKE}_INSTALL_ALL_HEADERS)
+ export_headers(${${EXTENSION_NAME_CMAKE}_HEADERS} COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} GROUP ${TYPE_EXTENSION}s)
+ endif()
+
+ # TESTDATA INSTALLATION
+ if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/testdata)
+ # Check test data dir directory
+ if (NOT EXISTS ${CAMITK_BUILD_TESTDATA_DIR})
+ make_directory( ${CAMITK_BUILD_TESTDATA_DIR} )
+ endif()
+
+ # copy the files to test data directory
+ execute_process(COMMAND ${CMAKE_COMMAND} -E copy_directory testdata ${CAMITK_BUILD_TESTDATA_DIR}
+ WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+ )
+
+ # during installation, copy the files to install directory
+ set (TESTDATA_DEST_DIR share/${CAMITK_SHORT_VERSION_STRING}/testdata)
+ install(DIRECTORY testdata/
+ #DESTINATION share/testdata
+ #DESTINATION share/${CAMITK_SHORT_VERSION_STRING}/testdata
+ DESTINATION ${TESTDATA_DEST_DIR}
+ # COMPONENT ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ PATTERN ".svn" EXCLUDE
+ PATTERN "*~" EXCLUDE
+ )
+ endif()
+
+ # CTESTDATA INSTALLATION
+ if (EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/testdata/ctestdata)
+ # Check test data dir directory
+ if (NOT EXISTS ${CAMITK_BUILD_CTESTDATA_DIR})
+ add_custom_command(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_BUILD_CTESTDATA_DIR}
+ COMMENT "Creating build-time share directory for test data ${CAMITK_BUILD_CTESTDATA_DIR}"
+ VERBATIM
+ )
+ endif()
+
+ # At build time, copy the files to test data directory
+ add_custom_command(TARGET ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E copy_directory testdata/ctestdata ${CAMITK_BUILD_CTESTDATA_DIR}
+ COMMENT "Installing build-time test data for ${EXTENSION_NAME}"
+ WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+ VERBATIM
+ )
+
+ # during installation, copy the files to install directory
+ set (CTESTDATA_DEST_DIR share/${CAMITK_SHORT_VERSION_STRING}/testdata/ctestdata)
+ install(DIRECTORY testdata/ctestdata
+ DESTINATION ${CTESTDATA_DEST_DIR}
+ PATTERN ".svn" EXCLUDE
+ PATTERN "*~" EXCLUDE
+ )
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # CDASH SUBPROJECT DESCRIPTION #
+ # #
+ # * Update the XML description of the subprojects dependencies #
+ # for CDash. #
+ # #
+ #########################################################################
+ # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
+ camitk_sub_project_add(${TYPE_EXTENSION_CMAKE} ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} DEPENDENCIES library-camitkcore ${COMPONENTS_DEPENDENCY_LIST} ${ACTIONS_DEPENDENCY_LIST} ${CEP_LIBRARIES_DEPENDENCY_LIST} ${APPLICATIONS_DEPENDENCY_LIST})
+
+
+
+ #########################################################################
+ # #
+ # PACKAGING CATEGORIZATION #
+ # #
+ # * On Windows, when building a package (win32 installer), the #
+ # install shield wizard proposes you to select which component #
+ # to install. #
+ # * Each component to install has a short description following its #
+ # name to understand its role. #
+ # * This section deals with the categorization and the description #
+ # of the component in this installer. #
+ # #
+ #########################################################################
+
+ # WINDOWS INSTALLER CATEGORIZATION
+ if(${EXTENSION_NAME_CMAKE}_CEP_NAME)
+ if (${EXTENSION_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
+ # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
+ cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
+ REQUIRED
+ GROUP SDK
+ )
+
+ else()
+ # Extension is selectable for installation in the wizard of the installer
+ cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
+ GROUP ${${EXTENSION_NAME_CMAKE}_CEP_NAME}
+ )
+ endif()
+ else()
+ # Extension if not categorized for packaging presentation
+ cpack_add_component(${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DISPLAY_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ DESCRIPTION ${${EXTENSION_NAME_CMAKE}_DESCRIPTION}
+ )
+ endif()
+
+
+ #####################################################################################
+ # #
+ # TRANSLATION #
+ # #
+ # * CAMITK_TRANSLATIONS contains the list of language to translate #
+ # the QString to. #
+ # #
+ # * Create the translate.pro file which contains 4 sections: #
+ # - HEADERS: list of .h/.hpp files to look for tr("") QString #
+ # - SOURCES: list of .cpp files to look for tr("") QString #
+ # - FORMS: list of .ui files to look for tr("") QString #
+ # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
+ # to define each .ts file #
+ # #
+ # * Execute lupdate program to update the .ts files with new QString #
+ # found. #
+ # #
+ # * Execute lrelease program to create .qm files (binary equivalent of #
+ # .ts files #
+ # #
+ # * Create translate.qrc which contains the list of .qm files. #
+ # * Create the flags.qrc file which contains the list of .png flags #
+ # images #
+ # #
+ #####################################################################################
+ if(CAMITK_TRANSLATE)
+ if(${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
+ if(${EXTENSION_NAME} STREQUAL "application")
+ camitk_translate(USE_FLAGS
+ EXTRA_LANGUAGE ${${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
+ else()
+ camitk_translate(EXTRA_LANGUAGE ${${EXTENSION_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
+ endif()
+ else()
+ if(${EXTENSION_NAME} STREQUAL "application")
+ camitk_translate(USE_FLAGS)
+ else()
+ camitk_translate()
+ endif()
+ endif()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # CTEST - COMPONENT TESTS DESCRIPTION #
+ # #
+ #########################################################################
+ if( ${EXTENSION_NAME_CMAKE}_COMPONENT_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
+ camitk_init_test( ${${EXTENSION_NAME_CMAKE}_TEST_APPLICATION} )
+ camitk_parse_test_add_separator(EXTENSION_TYPE ${TYPE_EXTENSION} EXTENSION_NAME ${EXTENSION_NAME})
+
+ # Retrieve the current directory name to properly name the test
+ get_directory_name( ${CMAKE_CURRENT_SOURCE_DIR} COMP_DIR_NAME )
+
+ # Retrieve the files in testdata directory - a test will be applied for each of these files
+ get_subdirectoryfiles( ${CMAKE_CURRENT_SOURCE_DIR}/testdata/ctestdata TESTFILES )
+
+ # Different the test level to proceed
+ set( LEVEL0 0 )
+ set( LEVEL1 1 )
+ set( LEVEL2 2 )
+ set( LEVEL3 3 )
+ set( TESTLEVEL ${LEVEL3} )
+
+ # 1st test should pass because application test runs with no arguments - shows usage and exit success
+ camitk_add_test( TEST_SUFFIX "-LEVEL0-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL 0 DESCRIPTION "Launch application testcomponent with no arguments.")
+
+ # According options defined in Cmakelist enable or disable some tests
+ set(TEST_DESCRIPTION "Test opening the component, saving it as a file and compare the saved file with the original one.")
+ if( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL1 )
+ set(TESTLEVEL 0 )
+ set(TEST_DESCRIPTION "Run camitk-config." )
+ elseif( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL2 )
+ set( TESTLEVEL ${LEVEL1} )
+ set(TEST_DESCRIPTION "Test opening the component.")
+ elseif( ${EXTENSION_NAME_CMAKE}_DISABLE_TESTLEVEL3 )
+ set( TESTLEVEL ${LEVEL2} )
+ set(TEST_DESCRIPTION "Test opening the component and saving it as a file.")
+ endif()
+
+ set( LEVELORIGIN ${TESTLEVEL} ) #store the test level value in a const variable
+
+ foreach( COMPONENT_TESTDATA_FILE ${TESTFILES} )
+ # Give the file name (full path cut)
+ get_directory_name( ${COMPONENT_TESTDATA_FILE} DATA_FILE )
+
+ # Test procedure: Open an extension and a component- save it - Compare saved file to original file(level3)
+ if( ${TESTLEVEL} EQUAL ${LEVEL3} )
+ if(MSVC)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll -l ${TESTLEVEL}"
+ PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE}
+ TEST_SUFFIX "-LEVEL${TESTLEVEL}-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(APPLE)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib -l ${TESTLEVEL}"
+ PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE}
+ TEST_SUFFIX "-LEVEL${TESTLEVEL}-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(UNIX)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so -l ${TESTLEVEL}"
+ PASS_FILE_OUTPUT ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE}
+ TEST_SUFFIX "-LEVEL${TESTLEVEL}-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ endif()
+ camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL ${TESTLEVEL} DESCRIPTION ${TEST_DESCRIPTION})
+ MATH(EXPR TESTLEVEL "${TESTLEVEL}-1") #Decrease the test level to proceed less arduous tests
+ endif()
+
+ # Test procedure: Open an extension and a component(level1) - save it(level2)
+ while( ${TESTLEVEL} GREATER 0)
+ if(MSVC)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll -l ${TESTLEVEL}" TEST_SUFFIX [LEVEL${TESTLEVEL}]
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(APPLE)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib -l ${TESTLEVEL}"
+ TEST_SUFFIX "-LEVEL${TESTLEVEL}-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(UNIX)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${DATA_FILE} -c ${CAMITK_BUILD_PRIVATE_LIB_DIR}/${TYPE_EXTENSION}s/lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so -l ${TESTLEVEL}"
+ TEST_SUFFIX "-LEVEL${TESTLEVEL}-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ endif()
+ camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL ${TESTLEVEL} DESCRIPTION ${TEST_DESCRIPTION})
+ MATH(EXPR TESTLEVEL "${TESTLEVEL}-1")# Decrease the test level to proceed less arduous tests
+ endwhile()
+ set( TESTLEVEL ${LEVELORIGIN} )
+ endforeach()
+
+ #########################################################################
+ # #
+ # CTEST - ACTION TESTS DESCRIPTION #
+ # #
+ #########################################################################
+ elseif( ${EXTENSION_NAME_CMAKE}_ACTION_EXTENSION AND ${EXTENSION_NAME_CMAKE}_TEST_APPLICATION AND NOT PACKAGING_NSIS)
+ camitk_init_test( ${${EXTENSION_NAME_CMAKE}_TEST_APPLICATION} )
+ camitk_parse_test_add_separator(EXTENSION_TYPE ${TYPE_EXTENSION} EXTENSION_NAME ${EXTENSION_NAME})
+
+ # Retrieve the current directory name to properly name the test
+ get_directory_name( ${CMAKE_CURRENT_SOURCE_DIR} COMP_DIR_NAME )
+
+ # Test should pass because application test runs with no arguments - shows usage and exit success
+ camitk_add_test( TEST_SUFFIX "-LEVEL0-" PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME} )
+ camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL 0 DESCRIPTION "Launch application testaction with no arguments.")
+
+ #get the names of actions .dlls in lib directory
+ get_subdirectoryfiles( ${CAMITK_BUILD_PRIVATE_LIB_DIR}/actions/ ACTIONSDLLS )
+
+ foreach( ACTION_TESTDATA_FILE ${${EXTENSION_NAME_CMAKE}_TEST_FILES} )
+ # Next line is only useful macro debug => comment from now
+ # message( STATUS "Action extension: " ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME} " Test file: " ${ACTION_TESTDATA_FILE} )
+
+ if( NOT ( ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME} MATCHES "application" ) )# We do not apply tests on actions like (close, save, save as)
+ # Test procedure: Open a file - load an action extension - Apply an action on the component wrapping the file
+ if(MSVC)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a ${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}${CAMITK_DEBUG_POSTFIX}.dll"
+ TEST_SUFFIX "-LEVEL1-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(APPLE)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.dylib"
+ TEST_SUFFIX "-LEVEL1-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ elseif(UNIX)
+ camitk_add_test( EXECUTABLE_ARGS "-i ${CAMITK_BUILD_TESTDATA_DIR}/ctestdata/${ACTION_TESTDATA_FILE} -a lib${${TYPE_EXTENSION_CMAKE}_OUTPUT_NAME}.so"
+ TEST_SUFFIX "-LEVEL1-"
+ PROJECT_NAME ${${TYPE_EXTENSION_CMAKE}_TARGET_NAME}
+ )
+ endif()
+ camitk_parse_test_add(NAME ${CAMITK_TEST_NAME} LEVEL 1 DESCRIPTION "Open a file, load the action and apply it on the component.")
+ endif()
+ endforeach()
+ endif()
+ endif() # endif(${TYPE_EXTENSION_CMAKE}_${EXTENSION_NAME_CMAKE})
+
+endmacro()
+
+# Old macro to configure a new action to the framework
+# Use camitk_extension macro instead
+# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
+macro(action_extension)
+ message(WARNING "Deprecated macro action_extension detected : please use camitk_extension(ACTION_EXTENSION ...) instead.")
+ camitk_extension(ACTION_EXTENSION ${ARGN})
+endmacro()
+
+# Old macro to configure a new component to the framework
+# Use camitk_extension macro instead
+# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
+macro(component_extension)
+ message(WARNING "Deprecated macro component_extension detected : please use camitk_extension(COMPONENT_EXTENSION ...) instead.")
+ camitk_extension(COMPONENT_EXTENSION ${ARGN})
+endmacro()
+
+# TODO write a viewer_extension macro in CamiTK
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKExtensionProject.cmake b/sdk/cmake/modules/macros/camitk/CamiTKExtensionProject.cmake
new file mode 100644
index 0000000..e54fd3d
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKExtensionProject.cmake
@@ -0,0 +1,150 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! macro camitk_extension_project creates an optional (disabled by default) CEP (CamiTK Extension Project)
+#! subdirectory the build.
+#!
+#! Usage:
+#! \code
+#! camitk_extension_project(CONTACT
+#! [ENABLED]
+#! [NAME cepName]
+#! [DESCRIPTION longDescription]
+#! [DEFAULT_APPLICATION exeName]
+#! [NEEDS_CEP cep1 cep2...]
+#! [LICENSE licenseName]
+#! )
+#! \endcode
+#!
+#! \param CONTACT Mandatory, this is the person(s) to contact to get more information about the CEP
+#! \param ENABLED If used, this CEP is forced by default (otherwise the user as to tick the option
+#! in CMake GUI or defined a -DCEP_<cepName>:BOOL=TRUE on the command line
+#! \param NAME By default the name of a CEP is given automatically by the name of the top level source directory
+#! If you specify a name here, the directory name will be ignored
+#! \param DESCRIPTION A (not so) small description of this CEP (objective, content, implementation information)
+#! \param DEFAULT_APPLICATION The default application to run (for MSVC launchers), default is camitk-imp
+#! \param NEEDS_CEP (TODO) Dependencies to other CEP
+#! \param LICENSE The name of the license for this CEP, default is LGPL-v3
+macro(camitk_extension_project)
+
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} CEP_DIR_NAME)
+
+ parse_arguments(${CEP_DIR_NAME}_CMAKE
+ "NEEDS_CEP;DEFAULT_APPLICATION;DESCRIPTION;CONTACT;NAME;LICENSE" # possible lists
+ "ENABLED" # possible options
+ ${ARGN}
+ )
+
+ # get the proper name
+ if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_NAME)
+ set(CEP_NAME ${CEP_DIR_NAME})
+ else()
+ set(CEP_NAME ${${CEP_DIR_NAME}_CMAKE_NAME})
+ endif()
+ string(TOUPPER ${CEP_NAME} CEP_NAME_CMAKE)
+
+ # if it is the first cmake run, create the internal variable with a correct initial value (false is default)
+ if(NOT CEP_${CEP_NAME_CMAKE}_INTERNAL)
+ # add option to enable/disable this CEP
+ if(${CEP_DIR_NAME}_CMAKE_ENABLED)
+ set(CEP_${CEP_NAME_CMAKE}_ENABLED TRUE)
+ else()
+ set(CEP_${CEP_NAME_CMAKE}_ENABLED FALSE)
+ endif()
+ set(CEP_${CEP_NAME_CMAKE} ${CEP_${CEP_NAME_CMAKE}_ENABLED} CACHE BOOL "Build CEP ${CEP_NAME}")
+ set(CEP_${CEP_NAME_CMAKE}_INTERNAL TRUE CACHE INTERNAL "Is variable CAMITK_CEP_${CEP_NAME_CMAKE} already created?")
+ endif()
+
+ if(CEP_${CEP_NAME_CMAKE})
+ message(STATUS "Building CEP ${CEP_NAME}")
+
+ project(${CEP_NAME})
+
+ if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_CONTACT)
+ message(FATAL_ERROR "In camitk_extension_project(...) for CEP \"${CEP_NAME}\": CONTACT argument is mandatory\n Should give the email address of the person(s) to contact for more information about the CEP \"${CEP_NAME}\"")
+ endif()
+
+ if(NOT DEFINED ${CEP_DIR_NAME}_CMAKE_LICENSE)
+ set(${CEP_NAME}_LICENSE "LGPL-v3")
+ else()
+ set(${CEP_NAME}_LICENSE ${${CEP_DIR_NAME}_CMAKE_LICENSE})
+ endif()
+
+ # update module path
+ set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_CURRENT_SOURCE_DIR})
+
+ # init cep sub project
+ camitk_sub_project_init()
+
+ # packaging macro must be called before parsing extensions CMakeList files.
+ camitk_cep_packaging(NAME ${CEP_NAME}
+ CONTACT ${${CEP_DIR_NAME}_CMAKE_CONTACT}
+ DESCRIPTION ${${CEP_DIR_NAME}_CMAKE_DESCRIPTION}
+ LICENSE ${${CEP_NAME}_LICENSE}
+ )
+
+ # add all subprojects
+ camitk_add_subdirectory(libraries)
+ camitk_add_subdirectory(components)
+ camitk_add_subdirectory(actions)
+ camitk_add_subdirectory(viewers)
+ camitk_add_subdirectory(applications)
+
+ # CEP packaging (only works if this is a stand-alone CEP
+ camitk_sub_project_validate()
+
+ # For Microsoft Visual C++, sets the default application for the "ALL_BUILD" project
+ # (i.e. launches imp when we you click on "Debug" or "Start Without Debugging" button on Visual)
+ # In addition, but not the least, sets the environment to the debug dll directory for VTK (and ITK)
+ # to solve the dll incompatibility between debug and relase version of QVTK.dll and ITKCommon.dll
+ # is there a specifi application to run by default
+ if(${CEP_NAME_CMAKE}_CMAKE_DEFAULT_APPLICATION)
+ set(CEP_DEFAULT_APPLICATION ${${CEP_NAME_CMAKE}_CMAKE_DEFAULT_APPLICATION})
+ else()
+ set(CEP_DEFAULT_APPLICATION "camitk-imp")
+ endif()
+
+ # if this is a single CEP, provides the installation facilities
+ # otherwise, just add include(CamiTKInstall) to get the installation facilities
+ if (NOT CAMITK_EXTENSION_PROJECT_SET)
+ #-- camitk_global_install == install in CAMITK_DIR
+ if (CAMITK_SDK_BUILD)
+ # if the SDK is currently being build => install in CMAKE_INSTALL_PREFIX
+ add_custom_target(${CEP_NAME}_global_install
+ # Second cmake to install
+ COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
+ COMMENT "Global Installation in ${CMAKE_INSTALL_PREFIX}"
+ )
+
+ else()
+ # this is called from a normal CEP build => install in CAMITK_DIR
+ add_custom_target(${CEP_NAME}_global_install
+ # First cmake to redefine install prefix
+ COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX:PATH=${CAMITK_DIR} ${CMAKE_BINARY_DIR}
+ # Second cmake to install
+ COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
+ COMMENT "Global Installation in ${CAMITK_DIR}"
+ )
+ endif()
+
+ # camitk_local_install == install in User Config directory
+ add_custom_target(${CEP_NAME}_local_install
+ # First cmake to redefine install prefix
+ COMMAND ${CMAKE_COMMAND} -DCMAKE_INSTALL_PREFIX:PATH=${CAMITK_USER_DIR} ${CMAKE_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR} --target install --config ${CMAKE_CFG_INTDIR}
+ COMMENT "Local Installation in ${CAMITK_USER_DIR}"
+ )
+ endif()
+
+ # Add an update_translate targete to configure all the .qrc files for the different extensions of this CEP on demand.
+ # .qrc files consider up to date .ts resources files for translation
+ add_custom_target(${CEP_NAME}_updatetranslate
+ COMMAND ${CMAKE_COMMAND} -E echo "Updating translation for ${CEP_NAME}"
+ COMMAND ${CMAKE_COMMAND} -DCAMITK_TRANSLATE=TRUE ${CMAKE_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} -DCAMITK_TRANSLATE=FALSE ${CMAKE_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} -E echo "Translation updated for ${CEP_NAME}"
+ )
+
+
+ endif()
+endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKInstallAllHeaders.cmake b/sdk/cmake/modules/macros/camitk/CamiTKInstallAllHeaders.cmake
new file mode 100644
index 0000000..7f187b7
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKInstallAllHeaders.cmake
@@ -0,0 +1,123 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! camitk_install_all_headers is a macro that install all header files of a project at build and install time
+#!
+#! Duplicate headers installation:
+#! - one is used at compiled time and puts everything in
+#! ${CMAKE_BINARY_DIR}/include/${CAMITK_SHORT_VERSION_STRING}/${GroupName}/${ComponentName}/...
+#! - the other one is used at installation time and puts everything in
+#! ${CMAKE_INSTALL_PREFIX}/include/${CAMITK_SHORT_VERSION_STRING}/${GroupName}/${ComponentName}/...
+#!
+#! This macro keeps header files directories tree structure at installation. In other words, if your extension
+#! has its header files located in subdirectories, this tree structure will be kept the same at installation.
+#!
+#! Usage:
+#! \code
+#! camitk_install_all_headers( COMPONENT ComponentName
+#! [GROUP GroupName]
+#! )
+#! \endcode
+#!
+#! \param COMPONENT (required) Name of the component to use. This is also the include subdirectory name
+#! used for copying the file
+#! \param GROUP (optional) Name of the group this install should be using group will be
+#! prepend to the component name. This is either actions, components or libraries.
+#!
+#! Example invocation:
+#!
+#! \code
+#!
+#! #--------------
+#! # installation
+#! #--------------
+#! camitk_install_headers( COMPONENT ${MYPROJECT_NAME}
+#! GROUP libraries
+#! )
+#!
+#! Here, in this example, we will install all the header files, in the ${CAMITK_INCLUDE_DIR}/include/libraries/${MYPROJECT_NAME} directories (at build and installation times)
+#! If my header files are located in some subdirectories, this structure will be kept the same at build and installation times.
+#!
+#! \endcode
+macro(camitk_install_all_headers)
+
+ parse_arguments(CAMITK_INSTALL_ALL_HEADERS
+ "COMPONENT;GROUP;" # possible lists
+ "" # no possible options
+ ${ARGN}
+ )
+
+ # The base include directories
+ set(CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR ${CMAKE_BINARY_DIR}/include/${CAMITK_SHORT_VERSION_STRING})
+ set(CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR include/${CAMITK_SHORT_VERSION_STRING})
+
+ # Get action, component or library name without its prefix
+ set(CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME ${CAMITK_INSTALL_ALL_HEADERS_COMPONENT})
+ string(REGEX REPLACE "^component-|^component_|^action-|^action_|^library_|^library-" "" CAMITK_INSTALL_ALL_HEADERS_COMPONENT ${CAMITK_INSTALL_ALL_HEADERS_COMPONENT})
+
+ # Check group directory
+ if(CAMITK_INSTALL_ALL_HEADERS_GROUP)
+ # Create group directory if not already existing
+ if (NOT EXISTS ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_GROUP} AND NOT CAMITK_INSTALL_ALL_HEADERS_DIRECTORY)
+ add_custom_command( TARGET ${CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_GROUP}
+ COMMENT "Creating build-time group include dir ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_GROUP}"
+ VERBATIM
+ )
+ endif()
+ # Update base dirs
+ set(CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_GROUP})
+ set(CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR ${CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_GROUP})
+ endif()
+
+ # Create component directory if not already existing
+ if (NOT EXISTS ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_COMPONENT} AND NOT CAMITK_INSTALL_ALL_HEADERS_DIRECTORY)
+ add_custom_command( TARGET ${CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_COMPONENT}
+ COMMENT "Creating build-time include dir ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_COMPONENT}"
+ VERBATIM
+ )
+ endif()
+ # Update base dirs
+ set(CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_COMPONENT})
+ set(CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR ${CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR}/${CAMITK_INSTALL_ALL_HEADERS_COMPONENT})
+
+ # Build time installation
+ file(GLOB_RECURSE HEADERS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR}/ *.h)
+ foreach(HEADER ${HEADERS})
+ # Get the subdirectory name of the header
+ string(REGEX MATCH ".*/" SUBDIR ${HEADER})
+
+ # Create subdirectory if not already existing
+ if(NOT EXISTS ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${SUBDIR} AND NOT CAMITK_INSTALL_ALL_HEADERS_${SUBDIR})
+ # Create directory at build time
+ add_custom_command( TARGET ${CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${SUBDIR}
+ COMMENT "Creating build-time include dir ${CAMITK_INSTALL_ALL_HEADERS_COMPONENT}/${SUBDIR}"
+ VERBATIM
+ )
+ set(CAMITK_INSTALL_ALL_HEADERS_${SUBDIR} "CREATED") # To avoid creating the directory another time
+ endif()
+
+ # Install header at build time
+ add_custom_command( TARGET ${CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME}
+ POST_BUILD
+ COMMAND ${CMAKE_COMMAND} -E copy_if_different ${CMAKE_CURRENT_SOURCE_DIR}/${HEADER} ${CAMITK_INSTALL_ALL_HEADERS_BUILD_BASE_DIR}/${SUBDIR}
+ COMMENT "Installing build-time header ${CAMITK_INSTALL_ALL_HEADERS_COMPONENT}/${HEADER}"
+ VERBATIM
+ )
+ endforeach()
+
+ # Install time, copy all the .h directories structure
+ install( DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+ COMPONENT ${CAMITK_INSTALL_ALL_HEADERS_TARGET_NAME}
+ DESTINATION ${CAMITK_INSTALL_ALL_HEADERS_INSTALL_RELATIVE_DIR}
+ FILES_MATCHING
+ PATTERN "*.h"
+ )
+
+endmacro()
+
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKLibrary.cmake b/sdk/cmake/modules/macros/camitk/CamiTKLibrary.cmake
new file mode 100644
index 0000000..3cacce6
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKLibrary.cmake
@@ -0,0 +1,672 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! macro camitk_library simplifies the declaration of a library inside CamiTK
+#! and is to be used for all inner project libraries
+#!
+#! The name of the CEP library is deduced from the name of the directory, unless LIBNAME is provided
+#!
+#! If the library is compiled as shared, it adds the needed library properties
+#! If it needs relocation flag fPIC (on some plateforms), this macro should determine
+#! if this is the case and specify this flag
+#!
+#! usage:
+#! \code
+#! camitk_library(
+#! SHARED|STATIC
+#! SOURCES source1.cpp source1.h...
+#! [LIBNAME libname]
+#! [PUBLIC]
+#! [NEEDS_CEP_LIBRARIES lib1 lib2...]
+#! [NEEDS_ITK]
+#! [NEEDS_LIBXML2]
+#! [NEEDS_XERCESC]
+#! [NEEDS_XSD]
+#! [NEEDS_QT]
+#! [DEFINES flag1 flag2 ...]
+#! [EXTERNAL_LIBRARIES lib1 lib2... ]
+#! [INCLUDE_DIRECTORIES dir1 dir2...]
+#! [LINK_DIRECTORIES dir1 dir2...]
+#! [HEADERS_TO_INSTALL]
+#! [CEP_NAME]
+#! [DESCRIPTION]
+#! [EXTRA_TRANSLATE_LANGUAGE]
+#! [CXX_FLAGS flag1 flag2 ...]
+#!
+#! )
+#! \endcode
+#!
+#! \param SHARED optional, if the library should be compiled as shared
+#! \param SOURCES all sources to be included in the library
+#! \param INCLUDE_DIRECTORIES all needed include directories (${CMAKE_CURRENT_SOURCE_DIR} and ${CMAKE_CURRENT_BINARY_DIR} are automatically added)
+#! \param EXTERNAL_LIBRARIES all the libraries to be used during the link (shared or static)
+#! \param NEEDS_CEP_LIBRARIES all the libraries to be used during the link (shared or static)
+#! \param NEEDS_ITK add this if your component needs ITK.
+#! \param NEEDS_LIBXML2 add this if the CEP library needs libxml2
+#! \param NEEDS_XERCESC add this if your action / component needs XercesC library
+#! \param NEEDS_XSD add this if your action needs Codesynthesis xsd cxx (xml schema compiler)
+#! \param NEEDS_QT add this if your library depends on Qt 5.x
+#! \param LIBNAME force the CEP library name to be different from the directory it is in
+#! \param LINK_DIRECTORIES additional directories to use in link_directories(...)
+#! \param DEFINES list of define flags to add at compilation time
+#! \param PUBLIC The library is a public library that has to be loaded directly by the operating system.
+#! It is generally only needed for SDK library. A public library should not be installed in the
+#! lib/${CAMITK_SHORT_VERSION_STRING} but directly in lib/ (on Unix/MacOS) or bin/ (on windows)
+#! \param HEADERS_TO_INSTALL list of header files to install. File would be copied at build and installation time
+#! in the ./include/libraries/library-name subdirectory.
+#! Note that, if no header files are provided, all header files (*.h) will be install.
+#! \param CEP_NAME specify the CEP_NAME, which is used to categorized the extension for packaging purpose
+#! No CEP_NAME provided will result in default categorization (generic extension).
+#! \param DESCRIPTION Simple description of the extension. Used for packaging presentation for instance.
+#! \param EXTRA_TRANSLATE_LANGUAGE Additionnal extra language to translate the application
+#! \param CXX_FLAGS = list of compiler flags to add (such as warning levels (-Wall ...)).
+
+macro(camitk_library)
+
+ #########################################################################
+ # #
+ # ARGUMENTS PARSING #
+ # #
+ # * Use a macro to create the CMAKE variables according to the #
+ # provided options as input. #
+ # #
+ #########################################################################
+
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} DEFAULT_LIBRARY_NAME)
+
+ parse_arguments(${DEFAULT_LIBRARY_NAME_CMAKE}
+ "SOURCES;NEEDS_CEP_LIBRARIES;EXTERNAL_LIBRARIES;INCLUDE_DIRECTORIES;LIBNAME;DEFINES;LINK_DIRECTORIES;HEADERS_TO_INSTALL;CEP_NAME;DESCRIPTION;EXTRA_TRANSLATE_LANGUAGE;CXX_FLAGS" # possible lists
+ "SHARED;STATIC;NEEDS_ITK;NEEDS_LIBXML2;NEEDS_XERCESC;NEEDS_XSD;NEEDS_QT;PUBLIC" # possible options
+ ${ARGN}
+ )
+
+
+ #########################################################################
+ # #
+ # Consider moc sources files #
+ # #
+ # * if you use Q_OBJECT in your classes #
+ # #
+ #########################################################################
+ file(GLOB_RECURSE MOC_SRCS ${CMAKE_CURRENT_BINARY_DIR}/moc_*.cxx)
+ set(${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES ${${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES} ${MOC_SRCS})
+
+
+ #########################################################################
+ # #
+ # CREATE CMAKE VARIABLES #
+ # #
+ # * Create required and useful CMake variables for the macro #
+ # #
+ #########################################################################
+
+ # TARGET NAME
+ # The target name is composed of the following: library-name
+ # * library is the suffix
+ # * name is deduced from the input folder containing the calling CMakeLists.txt file of the extension.
+ # "-" is replaced by "_" if configuring for packaging with NSIS, the program to create a Windows installer.
+ if (PACKAGING_NSIS)
+ if ("${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME}" STREQUAL "")
+ set(LIBRARY_TARGET_NAME library_${DEFAULT_LIBRARY_NAME})
+ else()
+ set(LIBRARY_TARGET_NAME library_${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME})
+ endif()
+ else()
+ if ("${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME}" STREQUAL "")
+ set(LIBRARY_TARGET_NAME library-${DEFAULT_LIBRARY_NAME})
+ else()
+ set(LIBRARY_TARGET_NAME library-${${DEFAULT_LIBRARY_NAME_CMAKE}_LIBNAME})
+ endif()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # INCLUDE DIRECTORIES #
+ # #
+ # * Include library directories where to look for header files #
+ # * Include also additional user provided directories #
+ # * These directories are used for compilation step #
+ # #
+ #########################################################################
+
+ # BASIC DIRECTORIES
+ include_directories(${CAMITK_INCLUDE_DIRECTORIES})
+ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
+ include_directories(${CMAKE_CURRENT_BINARY_DIR})
+
+ # USER PROVIDED ADDITIONAL DIRECTORIEs
+ include_directories(${${DEFAULT_LIBRARY_NAME_CMAKE}_INCLUDE_DIRECTORIES})
+
+
+
+ #########################################################################
+ # #
+ # GROUP RESOURCES #
+ # #
+ # * On Windows, Visual Studio, group .moc and .ui files #
+ # in subdirectories #
+ # #
+ #########################################################################
+ if(MSVC)
+ source_group("Source Files\\Moc Files" "moc_*")
+ source_group("Source Files\\CLI Files" "CommandLineOptions.*")
+ source_group("Header Files\\UI Files" "ui_*.h")
+ source_group("Source Files\\Resources Files" "qrc_*")
+ source_group("Source Files\\Resources Files" "*.qrc")
+ source_group("UI Files" "*.ui")
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # ADDITIONAL KNOWN LIBRARY DEPENDENCIES #
+ # #
+ # * Look for specific library needed #
+ # * Specific libraries are specified as option with the #
+ # NEEDS_LIBRARY syntax (see macro syntax for more options) #
+ # * Backward compatibility : Warn user if using old NEEDS_TOOL syntax #
+ # #
+ #########################################################################
+
+ # Looking for ITK
+ set(ITK_LIBRARIES "")
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_ITK)
+ find_package(ITK REQUIRED)
+ if(ITK_FOUND)
+ include(${ITK_USE_FILE})
+ set(ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}) #ITK_VERSION is not always set
+ set(CAMITK_ITK_VERSION ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR})
+ message(STATUS "${${DEFAULT_LIBRARY_NAME_CMAKE}_TARGET_NAME}: Found ITK version ${ITK_VERSION}")
+
+ if ((${ITK_VERSION} VERSION_GREATER "4") AND (${ITK_VERSION} VERSION_LESS "5")) # ITK 4.9 on Windows, maybe a lesser version for Linux.
+ if(MSVC)
+ set(ITK_DIR ${ITK_DIR}/../..)
+ # Construct list of ITK libraries for linking = CAMITK_ITK_LIBRARIES
+ foreach(ITK_LIBRARY ${ITK_LIBRARIES})
+ string(SUBSTRING ${ITK_LIBRARY} 0 3 ${ITK_LIBRARY}_PREFIX)
+ # Some libraries have not the expected 'itk' prefix. Add it then
+ if((NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "itk") AND (NOT ${${ITK_LIBRARY}_PREFIX} STREQUAL "ITK"))
+ set(ITK_LIBRARY itk${ITK_LIBRARY})
+ endif()
+ set(CAMITK_ITK_LIBRARIES ${CAMITK_ITK_LIBRARIES} debug ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}${CAMITK_DEBUG_POSTFIX}.lib optimized ${ITK_DIR}/${ITK_LIBRARY}-${CAMITK_ITK_VERSION}.lib)
+ endforeach()
+ elseif(UNIX)
+ set(CAMITK_ITK_LIBRARIES ${ITK_LIBRARIES})
+ elseif(APPLE)
+ message(WARNING "CamiTKExtension.cmake: ITK LIBRARY NOT SET FOR APPLE")
+ endif()
+ else()
+ message(FATAL_ERROR "Wrong version of ITK : ${ITK_VERSION}. Required is at least 4.x to 4.9")
+ endif()
+ else()
+ message(FATAL_ERROR "ITK not found but required for ${${DEFAULT_LIBRARY_NAME_CMAKE}_TARGET_NAME}")
+ endif()
+ endif()
+
+ # LIBXML2
+ set(LIBXML2_LIBRARY "")
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_LIBXML2)
+ # LibXml2 is required
+ find_package(Xml2)
+ if (LIBXML2_FOUND)
+ add_definitions(${LIBXML2_DEFINITIONS})
+ include_directories(${LIBXML2_INCLUDE_DIR})
+ set(LIBXML2_LIBRARY ${LIBXML2_LIBRARIES})
+ else()
+ # most probably win32 or crosscompiling
+ message(WARNING "${LIBRARY_TARGET_NAME}: libxml2 required")
+ endif()
+ endif()
+
+ # XERCES-C
+ set(XERCESC_LIBRARIES)
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_XERCESC)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${DEFAULT_LIBRARY_NAME}: xerces-c required. Please provide Xerces-C path.")
+ endif()
+ endif()
+
+ # XSD
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_XSD)
+ # XercesC is required
+ find_package(XercesC REQUIRED)
+ if (XERCESC_FOUND)
+ include_directories(${XERCESC_INCLUDE_DIR})
+ set(XERCESC_LIBRARIES ${XERCESC_LIBRARY})
+ find_package(XSD REQUIRED)
+ include_directories(${XSD_INCLUDE_DIR})
+ else()
+ # most probably win32 or crosscompiling
+ message(FATAL_ERROR "${LIBRARY_TARGET_NAME}: xerces-c required because of XSD cxx, please set XERCESC_INCLUDE_DIR")
+ endif()
+ endif()
+
+ # QT
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_QT)
+ # Instruct CMake to run moc automatically when needed.
+ set(CMAKE_AUTOMOC ON)
+
+ set(QT_COMPONENTS Core Gui Xml XmlPatterns Widgets Help UiTools OpenGL OpenGLExtensions)
+ find_package(Qt5 COMPONENTS ${QT_COMPONENTS} REQUIRED)
+ if (Qt5_FOUND)
+ # cmake_policy(SET CMP0020 NEW) # policy for Qt core linking to qtmain.lib
+ message(STATUS "${LIBRARY_TARGET_NAME}: found Qt ${Qt5_VERSION}.")
+ set(QT_INCLUDE_DIRS ${Qt5Widgets_INCLUDE_DIRS} ${Qt5Core_INCLUDE_DIRS} ${Qt5Gui_INCLUDE_DIRS} ${Qt5Xml_INCLUDE_DIRS} ${Qt5XmlPatterns_INCLUDE_DIRS} ${Qt5Declarative_INCLUDE_DIRS} ${Qt5Help_INCLUDE_DIRS} ${Qt5UiTools_INCLUDE_DIRS} ${Qt5OpenGL_INCLUDE_DIRS} ${Qt5OpenGLExtensions_INCLUDE_DIRS})
+ include_directories(${QT_INCLUDE_DIRS})
+ else()
+ message(SEND_ERROR "${LIBRARY_TARGET_NAME}: Failed to find Qt 5.x. This is needed by ${LIBRARY_TARGET_NAME}.")
+ endif()
+ endif()
+
+ # EXTERNAL DEPENDENCIES
+ set(LINKER_EXTERNAL_LIBRARIES)
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_EXTERNAL_LIBRARIES)
+ foreach(EXTERNAL_LIBRARY ${${DEFAULT_LIBRARY_NAME_CMAKE}_EXTERNAL_LIBRARIES})
+ if (MSVC)
+ set(LINKER_EXTERNAL_LIBRARIES ${LINKER_EXTERNAL_LIBRARIES}
+ debug ${EXTERNAL_LIBRARY}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${EXTERNAL_LIBRARY}
+ )
+ message(STATUS "LINKER_EXTERNAL_LIBRARIES = ${LINKER_EXTERNAL_LIBRARIES}")
+ else()
+ set(LINKER_EXTERNAL_LIBRARIES ${LINKER_EXTERNAL_LIBRARIES} ${EXTERNAL_LIBRARY})
+ endif()
+ endforeach()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINK DIRECTORIES #
+ # #
+ # * Link directories are used to indicate the compiler where #
+ # to look for folder containing libraries to link with. #
+ # * Additional link directories provided by the user #
+ # #
+ #########################################################################
+ # CAMITK BASIC LIB DIRECTORIES
+ link_directories(${CAMITK_LINK_DIRECTORIES})
+
+ # ADDITIONAL LINK DIRECTORIES
+ if (NOT "${${DEFAULT_LIBRARY_NAME_CMAKE}_LINK_DIRECTORIES}" STREQUAL "")
+ link_directories(${${DEFAULT_LIBRARY_NAME_CMAKE}_LINK_DIRECTORIES})
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # TARGET COMPILATION DEFINITION #
+ # #
+ # * Additional sources files to consider at compilation (.cpp) #
+ # * CMake project target definition depending on library type #
+ # public / private #
+ # #
+ #########################################################################
+ # CMAKE TARGET DEFINITION DEPENDENDING ON THE LIBRARY TYPE (SHARED or STATIC)
+ if (${DEFAULT_LIBRARY_NAME_CMAKE}_SHARED) # shared library
+ message(STATUS "Building shared library: ${LIBRARY_TARGET_NAME}")
+ add_library(${LIBRARY_TARGET_NAME} SHARED ${${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES})
+ # prepare the library specific info (SONAME...)
+ set(${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES ${${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES}
+ VERSION "${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}"
+ SOVERSION "${CAMITK_VERSION_MAJOR}"
+ )
+ #
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ${${LIBRARY_TARGET_NAME}_LIBRARY_PROPERTIES} LINK_INTERFACE_LIBRARIES "")
+ elseif (${DEFAULT_LIBRARY_NAME_CMAKE}_STATIC) # static library
+ message(STATUS "Building static library: ${LIBRARY_TARGET_NAME}")
+ add_library(${LIBRARY_TARGET_NAME} STATIC ${${DEFAULT_LIBRARY_NAME_CMAKE}_SOURCES})
+ else()
+ message(FATAL_ERROR "In adding static library ${LIBRARY_TARGET_NAME}.\n Please specify the library type: SHARED or STATIC")
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # QT LINKING LIBRARIES #
+ # #
+ # * Set at linking the Qt5 libraries #
+ # #
+ #########################################################################
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_QT)
+ qt5_use_modules(${LIBRARY_TARGET_NAME} ${QT_COMPONENTS})
+ endif()
+
+
+
+
+ #########################################################################
+ # #
+ # CAMITK LIBRARIES DEPENDENCIES #
+ # #
+ # * Add in this section library dependencies to other camitk libraies #
+ # to keep a correct build order (NEEDS_CEP_LIBRARIES). #
+ # #
+ #########################################################################
+
+ # CEP LIBRARIES DEPENDENCIES
+ set(CEP_LIBRARIES)
+ set(LIBRARIES_DEPENDENCY_LIST "") #use for generating the project.xml file
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_CEP_LIBRARIES)
+ foreach(CEP_LIBRARY_NEEDED ${${DEFAULT_LIBRARY_NAME_CMAKE}_NEEDS_CEP_LIBRARIES})
+ # include directories from build, camitk (local or global install).
+ include_directories(${CAMITK_BUILD_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ include_directories(${CAMITK_INCLUDE_DIR}/libraries/${CEP_LIBRARY_NEEDED})
+ # file dependency
+ if (MSVC)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} debug ${CEP_LIBRARY_NEEDED}${CAMITK_DEBUG_POSTFIX}.lib
+ optimized ${CEP_LIBRARY_NEEDED}
+ )
+ else()
+ if(PACKAGING_NSIS)
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ else()
+ set(CEP_LIBRARIES ${CEP_LIBRARIES} ${CEP_LIBRARY_NEEDED})
+ endif()
+ endif()
+ # CMake / CDash dependencies
+ if(PACKAGING_NSIS)
+ add_dependencies(${LIBRARY_TARGET_NAME} library_${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${LIBRARY_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library_${CEP_LIBRARY_NEEDED})
+ else()
+ add_dependencies(${LIBRARY_TARGET_NAME} library-${CEP_LIBRARY_NEEDED})
+ set(LIBRARIES_DEPENDENCY_LIST ${LIBRARIES_DEPENDENCY_LIST} library-${CEP_LIBRARY_NEEDED})
+ # add the dependency to the library automoc target
+ set_property(TARGET ${LIBRARY_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library-${CEP_LIBRARY_NEEDED})
+ endif()
+ endforeach()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # LINKING #
+ # #
+ # * Linking is the last stage of compilation #
+ # * Indicate what libraries to use for linking the target #
+ # #
+ #########################################################################
+ # LINKING LIBRARIES
+ target_link_libraries(${LIBRARY_TARGET_NAME} ${CEP_LIBRARIES} ${LINKER_EXTERNAL_LIBRARIES} ${LIBXML2_LIBRARY} ${CAMITK_ITK_LIBRARIES} ${XERCESC_LIBRARIES})
+
+
+
+ #########################################################################
+ # #
+ # OUTPUT #
+ # #
+ # * Define the output directory (location and name) #
+ # * Define the output name of the library #
+ # * Add ${CAMITK_DEBUG_POSTFIX} suffix to Debug MSVC built libraries #
+ # #
+ #########################################################################
+
+ # OUTPUT DIRECTORY LOCATION and NAME depending on the type of the library (PUBLIC or PRIVATE)
+ # DEBGUG POSTFIX FOR MSVC
+ if (${DEFAULT_LIBRARY_NAME_CMAKE}_PUBLIC) # Public library => build in the bin folder
+ if (MSVC)
+ # With Visual Studio, public libraries are built in build\bin directory, else it's in build\lib
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_BIN_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_BIN_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_BIN_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
+ else()
+ # for xcode generation, the <CONFIG> postfix should also be used, but "a la" UNIX (lib in /lib etc...)
+ # no need to check the generator with if(CMAKE_GENERATOR STREQUAL Xcode), as the <CONFIG> postfix should
+ # not affect the other unix generators
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PUBLIC_LIB_DIR}
+ )
+ endif()
+ else() # Private library => build in lib folder
+ if (MSVC)
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES DEBUG_POSTFIX ${CAMITK_DEBUG_POSTFIX})
+ endif()
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ RUNTIME_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ )
+ set_target_properties(${LIBRARY_TARGET_NAME} PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CAMITK_BUILD_PRIVATE_LIB_DIR}
+ )
+ endif()
+
+ # OUTUPUT LIBRARY NAME (without the prefix "library-").
+ string(REGEX REPLACE "^library_|^library-" "" LIBRARY_NAME ${LIBRARY_TARGET_NAME})
+ set_target_properties(${LIBRARY_TARGET_NAME}
+ PROPERTIES OUTPUT_NAME ${LIBRARY_NAME}
+ )
+
+
+
+ #########################################################################
+ # #
+ # COMPILATION FLAG #
+ # #
+ # * Flags are options to give to the compiler #
+ # * Add user input flags #
+ # * Add platform specific flags #
+ # #
+ #########################################################################
+
+ # USER INPUT COMPILER FLAG
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_DEFINES)
+ foreach (FLAG ${${DEFAULT_LIBRARY_NAME_CMAKE}_DEFINES})
+ add_definitions(-D${FLAG})
+ endforeach()
+ endif()
+
+ # USER INPUT CUSTOM COMPILER FLAG
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_CXX_FLAGS)
+ foreach (FLAG ${${DEFAULT_LIBRARY_NAME_CMAKE}_CXX_FLAGS})
+ set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${FLAG}")
+ endforeach()
+ endif()
+
+ # PLATFORM SPECIFIC COMPILER FLAG
+ # 64bits and other platform with relocation needs -fPIC
+ include(TestCXXAcceptsFlag)
+ check_cxx_accepts_flag(-fPIC FPIC_FLAG_ACCEPTED)
+ # no need to add -fPIC on mingw, otherwise it generates a warning: -fPIC ignored for target (all code is position independent) [enabled by default]
+ # msvc is also accepting the flag, but then produce warning D9002 : ignoring unknown option '-fPIC' cl
+ if(FPIC_FLAG_ACCEPTED AND NOT WIN32)
+ set_property(TARGET ${LIBRARY_TARGET_NAME} APPEND PROPERTY COMPILE_FLAGS -fPIC)
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # INSTALLATION #
+ # #
+ # * When installing the project, header files (.h) and test data are #
+ # copied into an installation folder to determine. #
+ # * Indicate in this section, where to install your project and which #
+ # files to copy into that folder (during local/global installation) #
+ # #
+ #########################################################################
+
+ # FOLDER INSTALLATION
+ # Indicate where to install the library, dependending on its property (public / private)
+ if (${DEFAULT_LIBRARY_NAME_CMAKE}_PUBLIC) # public library
+ if(WIN32)
+ # public library -> install in bin folder
+ install(TARGETS ${LIBRARY_TARGET_NAME}
+ RUNTIME DESTINATION bin
+ LIBRARY DESTINATION lib
+ ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
+ COMPONENT ${LIBRARY_NAME_INSTALL}
+ )
+ else()
+ # other public libraries -> install in lib folder
+ install(TARGETS ${LIBRARY_TARGET_NAME}
+ RUNTIME DESTINATION lib
+ LIBRARY DESTINATION lib
+ ARCHIVE DESTINATION lib
+ COMPONENT ${LIBRARY_NAME_INSTALL}
+ )
+ endif()
+ else()
+ # private library -> install in lib/camitk-version folder
+ install(TARGETS ${LIBRARY_TARGET_NAME}
+ RUNTIME DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
+ LIBRARY DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
+ ARCHIVE DESTINATION lib/${CAMITK_SHORT_VERSION_STRING}
+ COMPONENT ${LIBRARY_NAME_INSTALL}
+ )
+ endif()
+
+ # HEADER FILES (.h) INSTALLATION
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS_TO_INSTALL)
+ # If headers information provided for installation => install them
+ export_headers(${${DEFAULT_LIBRARY_NAME_CMAKE}_HEADERS_TO_INSTALL} COMPONENT ${LIBRARY_TARGET_NAME} GROUP libraries)
+ else()
+ # By default, install all headers and keep include directories structure
+ camitk_install_all_headers(COMPONENT ${LIBRARY_TARGET_NAME} GROUP libraries)
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # CDASH SUBPROJECT DESCRIPTION #
+ # #
+ # * Update the XML descriton of the subprojects dependencies #
+ # for CDash. #
+ # #
+ #########################################################################
+ # CDASH XML SUBPROJECTS DESCRIPTION UPDATE
+ if(LIBRARY_TARGET_NAME STREQUAL "library-qtpropertybrowser")
+ # library-qtpropertybrowser is a corelib as library-camitkcore depends on it
+ camitk_sub_project_add(CORELIB ${LIBRARY_TARGET_NAME} DEPENDENCIES ${LIBRARIES_DEPENDENCY_LIST})
+ else()
+ camitk_sub_project_add(CEP_LIBRARY ${LIBRARY_TARGET_NAME} DEPENDENCIES ${LIBRARIES_DEPENDENCY_LIST})
+ endif()
+
+
+
+ #####################################################################################
+ # #
+ # TRANSLATION #
+ # #
+ # * CAMITK_TRANSLATIONS contains the list of language to translate #
+ # the QString to. #
+ # #
+ # * Create the translate.pro file which contains 4 sections: #
+ # - HEADERS: list of .h/.hpp files to look for tr("") QString #
+ # - SOURCES: list of .cpp files to look for tr("") QString #
+ # - FORMS: list of .ui files to look for tr("") QString #
+ # - TRANSLATIONS: list of .ts files which use CAMITK_TRANSLATIONS #
+ # to define each .ts file #
+ # #
+ # * Execute lupdate program to update the .ts files with new QString #
+ # found. #
+ # #
+ # * Execute lrelease program to create .qm files (binary equivalent of #
+ # .ts files #
+ # #
+ # * Create translate.qrc which contains the list of .qm files. #
+ # * Create the flags.qrc file which contains the list of .png flags #
+ # images #
+ # #
+ #####################################################################################
+ if(CAMITK_TRANSLATE)
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE)
+ camitk_translate(EXTRA_LANGUAGE ${${DEFAULT_LIBRARY_NAME_CMAKE}_EXTRA_TRANSLATE_LANGUAGE})
+ else()
+ camitk_translate()
+ endif()
+ endif()
+
+
+
+ #########################################################################
+ # #
+ # PACKAGING CATEGORIZATION #
+ # #
+ # * On Windows, when building a package (win32 installer), the #
+ # install shield wizard proposes you to select which component #
+ # to install. #
+ # * Each component to install has a short description following its #
+ # name to understand its role. #
+ # * This section deals with the categorization and the description #
+ # of the component in this installer. #
+ # #
+ #########################################################################
+
+ # WINDOWS INSTALLER CATEGORIZATION
+ if(${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME) # This input variable describes the category
+ if (${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME MATCHES "SDK")
+ # The default SDK extensions are categorized as "required" and are not "unselectable" by the user at installation time
+ cpack_add_component(${LIBRARY_TARGET_NAME}
+ DISPLAY_NAME ${LIBRARY_TARGET_NAME}
+ DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
+ REQUIRED
+ GROUP SDK
+ )
+
+ else()
+ # Extension is selectable for installation in the wizard of the installer
+ cpack_add_component(${LIBRARY_TARGET_NAME}
+ DISPLAY_NAME ${LIBRARY_TARGET_NAME}
+ DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
+ GROUP ${${DEFAULT_LIBRARY_NAME_CMAKE}_CEP_NAME}
+ )
+ endif()
+ else()
+ # Extension if not categorized for packaging presentation
+ cpack_add_component(${LIBRARY_TARGET_NAME}
+ DISPLAY_NAME ${LIBRARY_TARGET_NAME}
+ DESCRIPTION ${${DEFAULT_LIBRARY_NAME_CMAKE}_DESCRIPTION}
+ )
+
+ endif()
+
+endmacro()
+
+# Old macro to configure a tool
+# Use camitk_library macro instead
+# TODO CAMITK_DEPRECATED. This macro is marked as deprecated. It is to be removed in CamiTK 4.0
+macro(camitk_tool)
+ message(WARNING "Warning: ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt: camitk_tool macro is deprecated, please usecamitk_library(...) instead (use the same parameters).")
+# string(REPLACE "NEEDS_TOOL" "NEEDS_CEP_LIBRARIES" OBSOLETE_ARGN ${ARGN})
+# message(STATUS "**************************************** ${ARGN} ===>>> ${OBSOLETE_ARGN} ")
+ camitk_library(${OBSOLETE_ARGN})
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/CamiTKTranslate.cmake b/sdk/cmake/modules/macros/camitk/CamiTKTranslate.cmake
new file mode 100644
index 0000000..69b6498
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/CamiTKTranslate.cmake
@@ -0,0 +1,126 @@
+#!
+#! @ingroup group_sdk_cmake_camitk
+#!
+#! macro camitk_translate allows to perform the translation of any project (action, component, application and libraries) in several languages.
+#!
+#! usage:
+#! \code
+#! camitk_translate(
+#! [EXTRA_LANGUAGE]
+#! [USE_FLAGS]
+#! )
+#! \endcode
+#!
+#! \param EXTRA_LANGUAGE optional, allows the translation of this additional language
+#! \param USE_FLAGS optional, use the flag directory to associate a flag per language
+macro(camitk_translate)
+
+ if(NOT CAMITK_DISABLE_TRANSLATION) #To allow enabling or not translation, directly from CMake configure command
+
+ parse_arguments(CAMITK_TRANSLATION
+ "EXTRA_LANGUAGE" # possible lists
+ "USE_FLAGS" # possible options
+ ${ARGN}
+ )
+
+ #insert here your new language _xx
+ set(CAMITK_TRANSLATIONS _en_fr)
+
+ if(CAMITK_TRANSLATION_EXTRA_LANGUAGE)
+ set(CAMITK_TRANSLATIONS ${CAMITK_TRANSLATIONS}_${CAMITK_TRANSLATION_EXTRA_LANGUAGE})
+ endif()
+
+ #create translate.pro file
+ file (GLOB HEADER_FILES *.h *.hpp)
+ file (GLOB CPP_FILES *.cpp)
+ file (GLOB UI_FILES *.ui)
+ set (FILES_TO_TRANSLATE ${FILES_TO_TRANSLATE} ${CPP_FILES} ${UI_FILES} ${HEADER_FILES} CACHE INTERNAL "Files to translate")
+
+ file(WRITE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nHEADERS = ")
+ foreach(F ${HEADER_FILES})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
+ endforeach()
+
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nSOURCES = ")
+ foreach(F ${CPP_FILES})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
+ endforeach()
+
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nFORMS = ")
+ foreach(F ${UI_FILES})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${F})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
+ endforeach()
+
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro "\nTRANSLATIONS = ")
+
+ string(TOLOWER ${CAMITK_TRANSLATIONS} CAMITK_TRANSLATIONS)
+ string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
+ string(FIND ${CAMITK_TRANSLATIONS} "_" index)
+
+ while(index GREATER -1)
+ string(SUBSTRING ${CAMITK_TRANSLATIONS} ${index} 3 language)
+
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro ${CMAKE_CURRENT_BINARY_DIR}/translate${language}.ts)
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro " ")
+
+ string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
+ math(EXPR index "${index} + 1 ")
+ math(EXPR longueur "${longueur} - ${index}")
+ string(SUBSTRING ${CAMITK_TRANSLATIONS} ${index} ${longueur} CAMITK_TRANSLATIONS)
+
+ string(LENGTH ${CAMITK_TRANSLATIONS} longueur)
+ string(FIND ${CAMITK_TRANSLATIONS} "_" index)
+
+ endwhile(index GREATER -1)
+
+ #update translate_xx.ts files and create translate_xx.qm files
+ set(WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate )
+ find_path(QT_BINARY_DIR NAMES lupdate)
+ execute_process (COMMAND ${QT_BINARY_DIR}/lupdate -silent ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
+ find_path(QT_BINARY_DIR NAMES lrelease)
+ execute_process (COMMAND ${QT_BINARY_DIR}/lrelease -silent ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
+
+ # remove the translate.pro file
+ file(REMOVE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/translate.pro)
+
+
+ # create the translate_extension_name.qrc file
+ # Remember that the .qrc filename must be unique
+ # Also, when having loaded all .qrc files within the application, you have to point on
+ # each .qm file separately (i.e. use a specific prefix on each .qrc file)
+ get_directory_name(${CMAKE_CURRENT_SOURCE_DIR} EXTENSION_NAME)
+
+ #create the translate.qrc file
+ set(TRANSLATE_QRC_FILE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate_${EXTENSION_NAME}.qrc)
+ file(WRITE ${TRANSLATE_QRC_FILE} "<!DOCTYPE RCC>\n")
+ file(APPEND ${TRANSLATE_QRC_FILE} "<RCC version=\"1.0\">\n")
+ file(APPEND ${TRANSLATE_QRC_FILE} "\t<qresource prefix=\"/translate_${EXTENSION_NAME}\">\n")
+
+ file (GLOB QM_FILES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate ${CMAKE_CURRENT_SOURCE_DIR}/resources/translate/*.qm)
+ foreach(F ${QM_FILES})
+ file(APPEND ${TRANSLATE_QRC_FILE} "\t\t<file>translate/${F}</file>\n")
+ endforeach(F ${QM_FILES})
+
+ file(APPEND ${TRANSLATE_QRC_FILE} "\t</qresource>\n")
+ file(APPEND ${TRANSLATE_QRC_FILE} "</RCC>\n")
+
+ #create the flags.qrc file
+ if(CAMITK_TRANSLATION_USE_FLAGS)
+ file(WRITE ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "<!DOCTYPE RCC>\n")
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "<RCC version=\"1.0\">\n")
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t<qresource prefix=\"/flags\">\n")
+
+ file(GLOB PNG_FILES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR}/resources ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags/16/*.png)
+
+ foreach(F ${PNG_FILES})
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t\t<file>${F}</file>\n")
+ endforeach(F ${PNG_FILES})
+
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "\t</qresource>\n")
+ file(APPEND ${CMAKE_CURRENT_SOURCE_DIR}/resources/flags.qrc "</RCC>\n")
+ endif()
+ endif()
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectAdd.cmake b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectAdd.cmake
new file mode 100644
index 0000000..95c2dc5
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectAdd.cmake
@@ -0,0 +1,94 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_cdash_projects
+#!
+#! macro camitk_sub_project_add adds a subproject definition from targets and its dependencies (if any) to the variable
+#! Typically recursively call this function accross all targets to generate Project.xml file.
+#!
+#! Usage:
+#! \code
+#! camitk_sub_project_add(ACTION|COMPONENT|CEP_LIBRARY|APPLICATION target name
+#! [DEPENDENCIES dep1 dep2 dep3]
+#!
+#! )
+#! \endcode
+#!
+#! \param TARGET_TYPE name the library / exe program targeted for CMake compilation
+#! \param DEPENDENCIES (optional) the library dependencies to build the target
+macro(camitk_sub_project_add)
+ parse_arguments(ADD_SUB_PROJECT
+ "ACTION;COMPONENT;CEP_LIBRARY;APPLICATION;CORELIB;DEPENDENCIES" # possible lists
+ "" #possible options
+ ${ARGN}
+ )
+
+ # check types
+ # CORE LIBRARIES
+ if(ADD_SUB_PROJECT_CORELIB)
+ set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_CORELIB})
+ # Add the xml node for this current subproject
+ set(xml_subproject_corelibraries ${xml_subproject_corelibraries} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
+ set(xml_subproject_corelibraries ${xml_subproject_corelibraries} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
+ endforeach()
+ set(xml_subproject_corelibraries ${xml_subproject_corelibraries} " </SubProject>" CACHE INTERNAL "")
+ endif()
+
+ # LIBRARY
+ if(ADD_SUB_PROJECT_CEP_LIBRARY)
+ set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_CEP_LIBRARY})
+ # Add the xml node for this current subproject
+ set(xml_subproject_libraries ${xml_subproject_libraries} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
+ set(xml_subproject_libraries ${xml_subproject_libraries} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
+ endforeach()
+ set(xml_subproject_libraries ${xml_subproject_libraries} " </SubProject>" CACHE INTERNAL "")
+ set(CAMITK_CEP_LIBRARY_TARGETS ${CAMITK_CEP_LIBRARY_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK CEP library targets" FORCE)
+ endif()
+
+ # COMPONENTS
+ if(ADD_SUB_PROJECT_COMPONENT)
+ set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_COMPONENT})
+ # Add the xml node for this current subproject
+ set(xml_subproject_components ${xml_subproject_components} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
+ set(xml_subproject_components ${xml_subproject_components} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
+ endforeach()
+ set(xml_subproject_components ${xml_subproject_components} " </SubProject>" CACHE INTERNAL "")
+ set(CAMITK_COMPONENT_TARGETS ${CAMITK_COMPONENT_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK component targets" FORCE)
+ endif()
+
+ # ACTIONS
+ if(ADD_SUB_PROJECT_ACTION)
+ set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_ACTION})
+ if(SUB_PROJECT_NAME STREQUAL "action-application")
+ # Particular case of action-applications
+ set(xml_subproject_action_application "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ set(xml_subproject_action_application ${xml_subproject_action_application} "\n <Dependency name=\"library-camitkcore\"/>" CACHE INTERNAL "")
+ set(xml_subproject_action_application ${xml_subproject_action_application} " </SubProject>" CACHE INTERNAL "")
+ else()
+ # Add the xml node for this current subproject
+ set(xml_subproject_actions ${xml_subproject_actions} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
+ set(xml_subproject_actions ${xml_subproject_actions} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
+ endforeach()
+ set(xml_subproject_actions ${xml_subproject_actions} " </SubProject>" CACHE INTERNAL "")
+ endif()
+ set(CAMITK_ACTION_TARGETS ${CAMITK_ACTION_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK action targets" FORCE)
+ endif()
+
+ # APPLICATION
+ if(ADD_SUB_PROJECT_APPLICATION)
+ set(SUB_PROJECT_NAME ${ADD_SUB_PROJECT_APPLICATION})
+ # Add the xml node for this current subproject
+ set(xml_subproject_applications ${xml_subproject_applications} "\n <SubProject name=\"${SUB_PROJECT_NAME}\">" CACHE INTERNAL "")
+ foreach(DEPENDENCY ${ADD_SUB_PROJECT_DEPENDENCIES})
+ set(xml_subproject_applications ${xml_subproject_applications} "\n <Dependency name=\"${DEPENDENCY}\"/>" CACHE INTERNAL "")
+ endforeach()
+ set(xml_subproject_applications ${xml_subproject_applications} " </SubProject>" CACHE INTERNAL "")
+ set(CAMITK_APPLICATION_TARGETS ${CAMITK_APPLICATION_TARGETS} ${SUB_PROJECT_NAME} CACHE STRING "List of CamiTK applications targets" FORCE)
+ endif()
+
+ # CDash subprojects listing
+ set(CAMITK_SUBPROJECTS ${CAMITK_SUBPROJECTS} ${SUB_PROJECT_NAME} CACHE INTERNAL "")
+
+endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectInit.cmake b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectInit.cmake
new file mode 100644
index 0000000..010d1dd
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectInit.cmake
@@ -0,0 +1,51 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_cdash_projects
+#!
+#! MACRO camitk_sub_project_init initializes the xml_subprojects variable to gather CamiTK subprojects
+#!
+#! usage:
+#! \code
+#! camitk_sub_project_init()
+#! \endcode
+macro(camitk_sub_project_init)
+ if(CAMITK_EXTENSION_PROJECT_SET)
+ if(NOT CAMITK_XML_PROJECT_DESCRIPTION)
+ # This is a call to camitk_sub_project_init from the first CEP of a CEP Set
+ set(CAMITK_XML_PROJECT_DESCRIPTION "<?xml version=\"1.0\"?><Project name=\"${CAMITK_EXTENSION_PROJECT_SET_NAME}\">" CACHE INTERNAL "")
+ set(CAMITK_SUBPROJECTS "" CACHE INTERNAL "")
+ # for .cep packaging
+ set(CAMITK_ACTION_TARGETS "" CACHE STRING "List of CamiTK action targets" FORCE)
+ set(CAMITK_COMPONENT_TARGETS "" CACHE STRING "List of CamiTK component targets" FORCE)
+ set(CAMITK_CEP_LIBRARY_TARGETS "" CACHE STRING "List of CamiTK library targets" FORCE)
+ set(CAMITK_APPLICATION_TARGETS "" CACHE STRING "List of CamiTK application targets" FORCE)
+
+ # The different CMake variable to parse for CDash dependencies
+ # This variables are CMake persistent
+ set(xml_subproject_corelibraries "" CACHE INTERNAL "")
+ set(xml_subproject_libraries "" CACHE INTERNAL "")
+ set(xml_subproject_action_application "" CACHE INTERNAL "")
+ set(xml_subproject_components "" CACHE INTERNAL "")
+ set(xml_subproject_actions "" CACHE INTERNAL "")
+ set(xml_subproject_applications "" CACHE INTERNAL "")
+
+ endif()
+ else()
+ # This is a call to camitk_sub_project_init from a standalone CEP
+ set(CAMITK_XML_PROJECT_DESCRIPTION "<?xml version=\"1.0\"?><Project name=\"${CMAKE_PROJECT_NAME}\">" CACHE INTERNAL "")
+ set(CAMITK_SUBPROJECTS "" CACHE INTERNAL "")
+ # for .cep packaging
+ set(CAMITK_ACTION_TARGETS "" CACHE STRING "List of CamiTK action targets" FORCE)
+ set(CAMITK_COMPONENT_TARGETS "" CACHE STRING "List of CamiTK component targets" FORCE)
+ set(CAMITK_CEP_LIBRARY_TARGETS "" CACHE STRING "List of CamiTK library targets" FORCE)
+ set(CAMITK_APPLICATION_TARGETS "" CACHE STRING "List of CamiTK application targets" FORCE)
+
+ # The different CMake variable to parse for CDash dependencies
+ # This variables are CMake persistent
+ set(xml_subproject_corelibraries "" CACHE INTERNAL "")
+ set(xml_subproject_libraries "" CACHE INTERNAL "")
+ set(xml_subproject_action_application "" CACHE INTERNAL "")
+ set(xml_subproject_components "" CACHE INTERNAL "")
+ set(xml_subproject_actions "" CACHE INTERNAL "")
+ set(xml_subproject_applications "" CACHE INTERNAL "")
+ endif()
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectValidate.cmake b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectValidate.cmake
new file mode 100644
index 0000000..7bee401
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/cdash/projects/CamiTKSubProjectValidate.cmake
@@ -0,0 +1,72 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_cdash_projects
+#!
+#! macro camitk_sub_project_validate validates the xml_subprojects variable by ending its xml tag
+#! i.e. By adding the closing </Project> xml node, this will close the xml data
+#! Then create the '${CMAKE_BINARY_DIR}/Project.xml file
+#! Use this file to send to the DashBoard to get the CEP and its subprojects definition
+#!
+#! Usage:
+#! \code
+#! camitk_sub_project_validate()
+#! \endcode
+#!
+#! \param CEP_SET (optional) should be added only if this is a CEP set validation
+macro(camitk_sub_project_validate)
+ parse_arguments(ADD_SUB_PROJECT_VALIDATE
+ "" # possible lists
+ "CEP_SET" # possible options
+ ${ARGN}
+ )
+
+ # if this a standalone CEP, then write the cdash xml report
+ if(NOT CAMITK_EXTENSION_PROJECT_SET OR ADD_SUB_PROJECT_VALIDATE_CEP_SET)
+
+ # Add the CDash dependencies in the correct order
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_corelibraries})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_libraries})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_action_application})
+
+ # Add camitk opensource CEP specific subprojects
+ if(${CAMITK_EXTENSION_PROJECT_SET_NAME} MATCHES "camitk-opensource")
+ # Add application-testcomponents
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"application-testcomponents\"> ")
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"library-camitkcore \"/>")
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"action-application \"/>")
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} " </SubProject>")
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_components})
+ # Add application-testactions
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"application-testactions\"> ")
+ list(REMOVE_DUPLICATES CAMITK_COMPONENT_TARGETS) # avoid duplicates
+ foreach(DEPENDENCY ${CAMITK_COMPONENT_TARGETS})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <Dependency name=\"${DEPENDENCY}\"/>")
+ endforeach()
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} " </SubProject>")
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_actions})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_applications})
+
+ # Add packaging source, packaging and api_doc target (COMMENTED > let's be frank, those are not compiled anymore on VMs)
+# set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"package-source\">\n </SubProject>")
+# set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"package\">\n </SubProject>")
+# set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n <SubProject name=\"apidoc\">\n </SubProject>")
+ else() # Other external CEP
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_components})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_actions})
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} ${xml_subproject_applications})
+ endif()
+
+
+
+ # Write down the Project.xml file
+ set(CAMITK_XML_PROJECT_DESCRIPTION ${CAMITK_XML_PROJECT_DESCRIPTION} "\n</Project>")
+ set(filename "${CMAKE_BINARY_DIR}/Project.xml")
+ file(WRITE ${filename} ${CAMITK_XML_PROJECT_DESCRIPTION})
+ message(STATUS "Generated ${filename} for project description")
+
+ # Write down subprojects.cmake filename
+ list(REMOVE_DUPLICATES CAMITK_SUBPROJECTS)
+ set(filename "${CMAKE_BINARY_DIR}/Subprojects.cmake")
+ file(WRITE ${filename} "set(CAMITK_SUBPROJECTS ${CAMITK_SUBPROJECTS})")
+ message(STATUS "Generated ${filename} for subprojects listing")
+ endif()
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/packaging/CamiTKCEPPackaging.cmake b/sdk/cmake/modules/macros/camitk/packaging/CamiTKCEPPackaging.cmake
new file mode 100644
index 0000000..8d4fd41
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/packaging/CamiTKCEPPackaging.cmake
@@ -0,0 +1,490 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_packaging
+#!
+#! CamiTK cep packaging allows you to build a package from a CEP
+#! If README and COPYRIGHT files exists at top source dir, then
+#! they will be included in the source package
+#!
+#! Usage:
+#! \code
+#! camitk_cep_packaging(DESCRIPTION "CEP package description"
+#! [NAME packageName]
+#! [VENDOR vendorName]
+#! [CONTACT contactName]
+#! )
+#! \endcode
+#!
+# \param DESCRIPTION Some comments on what is this CEP package about
+#! \param NAME (optional) Specify the package name (default is project name)
+#! \param VENDOR (optional) Specify the vendor name (default is TIMC-IMAG)
+#! \param CONTACT (optional) Specify the contact name (default is link to CamiTK website)
+#! \param APPLICATIONS (optional) If you want to package some applications
+#!
+#! When configuring CMake, do not forget to set the CMAKE_INSTALL_PREFIX correctly (e.g., /usr on Linux)
+#! It will always use the CamiTK install directory as install prefix (install where the core is already)
+#!
+#! To generate deb package add this to the cmake configuration line: -DCPACK_BINARY_DEB:BOOL=TRUE
+#! To generate rpm package add this to the cmake configuration line: -DCPACK_BINARY_RPM:BOOL=TRUE
+macro(camitk_cep_packaging)
+
+# CEP Packaging only works for stand-alone CEP
+if (NOT CAMITK_EXTENSION_PROJECT_SET)
+
+parse_arguments(CAMITK_CEP_PACKAGING
+ "NAME;VENDOR;CONTACT;APPLICATIONS;DESCRIPTION;LICENSE" # possible lists
+ "" # possible option
+ ${ARGN}
+)
+
+# Clean list of targets by removing duplicates
+# Those may appear if configuring more than once (i.e. by manually clicking more than once on the CMake configure
+# button before generating
+list(REMOVE_DUPLICATES CAMITK_ACTION_TARGETS)
+list(REMOVE_DUPLICATES CAMITK_COMPONENT_TARGETS)
+list(REMOVE_DUPLICATES CAMITK_CEP_LIBRARY_TARGETS)
+list(REMOVE_DUPLICATES CAMITK_APPLICATION_TARGETS)
+
+# package named
+if (CAMITK_CEP_PACKAGING_NAME)
+ set(PACKAGING_NAME ${CAMITK_CEP_PACKAGING_NAME})
+else()
+ # package name is project name
+ set(PACKAGING_NAME ${CMAKE_PROJECT_NAME})
+endif()
+string(TOLOWER ${PACKAGING_NAME} CPACK_PACKAGE_NAME)
+set(CPACK_PACKAGE_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})
+set(CPACK_PACKAGE_VERSION_MINOR ${CAMITK_VERSION_MINOR})
+set(CPACK_PACKAGE_VERSION_PATCH "0")
+string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
+
+# contact information
+if (CAMITK_CEP_PACKAGING_VENDOR)
+ set(CPACK_PACKAGE_VENDOR ${CAMITK_CEP_PACKAGING_VENDOR})
+else()
+ set(CPACK_PACKAGE_VENDOR "UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525")
+endif()
+if (CAMITK_CEP_PACKAGING_CONTACT)
+ set(CPACK_PACKAGE_CONTACT ${CAMITK_CEP_PACKAGING_CONTACT})
+else()
+ set(CPACK_PACKAGE_CONTACT "http://camitk.imag.fr")
+endif()
+
+# resource files
+if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/README")
+ set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
+endif()
+if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
+ set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
+endif()
+
+# applications / executable
+set(EXECUTABLES_TO_PACKAGE)
+foreach(APPLICATION_TARGET_NAME ${CAMITK_APPLICATION_TARGETS})
+ # name and label are the same
+ set(EXECUTABLES_TO_PACKAGE ${EXECUTABLES_TO_PACKAGE} ${APPLICATION_TARGET_NAME} ${APPLICATION_TARGET_NAME})
+endforeach()
+set(CPACK_PACKAGE_EXECUTABLES ${EXECUTABLES_TO_PACKAGE})
+
+# package description
+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY ${CAMITK_CEP_PACKAGING_DESCRIPTION})
+
+# Files to ignore during generation of the package
+set(CPACK_SOURCE_IGNORE_FILES
+"~$"
+"/CVS/"
+"tags"
+"/\\\\.svn/"
+"/\\\\.git/"
+"/kdev4$/"
+"/build/"
+"\\\\.kdevses$"
+"\\\\.kdev4$"
+"\\\\.kdevelop\\\\.pcs$"
+".DS_Store"
+${CPACK_SOURCE_IGNORE_FILES}
+)
+
+set(CPACK_SOURCE_GENERATOR "TGZ" "ZIP" )
+
+# ----------------------------------
+# Unix packages (Ubuntu and Debian)
+# ----------------------------------
+if (UNIX AND NOT WIN32)
+
+ message(STATUS "Packaging ${CPACK_PACKAGE_NAME} for UNIX systems")
+ # Try to find architecture
+ execute_process(COMMAND uname -m OUTPUT_VARIABLE CPACK_PACKAGE_ARCHITECTURE)
+ string(STRIP "${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_ARCHITECTURE)
+ # Try to find distro name and distro-specific arch
+ execute_process(COMMAND lsb_release -is OUTPUT_VARIABLE LSB_ID)
+ execute_process(COMMAND lsb_release -rs OUTPUT_VARIABLE LSB_RELEASE)
+ string(STRIP "${LSB_ID}" LSB_ID)
+ string(STRIP "${LSB_RELEASE}" LSB_RELEASE)
+ set(LSB_DISTRIB "${LSB_ID}${LSB_RELEASE}")
+ if(NOT LSB_DISTRIB)
+ set(LSB_DISTRIB "unix")
+ endif(NOT LSB_DISTRIB)
+ message(STATUS "Packager architecture : ${LSB_DISTRIB}")
+
+ #Find DPKG
+ find_program(DPKG
+ NAMES dpkg-deb
+ PATHS "/usr/bin" #Add paths here
+ )
+ if ( DPKG )
+ get_filename_component(DPKG_PATH ${DPKG} ABSOLUTE)
+ message(STATUS "Packaging deb using ${DPKG_PATH}: OK")
+ set(DPKG_FOUND "YES")
+ else()
+ set(DPKG_FOUND "NO")
+ endif()
+
+ # For Debian-based distribs we want to create DEB packages.
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu|Debian")
+
+ # We need to alter the architecture names as per distro rules
+ if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "i[3-6]86")
+ set(CPACK_PACKAGE_ARCHITECTURE i386)
+ endif()
+ if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "x86_64")
+ set(CPACK_PACKAGE_ARCHITECTURE amd64)
+ endif()
+ # Set the dependencies based on the distrib version
+
+ # Installation path
+ # Set the install location to "/usr"
+ # set(CAMITK_INSTALL_ROOT "/usr") # Set the CamiTK install root path in your CMake command line / GUI.
+ set(CPACK_PACKAGING_INSTALL_PREFIX "/usr")
+ set(CPACK_PACKAGE_DEFAULT_LOCATION "/usr")
+ set(CPACK_SET_DESTDIR TRUE)
+
+ # Dependencies depending on the Operating System.
+ # Ubuntu11.10
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu11.10")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.6-qt4, libxerces-c3.1 ")
+ endif()
+ # For Ubuntu12.04
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04")
+ set(LSB_DISTRIB "Ubuntu12.xx")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
+ endif()
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04.1")
+ set(LSB_DISTRIB "Ubuntu12.xx")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
+ endif()
+ # For Ubuntu12.10
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu12.10")
+ set(LSB_DISTRIB "Ubuntu12.xx")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev, libinsighttoolkit3.20, libxml2, libvtk5.8-qt4, libxerces-c3.1 ")
+ endif()
+
+ # TODO Debian dependencies (see CamiTKPackaging.cmake)
+
+ if(NOT CPACK_DEBIAN_PACKAGE_DEPENDS)
+ message(STATUS "Packaging for ${LSB_DISTRIB} not supported yet.\nPlease set deps in cmake/darktable-packaging.cmake before packaging.")
+ endif()
+
+ endif()
+
+ # package name
+ string(TOLOWER "${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
+
+endif()
+
+
+
+if(WIN32 AND NOT UNIX)
+ # -----------------------
+ # NSIS Windows installer
+ # -----------------------
+
+ # Update package name for windows release
+ set(LSB_DISTRIB "win32")
+ set(CPACK_PACKAGE_ARCHITECTURE i386)
+ string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${CAMITK_VER_NICKNAME}-${LSB_DISTRIB}" CPACK_PACKAGE_FILE_NAME)
+
+ # Try to find Makensis on Linux distribution
+ find_program(MAKENSIS
+ NAMES makensis
+ PATHS "/usr/bin"
+ )
+
+ if(MAKENSIS)
+ set(ITK_ROOT_DIR "C:/dev/ITK/3.20.1")
+
+ # MinGW compiler
+ if ("${CMAKE_GENERATOR}" MATCHES "MinGW Makefiles")
+ # NSIS Windows installer
+ message(STATUS "Packaging nsis using ${MAKENSIS} with MinGW compiler")
+ # Qt dependencies
+ set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
+ ##TODO use GetPrerequisites.cmake (i.e. find a better way to list dependencies)
+ ##get_prerequisites() is not well enough documented to justify the time investement - EP May 2011
+ ${QT_BINARY_DIR}/QtCore4.dll
+ ${QT_BINARY_DIR}/QtGui4.dll
+ ${QT_BINARY_DIR}/QtSvg4.dll
+ ${QT_BINARY_DIR}/QtXml4.dll
+ ${QT_BINARY_DIR}/QtNetwork4.dll
+ ${QT_BINARY_DIR}/QtSql4.dll
+ ${QT_BINARY_DIR}/QtWebKit4.dll
+ # VTK dependencies
+ ${VTK_LIBRARY_DIRS}/libQVTK.dll
+ ${VTK_LIBRARY_DIRS}/libvtkCommon.dll
+ ${VTK_LIBRARY_DIRS}/libvtksys.dll
+ ${VTK_LIBRARY_DIRS}/libvtkFiltering.dll
+ ${VTK_LIBRARY_DIRS}/libvtkGraphics.dll
+ ${VTK_LIBRARY_DIRS}/libvtkHybrid.dll
+ ${VTK_LIBRARY_DIRS}/libvtkIO.dll
+ ${VTK_LIBRARY_DIRS}/libvtkImaging.dll
+ ${VTK_LIBRARY_DIRS}/libvtkRendering.dll
+ ${VTK_LIBRARY_DIRS}/libvtkVolumeRendering.dll
+ ${VTK_LIBRARY_DIRS}/libvtkverdict.dll
+ ${VTK_LIBRARY_DIRS}/libvtkDICOMParser.dll
+ ${VTK_LIBRARY_DIRS}/libvtkNetCDF.dll
+ ${VTK_LIBRARY_DIRS}/libvtkNetCDF_cxx.dll
+ ${VTK_LIBRARY_DIRS}/libvtkexpat.dll
+ ${VTK_LIBRARY_DIRS}/libvtkjpeg.dll
+ ${VTK_LIBRARY_DIRS}/libvtkmetaio.dll
+ ${VTK_LIBRARY_DIRS}/libvtkpng.dll
+ ${VTK_LIBRARY_DIRS}/libvtktiff.dll
+ ${VTK_LIBRARY_DIRS}/libvtkzlib.dll
+ ${VTK_LIBRARY_DIRS}/libvtkInfovis.dll
+ ${VTK_LIBRARY_DIRS}/libvtkfreetype.dll
+ ${VTK_LIBRARY_DIRS}/libvtkftgl.dll
+ ${VTK_LIBRARY_DIRS}/libvtkalglib.dll
+ ${VTK_LIBRARY_DIRS}/libvtklibxml2.dll
+ ${VTK_LIBRARY_DIRS}/libvtkViews.dll
+ ${VTK_LIBRARY_DIRS}/libvtkexoIIc.dll
+ ${VTK_LIBRARY_DIRS}/libvtkWidgets.dll
+ ${VTK_LIBRARY_DIRS}/vtkhdf5.dll
+ ${VTK_LIBRARY_DIRS}/vtkhdf5_hl.dll
+ ${VTK_LIBRARY_DIRS}/libLSDyna.dll
+ # Xerces-c dependency
+ # ${XERCESC_ROOT_DIR}/bin/xerces-c_3_1.dll
+ # Libxml2 dependencies
+ # ${LIBXML2_INCLUDE_DIR}/../bin/iconv.dll
+ C:/dev/libxml2/2.8/bin/libxml2-2.dll
+ # ${LIBXML2_INCLUDE_DIR}/../bin/zlib1.dll
+ # ITK dependency
+ ${ITK_ROOT_DIR}/bin/libITKAlgorithms.dll
+ ${ITK_ROOT_DIR}/bin/libITKCommon.dll
+ ${ITK_ROOT_DIR}/bin/libITKBasicFilters.dll
+ ${ITK_ROOT_DIR}/lib/InsightToolkit/libitksys.dll
+ ${ITK_ROOT_DIR}/bin/libitkvnl.dll
+ ${ITK_ROOT_DIR}/bin/libitkvnl_algo.dll
+ ${ITK_ROOT_DIR}/bin/libITKIO.dll
+ ${ITK_ROOT_DIR}/bin/libitkv3p_lsqr.dll
+ ${ITK_ROOT_DIR}/bin/libitkv3p_netlib.dll
+ ${ITK_ROOT_DIR}/bin/libITKDICOMParser.dll
+ ${ITK_ROOT_DIR}/bin/libITKEXPAT.dll
+ ${ITK_ROOT_DIR}/bin/libitkgdcm.dll
+ ${ITK_ROOT_DIR}/bin/libitkjpeg8.dll
+ ${ITK_ROOT_DIR}/bin/libITKMetaIO.dll
+ ${ITK_ROOT_DIR}/bin/libITKniftiio.dll
+ ${ITK_ROOT_DIR}/bin/libITKNrrdIO.dll
+ ${ITK_ROOT_DIR}/bin/libitkpng.dll
+ ${ITK_ROOT_DIR}/bin/libitktiff.dll
+ ${ITK_ROOT_DIR}/bin/libitkzlib.dll
+ ${ITK_ROOT_DIR}/bin/libitkjpeg12.dll
+ ${ITK_ROOT_DIR}/bin/libitkjpeg16.dll
+ ${ITK_ROOT_DIR}/bin/libitkopenjpeg.dll
+ ${ITK_ROOT_DIR}/bin/libITKznz.dll
+ # MinGW Dependencies
+ C:/dev/MinGW/bin/libgcc_s_dw2-1.dll
+ C:/dev/MinGW/bin/libstdc++-6.dll
+ C:/dev/MinGW/bin/mingwm10.dll
+ )
+
+ endif()
+
+ # MSVC compiler
+ if (MSVC)
+
+ message(STATUS "Packaging nsis using ${MAKENSIS} with MSVC compiler")
+
+ set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
+ ##TODO use GetPrerequisites.cmake (i.e. find a better way to list dependencies)
+ ##get_prerequisites() is not well enough documented to justify the time investement - EP May 2011
+ # Qt dependencies
+ ${QT_BINARY_DIR}/QtCore4.dll
+ ${QT_BINARY_DIR}/QtGui4.dll
+ ${QT_BINARY_DIR}/QtSvg4.dll
+ ${QT_BINARY_DIR}/QtXml4.dll
+ ${QT_BINARY_DIR}/QtNetwork4.dll
+ ${QT_BINARY_DIR}/QtSql4.dll
+ ${QT_BINARY_DIR}/QtWebKit4.dll
+ # VTK dependencies
+ ${VTK_DIR}/../../bin/QVTK.dll
+ ${VTK_DIR}/../../bin/vtkCommon.dll
+ ${VTK_DIR}/../../bin/vtksys.dll
+ ${VTK_DIR}/../../bin/vtkFiltering.dll
+ ${VTK_DIR}/../../bin/vtkGraphics.dll
+ ${VTK_DIR}/../../bin/vtkHybrid.dll
+ ${VTK_DIR}/../../bin/vtkIO.dll
+ ${VTK_DIR}/../../bin/vtkImaging.dll
+ ${VTK_DIR}/../../bin/vtkRendering.dll
+ ${VTK_DIR}/../../bin/vtkVolumeRendering.dll
+ ${VTK_DIR}/../../bin/vtkverdict.dll
+ ${VTK_DIR}/../../bin/vtkDICOMParser.dll
+ ${VTK_DIR}/../../bin/vtkNetCDF.dll
+ ${VTK_DIR}/../../bin/vtkNetCDF_cxx.dll
+ ${VTK_DIR}/../../bin/vtkexpat.dll
+ ${VTK_DIR}/../../bin/vtkjpeg.dll
+ ${VTK_DIR}/../../bin/vtkmetaio.dll
+ ${VTK_DIR}/../../bin/vtkpng.dll
+ ${VTK_DIR}/../../bin/vtktiff.dll
+ ${VTK_DIR}/../../bin/vtkzlib.dll
+ ${VTK_DIR}/../../bin/vtkInfovis.dll
+ ${VTK_DIR}/../../bin/vtkfreetype.dll
+ ${VTK_DIR}/../../bin/vtkftgl.dll
+ ${VTK_DIR}/../../bin/vtkalglib.dll
+ ${VTK_DIR}/../../bin/vtklibxml2.dll
+ ${VTK_DIR}/../../bin/vtkViews.dll
+ ${VTK_DIR}/../../bin/vtkexoIIc.dll
+ ${VTK_DIR}/../../bin/vtkWidgets.dll
+ ${VTK_DIR}/../../bin/vtkhdf5.dll
+ ${VTK_DIR}/../../bin/vtkhdf5_hl.dll
+ ${VTK_DIR}/../../bin/LSDyna.dll
+ # Xerces-c dependency
+ ${XERCESC_ROOT_DIR}/bin/xerces-c_3_1.dll
+ # Libxml2 dependencies
+ ${LIBXML2_INCLUDE_DIR}/../bin/iconv.dll
+ ${LIBXML2_INCLUDE_DIR}/../bin/libxml2.dll
+ ${LIBXML2_INCLUDE_DIR}/../bin/zlib1.dll
+ # ITK dependency
+ ${ITK_DIR}/../../bin/ITKCommon.dll
+ )
+ endif()
+
+ # Copy those dependencies DLLs if packaging on Windows.
+ if (PACKAGING_NSIS)
+ include(InstallRequiredSystemLibraries)
+ endif()
+
+ # Application icon
+ set(CAMITK_PACKAGE_ICON "${CMAKE_CURRENT_SOURCE_DIR}\\\\core\\\\resources\\\\appIcon.ico") #set here the current icon for CamiTK apps
+ set(CPACK_PACKAGE_ICON ${CAMITK_PACKAGE_ICON}) #icon for the top bar NSIS installer
+ set(CPACK_NSIS_MUI_ICON ${CAMITK_PACKAGE_ICON}) #icon for the generated install program (the .exe to run to install CamiTK).
+ set(CPACK_NSIS_MUI_UNIICON ${CAMITK_PACKAGE_ICON}) #icon for the generated uninstall program (the .exe to run to uninstall CamiTK).
+
+
+ # Installer name
+ set(CPACK_NSIS_DISPLAY_NAME "${CPACK_PACKAGE_NAME} ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
+ set(CPACK_NSIS_INSTALLED_ICON_NAME ${CPACK_PACKAGE_NAME})
+
+ set(CPACK_PACKAGE_INSTALL_DIRECTORY ${CPACK_PACKAGE_NAME})
+ set(CPACK_NSIS_HELP_LINK "http:\\\\\\\\camitk.imag.fr")
+ set(CPACK_NSIS_URL_INFO_ABOUT "http:\\\\\\\\camitk.imag.fr")
+ set(CPACK_NSIS_CONTACT ${CPACK_PACKAGE_CONTACT})
+ include(InstallRequiredSystemLibraries)
+ else()
+ message(STATUS "Can not find makensis: nsis packaging is not possible")
+ endif()
+
+endif()
+
+# ---------------
+# Mac App Bundle
+# ---------------
+if(APPLE)
+ # TODO test this!
+ set(CPACK_GENERATOR "PackageMaker")
+ # Libraries are bundled directly
+ set(CPACK_COMPONENT_LIBRARIES_HIDDEN TRUE)
+ # Bundle Properties
+ set(MACOSX_BUNDLE_BUNDLE_NAME ${CPACK_PACKAGE_NAME})
+ set(MACOSX_BUNDLE_BUNDLE_VERSION ${PROJECT_VERSION})
+ set(MACOSX_BUNDLE_SHORT_VERSION_STRING ${PROJECT_VERSION})
+ set(MACOSX_BUNDLE_LONG_VERSION_STRING "Version ${PROJECT_VERSION}")
+endif()
+
+# and here we go...
+include(CPack)
+
+# ----------------------------
+# CamiTK's own package (.cep)
+# ----------------------------
+# TODO install a CEP in CamiTK
+# TODO CamiTK Market Place
+set(CEP_PACKAGING_DIR "${CMAKE_BINARY_DIR}/CamiTKExtensionPackage")
+set(CEP_PACKAGE_NAME "${CPACK_PACKAGE_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.cep")
+
+add_custom_target(camitk_extension_${PROJECT_NAME}_package
+ # configure for packaging
+ COMMAND ${CMAKE_COMMAND} -DPACKAGING_NSIS:BOOL=ON ${CMAKE_BINARY_DIR}
+ # build first
+ COMMAND ${CMAKE_COMMAND} --build ${CMAKE_BINARY_DIR}
+ # clean CEP package structure
+ COMMAND ${CMAKE_COMMAND} -E remove_directory "${CEP_PACKAGING_DIR}"
+ COMMAND ${CMAKE_COMMAND} -E remove -f ${CMAKE_BINARY_DIR}/${CEP_PACKAGE_NAME}
+ COMMAND ${CMAKE_COMMAND} -E make_directory "${CEP_PACKAGING_DIR}"
+ COMMAND ${CMAKE_COMMAND} -E make_directory "${CEP_PACKAGING_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cep"
+ # copy all cep files
+ COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/lib" "${CEP_PACKAGING_DIR}/lib"
+ COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/bin" "${CEP_PACKAGING_DIR}/bin"
+ COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/include" "${CEP_PACKAGING_DIR}/include"
+ COMMAND ${CMAKE_COMMAND} -E copy_directory "${CMAKE_BINARY_DIR}/share" "${CEP_PACKAGING_DIR}/share"
+ # copy cep manifest
+ COMMAND ${CMAKE_COMMAND} -E copy_if_different ${CMAKE_BINARY_DIR}/CEPPackageManifest.xml ${CEP_PACKAGING_DIR}/share/${CAMITK_SHORT_VERSION_STRING}/cep/${CPACK_PACKAGE_NAME}.xml
+ # compress
+ COMMAND ${CMAKE_COMMAND} -E tar cvz "${CMAKE_BINARY_DIR}/${CEP_PACKAGE_NAME}" "${CEP_PACKAGING_DIR}/"
+ WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
+ # configure back for normal build
+ COMMAND ${CMAKE_COMMAND} -DPACKAGING_NSIS:BOOL=OFF ${CMAKE_BINARY_DIR}
+ COMMENT "Building ${CEP_PACKAGE_NAME}"
+)
+
+#-- Build Manifest
+# get the time stamp
+execute_process(COMMAND "${CAMITK_DIR}/bin/camitk-config" "--timeStamp"
+ RESULT_VARIABLE CAMITK_CONFIG_TIMESTAMP_RETURN_CODE
+ OUTPUT_VARIABLE CAMITK_CONFIG_TIMESTAMP_OUTPUT
+ ERROR_VARIABLE CAMITK_CONFIG_TIMESTAMP_OUTPUT_ERROR
+ OUTPUT_STRIP_TRAILING_WHITESPACE
+ ERROR_STRIP_TRAILING_WHITESPACE
+)
+
+# Generate XML
+set(CEP_PACKAGE_MANIFEST_XML "<?xml version=\"1.0\"?>\n<cep>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <!-- CamiTK Extension Project Manifest File -->")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <name>${CPACK_PACKAGE_NAME}</name>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <contact>${CAMITK_CEP_PACKAGING_CONTACT}</contact>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <description>${CAMITK_CEP_PACKAGING_DESCRIPTION}</description>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <license>${CAMITK_CEP_PACKAGING_LICENSE}</license>")
+if (NOT CAMITK_CONFIG_TIMESTAMP_RETURN_CODE)
+ set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <timeStamp>${CAMITK_CONFIG_TIMESTAMP_OUTPUT}</timeStamp>")
+endif()
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <actions>")
+foreach(TARGET_NAME_ITERATOR ${CAMITK_ACTION_TARGETS})
+ string(REPLACE "action-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
+ set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <action>${TARGET_NAME}</action>")
+endforeach()
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </actions>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <components>")
+foreach(TARGET_NAME_ITERATOR ${CAMITK_COMPONENT_TARGETS})
+ string(REPLACE "component-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
+ set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <component>${TARGET_NAME}</component>")
+endforeach()
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </components>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <libraries>")
+foreach(TARGET_NAME_ITERATOR ${CAMITK_CEP_LIBRARY_TARGETS})
+ set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <library>${TARGET_NAME_ITERATOR}</library>")
+endforeach()
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </libraries>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <applications>")
+foreach(TARGET_NAME_ITERATOR ${CAMITK_APPLICATION_TARGETS})
+ string(REPLACE "application-" "" TARGET_NAME ${TARGET_NAME_ITERATOR})
+ set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " <application>${TARGET_NAME}</application>")
+endforeach()
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} " </applications>")
+set(CEP_PACKAGE_MANIFEST_XML ${CEP_PACKAGE_MANIFEST_XML} "</cep>")
+# replace all ";" by \n
+string (REGEX REPLACE "([^\\]|^);" "\\1\n" CEP_PACKAGE_MANIFEST_XML_TMP "${CEP_PACKAGE_MANIFEST_XML}")
+string (REGEX REPLACE "[\\](.)" "\\1" CEP_PACKAGE_MANIFEST_XML_TEXT "${CEP_PACKAGE_MANIFEST_XML_TMP}") #fixes escaping
+# write manifest
+file(WRITE ${CMAKE_BINARY_DIR}/CEPPackageManifest.xml ${CEP_PACKAGE_MANIFEST_XML_TEXT})
+message(STATUS "Generated CEP manifest in CEPPackageManifest.xml")
+
+
+endif() # Standalone CEP
+endmacro()
\ No newline at end of file
diff --git a/sdk/cmake/modules/macros/camitk/packaging/CamiTKOpenSourcePackaging.cmake b/sdk/cmake/modules/macros/camitk/packaging/CamiTKOpenSourcePackaging.cmake
new file mode 100644
index 0000000..0055747
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/packaging/CamiTKOpenSourcePackaging.cmake
@@ -0,0 +1,501 @@
+#!@ingroup group_sdk_cmake_camitk_packaging
+#!
+# ! To make an installer,
+#! - configure cmake with -DPACKAGING_NSIS:BOOL=TRUE (on windows AND unix)
+#! - use the custom target camitk_package, e.g "make camitk_package"
+#!
+#! On Windows platforms
+#! CMake configure command (from the build directory) :
+#! cmake -DCMAKE_GENERATOR="Visual Studio 12 Win64" -DPACKAGING_NSIS=TRUE -DCEP_IMAGING=TRUE -DCEP_MODELING=TRUE -DAPPLICATION_CEPGENERATOR=FALSE -DAPPLICATION_TESTACTIONS=FALSE -DAPPLICATION_TESTCOMPONENTS=FALSE -DAPPLICATION_WIZARD=FALSE ../src
+#! Launch the camitkopensource.sln visual studio solution file.
+#! Build all in Release (do it again if some .h files missing errors occured)
+#! Build camitk_package target.
+
+#! On UNIX platforms
+#! cmake -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DCEP_IMAGING:BOOL=TRUE -DCEP_MODELING:BOOL=TRUE -DPACKAGING_NSIS:BOOL=TRUE -DCMAKE_INSTALL_PREFIX=/usr
+#!
+#! On debian/ubuntu, you need to have package "dpkg" (to build DEB packages) and package "rpm" (to build RPM packages) installed:
+#! apt-get install dpkg rpm
+#!
+#! To make a source tar ball, just use the custom target camitk_package_sourc
+#! - make camitk_package_source
+#! (it generates the correct CamiTKVersion.h)
+#!
+#! To check the content of a deb package:
+#! dpkg --contents package.deb
+#! To install the content of a deb in a subdirectory instead of system-wide:
+#! dpkg --vextract package.deb subdirectory
+#!
+#! On windows for the NSIS packager, to generate different components that can be opt out at install time, see
+#! http://www.itk.org/Wiki/CMake:Component_Install_With_CPack
+#!
+#! More generally see http://www.itk.org/Wiki/CMake:CPackConfiguration
+
+#! There is a bug deb package (cmake 2.8.9 on Debian Wheezy): permission for directories are not rights
+#! Here is how to fix it (inspired from https://github.com/paralect/robomongo/blob/master/install/linux/fixup_deb.sh.in )
+#! set PACKAGE_FILENAME="camitk-3.3.0-debian-7.x-wheezy_amd64.deb"
+#! cd /tmp
+#! mkdir camitk-deb
+#! dpkg-deb -x $PACKAGE_FILENAME camitk-deb
+#! dpkg-deb --control $PACKAGE_FILENAME camitk-deb/DEBIAN
+#! rm $PACKAGE_FILENAME
+#! find camitk-deb -type d -print0 |xargs -0 chmod 755
+#! find camitk-deb -name "*.1" -print0 |xargs -0 chmod 0644
+#! find fix_up_deb/usr/bin -name "camitk-*" -print0 |xargs -0 chmod 0755
+#! fakeroot dpkg -b camitk-deb $PACKAGE_FILENAME
+#! rm -rf camitk-deb
+
+
+macro(camitk_opensource_packaging)
+
+#! package name
+string(TOLOWER ${CAMITK_PROJECT_NAME} CPACK_PACKAGE_NAME)
+set(CPACK_PACKAGE_VERSION_MAJOR ${CAMITK_VERSION_MAJOR})
+set(CPACK_PACKAGE_VERSION_MINOR ${CAMITK_VERSION_MINOR})
+set(CPACK_PACKAGE_VERSION_PATCH ${CAMITK_VERSION_PATCH})
+set(CPACK_PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
+string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION}-${CAMITK_VER_NICKNAME}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
+
+#! contact information
+set(CPACK_PACKAGE_VENDOR "UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525")
+set(CPACK_PACKAGE_CONTACT "http://camitk.imag.fr")
+set(CPACK_DEBIAN_PACKAGE_MAINTAINER "CamiTK Developers <camitk-team at imag.fr>")
+
+#! resource files
+set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
+set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/COPYRIGHT")
+
+#! executable
+set(CPACK_PACKAGE_EXECUTABLES "camitk-imp" "camitk-imp" "camitk-actionstatemachine" "camitk-actionstatemachine")
+
+#! CamiTK package description
+set(CPACK_PACKAGE_DESCRIPTION "CamiTK stands for Computer Assisted Medical Intervention Tool Kit and aims at providing an easy way to protype medical applications")
+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "CamiTK stands for Computer Assisted Medical Intervention Tool Kit and aims at providing an easy way to protype medical applications. CamiTK functionnalities are extendable thanks to plugins. This package includes the IMP application with main plugins that allow users to interact with medical images (2D, 3D), process them and simulate biomechanichal deformations. It also includes the actionstatemachine application that allows user to easily run a pip [...]
+
+#! Files to ignore during generation of the package
+set(CPACK_SOURCE_IGNORE_FILES
+"~$"
+"/CVS/"
+"tags"
+"/\\\\.svn/"
+"/\\\\.git/"
+"/kdev4$/"
+"/build/"
+"\\\\.kdevses$"
+"\\\\.kdev4$"
+"\\\\.tmp$"
+"\\\\.tmp.save$"
+"\\\\.kdevelop\\\\.pcs$"
+".DS_Store"
+${CPACK_SOURCE_IGNORE_FILES}
+)
+
+set(CPACK_SOURCE_GENERATOR "TGZ" "ZIP" )
+
+#! Detect processor bits range (32bits / 64bits)
+#! not the whole architecture (ARM ...).
+if(CMAKE_SIZEOF_VOID_P EQUAL 8)
+ set(WIN64 TRUE)
+else()
+ set(WIN64 FALSE)
+endif()
+
+
+#! ----------------------------------
+#! Unix packages (Ubuntu and Debian)
+#! ----------------------------------
+if (PACKAGING_NSIS AND UNIX AND NOT WIN32)
+
+ #! Note : even if not packaging for Unix with NSIS, the CMake variable
+ #! PACKAGING_NSIS is used here to indicate we are packaging (i.e. building
+ #! the camitk_package target).
+
+ message(STATUS "Packaging CamiTK for UNIX systems")
+ #! Try to find architecture
+ execute_process(COMMAND uname -m OUTPUT_VARIABLE CPACK_PACKAGE_ARCHITECTURE)
+ string(STRIP "${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_ARCHITECTURE)
+ #! Try to find distro name and distro-specific arch
+ execute_process(COMMAND lsb_release -is OUTPUT_VARIABLE LSB_ID)
+ execute_process(COMMAND lsb_release -rs OUTPUT_VARIABLE LSB_RELEASE)
+ string(STRIP "${LSB_ID}" LSB_ID)
+ string(STRIP "${LSB_RELEASE}" LSB_RELEASE)
+ set(LSB_DISTRIB "${LSB_ID}${LSB_RELEASE}")
+ if(NOT LSB_DISTRIB)
+ set(LSB_DISTRIB "unix")
+ endif(NOT LSB_DISTRIB)
+ message(STATUS "Packager architecture : ${LSB_DISTRIB}")
+
+ #! debian section
+ set(CPACK_DEBIAN_PACKAGE_SECTION "science")
+
+ #!Find DPKG
+ find_program(DPKG
+ NAMES dpkg-deb
+ PATHS "/usr/bin" #!Add paths here
+ )
+ if ( DPKG )
+ get_filename_component(DPKG_PATH ${DPKG} ABSOLUTE)
+ message(STATUS "Packaging deb using ${DPKG_PATH}: OK")
+ set(DPKG_FOUND "YES")
+ else()
+ set(DPKG_FOUND "NO")
+ endif()
+
+ #! Packaging requires ITK
+ find_package(ITK REQUIRED)
+ include(${ITK_USE_FILE})
+
+ #! set the package generator
+ set(CPACK_GENERATOR "DEB" "RPM")
+
+ #! For Debian-based distribs we want to create DEB packages.
+ if ("${LSB_DISTRIB}" MATCHES "Ubuntu|Debian")
+
+ #! We need to alter the architecture names as per distro rules
+ if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "i[3-6]86")
+ set(CPACK_PACKAGE_ARCHITECTURE i386)
+ endif()
+ if("${CPACK_PACKAGE_ARCHITECTURE}" MATCHES "x86_64")
+ set(CPACK_PACKAGE_ARCHITECTURE amd64)
+ endif()
+ #! Set the dependencies based on the distrib version
+
+ #! Installation path
+ #! Set the install location to "/usr"
+ #! PLEASE, set the CamiTK install root path in your CMake command line / GUI (and not directly here)
+ set(CPACK_SET_DESTDIR TRUE)
+ set(CPACK_PACKAGING_INSTALL_PREFIX "/usr")
+ set(CPACK_PACKAGE_DEFAULT_LOCATION "/usr")
+
+
+ #! Dependencies depending on the Operating System.
+ #! Ubuntu12.xx
+ #! WARNING Beware to the syntax of the Debian package dependencies, else it won't manage to install.
+ if("${LSB_DISTRIB}" MATCHES "Ubuntu12.04"
+ OR "${LSB_DISTRIB}" MATCHES "Ubuntu12.04.1"
+ OR "${LSB_DISTRIB}" MATCHES "Ubuntu12.10"
+ OR "${LSB_DISTRIB}" MATCHES "Ubuntu13.04"
+ OR "${LSB_DISTRIB}" MATCHES "Ubuntu13.10"
+ )
+ #! All these ubuntu version dependencies are the same, only one package is needed for all
+ set(LSB_DISTRIB "Ubuntu12.04to13.10")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "cmake, libvtk5-dev (>= 5.8), libqt4-dev, libvtk5-qt4-dev (>= 5.8), xsdcxx, libinsighttoolkit3-dev (>= 3.20), libxerces-c-dev, libxml2-dev, libgdcm2-dev, libfftw3-dev, libqtwebkit-dev | libqt4-dev (<< 4.7), libvtkgdcm2-dev,doxygen, graphviz")
+ endif()
+
+ #! Debian dependencies
+ if ("${LSB_DISTRIB}" MATCHES "Debian7.*") #! Debian Wheezy
+ set(LSB_DISTRIB "Debian-7.x-Wheezy")
+ set(CPACK_DEBIAN_PACKAGE_DEPENDS "libqt4-dev (>= 4:4.8), libqtwebkit4 (>= 2), libqtwebkit-dev (>= 2), libvtk5.8 (>= 5.8.0), libvtk5-dev (>= 5.8.0), libvtk5.8-qt4 (>= 5.8.0), libvtk5-qt4-dev (>= 5.8.0), libinsighttoolkit3-dev (>= 3.20.1), vtk-doc (>= 5.8.0), tcl-vtk (>= 5.8.0), libinsighttoolkit3.20 (>= 3.20.1), libtiff4-dev (>= 3.9), libopenjpeg-dev (>= 1.3), libxml2 (>= 2.7.8), libxml2-dev (>= 2.7.8), xsdcxx (>= 3.3.0), libxerces-c-dev (>= 3.1.1), libgdcm2.2 (>= 2), libgdcm2 [...]
+ endif()
+
+ if(NOT CPACK_DEBIAN_PACKAGE_DEPENDS)
+ message(STATUS "Packaging for ${LSB_DISTRIB} not supported yet.\n")
+ endif()
+
+ endif()
+
+ #! package name
+ string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${LSB_DISTRIB}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
+
+endif()
+
+
+#! -----------------------
+#! Packaging for Windows
+#! -----------------------
+if(WIN32 AND MSVC AND PACKAGING_NSIS)
+
+ #! NSIS must be installed on the computer
+ find_program(MAKENSIS makensis.exe)
+ if(MAKENSIS)
+ message(STATUS "NSIS Packaging using ${MAKENSIS}")
+ else()
+ message(FATAL_ERROR "NSIS executable (makensis.exe) is not installed or not in the system path. Please fix this problem for packaging.")
+ endif()
+
+ #! Update package name for windows release
+ if(WIN64) #!64 bits installer
+ set(CPACK_PACKAGE_ARCHITECTURE amd64)
+ else() #!32 bits installer
+ set(CPACK_PACKAGE_ARCHITECTURE i386)
+ endif()
+ string(TOLOWER "${CPACK_PACKAGE_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}-${CAMITK_VER_NICKNAME}_${CPACK_PACKAGE_ARCHITECTURE}" CPACK_PACKAGE_FILE_NAME)
+
+ message(STATUS "Packaging CamiTK for Windows: ${CPACK_PACKAGE_FILE_NAME}")
+
+ if(WIN64) #! 64bits installer
+ #! Qt libraries
+ set(QT_PACKAGE_LIRABRIES
+ C:/dev/Qt/4.8.5/bin/QtCore4.dll
+ C:/dev/Qt/4.8.5/bin/QtGui4.dll
+ C:/dev/Qt/4.8.5/bin/QtSvg4.dll
+ C:/dev/Qt/4.8.5/bin/QtXml4.dll
+ C:/dev/Qt/4.8.5/bin/QtNetwork4.dll
+ C:/dev/Qt/4.8.5/bin/QtSql4.dll
+ C:/dev/Qt/4.8.5/bin/QtWebKit4.dll
+ )
+
+ #! VTK libraries
+ set(VTK_PACKAGE_LIBRARIES
+ C:/dev/VTK/5.10.1/bin/QVTK.dll
+ C:/dev/VTK/5.10.1/bin/vtkCommon.dll
+ C:/dev/VTK/5.10.1/bin/vtksys.dll
+ C:/dev/VTK/5.10.1/bin/vtkFiltering.dll
+ C:/dev/VTK/5.10.1/bin/vtkGraphics.dll
+ C:/dev/VTK/5.10.1/bin/vtkHybrid.dll
+ C:/dev/VTK/5.10.1/bin/vtkIO.dll
+ C:/dev/VTK/5.10.1/bin/vtkImaging.dll
+ C:/dev/VTK/5.10.1/bin/vtkRendering.dll
+ C:/dev/VTK/5.10.1/bin/vtkVolumeRendering.dll
+ C:/dev/VTK/5.10.1/bin/vtkverdict.dll
+ C:/dev/VTK/5.10.1/bin/vtkDICOMParser.dll
+ C:/dev/VTK/5.10.1/bin/vtkNetCDF.dll
+ C:/dev/VTK/5.10.1/bin/vtkNetCDF_cxx.dll
+ C:/dev/VTK/5.10.1/bin/vtkexpat.dll
+ C:/dev/VTK/5.10.1/bin/vtkjpeg.dll
+ C:/dev/VTK/5.10.1/bin/vtkmetaio.dll
+ C:/dev/VTK/5.10.1/bin/vtkpng.dll
+ C:/dev/VTK/5.10.1/bin/vtktiff.dll
+ C:/dev/VTK/5.10.1/bin/vtkzlib.dll
+ C:/dev/VTK/5.10.1/bin/vtkInfovis.dll
+ C:/dev/VTK/5.10.1/bin/vtkfreetype.dll
+ C:/dev/VTK/5.10.1/bin/vtkftgl.dll
+ C:/dev/VTK/5.10.1/bin/vtkalglib.dll
+ C:/dev/VTK/5.10.1/bin/vtklibxml2.dll
+ C:/dev/VTK/5.10.1/bin/vtkViews.dll
+ C:/dev/VTK/5.10.1/bin/vtkexoIIc.dll
+ C:/dev/VTK/5.10.1/bin/vtkWidgets.dll
+ C:/dev/VTK/5.10.1/bin/vtkhdf5.dll
+ C:/dev/VTK/5.10.1/bin/vtkhdf5_hl.dll
+ C:/dev/VTK/5.10.1/bin/LSDyna.dll
+ )
+
+ #!ITK library
+ set(ITK_PACKAGE_LIBRARIES
+ C:/dev/ITK/4.3.2/bin/ITKCommon-4.3.dll
+ )
+
+ #! GDCM libraries
+ set(GDCM_PACKAGE_LIBRARIES
+ C:/dev/gdcm/2.5/bin/vtkgdcm.dll
+ C:/dev/gdcm/2.5/bin/gdcmcommon.dll
+ C:/dev/gdcm/2.5/bin/gdcmcharls.dll
+ C:/dev/gdcm/2.5/bin/gdcmdict.dll
+ C:/dev/gdcm/2.5/bin/gdcmdsed.dll
+ C:/dev/gdcm/2.5/bin/gdcmexpat.dll
+ C:/dev/gdcm/2.5/bin/gdcmiod.dll
+ C:/dev/gdcm/2.5/bin/gdcmjpeg12.dll
+ C:/dev/gdcm/2.5/bin/gdcmjpeg16.dll
+ C:/dev/gdcm/2.5/bin/gdcmjpeg8.dll
+ C:/dev/gdcm/2.5/bin/gdcmmsff.dll
+ C:/dev/gdcm/2.5/bin/gdcmopenjpeg.dll
+ C:/dev/gdcm/2.5/bin/gdcmzlib.dll
+ C:/dev/gdcm/2.5/bin/gdcmmsff.dll
+ )
+
+ set(LIBXML2_PACKAGE_LIBRARIES
+ C:/dev/libxml2/2.9.1/bin/libiconv-2.dll
+ C:/dev/libxml2/2.9.1/bin/libxml2-2.dll
+ C:/dev/libxml2/2.9.1/bin/zlib1.dll
+ )
+
+ set(XERCES_C_PACKAGE_LIBRARIES
+ C:/dev/xerces-c/3.1.1/bin/xerces-c_3_1.dll
+ )
+
+ else() #! 32bits installer
+
+ #! Qt libraries
+ set(QT_PACKAGE_LIRABRIES
+ C:/dev_x86/Qt/4.8.5/bin/QtCore4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtGui4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtSvg4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtXml4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtNetwork4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtSql4.dll
+ C:/dev_x86/Qt/4.8.5/bin/QtWebKit4.dll
+ )
+
+ #! VTK libraries
+ #! set(VTK_DIR ${VTK_DIR}/../../bin)
+ set(VTK_PACKAGE_LIBRARIES
+ C:/dev_x86/VTK/5.10.1/bin/QVTK.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkCommon.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtksys.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkFiltering.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkGraphics.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkHybrid.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkIO.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkImaging.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkRendering.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkVolumeRendering.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkverdict.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkDICOMParser.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkNetCDF.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkNetCDF_cxx.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkexpat.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkjpeg.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkmetaio.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkpng.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtktiff.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkzlib.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkInfovis.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkfreetype.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkftgl.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkalglib.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtklibxml2.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkViews.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkexoIIc.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkWidgets.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkhdf5.dll
+ C:/dev_x86/VTK/5.10.1/bin/vtkhdf5_hl.dll
+ C:/dev_x86/VTK/5.10.1/bin/LSDyna.dll
+ )
+
+ #!ITK Library
+ set(ITK_PACKAGE_LIBRARIES
+ C:/dev_x86/ITK/4.3.2/bin/ITKCommon-4.3.dll
+ )
+
+ #! GDCM libraries
+ set(GDCM_PACKAGE_LIBRARIES
+ C:/dev_x86/gdcm/2.2.5/bin/vtkgdcm.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmcommon.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmcharls.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmdict.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmdsed.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmexpat.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmiod.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg12.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg16.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmjpeg8.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmmsff.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmopenjpeg.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmzlib.dll
+ C:/dev_x86/gdcm/2.2.5/bin/gdcmmsff.dll
+ )
+
+ set(LIBXML2_PACKAGE_LIBRARIES
+ C:/dev_x86/libxml2/2.7.8/bin/iconv.dll
+ C:/dev_x86/libxml2/2.7.8/bin/libxml2.dll
+ C:/dev_x86/libxml2/2.7.8/bin/zlib1.dll
+ )
+
+ set(XERCES_C_PACKAGE_LIBRARIES
+ C:/dev_x86/xerces-c/3.1.1/bin/xerces-c_3_1.dll
+ )
+ endif() #! end compiler specific settings
+
+ #! Additional libraries to install with the installer
+ set(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS
+ ${QT_PACKAGE_LIRABRIES}
+ ${VTK_PACKAGE_LIBRARIES}
+ ${ITK_PACKAGE_LIBRARIES}
+ ${GDCM_PACKAGE_LIBRARIES}
+ ${LIBXML2_PACKAGE_LIBRARIES}
+ ${XERCES_C_PACKAGE_LIBRARIES}
+ )
+
+ #! By default, do not warn when built on machines using only VS Express:
+ if(NOT DEFINED CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS)
+ SET(CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS_NO_WARNINGS ON)
+ endif()
+
+ #! Tell CMake to copy CMAKE_INSTALL_SYSTEM_RUNTIME_LIBS content into the package
+ include(InstallRequiredSystemLibraries)
+
+ #! Application icon
+ set(CAMITK_PACKAGE_ICON "${CMAKE_CURRENT_SOURCE_DIR}\\\\sdk\\\\libraries\\\\core\\\\resources\\\\appIcon.ico") #!set here the current icon for CamiTK
+ set(CPACK_PACKAGE_ICON ${CAMITK_PACKAGE_ICON}) #!icon for the top bar NSIS installer
+ set(CPACK_NSIS_MUI_ICON ${CAMITK_PACKAGE_ICON}) #!icon for the generated install program (the .exe to run to install CamiTK).
+ set(CPACK_NSIS_MUI_UNIICON ${CAMITK_PACKAGE_ICON}) #!icon for the generated uninstall program (the .exe to run to uninstall CamiTK).
+
+ #! Create desktop icons, by forcing CPack to build an internal command, as 'set(CPACK_NSIS_MODIFY_PATH ON)' option setted in the additional page doesn't work.
+ set(CPACK_NSIS_EXTRA_INSTALL_COMMANDS "CreateShortCut \\\"$DESKTOP\\\\${CAMITK_PROJECT_NAME}-imp.lnk\\\" \\\"$INSTDIR\\\\bin\\\\camitk-imp.exe\\\"")
+
+ #! Tell CPack to remove the icons after uninstalling
+ set(CPACK_NSIS_EXTRA_UNINSTALL_COMMANDS "Delete \\\"$DESKTOP\\\\${CAMITK_PROJECT_NAME}-imp.lnk\\\"")
+
+ #! Installer name
+ set(CPACK_NSIS_DISPLAY_NAME "CamiTK ${CAMITK_VERSION_MAJOR}.${CAMITK_VERSION_MINOR}.${CAMITK_VERSION_PATCH}")
+ set(CPACK_NSIS_INSTALLED_ICON_NAME ${CAMITK_PROJECT_NAME})
+
+ set(CPACK_PACKAGE_INSTALL_DIRECTORY ${CAMITK_PROJECT_NAME})
+ set(CPACK_NSIS_HELP_LINK "http:\\\\\\\\camitk.imag.fr")
+ set(CPACK_NSIS_URL_INFO_ABOUT "http:\\\\\\\\camitk.imag.fr")
+ set(CPACK_NSIS_CONTACT ${CPACK_PACKAGE_CONTACT})
+
+endif()
+
+#! ---------------
+#! Mac App Bundle
+#! ---------------
+if(PACKAGING_NSIS AND APPLE)
+ #! TODO test this!
+ set(CPACK_GENERATOR "PackageMaker")
+ #! Libraries are bundled directly
+ set(CPACK_COMPONENT_LIBRARIES_HIDDEN TRUE)
+ #! Bundle Properties
+ set(MACOSX_BUNDLE_BUNDLE_NAME ${CPACK_PACKAGE_NAME})
+ set(MACOSX_BUNDLE_BUNDLE_VERSION ${PROJECT_VERSION})
+ set(MACOSX_BUNDLE_SHORT_VERSION_STRING ${PROJECT_VERSION})
+ set(MACOSX_BUNDLE_LONG_VERSION_STRING "Version ${PROJECT_VERSION}")
+endif()
+
+
+
+#! Set up CPack configuration
+include(CPack)
+
+#! Create the groups that will contains the installer components
+cpack_add_component_group(SDK
+ DISPLAY_NAME "CamiTK SDK"
+ DESCRIPTION "The CamiTK SDK features the core and basics extensions. CamiTK installation requires at least the SDK"
+ BOLD_TITLE
+ )
+cpack_add_component_group(CEP_IMAGING
+ DISPLAY_NAME "CEP Imaging"
+ DESCRIPTION "The CamiTK Extension Project IMAGING contains image processing extensions. Those extensions are optional."
+ )
+cpack_add_component_group(CEP_MODELING
+ DISPLAY_NAME "CEP Modeling"
+ DESCRIPTION "The CamiTK Extension Project MODELING contains biomechanical extensions. Those extensions are optional."
+ )
+
+#! ----------------------------------
+#! CamiTK specific packaging targets
+#! ----------------------------------
+
+#! create specific target for package source
+#! When packaging, copy the CamiTKPackageVersion.h file to the source directory
+#! Don't forget to remove it immediatly after packaging.
+add_custom_target(camitk_package_source
+ COMMAND ${CMAKE_COMMAND}
+ -E copy ${CMAKE_CURRENT_BINARY_DIR}/CamiTKPackageVersion.h
+ ${CMAKE_CURRENT_SOURCE_DIR}/sdk/libraries/core/CamiTKVersion.h
+ COMMAND ${CMAKE_COMMAND}
+ --build ${CMAKE_BINARY_DIR}
+ --target package_source
+ COMMAND ${CMAKE_COMMAND}
+ -E remove -f ${CMAKE_CURRENT_SOURCE_DIR}/sdk/libraries/core/CamiTKVersion.h
+)
+
+#! This target create the installer / linux package.
+#! On windows, you have configured with PACKAGING_NSIS=TRUE => all project names have their "-" replaced by "_" character
+#! NSIS doesn't support "-" character.
+add_custom_target(camitk_package
+ COMMAND ${CMAKE_COMMAND}
+ -E copy ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
+ ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h-backup
+ COMMAND ${CMAKE_COMMAND}
+ -E copy ${CMAKE_CURRENT_BINARY_DIR}/CamiTKPackageVersion.h
+ ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
+ COMMAND ${CMAKE_COMMAND}
+ --build ${CMAKE_BINARY_DIR}
+ --target PACKAGE --config Release
+ COMMAND ${CMAKE_COMMAND}
+ -E copy ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h-backup
+ ${CMAKE_CURRENT_BINARY_DIR}/sdk/libraries/core/CamiTKVersion.h
+)
+
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/test/CamiTKAddTest.cmake b/sdk/cmake/modules/macros/camitk/test/CamiTKAddTest.cmake
new file mode 100644
index 0000000..0fbfa98
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/CamiTKAddTest.cmake
@@ -0,0 +1,139 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test
+#!
+#! camitk_add_test is a macro to add a new test to the CTest infrastructure
+#! It encapsulates CMake add_test and adds useful way of testing programs.
+#! It cannot operate on its on, you need to call camitk_init_test first (and only once) before
+#! calling camitk_add_test
+#!
+#! Details on the runned test can be found in ${CMAKE_BINARY_DIR}/Testing/Temporary/target#
+#! where target is the executable name (see camitk_init_test() macro), and # is the test order number.
+#!
+#! Usage:
+#! \code
+#! camitk_add_test(EXECUTABLE_ARGS "arg1 arg2 arg3"
+#! PASS_FILE pristineOutput
+#! PASS_REGULAR_EXPRESSION regexp
+#! FAIL_REGULAR_EXPRESSION regexp
+#! PROJECT_NAME name
+#! TEST_SUFFIX name
+#! )
+#! \endcode
+#!
+#! \param EXECUTABLE_ARGS (optional) The executable arguments (all in double quotes), typically each test will have different arguments. Can be empty
+#! \param PASS_FILE (optional) If specified the test to perform is to compare the output of the command to this file. It the output is the same, then the test is passed, otherwise it is failed.
+#! \param PASS_REGULAR_EXPRESSION (optional) This is equivalent to "PASS_REGULAR_EXPRESSION regexp" property for the test, see http://www.cmake.org/Wiki/CTest:FAQ#My_test_does_not_return_non-zero_on_failure._What_can_I_do.3F
+#! \param FAIL_REGULAR_EXPRESSION This is equivalent to "FAIL_REGULAR_EXPRESSION regexp" property for the test, see http://www.cmake.org/Wiki/CTest:FAQ#My_test_does_not_return_non-zero_on_failure._What_can_I_do.3F
+#! \param PROJECT_NAME Base name for the test, can be used for ctest -S
+#! \param TEST_SUFFIX Suffix added to the test name, just after PROJECT_NAME and before the test index
+#!
+#! If no argument are given, it does the equivalent as add_test(name target)
+#!
+#! \note
+#! You can only choose one between nothing, PASS_FILE, PASS_REGULAR_EXPRESSION and FAIL_REGULAR_EXPRESSION
+#!
+#! Example invocation:
+#!
+#! \code
+#!
+#! add_executable(myprogram)
+#!
+#! ...
+#! # Start the test series for myprogram
+#! camitk_init_test(myprogram)
+#! camitk_add_test(EXECUTABLE_ARGS "-a inputfile.xml -c" PASS_FILE pristineOuputToCompareTo.xml) # will be called myprogram1
+#! ...
+#! camitk_add_test(...) # myprogram2
+#!
+#! \endcode
+#
+#! @sa camitk_init_test
+macro(camitk_add_test)
+ parse_arguments(CAMITK_ADD_TEST
+ "EXECUTABLE_ARGS;PASS_FILE;PASS_REGULAR_EXPRESSION;FAIL_REGULAR_EXPRESSION;PASS_FILE_OUTPUT;TEST_SUFFIX;PROJECT_NAME;" # possible lists #PASS_FILE -> compare the std output to a ref file # PASS_FILE_OUTPUT -> compare two files given as parameters
+ "" # possible options
+ ${ARGN}
+ )
+
+ math(EXPR CAMITK_TEST_ID "${CAMITK_TEST_ID} + 1")
+ set(CAMITK_TEST_NAME "${CAMITK_ADD_TEST_PROJECT_NAME}${CAMITK_ADD_TEST_TEST_SUFFIX}${CAMITK_TEST_ID}")
+ set(CAMITK_TEST_LIST ${CAMITK_TEST_LIST} ${CAMITK_TEST_NAME})
+ # message(STATUS "Configuring test ${CAMITK_TEST_NAME}")
+
+
+ # determine cmake macro path
+ if (NOT EXISTS SDK_TOP_LEVEL_SOURCE_DIR)
+ # this macro is called outside the sdk
+ set(CAMITK_CMAKE_MACRO_PATH ${CAMITK_CMAKE_DIR}/modules/macros/camitk/test)
+ if(NOT IS_DIRECTORY ${CAMITK_CMAKE_MACRO_PATH})
+ # inside opensource but not in sdk (modeling or imaging)
+ set(CAMITK_CMAKE_MACRO_PATH ${CMAKE_SOURCE_DIR}/sdk/cmake/modules/macros/camitk/test)
+ endif()
+ else()
+ # directly use the macro source dir
+ set(CAMITK_CMAKE_MACRO_PATH ${SDK_TOP_LEVEL_SOURCE_DIR}/cmake/modules/macros/camitk/test)
+ endif()
+
+ # create test output directory
+ set(CAMITK_TEST_OUTPUT_DIR "${CMAKE_BINARY_DIR}/Testing/Temporary/${CAMITK_TEST_NAME}")
+# message(STATUS "Creating test output dir ${CAMITK_TEST_OUTPUT_DIR}")
+ execute_process(COMMAND ${CMAKE_COMMAND} -E make_directory ${CAMITK_TEST_OUTPUT_DIR})
+
+ # check which test is to be done
+ if(CAMITK_ADD_TEST_PASS_FILE)
+ add_test(NAME ${CAMITK_TEST_NAME}
+ COMMAND ${CMAKE_COMMAND}
+ -DCAMITK_TEST_COMMAND=${CAMITK_INIT_TEST_EXECUTABLE}
+ -DCAMITK_TEST_COMMAND_ARG=${CAMITK_ADD_TEST_EXECUTABLE_ARGS}
+ -DCAMITK_TEST_PASS_FILE=${CAMITK_ADD_TEST_PASS_FILE}
+ -DCAMITK_TEST_OUTPUT_DIR=${CAMITK_TEST_OUTPUT_DIR}
+ -DCAMITK_TEST_NAME=${CAMITK_TEST_NAME}
+ -P ${CAMITK_CMAKE_MACRO_PATH}/CamiTKTestPassFile.cmake
+ )
+ elseif(CAMITK_ADD_TEST_PASS_FILE_OUTPUT)
+ add_test(NAME ${CAMITK_TEST_NAME}
+ COMMAND ${CMAKE_COMMAND}
+ -DCAMITK_TEST_COMMAND=${CAMITK_INIT_TEST_EXECUTABLE}
+ -DCAMITK_TEST_COMMAND_ARG=${CAMITK_ADD_TEST_EXECUTABLE_ARGS}
+ -DCAMITK_TEST_PASS_FILE=${CAMITK_ADD_TEST_PASS_FILE_OUTPUT}
+ -DCAMITK_TEST_OUTPUT_DIR=${CAMITK_TEST_OUTPUT_DIR}
+ -DCAMITK_TEST_NAME=${CAMITK_TEST_NAME}
+ -P ${CAMITK_CMAKE_MACRO_PATH}/CamiTKTestCompareFile.cmake
+ )
+ else()
+ # set output files for more advanced checking/debugging
+ set(CAMITK_TEST_COMMAND_FILE ${CAMITK_TEST_OUTPUT_DIR}/command) # which command is run to test the exectable
+ # cleanup
+ execute_process(COMMAND ${CMAKE_COMMAND} -E remove -f ${CAMITK_TEST_COMMAND_FILE} )
+ file(WRITE ${CAMITK_TEST_COMMAND_FILE} "Test command: ${CAMITK_INIT_TEST_EXECUTABLE} ${CAMITK_ADD_TEST_EXECUTABLE_ARGS}\nPASS_REGULAR_EXPRESSION: '${CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION}'\n")
+
+ if(CAMITK_ADD_TEST_EXECUTABLE_ARGS)
+ # expands all arguments
+ string(REPLACE " " ";" CAMITK_TEST_COMMAND_ARG_LIST ${CAMITK_ADD_TEST_EXECUTABLE_ARGS})
+ else()
+ set(CAMITK_TEST_COMMAND_ARG_LIST)
+ endif()
+
+ # add the simple test command
+ add_test(NAME ${CAMITK_TEST_NAME}
+ COMMAND ${CAMITK_INIT_TEST_EXECUTABLE} ${CAMITK_TEST_COMMAND_ARG_LIST}
+ )
+
+ # add properties if needed
+ if(CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION)
+ set_tests_properties(${CAMITK_TEST_NAME} PROPERTIES PASS_REGULAR_EXPRESSION ${CAMITK_ADD_TEST_PASS_REGULAR_EXPRESSION})
+ else()
+ if(CAMITK_ADD_TEST_FAIL_REGULAR_EXPRESSION)
+ set_tests_properties(${CAMITK_TEST_NAME} PROPERTIES FAIL_REGULAR_EXPRESSION ${CAMITK_ADD_TEST_FAIL_REGULAR_EXPRESSION})
+ endif()
+ endif()
+ endif()
+
+ # set the label for tests
+ if( CAMITK_ADD_TEST_PROJECT_NAME )
+ set_tests_properties( ${CAMITK_TEST_NAME} PROPERTIES LABELS ${CAMITK_ADD_TEST_PROJECT_NAME} )#associate tests to a project name in CDash
+ else()
+ set_tests_properties( ${CAMITK_TEST_NAME} PROPERTIES LABELS ${CAMITK_TEST_BASENAME} )
+ endif()
+
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/test/CamiTKInitTest.cmake b/sdk/cmake/modules/macros/camitk/test/CamiTKInitTest.cmake
new file mode 100644
index 0000000..7d5ef24
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/CamiTKInitTest.cmake
@@ -0,0 +1,77 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test
+#!
+#! camitk_init_test is a macro to initialize a group of test (for the same command)
+#! It is used to initialize a series of tests for a given target.
+#! Usually this is placed in the same CMakeLists.txt as the add_executable() cmake instruction or
+#! camitk_application() macro
+#!
+#! It does few useful things:
+#! - check if the application is properly defined
+#! - initialize test id (then automatically incremented in camitk_test_declare
+#! - initialize test output directory
+#!
+#! Usage:
+#! \code
+#! camitk_init_test(applicationname)
+#! \endcode
+#!
+#! \param applicationname (required) The name of the test application (in camitk context, name of the project
+#!
+#! Example invocation:
+#!
+#! \code
+#!
+#! camitk_application()
+#!
+#! ...
+#! # Start the test series for myprogram
+#! camitk_init_test(myprogram)
+#! camitk_add_test(...) # will be called myprogram1
+#! ...
+#! camitk_add_test(...) # myprogram2
+#!
+#! \endcode
+#
+#! @sa camitk_add_test
+macro(camitk_init_test)
+ parse_arguments(CAMITK_INIT_TEST
+ "" # possible lists
+ ""
+ ${ARGN}
+ )
+
+ set(CAMITK_TEST_ID "0")
+ set(CAMITK_TEST_LIST "")
+
+ # check for executable
+ if(NOT CAMITK_INIT_TEST_DEFAULT_ARGS)
+ message(FATAL_ERROR "Initializing test ${CAMITK_TEST_BASENAME} cannot proceed: please specify the target in brackets")
+ else()
+ if(NOT TARGET ${CAMITK_INIT_TEST_DEFAULT_ARGS})
+ message(FATAL_ERROR "Initializing test ${CAMITK_TEST_BASENAME} cannot proceed: ${CAMITK_INIT_TEST_DEFAULT_ARGS} is not a proper target")
+ endif()
+
+ # get the application real name using the target properties
+ get_target_property( APP_NAME ${CAMITK_INIT_TEST_DEFAULT_ARGS} OUTPUT_NAME )
+
+ # add debug postfix if needed by MSVC
+ set( APP_SUFFIX "" )
+ if(MSVC)
+ get_target_property( APP_SUFFIX ${CAMITK_INIT_TEST_DEFAULT_ARGS} DEBUG_POSTFIX )
+ endif()
+ endif()
+
+ # if there is an error, it might be that the macro is used with a non-camitk application, just use the default parameter as application name
+ if (APP_NAME STREQUAL "APP_NAME-NOTFOUND")
+ set(APP_NAME ${CAMITK_INIT_TEST_DEFAULT_ARGS})
+ # CAMITK_INIT_TEST_EXECUTABLE is not the application name but the full path to it
+ set(CAMITK_INIT_TEST_EXECUTABLE ${CMAKE_CURRENT_BINARY_DIR}/${APP_NAME}${APP_SUFFIX} )
+ else()
+ # CAMITK_INIT_TEST_EXECUTABLE is not the application name but the full path to the binary to be executed
+ set(CAMITK_INIT_TEST_EXECUTABLE ${CAMITK_BUILD_BIN_DIR}/${APP_NAME}${APP_SUFFIX} )
+ endif()
+
+ set(CAMITK_TEST_BASENAME ${CAMITK_INIT_TEST_DEFAULT_ARGS})
+ # message(STATUS "Initializing test series for ${CAMITK_TEST_BASENAME}")
+endmacro()
diff --git a/sdk/cmake/modules/macros/CamiTKTestCompareFile.cmake b/sdk/cmake/modules/macros/camitk/test/CamiTKTestCompareFile.cmake
similarity index 100%
rename from sdk/cmake/modules/macros/CamiTKTestCompareFile.cmake
rename to sdk/cmake/modules/macros/camitk/test/CamiTKTestCompareFile.cmake
diff --git a/sdk/cmake/modules/macros/CamiTKTestPassFile.cmake b/sdk/cmake/modules/macros/camitk/test/CamiTKTestPassFile.cmake
similarity index 100%
rename from sdk/cmake/modules/macros/CamiTKTestPassFile.cmake
rename to sdk/cmake/modules/macros/camitk/test/CamiTKTestPassFile.cmake
diff --git a/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAdd.cmake b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAdd.cmake
new file mode 100644
index 0000000..115fa25
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAdd.cmake
@@ -0,0 +1,42 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test_level
+#!
+#! macro camitk_parse_test_add adds an extension (action or component) automatic test level information
+#! Typically recursively call this function accross all actions and components to generate CamiTKTestsLevel.txt file.
+#!
+#! Usage:
+#! \code
+#! camitk_parse_test_add(NAME
+#! LEVEL
+#! DESCRIPTION
+#! )
+#! \endcode
+#!
+#! \param NAME The name of the test for the extension
+#! \param LEVEL The level of automatic test (between 0, 1, 2, 3)
+#! \param DESCRIPTION The description of the automatic test
+macro(camitk_parse_test_add)
+ parse_arguments(CAMITK_PARSE_TEST_ADD
+ "NAME;LEVEL;DESCRIPTION" # possible lists
+ "" #possible options
+ ${ARGN}
+ )
+
+ # Test required inputs have been given to the macro
+ if(NOT DEFINED CAMITK_PARSE_TEST_ADD_NAME)
+ message(FATAL_ERROR "camitk_parse_test_add: the name is required")
+ endif()
+ if(NOT DEFINED CAMITK_PARSE_TEST_ADD_LEVEL)
+ message(FATAL_ERROR "camitk_parse_test_add: the level is required")
+ endif()
+ if(NOT DEFINED CAMITK_PARSE_TEST_ADD_DESCRIPTION)
+ message(FATAL_ERROR "camitk_parse_test_add: the description is required")
+ endif()
+
+ # Store these information as a new entry of test level
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|- style=\"background-color: #EEEEEE\" \\n" CACHE INTERNAL "")
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "| style=\"width: 35%\" |${CAMITK_PARSE_TEST_ADD_NAME} \\n" CACHE INTERNAL "")
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "| style=\"width: 15%\" |'''${CAMITK_PARSE_TEST_ADD_LEVEL}''' \\n" CACHE INTERNAL "")
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|| ${CAMITK_PARSE_TEST_ADD_DESCRIPTION} \\n\\n" CACHE INTERNAL "")
+
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAddSeparator.cmake b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAddSeparator.cmake
new file mode 100644
index 0000000..c631769
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestAddSeparator.cmake
@@ -0,0 +1,24 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test_level
+#!
+#! macro camitk_parse_test_add_separator adds an extension (action or component) separator entry.
+#! Typically call this macro before calling any instance of camitk_parse_test_add()
+#!
+#! Usage:
+#! \code
+#! camitk_parse_test_add(EXTENSION_TYPE
+#! EXTENSION_NAME
+#! )
+#! \endcode
+#!
+#! \param EXTENSION_TYPE The type extension (action or component)
+#! \param EXTENSION_NAME The name the extension
+macro(camitk_parse_test_add_separator)
+ parse_arguments(CAMITK_PARSE_TEST_ADD_SEPARATOR
+ "EXTENSION_TYPE;EXTENSION_NAME" # possible lists
+ "" #possible options
+ ${ARGN}
+ )
+
+ set( CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|- style=\"background-color: #CCCCCC\" \\n || '''${CAMITK_PARSE_TEST_ADD_SEPARATOR_EXTENSION_TYPE} ${CAMITK_PARSE_TEST_ADD_SEPARATOR_EXTENSION_NAME}''' \\n" CACHE INTERNAL "")
+endmacro()
diff --git a/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestInit.cmake b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestInit.cmake
new file mode 100644
index 0000000..6a5416d
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestInit.cmake
@@ -0,0 +1,15 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test_level
+#!
+#! MACRO camitk_parse_test_init create a CMake variable to store all the automatically generated tests for action & component level information.
+#!
+#! usage:
+#! \code
+#! camitk_parse_test_init()
+#! \endcode
+macro(camitk_parse_test_init)
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL "{| class=\"wikitable\"{| style=\"background-color: #CCCCCC\" \\n" CACHE INTERNAL "")
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|+ List of automatically generated tests per extension (action and component) \\n" CACHE INTERNAL "")
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "! Component / Action Test Name !! Test Level !! Test Description \\n\\n" CACHE INTERNAL "")
+endmacro()
+
diff --git a/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestValidate.cmake b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestValidate.cmake
new file mode 100644
index 0000000..bb80473
--- /dev/null
+++ b/sdk/cmake/modules/macros/camitk/test/level/CamiTKParseTestValidate.cmake
@@ -0,0 +1,23 @@
+#!
+#! @ingroup group_sdk_cmake_camitk_test_level
+#!
+#! macro camitk_parse_test_validate generate the CamiTKTestsLevel.txt file which contains the CamiTK wiki entries (store in a tab) which describes for all CamiTK actions & components the different level of tests
+#!
+#! Usage:
+#! \code
+#! camitk_parse_test_add()
+#! \endcode
+
+macro(camitk_parse_test_validate)
+ # Close the wiki tab
+ set(CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL} "|}" CACHE INTERNAL "")
+
+ # Write down the CamiTKTestsLevel.txt file
+ set(filename "${CMAKE_BINARY_DIR}/CamiTKTestsLevel.txt")
+ string(REPLACE "\\n" "\n" CAMITK_EXTENSIONS_TESTS_LEVEL ${CAMITK_EXTENSIONS_TESTS_LEVEL})
+ file(WRITE ${filename} ${CAMITK_EXTENSIONS_TESTS_LEVEL})
+ message(STATUS "Generated ${filename} for tests level description")
+
+
+endmacro()
+
diff --git a/sdk/components/msh/CMakeLists.txt b/sdk/components/msh/CMakeLists.txt
index a722daf..84a6126 100644
--- a/sdk/components/msh/CMakeLists.txt
+++ b/sdk/components/msh/CMakeLists.txt
@@ -2,8 +2,9 @@
camitk_extension( COMPONENT_EXTENSION
CEP_NAME SDK
DESCRIPTION "Support for .msh files"
+ DEFINES COMPILE_MSH_COMPONENT_API
TEST_APPLICATION ${APPLICATION_TEST_COMPONENT}
- HEADERS_TO_INSTALL MshComponent.h MshExtension.h
+ HEADERS_TO_INSTALL MshComponent.h MshExtension.h MshComponentAPI.h
DISABLE_TESTLEVEL3
)
diff --git a/sdk/components/msh/MshComponent.cpp b/sdk/components/msh/MshComponent.cpp
index 117c18c..a29216f 100644
--- a/sdk/components/msh/MshComponent.cpp
+++ b/sdk/components/msh/MshComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -156,8 +156,6 @@ void MshComponent::readLegacyFormat ( std::ifstream& fileStream ) {
nbCells++;
}
- mesh->Update();
-
// instanciate the Geometry
initRepresentation ( mesh );
@@ -269,8 +267,6 @@ void MshComponent::readV2Format ( std::ifstream& fileStream ) {
nbCells++;
}
- mesh->Update();
-
// get physical names
while ( std::getline ( fileStream, line ) ) {
if ( ( !line.compare ( "$PhysicalNames" ) ) || ( !line.compare ( "$PhysicalNames\r" ) ) )
@@ -297,19 +293,19 @@ void MshComponent::readV2Format ( std::ifstream& fileStream ) {
}
// add the physical regions
-
- std::map< int, std::pair< std::string, std::vector< int > > >::iterator it;
-
- for ( it=physicalRegions.begin(); it!=physicalRegions.end(); it++ ) {
- QString phyName = it->second.first.c_str();
- phyName.replace(QString("\""), QString(""));
- addSelection (phyName , vtkSelectionNode::CELL, vtkSelectionNode::INDICES );
- vtkSmartPointer<vtkIdTypeArray> ids = vtkSmartPointer<vtkIdTypeArray>::New();
- for ( int i=0; i<it->second.second.size(); i++ )
- ids->InsertNextValue ( it->second.second[i] );
- addToSelection(phyName, ids);
- }
-
+ /*
+ std::map< int, std::pair< std::string, std::vector< int > > >::iterator it;
+
+ for ( it=physicalRegions.begin(); it!=physicalRegions.end(); it++ ) {
+ QString phyName = it->second.first.c_str();
+ phyName.replace(QString("\""), QString(""));
+ addSelection (phyName , vtkSelectionNode::CELL, vtkSelectionNode::INDICES );
+ vtkSmartPointer<vtkIdTypeArray> ids = vtkSmartPointer<vtkIdTypeArray>::New();
+ for ( int i=0; i<it->second.second.size(); i++ )
+ ids->InsertNextValue ( it->second.second[i] );
+ addToSelection(phyName, ids);
+ }
+ */
// instanciate the Geometry
initRepresentation ( mesh );
diff --git a/sdk/components/msh/MshComponent.h b/sdk/components/msh/MshComponent.h
index 65e86d3..e9be0d7 100644
--- a/sdk/components/msh/MshComponent.h
+++ b/sdk/components/msh/MshComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,6 +27,7 @@
#define MSH_COMPONENT_H
#include <MeshComponent.h>
+#include "MshComponentAPI.h"
/**
* @ingroup group_sdk_components_msh
@@ -38,7 +39,7 @@
* www.geuz.org/gmsh/doc/texinfo/gmsh.html for more information about this format
*
**/
-class MshComponent : public camitk::MeshComponent {
+class MSH_COMPONENT_API MshComponent : public camitk::MeshComponent {
Q_OBJECT
diff --git a/sdk/components/msh/MshComponentAPI.h b/sdk/components/msh/MshComponentAPI.h
new file mode 100644
index 0000000..643107d
--- /dev/null
+++ b/sdk/components/msh/MshComponentAPI.h
@@ -0,0 +1,60 @@
+/*****************************************************************************
+* $CAMITK_LICENCE_BEGIN$
+*
+* CamiTK - Computer Assisted Medical Intervention ToolKit
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+*
+* Visit http://camitk.imag.fr for more information
+*
+* This file is part of CamiTK.
+*
+* CamiTK is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Lesser General Public License version 3
+* only, as published by the Free Software Foundation.
+*
+* CamiTK is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU Lesser General Public License version 3 for more details.
+*
+* You should have received a copy of the GNU Lesser General Public License
+* version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+*
+* $CAMITK_LICENCE_END$
+****************************************************************************/
+
+// ----- MSH_COMPONENT_API.h
+#ifndef MSH_COMPONENT_API_H
+#define MSH_COMPONENT_API_H
+
+// -----------------------------------------------------------------------
+//
+// MSH_COMPONENT_API
+//
+// -----------------------------------------------------------------------
+
+// The following ifdef block is the standard way of creating macros which make exporting
+// from a DLL simpler. All files within this DLL are compiled with the COMPILE_MSH_COMPONENT_API
+// flag defined on the command line. this symbol should not be defined on any project
+// that uses this DLL. This way any other project whose source files include this file see
+// MSH_COMPONENT_API functions as being imported from a DLL, wheras this DLL sees symbols
+// defined with this macro as being exported.
+
+#if defined(_WIN32) // MSVC and mingw
+
+#ifdef COMPILE_MSH_COMPONENT_API
+#define MSH_COMPONENT_API __declspec(dllexport)
+#else
+#define MSH_COMPONENT_API __declspec(dllimport)
+#endif // COMPILE_MSH_COMPONENT_API
+
+#else // for all other platforms MSH_COMPONENT_API is defined to be "nothing"
+
+#ifndef MSH_COMPONENT_API
+#define MSH_COMPONENT_API
+#endif // MSH_COMPONENT_API
+
+#endif // MSVC and mingw
+
+#endif // MSH_COMPONENT_API_H
+
diff --git a/sdk/components/msh/MshExtension.cpp b/sdk/components/msh/MshExtension.cpp
index 9584f79..5f5c9bb 100644
--- a/sdk/components/msh/MshExtension.cpp
+++ b/sdk/components/msh/MshExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,10 +39,6 @@
#include <Application.h>
using namespace camitk;
-// declare the plugin
-Q_EXPORT_PLUGIN2 ( MshExtension, MshExtension )
-
-
QString MshExtension::getName() const {
return "Msh Component";
}
@@ -62,21 +58,15 @@ Component * MshExtension::open ( const QString & fileName ) throw ( AbortExcepti
}
bool MshExtension::save ( Component* component ) const {
- bool saveOk = true;
- bool found = true;
-
- vtkSmartPointer<vtkPointSet> ps = component->getPointSet();
+ MeshComponent *meshComp = dynamic_cast<MeshComponent*>(component);
+ vtkSmartPointer<vtkPointSet> ps = meshComp->getPointSet();
if ( ps == NULL || ps->GetNumberOfPoints() ==0 || ps->GetNumberOfCells() == 0 ) {
QMessageBox::warning ( NULL, "Save As msh", tr("The selected component does not have any points or cells. This is an invalid mesh."), QMessageBox::Abort );
return false;
}
- QString baseFilename = QFileInfo ( component->getFileName() ).absolutePath() + "/" + QFileInfo ( component->getFileName() ).completeBaseName();
-
- QString mshFilename = baseFilename + ".msh";
-
- ofstream mshFile ( mshFilename.toUtf8() );
+ ofstream mshFile ( meshComp->getFileName().toStdString().c_str() );
double xyz[3];
mshFile << "$NOD" << endl;
mshFile << ps->GetPoints()->GetNumberOfPoints() << endl;
@@ -86,10 +76,18 @@ bool MshExtension::save ( Component* component ) const {
}
mshFile << "$ENDNOD" << endl;
mshFile << "$ELM" << endl;
- mshFile << ps->GetNumberOfCells() << endl;
+ // compute the number of cells, removing the unsupported types
+ unsigned int numberOfExportedCells = 0;
+ for ( vtkIdType i = 0; i < ps->GetNumberOfCells() ; i++ ) {
+ int cellType = ps->GetCell(i)->GetCellType();
+ if (cellType==VTK_LINE || cellType==VTK_TETRA || cellType==VTK_HEXAHEDRON || cellType==VTK_WEDGE || cellType==VTK_PYRAMID || cellType==VTK_TRIANGLE || cellType==VTK_QUAD)
+ numberOfExportedCells++;
+ }
+
+ mshFile << numberOfExportedCells << endl;
for ( vtkIdType i = 0; i < ps->GetNumberOfCells() ; i++ ) {
- found = true;
+ bool supportedType = true;
switch ( ps->GetCell ( i )->GetCellType() ) {
case VTK_LINE :
mshFile << i + 1 << " 1 1 1 2";
@@ -113,12 +111,11 @@ bool MshExtension::save ( Component* component ) const {
mshFile << i + 1 << " 3 1 1 4";
break;
default:
- saveOk = false;
- found = false;
- CAMITK_ERROR ( "VolumetricMeshExtension", "save", "unsupported element" );
+ supportedType = false;
+ CAMITK_WARNING ( "MshExtension", "save", "Unsupported element for cell #" << i << ": type = " << ps->GetCell ( i )->GetCellType() << " (this cell was not exported to msh)");
break;
}
- if ( found ) {
+ if (supportedType) {
for ( vtkIdType j=0; j<ps->GetCell ( i )->GetNumberOfPoints(); j++ )
mshFile << " " << ps->GetCell ( i )->GetPointId ( j ) + 1;
mshFile << endl;
@@ -128,5 +125,5 @@ bool MshExtension::save ( Component* component ) const {
mshFile << "$ENDELM" << endl;
mshFile.close();
- return saveOk;
+ return true;
}
diff --git a/sdk/components/msh/MshExtension.h b/sdk/components/msh/MshExtension.h
index 06b7bc1..46a0248 100644
--- a/sdk/components/msh/MshExtension.h
+++ b/sdk/components/msh/MshExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -44,10 +44,11 @@ class MshExtension : public camitk::MeshComponentExtension {
Q_OBJECT
Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.msh")
public:
/// the constructor (do nothing really)
- MshExtension() : MeshComponentExtension() {};
+ MshExtension() : MeshComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/sdk/components/obj/ObjComponent.cpp b/sdk/components/obj/ObjComponent.cpp
index 0160f4d..2e30eb8 100644
--- a/sdk/components/obj/ObjComponent.cpp
+++ b/sdk/components/obj/ObjComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/obj/ObjComponent.h b/sdk/components/obj/ObjComponent.h
index eff0558..d094c1c 100644
--- a/sdk/components/obj/ObjComponent.h
+++ b/sdk/components/obj/ObjComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/obj/ObjExtension.cpp b/sdk/components/obj/ObjExtension.cpp
index 1791b90..0cb7edd 100644
--- a/sdk/components/obj/ObjExtension.cpp
+++ b/sdk/components/obj/ObjExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
-* (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,9 +35,6 @@
#include <vtkCell.h>
#include <vtkCleanPolyData.h>
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2(ObjExtension, ObjExtension);
-
// --------------- getName -------------------
QString ObjExtension::getName() const {
return "Alias Wavefront OBJ Component";
@@ -75,7 +72,7 @@ bool ObjExtension::save(camitk::Component* component) const {
vtkSmartPointer< vtkTriangleFilter > triangleFilter = vtkSmartPointer< vtkTriangleFilter >::New();
// first we apply a geometry filter to keep only polygonal cells
- geoFilter->SetInput(component->getPointSet());
+ geoFilter->SetInputData(component->getPointSet());
// then a triangle filter to transform the polygones in triangles
triangleFilter->SetInputConnection(geoFilter->GetOutputPort());
triangleFilter->PassLinesOff();
@@ -87,7 +84,7 @@ bool ObjExtension::save(camitk::Component* component) const {
vtkSmartPointer<vtkCleanPolyData> cleanFilter = vtkSmartPointer<vtkCleanPolyData>::New();
//do a vtkCleanPolyData to merge duplicate points created by the triangleFilter operation
- cleanFilter->SetInput(poly);
+ cleanFilter->SetInputData(poly);
cleanFilter->Update();
ofstream objFile(fileName.toUtf8());
diff --git a/sdk/components/obj/ObjExtension.h b/sdk/components/obj/ObjExtension.h
index f547bd0..2b7894b 100644
--- a/sdk/components/obj/ObjExtension.h
+++ b/sdk/components/obj/ObjExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,11 +38,12 @@
**/
class ObjExtension : public camitk::MeshComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.obj")
public:
/// the constructor (do nothing really)
- ObjExtension() : MeshComponentExtension() {};
+ ObjExtension() : MeshComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/sdk/components/off/OffComponent.cpp b/sdk/components/off/OffComponent.cpp
index 54822f2..fae8956 100644
--- a/sdk/components/off/OffComponent.cpp
+++ b/sdk/components/off/OffComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -111,8 +111,6 @@ OffComponent::OffComponent(const QString & file) throw(AbortException) : MeshCom
offMesh->SetPolys(polys);
- offMesh->Update();
-
// instanciate the Geometry
initRepresentation(offMesh);
diff --git a/sdk/components/off/OffComponent.h b/sdk/components/off/OffComponent.h
index b24b8b5..95d1dd2 100644
--- a/sdk/components/off/OffComponent.h
+++ b/sdk/components/off/OffComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/off/OffExtension.cpp b/sdk/components/off/OffExtension.cpp
index a4d5fe5..a1bc040 100644
--- a/sdk/components/off/OffExtension.cpp
+++ b/sdk/components/off/OffExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,10 +39,6 @@
#include <Application.h>
using namespace camitk;
-// declare the plugin
-Q_EXPORT_PLUGIN2(OffExtension, OffExtension);
-
-
QString OffExtension::getName() const {
return "Off Component";
}
diff --git a/sdk/components/off/OffExtension.h b/sdk/components/off/OffExtension.h
index bfa8293..ef5e183 100644
--- a/sdk/components/off/OffExtension.h
+++ b/sdk/components/off/OffExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,11 +39,12 @@
class OffExtension : public camitk::MeshComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.off")
public:
/// the constructor (do nothing really)
- OffExtension() : MeshComponentExtension() {};
+ OffExtension() : MeshComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/sdk/components/stl/StlComponent.cpp b/sdk/components/stl/StlComponent.cpp
index 71ebcf7..b33407d 100644
--- a/sdk/components/stl/StlComponent.cpp
+++ b/sdk/components/stl/StlComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/stl/StlComponent.h b/sdk/components/stl/StlComponent.h
index f4c20ac..95ee9c4 100644
--- a/sdk/components/stl/StlComponent.h
+++ b/sdk/components/stl/StlComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/stl/StlExtension.cpp b/sdk/components/stl/StlExtension.cpp
index 8246f3f..7bb5d7a 100644
--- a/sdk/components/stl/StlExtension.cpp
+++ b/sdk/components/stl/StlExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,9 +31,6 @@
using namespace camitk;
-// --------------- Extension Declaration -------------------
-Q_EXPORT_PLUGIN2(componentextensionexample, StlExtension)
-
// --------------- getName -------------------
QString StlExtension::getName() const {
return "STL Component";
diff --git a/sdk/components/stl/StlExtension.h b/sdk/components/stl/StlExtension.h
index 38be7a3..e53f34c 100644
--- a/sdk/components/stl/StlExtension.h
+++ b/sdk/components/stl/StlExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -38,11 +38,12 @@
*/
class StlExtension : public camitk::ComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.stl")
public:
/// Constructor
- StlExtension() : ComponentExtension() {};
+ StlExtension() : ComponentExtension() {}
/// Method returning the component extension name
virtual QString getName() const;
@@ -68,7 +69,7 @@ public:
protected:
/// Destructor
- virtual ~StlExtension() {};
+ virtual ~StlExtension() {}
};
diff --git a/sdk/components/vrml/VRMLComponent.cpp b/sdk/components/vrml/VRMLComponent.cpp
index 8ab1d00..f3da805 100644
--- a/sdk/components/vrml/VRMLComponent.cpp
+++ b/sdk/components/vrml/VRMLComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -55,7 +55,6 @@ VRMLComponent::VRMLComponent(const QString & file) throw(AbortException) : Compo
vtkSmartPointer<vtkActor> actor = vtkActor::SafeDownCast(actors->GetItemAsObject(i));
if (actor) {
vtkSmartPointer<vtkPointSet> ps = vtkPointSet::SafeDownCast(actor->GetMapper()->GetInput());
- ps->Update();
importer->Update();
if (ps) {
new MeshComponent(this, ps, QString("VRML object #") + QString::number(actors->GetNumberOfItems() - i - 1));
diff --git a/sdk/components/vrml/VRMLComponent.h b/sdk/components/vrml/VRMLComponent.h
index f2977bd..fa5019d 100644
--- a/sdk/components/vrml/VRMLComponent.h
+++ b/sdk/components/vrml/VRMLComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vrml/VRMLComponentExtension.cpp b/sdk/components/vrml/VRMLComponentExtension.cpp
index 144c295..b401b3a 100644
--- a/sdk/components/vrml/VRMLComponentExtension.cpp
+++ b/sdk/components/vrml/VRMLComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -25,9 +25,6 @@
#include "VRMLComponentExtension.h"
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2(vrml, VRMLComponentExtension);
-
#include "VRMLComponent.h"
//-- CamiTK stuff
diff --git a/sdk/components/vrml/VRMLComponentExtension.h b/sdk/components/vrml/VRMLComponentExtension.h
index 3cbb38c..5dea4b4 100644
--- a/sdk/components/vrml/VRMLComponentExtension.h
+++ b/sdk/components/vrml/VRMLComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -47,11 +47,12 @@
**/
class VRMLComponentExtension : public camitk::MeshComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.vrml")
public:
/// the constructor (do nothing really)
- VRMLComponentExtension() : MeshComponentExtension() {};
+ VRMLComponentExtension() : MeshComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
diff --git a/sdk/components/vtkimage/RawDataDialog.cpp b/sdk/components/vtkimage/RawDataDialog.cpp
index 2c8741b..430ef36 100644
--- a/sdk/components/vtkimage/RawDataDialog.cpp
+++ b/sdk/components/vtkimage/RawDataDialog.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/RawDataDialog.h b/sdk/components/vtkimage/RawDataDialog.h
index 89fa943..75f9e39 100644
--- a/sdk/components/vtkimage/RawDataDialog.h
+++ b/sdk/components/vtkimage/RawDataDialog.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/RawImageComponent.cpp b/sdk/components/vtkimage/RawImageComponent.cpp
index 6e6d06e..13409be 100644
--- a/sdk/components/vtkimage/RawImageComponent.cpp
+++ b/sdk/components/vtkimage/RawImageComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/RawImageComponent.h b/sdk/components/vtkimage/RawImageComponent.h
index da47c6d..4446955 100644
--- a/sdk/components/vtkimage/RawImageComponent.h
+++ b/sdk/components/vtkimage/RawImageComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/VtkImageComponent.cpp b/sdk/components/vtkimage/VtkImageComponent.cpp
index d85c93f..360409b 100644
--- a/sdk/components/vtkimage/VtkImageComponent.cpp
+++ b/sdk/components/vtkimage/VtkImageComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -101,12 +101,15 @@ void VtkImageComponent::createComponent(const QString& filename) {
// Get the image orientation & rotation when possible
ImageOrientationHelper::PossibleImageOrientations orientation = ImageOrientationHelper::RAI;
vtkSmartPointer<vtkMatrix4x4> rotationMatrix;
- if(vtkSmartPointer<vtkMetaImageReader> metaImageReader = vtkMetaImageReader::SafeDownCast(reader)){
+ if(vtkSmartPointer<vtkMetaImageReader> metaImageReader = vtkMetaImageReader::SafeDownCast(reader)) {
orientation = ImageOrientationHelper::getOrientationAsEnum(QString(metaImageReader->GetAnatomicalOrientation()));
rotationMatrix = readMetaImageTransformMatrix(filename);
}
setImageData(image, false, orientation, rotationMatrix);
+
+ image = NULL;
+ reader = NULL;
}
catch (AbortException e) {
@@ -116,23 +119,23 @@ void VtkImageComponent::createComponent(const QString& filename) {
}
// -------------------- readMetaImageTransformMatrix --------------------
-vtkSmartPointer<vtkMatrix4x4> VtkImageComponent::readMetaImageTransformMatrix(const QString & fileName){
+vtkSmartPointer<vtkMatrix4x4> VtkImageComponent::readMetaImageTransformMatrix(const QString & fileName) {
QFile file(fileName);
if (!file.open(QIODevice::ReadOnly | QIODevice::Text))
CAMITK_ERROR("VtkImageComponent", "readMetaImageTransformMatrix", "Error reading TransformMatrix tag from image " + fileName.toStdString())
- QTextStream in(&file);
+ QTextStream in(&file);
QString line = in.readLine();
while (!line.isNull()) {
// Find lind feature TransformMatrix tag information
QRegExp regExp = QRegExp("TransformMatrix = ([-+]?[0-9]*\\.?[0-9]+([eE][-+]?[0-9]+)?[ |\\n])+");
- if(line.contains(regExp)){ // found it !
+ if(line.contains(regExp)) { // found it !
// retrieve information
QStringList values = line.split(" ");
- vtkSmartPointer<vtkMatrix4x4> rotationMatrix = vtkMatrix4x4::New();
- for(int j=0; j < 3; j++){
- for(int i=0; i < 3; i++){
+ vtkSmartPointer<vtkMatrix4x4> rotationMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
+ for(int j=0; j < 3; j++) {
+ for(int i=0; i < 3; i++) {
rotationMatrix->SetElement(i, j, values.at(j*3 + i + 2).toDouble());
}
std::cout << std::endl;
diff --git a/sdk/components/vtkimage/VtkImageComponent.h b/sdk/components/vtkimage/VtkImageComponent.h
index 0452564..1a026ab 100644
--- a/sdk/components/vtkimage/VtkImageComponent.h
+++ b/sdk/components/vtkimage/VtkImageComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/VtkImageComponentAPI.h b/sdk/components/vtkimage/VtkImageComponentAPI.h
index b880891..e7b6148 100644
--- a/sdk/components/vtkimage/VtkImageComponentAPI.h
+++ b/sdk/components/vtkimage/VtkImageComponentAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkimage/VtkImageComponentExtension.cpp b/sdk/components/vtkimage/VtkImageComponentExtension.cpp
index 6787d88..140e3cb 100644
--- a/sdk/components/vtkimage/VtkImageComponentExtension.cpp
+++ b/sdk/components/vtkimage/VtkImageComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,10 +43,8 @@ using namespace camitk;
#include <vtkBMPWriter.h>
#include <vtkPNMWriter.h>
#include <vtkMetaImageWriter.h>
-
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2(vtkimage, VtkImageComponentExtension)
-
+#include <vtkImageShiftScale.h>
+#include <vtkType.h>
// --------------- getName -------------------
QString VtkImageComponentExtension::getName() const {
@@ -88,9 +86,10 @@ bool VtkImageComponentExtension::save(Component* component) const {
else {
QFileInfo fileInfo(component->getFileName());
- vtkSmartPointer<vtkImageData> image = img->getImageData();
+ vtkSmartPointer<vtkImageData> image; //img->getImageDataWithFrameTransform();
if (fileInfo.completeSuffix() == "raw") {
+ image = img->getImageDataWithFrameTransform();
//-- save as raw
// vtk writer
vtkSmartPointer<vtkImageWriter> writer;
@@ -99,7 +98,7 @@ bool VtkImageComponentExtension::save(Component* component) const {
writer = vtkSmartPointer<vtkImageWriter>::New();
writer->SetFileDimensionality(3);
writer->SetFileName(fileInfo.absoluteFilePath().toStdString().c_str());
- writer->SetInput(image);
+ writer->SetInputData(image);
try {
writer->Write();
@@ -125,17 +124,60 @@ bool VtkImageComponentExtension::save(Component* component) const {
infoFile.close();
return true;
} else {
+ image = img->getImageData(); //img->getImageDataWithFrameTransform();
+
//-- save as vtk image
// vtk writer
vtkSmartPointer<vtkImageWriter> writer;
// filename extension
- QString fileExt = fileInfo.completeSuffix();
+ QString fileExt = fileInfo.suffix();
// filename prefix (for 2D image series)
- QString filePattern = fileInfo.absoluteDir().absolutePath() + fileInfo.baseName();
+ QString filePattern = fileInfo.absoluteDir().absolutePath() + "/" + fileInfo.baseName();
filePattern.append("_%04u.").append(fileExt);
+ // for any file format, image should be unsigned char casted (see vtk image writers doc).
+ // to cast an image into another scalar type, use vtkImageShiftScale instead of vtkImageCast (see doc).
+ vtkSmartPointer<vtkImageShiftScale> castFilter = vtkSmartPointer<vtkImageShiftScale>::New();
+ // get image scalar range
+ double *imgRange = image->GetScalarRange();
+ double scalarTypeMin = imgRange[0];
+ double scalarTypeMax = imgRange[1];
+
+ // shift according to the (un)signed type of the scalar
+ int scalarType = image->GetScalarType();
+ switch (scalarType) {
+ case VTK_CHAR:
+ case VTK_SIGNED_CHAR:
+ case VTK_SHORT:
+ case VTK_INT:
+ case VTK_LONG:
+ case VTK_FLOAT:
+ case VTK_DOUBLE: {
+ // shift only for signed scalar types
+ double shift = (scalarTypeMax - scalarTypeMin) / 2;
+ castFilter->SetShift(shift);
+ }
+ break;
+ case VTK_UNSIGNED_CHAR:
+ case VTK_UNSIGNED_SHORT:
+ case VTK_UNSIGNED_INT:
+ case VTK_UNSIGNED_LONG:
+ default:
+ // do not shift, only scale
+ break;
+ }
+
+ // scale
+ double scale = (double) 255.0 / (scalarTypeMax - scalarTypeMin);
+ castFilter->SetScale(scale);
+
+ // convert to unsigned char
+ castFilter->SetOutputScalarTypeToUnsignedChar();
+ castFilter->SetInputData(image);
+ castFilter->Update();
+
// Writer initialization, depending on file extension
if (QString::compare(fileExt, "jpg", Qt::CaseInsensitive) == 0) {
writer = vtkSmartPointer<vtkJPEGWriter>::New();
@@ -166,15 +208,17 @@ bool VtkImageComponentExtension::save(Component* component) const {
return false;
}
- if (writer) {
- if ((image->GetDataDimension() == 2 ) ||
- (QString::compare(fileExt, "mhd", Qt::CaseInsensitive) == 0) ||
- (QString::compare(fileExt, "mha", Qt::CaseInsensitive) == 0))
- writer->SetFileName(fileInfo.absoluteFilePath().toStdString().c_str());
- else
- writer->SetFilePattern(filePattern.toStdString().c_str());
-
- writer->SetInput(image);
+ if (writer) {
+ if ((image->GetDataDimension() == 2) ||
+ (QString::compare(fileExt, "mhd", Qt::CaseInsensitive) == 0) ||
+ (QString::compare(fileExt, "mha", Qt::CaseInsensitive) == 0)) {
+ writer->SetFileName(fileInfo.absoluteFilePath().toStdString().c_str());
+ } else {
+ writer->SetFilePattern(filePattern.toStdString().c_str());
+ }
+
+ // we save the unsigned char casted image
+ writer->SetInputConnection(castFilter->GetOutputPort());
writer->Write();
// Save image orientation for compatible header (as it is not possible to store it either in
@@ -191,19 +235,8 @@ bool VtkImageComponentExtension::save(Component* component) const {
// Store anatomical orientation in header
text.replace(QString("AnatomicalOrientation = ???"), QString("AnatomicalOrientation = ") + ImageOrientationHelper::getOrientationAsQString(img->getInitialOrientation()));
- // Retrieve orientation information
- vtkSmartPointer<vtkMatrix4x4> rotationMatrix = img->getRotationMatrix();
- QString rotationInfo = "TransformMatrix = ";
- for(int j=0; j < 3; j++){
- for(int i=0; i < 3; i++){
- rotationInfo += QString::number(rotationMatrix->GetElement(i, j)) + " ";
- }
- }
- rotationInfo += "\n";
- text.replace(QRegExp("TransformMatrix = (([-+]?(?:\\b[0-9]+(?:\\.[0-9]*)?|\\.[0-9]+\\b)(?:[eE][-+]?[0-9]+\\b)?)[ |\\n])+"), rotationInfo);
-
file.seek(0); // go to the beginning of the file
- file.write(text.toAscii()); // write back the file, in ASCII to preserve data format
+ file.write(text.toLatin1()); // write back the file, in ASCII to preserve data format
file.close(); // close the file handle.
}
diff --git a/sdk/components/vtkimage/VtkImageComponentExtension.h b/sdk/components/vtkimage/VtkImageComponentExtension.h
index 91861d3..c18e260 100644
--- a/sdk/components/vtkimage/VtkImageComponentExtension.h
+++ b/sdk/components/vtkimage/VtkImageComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -37,11 +37,12 @@
**/
class VtkImageComponentExtension : public camitk::ImageComponentExtension {
Q_OBJECT
- Q_INTERFACES(camitk::ComponentExtension);
+ Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.vtkimage")
public:
/// the constructor (do nothing really)
- VtkImageComponentExtension() : ImageComponentExtension() {};
+ VtkImageComponentExtension() : ImageComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
@@ -62,7 +63,7 @@ public:
protected:
/// the destructor
- virtual ~VtkImageComponentExtension() {};
+ virtual ~VtkImageComponentExtension() {}
};
#endif // VTK_IMAGE_COMPONENT_EXTENSION_H
diff --git a/sdk/components/vtkmesh/VtkMeshComponent.cpp b/sdk/components/vtkmesh/VtkMeshComponent.cpp
index 6415b14..3a8d18e 100644
--- a/sdk/components/vtkmesh/VtkMeshComponent.cpp
+++ b/sdk/components/vtkmesh/VtkMeshComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -135,7 +135,6 @@ void VtkMeshComponent::showPointData(VTK_COMPONENT_POINT_DATA_TYPE type) {
myGeometry->getPointSet()->GetPointData()->ShallowCopy(initialPointData);
if (initialPointData->GetNumberOfArrays() > 0) {
double range[2];
- myGeometry->getPointSet()->Update(); // force vtk to compute the range
myGeometry->getPointSet()->GetPointData()->GetScalars()->GetRange ( range );
InteractiveViewer::get3DViewer()->setColorScaleMinMax ( range[0], range[1] );
InteractiveViewer::get3DViewer()->setColorScaleTitle("VTK Point Data");
@@ -158,16 +157,16 @@ bool VtkMeshComponent::exportMDL ( std::string filename ) {
//extract external surface
vtkSmartPointer<vtkGeometryFilter> geomF = vtkSmartPointer<vtkGeometryFilter>::New();
- geomF->SetInput(getPointSet());
+ geomF->SetInputData(getPointSet());
// triangles
vtkSmartPointer<vtkTriangleFilter> triangleF = vtkSmartPointer<vtkTriangleFilter>::New();
- triangleF->SetInput(geomF->GetOutput());
+ triangleF->SetInputData(geomF->GetOutput());
// clean unused
vtkSmartPointer<vtkCleanPolyData> cleaner = vtkSmartPointer<vtkCleanPolyData>::New();
- cleaner->SetInput(triangleF->GetOutput());
+ cleaner->SetInputData(triangleF->GetOutput());
cleaner->Update();
vtkSmartPointer<vtkPolyData> ds = cleaner->GetOutput();
@@ -210,8 +209,8 @@ bool VtkMeshComponent::exportMDL ( std::string filename ) {
}
} else {
// compute the normals
- vtkPolyDataNormals * pNormals = vtkPolyDataNormals::New();
- pNormals->SetInput ( ds );
+ vtkSmartPointer<vtkPolyDataNormals> pNormals = vtkSmartPointer<vtkPolyDataNormals>::New();
+ pNormals->SetInputData( ds );
pNormals->Update();
o << pNormals->GetOutput()->GetPointData()->GetNormals()->GetNumberOfTuples() << std::endl;
diff --git a/sdk/components/vtkmesh/VtkMeshComponent.h b/sdk/components/vtkmesh/VtkMeshComponent.h
index c47ad33..0f63e5e 100644
--- a/sdk/components/vtkmesh/VtkMeshComponent.h
+++ b/sdk/components/vtkmesh/VtkMeshComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkmesh/VtkMeshComponentAPI.h b/sdk/components/vtkmesh/VtkMeshComponentAPI.h
index 62db4f3..02fdbc0 100644
--- a/sdk/components/vtkmesh/VtkMeshComponentAPI.h
+++ b/sdk/components/vtkmesh/VtkMeshComponentAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/components/vtkmesh/VtkMeshComponentExtension.cpp b/sdk/components/vtkmesh/VtkMeshComponentExtension.cpp
index 9d7273f..2f56254 100644
--- a/sdk/components/vtkmesh/VtkMeshComponentExtension.cpp
+++ b/sdk/components/vtkmesh/VtkMeshComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,9 +28,6 @@
using namespace camitk;
-// --------------- declare the plugin -------------------
-Q_EXPORT_PLUGIN2(vtk, VtkMeshComponentExtension)
-
// --------------- getName -------------------
QString VtkMeshComponentExtension::getName() const {
return "VTK Component";
diff --git a/sdk/components/vtkmesh/VtkMeshComponentExtension.h b/sdk/components/vtkmesh/VtkMeshComponentExtension.h
index 9f4781b..0f83e40 100644
--- a/sdk/components/vtkmesh/VtkMeshComponentExtension.h
+++ b/sdk/components/vtkmesh/VtkMeshComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -39,10 +39,11 @@
class VtkMeshComponentExtension : public camitk::MeshComponentExtension {
Q_OBJECT
Q_INTERFACES(camitk::ComponentExtension)
+ Q_PLUGIN_METADATA(IID "fr.imag.camitk.sdk.component.vtkmesh")
public:
/// the constructor (do nothing really)
- VtkMeshComponentExtension() : MeshComponentExtension() {};
+ VtkMeshComponentExtension() : MeshComponentExtension() {}
/// get the plugin name
virtual QString getName() const;
@@ -64,7 +65,7 @@ public:
protected:
/// the destructor
- virtual ~VtkMeshComponentExtension() {};
+ virtual ~VtkMeshComponentExtension() {}
};
#endif
diff --git a/sdk/components/vtkmesh/VtkMeshUtil.cpp b/sdk/components/vtkmesh/VtkMeshUtil.cpp
index 79a11da..4dc97aa 100644
--- a/sdk/components/vtkmesh/VtkMeshUtil.cpp
+++ b/sdk/components/vtkmesh/VtkMeshUtil.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -132,7 +132,7 @@ bool VtkMeshUtil::savePointSetToFile(vtkSmartPointer<vtkPointSet> ps, std::strin
// -------------------- saveUnstructuredGridToFile --------------------
void VtkMeshUtil::saveUnstructuredGridToFile(vtkSmartPointer<vtkUnstructuredGrid> uGrid, std::string fname, std::string oname) {
vtkSmartPointer<vtkUnstructuredGridWriter> dataWriter = vtkSmartPointer<vtkUnstructuredGridWriter>::New();
- dataWriter->SetInput(uGrid);
+ dataWriter->SetInputData(uGrid);
dataWriter->SetFileName(fname.c_str());
dataWriter->SetHeader(oname.c_str());
@@ -143,7 +143,7 @@ void VtkMeshUtil::saveUnstructuredGridToFile(vtkSmartPointer<vtkUnstructuredGrid
// -------------------- savePolyDataToFile --------------------
void VtkMeshUtil::savePolyDataToFile(vtkSmartPointer<vtkPolyData> pData, std::string fname, std::string oname) {
vtkSmartPointer<vtkPolyDataWriter> dataWriter = vtkSmartPointer<vtkPolyDataWriter>::New();
- dataWriter->SetInput(pData);
+ dataWriter->SetInputData(pData);
dataWriter->SetFileName(fname.c_str());
dataWriter->SetHeader(oname.c_str());
@@ -154,7 +154,7 @@ void VtkMeshUtil::savePolyDataToFile(vtkSmartPointer<vtkPolyData> pData, std::st
// -------------------- saveStructuredGridToFile --------------------
void VtkMeshUtil::saveStructuredGridToFile(vtkSmartPointer<vtkStructuredGrid> sGrid, std::string fname, std::string oname) {
vtkSmartPointer<vtkStructuredGridWriter> dataWriter = vtkSmartPointer<vtkStructuredGridWriter>::New();
- dataWriter->SetInput(sGrid);
+ dataWriter->SetInputData(sGrid);
dataWriter->SetFileName(fname.c_str());
dataWriter->SetHeader(oname.c_str());
@@ -256,7 +256,7 @@ vtkSmartPointer< vtkPolyData > VtkMeshUtil::vtkPointSetToVtkPolyData(vtkSmartPoi
result = vtkPolyData::SafeDownCast(aPointSet);
else {
vtkSmartPointer<vtkDataSetSurfaceFilter> surfaceFilter = vtkSmartPointer<vtkDataSetSurfaceFilter>::New();
- surfaceFilter->SetInput(aPointSet);
+ surfaceFilter->SetInputData(aPointSet);
surfaceFilter->Update();
result = surfaceFilter->GetOutput();
diff --git a/sdk/components/vtkmesh/VtkMeshUtil.h b/sdk/components/vtkmesh/VtkMeshUtil.h
index 18b9e35..d54485b 100644
--- a/sdk/components/vtkmesh/VtkMeshUtil.h
+++ b/sdk/components/vtkmesh/VtkMeshUtil.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/doc/groups.h b/sdk/doc/groups.h
index 7b07124..6efb96d 100644
--- a/sdk/doc/groups.h
+++ b/sdk/doc/groups.h
@@ -24,6 +24,11 @@
* The basic image actions of the CamiTK SDK.
* The @ref camitk::Action image actions features bacic actions working on volumic image (@ref camitk::ImageComponent)
*
+ * @defgroup group_sdk_actions_ImageAcquisition ImageAcquisition
+ * @ingroup group_sdk_actions
+ * The generics actions of the CamiTK SDK to perform image acquisition.
+ * The @ref camitk::Action ImageAcquisition features actions through interface system to perform any imaging acquisition process while manipulating ImageComponent object.
+ *
* @defgroup group_sdk_actions_image_arbitraryslice Arbitrary Slice
* @ingroup group_sdk_actions_image
* A basic action allowing you to select the arbitray slice on your @ref camitk::ImageComponent.
@@ -386,7 +391,6 @@
* Please directly take a look at the corresponding classes for more information.
*
*
- *
* @defgroup group_sdk_libraries_core_viewer Viewer
* @ingroup group_sdk_libraries_core
* The CamiTK Core Viewer structure.
@@ -404,10 +408,35 @@
* The QtPropertyBrowser library allows one to manage the Qt property
*
*
- *
- * The applications of the CamiTK SDK.
* @defgroup group_sdk_cmake CMake macros
* @ingroup group_sdk
- * The CMake macros defined for the CamiTK SDK.
+ * The CMake macros used to configure this project.
+ * These macros are CamiTK projects specific (the ones in the camitk subfolders), others are CMake macros that you can use in any CMake projects.
+ *
+ * @defgroup group_sdk_cmake_camitk camitk
+ * @ingroup group_sdk_cmake
+ * The CMake macros especially defined to configure CMake projects using CamiTK.
+ *
+ * @defgroup group_sdk_cmake_camitk_cdash cdash
+ * @ingroup group_sdk_cmake_camitk
+ * CamiTK CMake macros used for continuous integration purpose.
+ *
+ * @defgroup group_sdk_cmake_camitk_cdash_projects projects
+ * @ingroup group_sdk_cmake_camitk_cdash
+ * CamiTK CMake macros for generating the listing of all the CamiTK project as a build/SubProjects.cmake and build/Project.xml files.
+ * These files are used by CDash and continuous integration scripts to exactly know the CMake projects to work with and their cross-dependencies.
+ *
+ * @defgroup group_sdk_cmake_camitk_packaging packaging
+ * @ingroup group_sdk_cmake_camitk
+ * CamiTK CMake macros used to create package of the CamiTK project (a custom CEP or the CamiTK project itself).
+ *
+ * @defgroup group_sdk_cmake_camitk_test test
+ * @ingroup group_sdk_cmake_camitk
+ * CamiTK CMake macros used for testing.
+ *
+ * @defgroup group_sdk_cmake_camitk_test_level level
+ * @ingroup group_sdk_cmake_camitk_test
+ * CamiTK CMake macros used generating the mediawiki tab containing the list of all functionnal tests, classified by CamiTK extensions with their given LEVEL.
+ * @see https://forge.imag.fr/plugins/mediawiki/wiki/camitk/index.php/Testing_level_in_CamiTK
*
**/
\ No newline at end of file
diff --git a/sdk/libraries/cepcoreschema/CMakeLists.txt b/sdk/libraries/cepcoreschema/CMakeLists.txt
index 74c2f8f..67ee156 100644
--- a/sdk/libraries/cepcoreschema/CMakeLists.txt
+++ b/sdk/libraries/cepcoreschema/CMakeLists.txt
@@ -1,11 +1,3 @@
-project(cepcoreschema)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_cepcoreschema)
-else()
- set(LIB_NAME library-cepcoreschema)
-endif()
-
# XSD really needed
find_package(XSD REQUIRED)
@@ -16,6 +8,12 @@ file (GLOB_RECURSE XSD_INPUT_FILES *.xsd)
set (XSD_H)
set (XSD_SRCS)
+#TODO move to c++11 by adding --std c++11 to the cxx-tree option
+option(CAMITK_STRICT_CXX11 FALSE)
+if(CAMITK_STRICT_CXX11)
+ set(XSD_CXX_STD_FLAG "--std c++11")
+endif()
+
if (XSD_COMMAND)
set(XSD_COMMAND xsdcxx CACHE STRING "name of the XSD code synthesis compiler")
# generates headers from scratch
@@ -23,7 +21,7 @@ if (XSD_COMMAND)
get_filename_component(xsdFileName ${xsdFile} NAME_WE)
add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
COMMAND ${XSD_COMMAND}
- ARGS cxx-tree --generate-polymorphic --generate-serialization --namespace-map =cepcoreschema --polymorphic-type Method --polymorphic-type Criteria ${xsdFile}
+ ARGS cxx-tree ${XSD_CXX_STD_FLAG} --generate-polymorphic --generate-serialization --namespace-map =cepcoreschema --polymorphic-type Method --polymorphic-type Criteria ${xsdFile}
DEPENDS ${xsdFile})
set(XSD_H ${XSD_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
set(XSD_SRCS ${XSD_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
diff --git a/sdk/libraries/cepcoreschema/testdata/empty.xml b/sdk/libraries/cepcoreschema/testdata/empty.xml
index 167c92d..6272bbd 100644
--- a/sdk/libraries/cepcoreschema/testdata/empty.xml
+++ b/sdk/libraries/cepcoreschema/testdata/empty.xml
@@ -12,7 +12,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepcoreschema/testdata/exampleComponents.xml b/sdk/libraries/cepcoreschema/testdata/exampleComponents.xml
index 7d743e2..b765004 100644
--- a/sdk/libraries/cepcoreschema/testdata/exampleComponents.xml
+++ b/sdk/libraries/cepcoreschema/testdata/exampleComponents.xml
@@ -11,7 +11,7 @@
<copyright><![CDATA[/*****************************************************************************
$USERDEF_LICENCE_BEGIN$
CamiTK - Computer Assisted Medical Intervention ToolKit
-(c) 2001-2013 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+(c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
Visit http://camitk.imag.fr for more information
diff --git a/sdk/libraries/cepgenerator/ActionExtensionGenerator.cpp b/sdk/libraries/cepgenerator/ActionExtensionGenerator.cpp
index aa3d0b2..2cffeec 100644
--- a/sdk/libraries/cepgenerator/ActionExtensionGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ActionExtensionGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ActionExtensionGenerator.h b/sdk/libraries/cepgenerator/ActionExtensionGenerator.h
index c84b78e..5dad7b5 100644
--- a/sdk/libraries/cepgenerator/ActionExtensionGenerator.h
+++ b/sdk/libraries/cepgenerator/ActionExtensionGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,7 +43,7 @@ class ActionGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Generate an action extension.
*
**/
class ActionExtensionGenerator : public ExtensionGenerator {
diff --git a/sdk/libraries/cepgenerator/ActionGenerator.cpp b/sdk/libraries/cepgenerator/ActionGenerator.cpp
index f1200cc..5f0ff55 100644
--- a/sdk/libraries/cepgenerator/ActionGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ActionGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ActionGenerator.h b/sdk/libraries/cepgenerator/ActionGenerator.h
index 948e3a8..a10e62a 100644
--- a/sdk/libraries/cepgenerator/ActionGenerator.h
+++ b/sdk/libraries/cepgenerator/ActionGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -45,7 +45,7 @@ class ParameterGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Generate an action
*
**/
class ActionGenerator {
diff --git a/sdk/libraries/cepgenerator/CMakeLists.txt b/sdk/libraries/cepgenerator/CMakeLists.txt
index e9ab9d5..89fa171 100644
--- a/sdk/libraries/cepgenerator/CMakeLists.txt
+++ b/sdk/libraries/cepgenerator/CMakeLists.txt
@@ -1,20 +1,10 @@
-project(cepgenerator)
-
-#set (CEPGENERATOR_H
-# CepGenerator.h
-#)
-#
-#set (CEPGENERATOR_SRCS
-# CepGenerator.cpp
-#)
-
gather_headers_and_sources(CEPGENERATOR)
camitk_library( STATIC
- SOURCES ${CEPGENERATOR_HEADERS} ${CEPGENERATOR_SOURCES}
- NEEDS_XSD
+ SOURCES ${CEPGENERATOR_HEADERS} ${CEPGENERATOR_SOURCES}
+ NEEDS_XSD
NEEDS_XERCESC
NEEDS_CEP_LIBRARIES cepcoreschema
- CEP_NAME OZ
- DESCRIPTION "Create CEP and file skeletons from xml files"
+ CEP_NAME SDK
+ DESCRIPTION "Create CEP and file skeletons from xml files"
)
diff --git a/sdk/libraries/cepgenerator/CepGenerator.cpp b/sdk/libraries/cepgenerator/CepGenerator.cpp
index ab9edd8..15d1132 100644
--- a/sdk/libraries/cepgenerator/CepGenerator.cpp
+++ b/sdk/libraries/cepgenerator/CepGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -53,52 +53,11 @@ inline void initMyResource() {
using namespace cepcoreschema;
-bool CepGenerator::generateCEP(QString xmlFileName, QString devDirectoryName) {
-
- try {
- std::cout << "Generating CEP..." << std::endl;
- CepGenerator * generator = new CepGenerator(xmlFileName, devDirectoryName);
- generator->createDomTree();
- generator->generateDirectoryTree();
- generator->createComponentExtensionDoms();
- generator->createActionExtensionDoms();
- generator->createLibrarieDoms();
- generator->generateExtensions();
- delete generator;
- } catch (QString msg) {
- std::cout << msg.toStdString() << std::endl;
- std::cout << "Could not generate CEP, sorry..." << std::endl;
- return false;
- }
-
- return true;
-}
-
-bool CepGenerator::generateCEP(std::auto_ptr<cepcoreschema::Cep> domCep, QString devDirectoryName) {
-
- try {
- std::cout << "Generating CEP..." << std::endl;
- CepGenerator * generator = new CepGenerator(domCep, devDirectoryName);
-// generator->createDomTree();
- generator->generateDirectoryTree();
- generator->createComponentExtensionDoms();
- generator->createActionExtensionDoms();
- generator->createLibrarieDoms();
- generator->generateExtensions();
- delete generator;
- } catch (QString msg) {
- std::cout << msg.toStdString() << std::endl;
- std::cout << "Could not generate CEP, sorry..." << std::endl;
- return false;
- }
-
- return true;
-}
-
CepGenerator::CepGenerator(QString xmlFilename, QString devDirectoryName) {
initMyResource();
setXmlFileName(xmlFilename);
setDevDirectoryName(devDirectoryName);
+ createDomTree();
}
CepGenerator::CepGenerator(std::auto_ptr<cepcoreschema::Cep> domCep, QString devDirectoryName) {
@@ -143,8 +102,7 @@ void CepGenerator::createDomTree() throw (QString) {
try {
this->domCep = cep(xmlFileStr, xml_schema::flags::dont_validate);
- setLicence();
- } catch (const xml_schema::exception& e) {
+ } catch (const xml_schema::exception& e) {
std::cout << "Error Parsing XML file:" << std::endl;
std::cout << e << std::endl;
throw QString(e.what());
@@ -483,3 +441,12 @@ void CepGenerator::generateExtensions() {
}
}
+
+void CepGenerator::process() throw (QString) {
+ setLicence();
+ generateDirectoryTree();
+ createComponentExtensionDoms();
+ createActionExtensionDoms();
+ createLibrarieDoms();
+ generateExtensions();
+}
diff --git a/sdk/libraries/cepgenerator/CepGenerator.h b/sdk/libraries/cepgenerator/CepGenerator.h
index 7297c3e..f6522a8 100644
--- a/sdk/libraries/cepgenerator/CepGenerator.h
+++ b/sdk/libraries/cepgenerator/CepGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -52,26 +52,47 @@ class ExtensionGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * This class contains the entry points to generate CEP.
+ *
+ * A CEP is generated form an XML file or from a dom xml-schema. \n
+ * See https://forge.imag.fr/plugins/mediawiki/wiki/camitk/index.php/CEP to understand how a CEP is buildt. \n
+ * <b>Release 3.5: Suppose that the CEP does NOT already exist. </b>
*
**/
class CepGenerator {
public :
- /// Supposes that the CEP does NOT exist
- static bool generateCEP(QString xmlFileName, QString devDirectoryName);
- /// Supposes that the CEP does NOT exist
- static bool generateCEP(std::auto_ptr<cepcoreschema::Cep> domCep, QString devDirectoryName);
-protected:
+ /**
+ * Create a CEPGenerator from the XML file \c xmlFileName in the directory \c devDirectoryName. \n
+ *
+ * <b>Supposes that the CEP does NOT exist.</b>
+ * Create a domCep from the XML file
+ *
+ **/
CepGenerator(QString xmlFilename, QString devDirectoryName);
+
+ /**
+ * Create a CEPGenerator from the DOM XML-schema \c domCep in the directory \c devDirectoryName. \n
+ *
+ * <b>Supposes that the CEP does NOT exist.</b>
+ *
+ **/
CepGenerator(std::auto_ptr<cepcoreschema::Cep> domCep, QString devDirectoryName);
~CepGenerator();
+ /// call all methods to generate the CEP from the DomTree.
+ void process() throw (QString);
+
+protected:
+
+
/// Set the input XML CEP manifest (ant check its xml validity)
virtual void setXmlFileName(QString xmlFileName) throw (QString);
+
/// Where to generate the CEP directories and files
virtual void setDevDirectoryName(QString devDirectoryName) throw (QString);
+
/** Create the general directory tree (the same for every CEP)
Copies the default files in the right directories:
@@ -95,30 +116,51 @@ protected:
virtual void generateDirectoryTree() throw(QString);
/** @{ Helping Functions for generateDirectoryTree */
- ///
+
+ /// Serialize the manifest ie serialize the domCep to a std::string
virtual void serializeManifest();
- ///
+
+ /// Generate CMakeLists file
virtual void generateGlobalCMakeLists();
- ///
+
+ /// Generate copyright file
virtual void generateCopyright();
- ///
+
+ /// Generate Readme File
virtual void generateReadme();
- ///
+
+ /// Generate the FindCamiTK file
virtual void copyFindCamiTK();
- ///
+
+ /// Generate the Actions directory
virtual void generateActionsDirectory();
- ///
+
+ /// Generate the Applications directory
virtual void generateApplicationsDirectory();
- ///
+
+ /// Generate the Components directory
virtual void generateComponentsDirectory();
- ///
+
+ /// Generate the Libraries directory
virtual void generateLibrariesDirectory();
- ///
+
+ /// Set the licence ine the \c licence variable to be included later in the generated files.
virtual void setLicence();
/** @} */
+ /**
+ Create the ActionExtensionDom if needed and call the appropriate methods to generate the actions Extensions.
+ */
virtual void createActionExtensionDoms();
+
+ /**
+ Create the ComponentExtensionDom if needed and call the appropriate methods to generate the components Extensions.
+ */
virtual void createComponentExtensionDoms();
+
+ /**
+ Create the LibrariesDom if needed and call the appropriate methods to generate the libraries.
+ */
virtual void createLibrarieDoms();
virtual void generateExtensions();
diff --git a/sdk/libraries/cepgenerator/ClassNameHandler.cpp b/sdk/libraries/cepgenerator/ClassNameHandler.cpp
index d7d0dd9..8c89270 100644
--- a/sdk/libraries/cepgenerator/ClassNameHandler.cpp
+++ b/sdk/libraries/cepgenerator/ClassNameHandler.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ClassNameHandler.h b/sdk/libraries/cepgenerator/ClassNameHandler.h
index be17e62..32dfe98 100644
--- a/sdk/libraries/cepgenerator/ClassNameHandler.h
+++ b/sdk/libraries/cepgenerator/ClassNameHandler.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ComponentExtensionGenerator.cpp b/sdk/libraries/cepgenerator/ComponentExtensionGenerator.cpp
index 4f04a35..6ed06d7 100644
--- a/sdk/libraries/cepgenerator/ComponentExtensionGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ComponentExtensionGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ComponentExtensionGenerator.h b/sdk/libraries/cepgenerator/ComponentExtensionGenerator.h
index c9f1b7a..e5d0529 100644
--- a/sdk/libraries/cepgenerator/ComponentExtensionGenerator.h
+++ b/sdk/libraries/cepgenerator/ComponentExtensionGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -47,7 +47,7 @@ class ComponentGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Generate a component extension.
*
**/
class ComponentExtensionGenerator : public ExtensionGenerator {
diff --git a/sdk/libraries/cepgenerator/ComponentGenerator.cpp b/sdk/libraries/cepgenerator/ComponentGenerator.cpp
index d3907aa..f845466 100644
--- a/sdk/libraries/cepgenerator/ComponentGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ComponentGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ComponentGenerator.h b/sdk/libraries/cepgenerator/ComponentGenerator.h
index 79fd6cc..64a0e53 100644
--- a/sdk/libraries/cepgenerator/ComponentGenerator.h
+++ b/sdk/libraries/cepgenerator/ComponentGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -47,7 +47,7 @@ class ParameterGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Create a component
*
**/
class ComponentGenerator {
diff --git a/sdk/libraries/cepgenerator/DependencyGenerator.cpp b/sdk/libraries/cepgenerator/DependencyGenerator.cpp
index 8654cfe..5669654 100644
--- a/sdk/libraries/cepgenerator/DependencyGenerator.cpp
+++ b/sdk/libraries/cepgenerator/DependencyGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/DependencyGenerator.h b/sdk/libraries/cepgenerator/DependencyGenerator.h
index a39e43c..7a395e0 100644
--- a/sdk/libraries/cepgenerator/DependencyGenerator.h
+++ b/sdk/libraries/cepgenerator/DependencyGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -42,7 +42,7 @@ class Dependency;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Create the dependencies, generate the "NEEDs_LIBRARY" in the cmake file.
*
**/
class DependencyGenerator {
diff --git a/sdk/libraries/cepgenerator/ExtensionGenerator.cpp b/sdk/libraries/cepgenerator/ExtensionGenerator.cpp
index 40ae413..91c69c0 100644
--- a/sdk/libraries/cepgenerator/ExtensionGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ExtensionGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ExtensionGenerator.h b/sdk/libraries/cepgenerator/ExtensionGenerator.h
index 522e4d9..8966e06 100644
--- a/sdk/libraries/cepgenerator/ExtensionGenerator.h
+++ b/sdk/libraries/cepgenerator/ExtensionGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,7 +40,7 @@ class DependencyGenerator;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please.
+ * Common abstract class to generate extensions.
*
* @note
* This class is abstract and thus cannot be instanciated.
diff --git a/sdk/libraries/cepgenerator/LibraryGenerator.cpp b/sdk/libraries/cepgenerator/LibraryGenerator.cpp
index bf0d57d..3c985a9 100644
--- a/sdk/libraries/cepgenerator/LibraryGenerator.cpp
+++ b/sdk/libraries/cepgenerator/LibraryGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/LibraryGenerator.h b/sdk/libraries/cepgenerator/LibraryGenerator.h
index a38579f..9340a97 100644
--- a/sdk/libraries/cepgenerator/LibraryGenerator.h
+++ b/sdk/libraries/cepgenerator/LibraryGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -44,7 +44,7 @@ class Library;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here please
+ * Generate the library
*
**/
class LibraryGenerator : public ExtensionGenerator {
diff --git a/sdk/libraries/cepgenerator/ParameterGenerator.cpp b/sdk/libraries/cepgenerator/ParameterGenerator.cpp
index 488a8b1..9b81dde 100644
--- a/sdk/libraries/cepgenerator/ParameterGenerator.cpp
+++ b/sdk/libraries/cepgenerator/ParameterGenerator.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/ParameterGenerator.h b/sdk/libraries/cepgenerator/ParameterGenerator.h
index 9741498..007ce42 100644
--- a/sdk/libraries/cepgenerator/ParameterGenerator.h
+++ b/sdk/libraries/cepgenerator/ParameterGenerator.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -42,7 +42,7 @@ class Parameter;
* @ingroup group_sdk_libraries_cepgenerator
*
* @brief
- * TODO Celine comment here pl
+ * Generate parameters
*
**/
class ParameterGenerator {
diff --git a/sdk/libraries/cepgenerator/resources/Action.cpp.in b/sdk/libraries/cepgenerator/resources/Action.cpp.in
index f203721..315727c 100644
--- a/sdk/libraries/cepgenerator/resources/Action.cpp.in
+++ b/sdk/libraries/cepgenerator/resources/Action.cpp.in
@@ -14,6 +14,8 @@
#include <itkVTKImageToImageFilter.h>
#include <itkImageToVTKImageFilter.h>
#include <ItkProgressObserver.h>
+// Do not forget to include your own ITK filter here and to remove this one:
+#include <itkOtsuThresholdImageFilter.h>
@ENDIF_ITKFILTER@
using namespace camitk;
@@ -32,7 +34,7 @@ using namespace camitk;
addTag("@TAG@");
@ELSE_ADDTAG@
// Tags allow the user to search the actions trhough themes
- // You cad add tags here with the method addTag("tagName");
+ // You can add tags here with the method addTag("tagName");
@END_ADDTAG@
@@ -194,8 +196,9 @@ vtkSmartPointer<vtkImageData> @ACTIONCLASSNAME@::itkProcess(vtkSmartPointer<vtkI
typename vtkToItkFilterType::Pointer vtkToItkFilter = vtkToItkFilterType::New();
// Declare and create your own private ITK filter here...
- // For example: typedef itk::OtsuThresholdImageFilter<InputImageType, OutputImageType> FilterType;
- // typename FilterType::Pointer filter = FilterType::New();
+ // For example: we use here the Otsu filter
+ typedef itk::OtsuThresholdImageFilter<InputImageType, OutputImageType> FilterType;
+ typename FilterType::Pointer filter = FilterType::New();
// In the same way, once the image is filtered, we need to convert it again to
// VTK format to give it to CamiTK.
@@ -213,17 +216,20 @@ vtkSmartPointer<vtkImageData> @ACTIONCLASSNAME@::itkProcess(vtkSmartPointer<vtkI
// From VTK to ITK
vtkToItkFilter->SetInput(img);
// For the filter itself
- // For example: filter->SetInput(vtkToItkFilter->GetOutput());
- // filter->AddObserver ( itk::ProgressEvent(), observer );
- // filter->SetOutsideValue((OutputPixelType) parameters->getOutsideValue());
- // filter->SetInsideValue( (OutputPixelType) parameters->getInsideValue() );
+ // For example, replace these lines by your own code:
+ filter->SetInput(vtkToItkFilter->GetOutput());
+ filter->AddObserver ( itk::ProgressEvent(), observer );
+ // Use your parameters if they are well defined
+ //filter->SetOutsideValue((OutputPixelType) parameters->getOutsideValue());
+ //filter->SetInsideValue( (OutputPixelType) parameters->getInsideValue() );
+
// ------------------------- WRITE YOUR CODE HERE ----------------------------------
// From ITK to VTK
- // Change the following line to put your filter instead of vtkToItkFilter
- // For example: itkToVtkFilter->SetInput(filter->GetOutput());
- itkToVtkFilter->SetInput(vtkToItkFilter->GetOutput());
+ // Change the following line to put your filter instead of filter
+ // For example:
+ itkToVtkFilter->SetInput(filter->GetOutput());
// --------------------- Actually execute all filters parts --------------------
itkToVtkFilter->Update();
diff --git a/sdk/libraries/cepgenerator/resources/COPYRIGHT.in b/sdk/libraries/cepgenerator/resources/COPYRIGHT.in
index c5df835..0d0f205 100644
--- a/sdk/libraries/cepgenerator/resources/COPYRIGHT.in
+++ b/sdk/libraries/cepgenerator/resources/COPYRIGHT.in
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/cepgenerator/resources/FindCamiTK.cmake.in b/sdk/libraries/cepgenerator/resources/FindCamiTK.cmake.in
index 550e1c2..2ff08a3 100644
--- a/sdk/libraries/cepgenerator/resources/FindCamiTK.cmake.in
+++ b/sdk/libraries/cepgenerator/resources/FindCamiTK.cmake.in
@@ -29,7 +29,7 @@
# $CAMITK_LICENCE_BEGIN$
#
# CamiTK - Computer Assisted Medical Intervention ToolKit
-# (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+# (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
#
# Visit http://camitk.imag.fr for more information
#
diff --git a/sdk/libraries/core/CMakeLists.txt b/sdk/libraries/core/CMakeLists.txt
index a7c8102..d2aa6fb 100644
--- a/sdk/libraries/core/CMakeLists.txt
+++ b/sdk/libraries/core/CMakeLists.txt
@@ -22,6 +22,9 @@ include_directories(
${CAMITK_INCLUDE_DIRECTORIES}
)
+# Instruct CMake to run moc automatically when needed.
+set(CMAKE_AUTOMOC ON)
+
# find all sources files, set rules for qt files...
gather_headers_and_sources(${CAMITK_CORE_LIB_TARGET_NAME})
@@ -43,6 +46,9 @@ link_directories(${CAMITK_BUILD_BIN_DIR} ${CAMITK_PUBLIC_LIB_DIR})
# because of the Singleton design pattern and various factory bits in CAMITK_CORE_LIB_NAME.
add_library(${CAMITK_CORE_LIB_TARGET_NAME} SHARED ${${CAMITK_CORE_LIB_TARGET_NAME}_SOURCES})
+# linking with Qt5
+qt5_use_modules(${CAMITK_CORE_LIB_TARGET_NAME} ${CAMITK_QT_COMPONENTS})
+
# Update XML Project description adding this target as a subproject of the main CamiTK project with
# its dependencies (in the CMake target point of view)
if(PACKAGING_NSIS)
@@ -93,8 +99,12 @@ endif()
if(PACKAGING_NSIS)
add_dependencies(${CAMITK_CORE_LIB_TARGET_NAME} library_qtpropertybrowser)
+ # add the dependency to the qtpropertybrowser automoc target
+ set_property(TARGET ${CAMITK_CORE_LIB_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library_qtpropertybrowser)
else()
add_dependencies(${CAMITK_CORE_LIB_TARGET_NAME} library-qtpropertybrowser)
+ # add the dependency to the qtpropertybrowser automoc target
+ set_property(TARGET ${CAMITK_CORE_LIB_TARGET_NAME} APPEND PROPERTY AUTOGEN_TARGET_DEPENDS library-qtpropertybrowser)
endif()
diff --git a/sdk/libraries/core/CamiTKAPI.h b/sdk/libraries/core/CamiTKAPI.h
index 3a388af..323250a 100644
--- a/sdk/libraries/core/CamiTKAPI.h
+++ b/sdk/libraries/core/CamiTKAPI.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/CamiTKVersion.h b/sdk/libraries/core/CamiTKVersion.h
index 856c94d..52bd82c 100644
--- a/sdk/libraries/core/CamiTKVersion.h
+++ b/sdk/libraries/core/CamiTKVersion.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,8 +28,8 @@
namespace camitk
{
-const char * Core::version = "CamiTK 3.4.0";
-const char * Core::shortVersion = "camitk-3.4";
-const char * Core::soVersion = "3";
+const char * Core::version = "CamiTK 4.0.0";
+const char * Core::shortVersion = "camitk-4.0";
+const char * Core::soVersion = "4";
const char * Core::debugPostfix = "-debug";
}
diff --git a/sdk/libraries/core/CamiTKVersion.h.in b/sdk/libraries/core/CamiTKVersion.h.in
index 452e076..0b7408e 100644
--- a/sdk/libraries/core/CamiTKVersion.h.in
+++ b/sdk/libraries/core/CamiTKVersion.h.in
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/Core.cpp b/sdk/libraries/core/Core.cpp
index ae9b118..07ef7b0 100644
--- a/sdk/libraries/core/Core.cpp
+++ b/sdk/libraries/core/Core.cpp
@@ -1,340 +1,373 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// -- Core stuff
-#include "Core.h"
-#include "CamiTKVersion.h"
-#include "Log.h"
-#include "ExtensionManager.h"
-#include "Action.h"
-#include <Application.h>
-
-// -- QT stuff
-#include <QDir>
-#include <QApplication>
-#include <QProcess>
-
-// MSVC does not have the C++ Standard rint function (it should be included in any C99 implementation)
-#if defined(_WIN32) && !defined(__MINGW32__) && (_MSC_VER < 1800)
-#include <math.h>
-double rint(double x) {
- // middle value point test
- if (ceil(x+0.5) == floor(x+0.5)) {
- int a = (int)ceil(x);
- if (a%2 == 0) {
- return ceil(x);
- } else {
- return floor(x);
- }
- } else
- return floor(x+0.5);
-}
-#endif
-
-namespace camitk {
-
-// ------------- getPaths (static) -----------------
-const QString Core::getPaths() {
- QStringList diagnosis;
-
- diagnosis << "- CamiTK version......................... " + QString(Core::version);
- diagnosis << "- CamiTK Short Version................... " + QString(Core::shortVersion);
- diagnosis << "- CamiTK SO NAME......................... " + QString(Core::soVersion);
- diagnosis << "- CamiTK Global Installation Directory... " + Core::getGlobalInstallDir();
- diagnosis << "- User Installation Directory............ " + Core::getUserInstallDir();
- diagnosis << "- Current Working Directory.............. " + Core::getCurrentWorkingDir();
- diagnosis << "- Test Data Directory.................... " + Core::getTestDataDir();
- diagnosis << "- Component Extension Directories........ " + Core::getComponentDirectories().join(",");
- diagnosis << "- Action Extension Directories........... " + Core::getActionDirectories().join(",");
-
- return diagnosis.join("\n");
-}
-
-// ------------- getConfig (static) -----------------
-const QString Core::getConfig() {
- QStringList diagnosis;
-
- //-- first get all paths
- diagnosis << getPaths();
-
- // how many extensions of a givent type (component or action) are available
- unsigned int extensionCount = 0;
- // how many file formats are managed (for component extension) or how many single actions are available (for action extension)
- unsigned int extensionUnitCount = 0;
- // how many extensions installed globally (on the machine/CAMITK_DIR directory)
- unsigned int globalCount = 0;
- // how many extensions installed locally in the user global installation (%APP_DATA% on win, and ~/.config on Linux/Mac)
- unsigned int localCount = 0;
- // how many extensions installed in the current working directory (generally the build directory)
- unsigned int workingDirCount = 0;
- // how many extensions installed manually in the application (using another specific path)
- unsigned int userCount = 0;
- QString installationDirectory;
-
- //-- component extensions
- QStringList components;
-
- // regular component extensions
- const QList< ComponentExtension* > & allCE = ExtensionManager::getComponentExtensionsList();
-
- foreach(ComponentExtension *ce, allCE) {
- installationDirectory = ExtensionManager::getInstallationString(ce->getLocation());
- components << " - " + ce->getName() + " (" + ce->getFileExtensions().join(", ") + ") " + installationDirectory; // to get more information, use ce->getDescription();
- extensionCount++;
- extensionUnitCount += ce->getFileExtensions().size();
- if (installationDirectory == "[G]")
- globalCount++;
- else if (installationDirectory == "[L]")
- localCount++;
- else if (installationDirectory == "[W]")
- workingDirCount++;
- else if (installationDirectory == "[U]")
- userCount++;
- }
-
- // directory extensions
- const QList< ComponentExtension* > & allDCE = ExtensionManager::getDataDirectoryComponentsList();
- foreach(ComponentExtension *ce, allDCE) {
- installationDirectory = ExtensionManager::getInstallationString(ce->getLocation());
- components << " - " + ce->getName() + " (directory) " + installationDirectory;
- extensionCount++;
- extensionUnitCount += ce->getFileExtensions().size();
- if (installationDirectory == "[G]")
- globalCount++;
- else if (installationDirectory == "[L]")
- localCount++;
- else if (installationDirectory == "[W]")
- workingDirCount++;
- else if (installationDirectory == "[U]")
- userCount++;
- }
-
- diagnosis << "- Number of Component Extensions......... " + QString::number(extensionCount) + " (locations: " + QString::number(globalCount) + " global, " + QString::number(localCount) + " local, " + QString::number(workingDirCount) + " in working directory, " + QString::number(userCount) + " by user)";
- diagnosis << "- Number of File Extensions Supported.... " + QString::number(extensionUnitCount);
-
- //-- action extensions
- extensionCount = extensionUnitCount = globalCount = localCount = workingDirCount = userCount = 0;
-
- QStringList actions;
- const QList< ActionExtension* > & allActions = ExtensionManager::getActionExtensionsList();
-
- foreach(ActionExtension *ae, allActions) {
- QStringList actionNames;
- for (int i=0; i<ae->getActions().size(); i++) {
- actionNames << ae->getActions().at(i)->getName(); // + ": " + a->getDescription();
- }
- installationDirectory = ExtensionManager::getInstallationString(ExtensionManager::getActionExtensions().key(ae));
- actions << " - " + ae->getName() + " " + installationDirectory +": " + QString::number(ae->getActions().size()) + " actions (" + actionNames.join(", ") + ")"; //+ ae->getDescription();
- extensionCount++;
- extensionUnitCount += ae->getActions().size();
- if (installationDirectory == "[G]")
- globalCount++;
- else if (installationDirectory == "[L]")
- localCount++;
- else if (installationDirectory == "[W]")
- workingDirCount++;
- else if (installationDirectory == "[U]")
- userCount++;
- }
-
- diagnosis << "- Number of Action Extensions............ " + QString::number(extensionCount) + " (locations: " + QString::number(globalCount) + " global, " + QString::number(localCount) + " local, " + QString::number(workingDirCount) + " in working directory, " + QString::number(userCount) + " by user)";
- diagnosis << "- Number of Actions...................... " + QString::number(extensionUnitCount);
-
- //-- details of the extensions
- diagnosis << "- Registered components (G=Global, L=Local, W=Working, U=User):";
- diagnosis += components;
-
- diagnosis << "- Registered actions (G=Global, L=Local, W=Working, U=User):";
- diagnosis += actions;
-
- return diagnosis.join("\n");
-}
-
-// ------------- getInstallDirectories (static) -----------------
-const QStringList Core::getInstallDirectories(QString suffix) {
- QStringList dir;
-
- // current dir actions (build)
- QDir currentWorkingDir(getCurrentWorkingDir());
- if (currentWorkingDir.cd(suffix))
- dir.append(currentWorkingDir.canonicalPath().toUtf8());
-
- // user actions
- QDir userConfigDir(getUserInstallDir());
- if (userConfigDir.cd(suffix) && !dir.contains(userConfigDir.canonicalPath().toUtf8()))
- dir.append(userConfigDir.canonicalPath().toUtf8());
-
- // global actions
- QDir globalInstallDir(getGlobalInstallDir());
- if (globalInstallDir.cd(suffix) && !dir.contains(globalInstallDir.canonicalPath().toUtf8()))
- dir.append(globalInstallDir.canonicalPath().toUtf8());
-
- return dir;
-}
-
-// ------------- getActionDirectories (static) -----------------
-const QStringList Core::getActionDirectories() {
- return getInstallDirectories("lib/"+QString(Core::shortVersion)+"/actions");
-}
-
-// ------------- getComponentDirectories (static) -----------------
-const QStringList Core::getComponentDirectories() {
- return getInstallDirectories("lib/"+QString(Core::shortVersion)+"/components");
-}
-
-// ------------- getTestDataDir (static) -----------------
-const QString Core::getTestDataDir() {
- QStringList testDataDirectories = getInstallDirectories("share/" + QString(Core::shortVersion) + "/testdata");
- // just returns the first one if exists
- if (testDataDirectories.size()>0)
- return testDataDirectories.at(0);
- else
- // otherwise returns user home directory
- return QDir::home().canonicalPath().toUtf8();
-}
-
-// ------------- getGlobalInstallDir (static) -----------------
-const QString Core::getGlobalInstallDir() {
- QDir camitkDir;
- QByteArray camitkDirectory;
- bool processOk = false;
-
- if (Application::getName() != "camitk-config") {
- // run camitk-imp to get the "installed" directory
- // note: camitk-imp must be in the path, or it is not considered as installed
- // (installed = available at any time)
- QProcess process;
- process.start("camitk-config", QStringList() << "--camitkDir", QIODevice::ReadWrite | QIODevice::Text);
-
- if (process.waitForStarted(-1)) {
- while(process.waitForReadyRead(-1)) {
- camitkDirectory += process.readAllStandardOutput();
- }
- camitkDir = QString(camitkDirectory).trimmed();
- // if the directory does not exist check CamiTKDir.txt
- processOk = camitkDir.exists();
- }
- }
-
- // if there was a problem or if this is camitk-config, check CamiTKDir.txt
- if (!processOk) {
- // not found use the last installation path if available
- QFile file(getUserInstallDir()+"/CamiTKDir.txt");
- if (file.exists() && file.open(QIODevice::ReadOnly | QIODevice::Text)) {
- camitkDirectory = file.readLine();
- camitkDir = QString(camitkDirectory).trimmed();
- } else {
- // everything failed, use current application directory path (last chance)
- camitkDir = qApp->applicationDirPath();
- camitkDir.cdUp();
- }
- }
-
- return camitkDir.canonicalPath().toUtf8();
-}
-
-// ------------- getUserConfigDir (static) -----------------
-const QString Core::getUserInstallDir() {
- // obtain (platform specific) application's data/settings directory from settings file
- return QFileInfo(Application::getSettings().fileName()).absolutePath();
-}
-
-// ------------- getCurrentWorkingDir (static) -----------------
-const QString Core::getCurrentWorkingDir() {
- return QDir::currentPath();
-}
-
-// ------------- isDebugBuild (static) -----------------
-const bool Core::isDebugBuild() {
-#ifdef QT_DEBUG
- return true;
-#else
- return false;
-#endif
-}
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-// ----------------------------------------------------------------
-//
-// OBSOLETE PUBLIC METHODS
-//
-// TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated.
-// They are to be removed in CamiTK 4.0
-// ----------------------------------------------------------------
-
-
-// ------------- getComponentDir (static) -----------------
-//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
-const QString Core::getComponentDir() {
- QDir appDir(getGlobalInstallDir());
- appDir.cd("lib/"+QString(Core::shortVersion)+"/components");
- return appDir.canonicalPath().toUtf8();
-}
-
-
-// ------------- getActionDir (static) -----------------
-//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
-const QString Core::getActionDir() {
- QDir appDir(getGlobalInstallDir());
- appDir.cd("lib/"+QString(Core::shortVersion)+"/actions");
- return appDir.canonicalPath().toUtf8();
-}
-
-
-// ------------- getModuleDir (static) -----------------
-//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
-const QString Core::getModuleDir(const QString & subpath) {
- QDir appDir(getGlobalInstallDir());
- appDir.cd("lib/"+QString(Core::shortVersion)+"/" + subpath);
- return appDir.canonicalPath().toUtf8();
-}
-
-// ------------- getLibDir (static) -----------------
-//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
-const QString Core::getCoreLibDir() {
- return getGlobalInstallDir();
-}
-
-
-}
-
-
-
-
-
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// -- Core stuff
+#include "Core.h"
+#include "CamiTKVersion.h"
+#include "Log.h"
+#include "ExtensionManager.h"
+#include "Action.h"
+#include <Application.h>
+
+// -- QT stuff
+#include <QDir>
+#include <QApplication>
+#include <QProcess>
+
+#include <vtkVersion.h>
+// @todo fix itk version matter
+//#include <itkVersion.h>
+
+// MSVC does not have the C++ Standard rint function (it should be included in any C99 implementation)
+#if defined(_WIN32) && !defined(__MINGW32__) && (_MSC_VER < 1800)
+#include <math.h>
+double rint(double x) {
+ // middle value point test
+ if (ceil(x+0.5) == floor(x+0.5)) {
+ int a = (int)ceil(x);
+ if (a%2 == 0) {
+ return ceil(x);
+ } else {
+ return floor(x);
+ }
+ } else
+ return floor(x+0.5);
+}
+#endif
+
+namespace camitk {
+
+// ------------- getPaths (static) -----------------
+const QString Core::getPaths() {
+ QStringList diagnosis;
+
+ QString compileType;
+ if (isDebugBuild()) {
+ compileType = "DEBUG";
+ } else {
+ compileType = "RELEASE";
+ }
+
+ QString stringOS;
+
+#ifdef _WIN32
+ stringOS = "WIN32";
+#endif
+
+#ifdef __APPLE__
+ stringOS = "APPLE";
+#endif
+
+#ifdef __linux__
+ stringOS = "LINUX";
+#endif
+
+ //diagnosis << "- ITK Version : " + QString(itkVersion::GetITKVersion());
+
+ diagnosis << "- CamiTK version......................... " + QString(Core::version);
+ diagnosis << "- CamiTK Short Version................... " + QString(Core::shortVersion);
+ diagnosis << "- CamiTK SO NAME......................... " + QString(Core::soVersion);
+ diagnosis << "- Operating System....................... " + stringOS;
+ diagnosis << "- Build type............................. " + compileType;
+ diagnosis << "- QT Version............................. " + QString(QT_VERSION_STR);
+ diagnosis << "- VTK Version............................ " + QString(vtkVersion::GetVTKVersion());
+ diagnosis << "- CamiTK Global Installation Directory... " + Core::getGlobalInstallDir();
+ diagnosis << "- User Installation Directory............ " + Core::getUserInstallDir();
+ diagnosis << "- Current Working Directory.............. " + Core::getCurrentWorkingDir();
+ diagnosis << "- Test Data Directory.................... " + Core::getTestDataDir();
+ diagnosis << "- Component Extension Directories........ " + Core::getComponentDirectories().join(",");
+ diagnosis << "- Action Extension Directories........... " + Core::getActionDirectories().join(",");
+
+ return diagnosis.join("\n");
+}
+
+// ------------- getConfig (static) -----------------
+const QString Core::getConfig() {
+ QStringList diagnosis;
+
+ //-- first get all paths
+ diagnosis << getPaths();
+
+ // how many extensions of a givent type (component or action) are available
+ unsigned int extensionCount = 0;
+ // how many file formats are managed (for component extension) or how many single actions are available (for action extension)
+ unsigned int extensionUnitCount = 0;
+ // how many extensions installed globally (on the machine/CAMITK_DIR directory)
+ unsigned int globalCount = 0;
+ // how many extensions installed locally in the user global installation (%APP_DATA% on win, and ~/.config on Linux/Mac)
+ unsigned int localCount = 0;
+ // how many extensions installed in the current working directory (generally the build directory)
+ unsigned int workingDirCount = 0;
+ // how many extensions installed manually in the application (using another specific path)
+ unsigned int userCount = 0;
+ QString installationDirectory;
+
+ //-- component extensions
+ QStringList components;
+
+ // regular component extensions
+ const QList< ComponentExtension* > & allCE = ExtensionManager::getComponentExtensionsList();
+
+ foreach(ComponentExtension *ce, allCE) {
+ installationDirectory = ExtensionManager::getInstallationString(ce->getLocation());
+ components << " - " + ce->getName() + " (" + ce->getFileExtensions().join(", ") + ") " + installationDirectory; // to get more information, use ce->getDescription();
+ extensionCount++;
+ extensionUnitCount += ce->getFileExtensions().size();
+ if (installationDirectory == "[G]")
+ globalCount++;
+ else if (installationDirectory == "[L]")
+ localCount++;
+ else if (installationDirectory == "[W]")
+ workingDirCount++;
+ else if (installationDirectory == "[U]")
+ userCount++;
+ }
+
+ // directory extensions
+ const QList< ComponentExtension* > & allDCE = ExtensionManager::getDataDirectoryComponentsList();
+ foreach(ComponentExtension *ce, allDCE) {
+ installationDirectory = ExtensionManager::getInstallationString(ce->getLocation());
+ components << " - " + ce->getName() + " (directory) " + installationDirectory;
+ extensionCount++;
+ extensionUnitCount += ce->getFileExtensions().size();
+ if (installationDirectory == "[G]")
+ globalCount++;
+ else if (installationDirectory == "[L]")
+ localCount++;
+ else if (installationDirectory == "[W]")
+ workingDirCount++;
+ else if (installationDirectory == "[U]")
+ userCount++;
+ }
+
+ diagnosis << "- Number of Component Extensions......... " + QString::number(extensionCount) + " (locations: " + QString::number(globalCount) + " global, " + QString::number(localCount) + " local, " + QString::number(workingDirCount) + " in working directory, " + QString::number(userCount) + " by user)";
+ diagnosis << "- Number of File Extensions Supported.... " + QString::number(extensionUnitCount);
+
+ //-- action extensions
+ extensionCount = extensionUnitCount = globalCount = localCount = workingDirCount = userCount = 0;
+
+ QStringList actions;
+ const QList< ActionExtension* > & allActions = ExtensionManager::getActionExtensionsList();
+
+ foreach(ActionExtension *ae, allActions) {
+ QStringList actionNames;
+ for (int i = 0; i < ae->getActions().size(); i++) {
+ actionNames << ae->getActions().at(i)->getName(); // + ": " + a->getDescription();
+ }
+ installationDirectory = ExtensionManager::getInstallationString(ExtensionManager::getActionExtensions().key(ae));
+ actions << " - " + ae->getName() + " " + installationDirectory + ": " + QString::number(ae->getActions().size()) + " actions (" + actionNames.join(", ") + ")"; //+ ae->getDescription();
+ extensionCount++;
+ extensionUnitCount += ae->getActions().size();
+ if (installationDirectory == "[G]")
+ globalCount++;
+ else if (installationDirectory == "[L]")
+ localCount++;
+ else if (installationDirectory == "[W]")
+ workingDirCount++;
+ else if (installationDirectory == "[U]")
+ userCount++;
+ }
+
+ diagnosis << "- Number of Action Extensions............ " + QString::number(extensionCount) + " (locations: " + QString::number(globalCount) + " global, " + QString::number(localCount) + " local, " + QString::number(workingDirCount) + " in working directory, " + QString::number(userCount) + " by user)";
+ diagnosis << "- Number of Actions...................... " + QString::number(extensionUnitCount);
+
+ //-- details of the extensions
+ diagnosis << "- Registered components (G=Global, L=Local, W=Working, U=User):";
+ diagnosis += components;
+
+ diagnosis << "- Registered actions (G=Global, L=Local, W=Working, U=User):";
+ diagnosis += actions;
+
+ return diagnosis.join("\n");
+}
+
+// ------------- getInstallDirectories (static) -----------------
+const QStringList Core::getInstallDirectories(QString suffix) {
+ QStringList dir;
+
+ // find the build directory according to the current directory
+ QDir currentWorkingDir(getCurrentWorkingDir());
+ if (currentWorkingDir.cd(suffix))
+ dir.append(currentWorkingDir.canonicalPath().toUtf8());
+
+ // user actions
+ QDir userConfigDir(getUserInstallDir());
+ if (userConfigDir.cd(suffix) && !dir.contains(userConfigDir.canonicalPath().toUtf8()))
+ dir.append(userConfigDir.canonicalPath().toUtf8());
+
+ // global actions
+ QDir globalInstallDir(getGlobalInstallDir());
+ if (globalInstallDir.cd(suffix) && !dir.contains(globalInstallDir.canonicalPath().toUtf8()))
+ dir.append(globalInstallDir.canonicalPath().toUtf8());
+
+ return dir;
+}
+
+// ------------- getActionDirectories (static) -----------------
+const QStringList Core::getActionDirectories() {
+ return getInstallDirectories("lib/" + QString(Core::shortVersion) + "/actions");
+}
+
+// ------------- getComponentDirectories (static) -----------------
+const QStringList Core::getComponentDirectories() {
+ return getInstallDirectories("lib/" + QString(Core::shortVersion) + "/components");
+}
+
+// ------------- getTestDataDir (static) -----------------
+const QString Core::getTestDataDir() {
+ QStringList testDataDirectories = getInstallDirectories("share/" + QString(Core::shortVersion) + "/testdata");
+ // just returns the first one if exists
+ if (testDataDirectories.size() > 0)
+ return testDataDirectories.at(0);
+ else
+ // otherwise returns user home directory
+ return QDir::home().canonicalPath().toUtf8();
+}
+
+// ------------- getGlobalInstallDir (static) -----------------
+const QString Core::getGlobalInstallDir() {
+ QDir camitkDir;
+ QByteArray camitkDirectory;
+ bool processOk = false;
+
+ if (Application::getName() != "camitk-config") {
+ // run camitk-imp to get the "installed" directory
+ // note: camitk-imp must be in the path, or it is not considered as installed
+ // (installed = available at any time)
+ QProcess process;
+ process.start("camitk-config", QStringList() << "--camitkDir", QIODevice::ReadWrite | QIODevice::Text);
+
+ if (process.waitForStarted(-1)) {
+ while (process.waitForReadyRead(-1)) {
+ camitkDirectory += process.readAllStandardOutput();
+ }
+ camitkDir = QString(camitkDirectory).trimmed();
+ // if the directory does not exist check CamiTKDir.txt
+ processOk = camitkDir.exists();
+ }
+ }
+
+ // if there was a problem or if this is camitk-config, check CamiTKDir.txt
+ if (!processOk) {
+ // not found use the last installation path if available
+ QFile file(getUserInstallDir() + "/CamiTKDir.txt");
+ if (file.exists() && file.open(QIODevice::ReadOnly | QIODevice::Text)) {
+ camitkDirectory = file.readLine();
+ camitkDir = QString(camitkDirectory).trimmed();
+ } else {
+ // everything failed, use current application directory path (last chance)
+ camitkDir = qApp->applicationDirPath();
+ camitkDir.cdUp();
+ }
+ }
+
+ return camitkDir.canonicalPath().toUtf8();
+}
+
+// ------------- getUserInstallDir (static) -----------------
+const QString Core::getUserInstallDir() {
+ // obtain (platform specific) application's data/settings directory from settings file
+ return QFileInfo(Application::getSettings().fileName()).absolutePath();
+}
+
+// ------------- getCurrentWorkingDir (static) -----------------
+const QString Core::getCurrentWorkingDir() {
+ return QDir::currentPath();
+}
+
+// ------------- getBugReport (static) -----------------
+const QString Core::getBugReport() {
+ QStringList BugReport;
+ QString breakLine("\n\n");
+
+ BugReport <<
+ "About you: \n[Present yourself and your project you're working on with CamiTK]" + breakLine;
+ BugReport <<
+ "Overview: \n[Rewrite here a larger and more detailed restatement of your summary]" + breakLine;
+ BugReport <<
+ "Steps to Reproduce: \n[Write here the step - by - step process to reproduce the bug, including file to test(you can attach file on BugZilla / the forum)]" + breakLine;
+ BugReport <<
+ "Actual VS Expected Result: \n[Write here the result of the step - by - step process and explain why it is not what you expected]" + breakLine;
+ BugReport <<
+ "Interpretation: \n[Write here your interpretation of this bug]" + breakLine;
+ BugReport <<
+ "CamiTK Version: \n\n" + Core::getConfig() + breakLine;
+
+ return BugReport.join("\n");
+}
+
+
+// ------------- isDebugBuild (static) -----------------
+const bool Core::isDebugBuild() {
+#ifdef QT_DEBUG
+ return true;
+#else
+ return false;
+#endif
+}
+
+
+// ----------------------------------------------------------------
+//
+// OBSOLETE PUBLIC METHODS
+//
+// TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated.
+// They are to be removed in CamiTK 4.0
+// ----------------------------------------------------------------
+
+
+// ------------- getComponentDir (static) -----------------
+//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
+const QString Core::getComponentDir() {
+ QDir appDir(getGlobalInstallDir());
+ appDir.cd("lib/" + QString(Core::shortVersion) + "/components");
+ return appDir.canonicalPath().toUtf8();
+}
+
+
+// ------------- getActionDir (static) -----------------
+//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
+const QString Core::getActionDir() {
+ QDir appDir(getGlobalInstallDir());
+ appDir.cd("lib/" + QString(Core::shortVersion) + "/actions");
+ return appDir.canonicalPath().toUtf8();
+}
+
+
+// ------------- getModuleDir (static) -----------------
+//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
+const QString Core::getModuleDir(const QString & subpath) {
+ QDir appDir(getGlobalInstallDir());
+ appDir.cd("lib/" + QString(Core::shortVersion) + "/" + subpath);
+ return appDir.canonicalPath().toUtf8();
+}
+
+// ------------- getLibDir (static) -----------------
+//TODO remove in CamiTK 4.0 CAMITK_DEPRECATED
+const QString Core::getCoreLibDir() {
+ return getGlobalInstallDir();
+}
+
+}
diff --git a/sdk/libraries/core/Core.h b/sdk/libraries/core/Core.h
index aa4d86c..04b2db0 100644
--- a/sdk/libraries/core/Core.h
+++ b/sdk/libraries/core/Core.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -108,6 +108,9 @@ public:
/// get the current working directory (during dev, this should be the build directory, which is an installation directory)
static const QString getCurrentWorkingDir();
+ /// get a well formed bug report with all necessary information
+ static const QString getBugReport();
+
///@}
/// @name runtime build information
diff --git a/sdk/libraries/core/ExtensionManager.cpp b/sdk/libraries/core/ExtensionManager.cpp
index 79e6148..7057e2f 100644
--- a/sdk/libraries/core/ExtensionManager.cpp
+++ b/sdk/libraries/core/ExtensionManager.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,6 +35,7 @@
#include <QtGui>
#include <QSettings>
#include <QApplication>
+#include <QMessageBox>
namespace camitk {
@@ -446,6 +447,8 @@ bool ExtensionManager::unloadActionExtension(QString fileName) {
}
//-- unregister extension
getActionExtensionMap().remove(fileName);
+ // -- unregister actions from application
+ Application::unregisterAllActions(ext);
//-- delete extensions (and all its actions)
delete ext;
return true;
diff --git a/sdk/libraries/core/ExtensionManager.h b/sdk/libraries/core/ExtensionManager.h
index e99bf45..ef3f1fb 100644
--- a/sdk/libraries/core/ExtensionManager.h
+++ b/sdk/libraries/core/ExtensionManager.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/HistoryComponent.cpp b/sdk/libraries/core/HistoryComponent.cpp
index 2c58e10..868b827 100644
--- a/sdk/libraries/core/HistoryComponent.cpp
+++ b/sdk/libraries/core/HistoryComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/HistoryComponent.h b/sdk/libraries/core/HistoryComponent.h
index ddc8a87..eb50c1b 100644
--- a/sdk/libraries/core/HistoryComponent.h
+++ b/sdk/libraries/core/HistoryComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/HistoryItem.cpp b/sdk/libraries/core/HistoryItem.cpp
index 76a2a31..12cc0a4 100644
--- a/sdk/libraries/core/HistoryItem.cpp
+++ b/sdk/libraries/core/HistoryItem.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/HistoryItem.h b/sdk/libraries/core/HistoryItem.h
index 5c6391c..6b49b5f 100644
--- a/sdk/libraries/core/HistoryItem.h
+++ b/sdk/libraries/core/HistoryItem.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/action/Action.cpp b/sdk/libraries/core/action/Action.cpp
index 64351c7..b8d6284 100644
--- a/sdk/libraries/core/action/Action.cpp
+++ b/sdk/libraries/core/action/Action.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -47,7 +47,7 @@ Action::Action ( ActionExtension* extension ) : QObject() {
isEmbedded = true;
actionWidget = NULL;
autoUpdateProperties = false;
- item = NULL;
+ item = NULL;
}
// -------------------- destructor --------------------
@@ -57,11 +57,10 @@ Action::~Action() {
delete prop;
parameterMap.clear();
- //delete History item
- if( item )
- {
- delete item;
- }
+ //delete History item
+ if( item ) {
+ delete item;
+ }
}
// -------------------- setName --------------------
@@ -358,5 +357,41 @@ bool Action::addParameter(Property * prop) {
return returnStatus;
}
+// ---------------------- applyTargetPosition ----------------------------
+void Action::applyTargetPosition(Component* input, Component* target) {
+ applyTargetPosition(input, target, Application::getDefaultTargetPositionningMethod());
+}
+
+// ---------------------- applyTargetPosition ----------------------------
+void Action::applyTargetPosition(Component *input, Component *target, Application::TargetPositionningMethods policy) {
+ switch (policy) {
+ case Application::NO_TRANSFORMATION:
+ target->setParentFrame(NULL);
+ break;
+ case Application::SUBFRAME:
+ target->setParentFrame(NULL); // reset the frame transform to Identity
+ target->setParentFrame(input);
+ break;
+ case Application::SAME_TRANSFORMATION:
+ default:
+ target->setParentFrame(NULL);
+ target->setTransform(input->getTransform());
+ break;
+ }
+}
+
+
}
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/sdk/libraries/core/action/Action.h b/sdk/libraries/core/action/Action.h
index 25e13c3..5fb968a 100644
--- a/sdk/libraries/core/action/Action.h
+++ b/sdk/libraries/core/action/Action.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,6 +29,7 @@
// -- Core stuff
#include "CamiTKAPI.h"
#include <HistoryItem.h>
+#include <Application.h>
#include <QSet>
#include <QWidget>
@@ -142,6 +143,30 @@ class Property;
* they are updated only when the user click on the apply button of the default widget.
* Use setAutoUpdateProperties(true) to automatically update the action's properties.
*
+ * \note if your action needs to react immediately to a change of value in one of its dynamic properties,
+ * you need to override the <tt>virtual bool event(QEvent* e)</tt> method. For instance:
+ * \code
+ * // ---------------------- event ----------------------------
+ * bool MyAction::event(QEvent * e) {
+ * if (e->type() == QEvent::DynamicPropertyChange) {
+ * e->accept();
+ * QDynamicPropertyChangeEvent *changeEvent = dynamic_cast<QDynamicPropertyChangeEvent *>(e);*
+ *
+ * if (!changeEvent)
+ * return false;
+ *
+ * // do something depending of the property that has changed
+ * QString msg("[" + changeEvent->propertyName() + "] changed to [" + property(changeEvent->propertyName()).toString() + "]");
+ * std::cout << msg.toStdString() << std::endl;
+ *
+ * return true;
+ * }
+ *
+ * // this is important to continue the process if the event is a different one
+ * return QObject::event(e);
+ *}
+ * \endcode
+ *
* \note if you use your own MyVerySpecialActionWidget class, make sure it conforms to this behaviour
* (you can get the desired behaviour by calling getAutoUpdateProperty()
*
@@ -340,6 +365,8 @@ public:
const ComponentList getTargets() const;
///@}
+ /// @name Property management
+ /// @{
/// auto update properties
bool getAutoUpdateProperties() const;
@@ -363,6 +390,25 @@ public:
* @return false if the Qt Meta Object property was added by this method (otherwise the property was already defined and true is returned if it was successfully updated)
*/
virtual bool addParameter(Property*);
+ ///}@
+
+ /// @name Frame management
+ /// @{
+ /**
+ * Change the target frame according to the default frame policy regarding the input's one.
+ * @param input The component refering to for the computation of the frame.
+ * @param target The component on which we apply the frame policy.
+ */
+ void applyTargetPosition(Component* input, Component* target);
+
+ /**
+ * Change the target frame according to a given frame policy regarding the input's one.
+ * @param input The component refering to for the computation of the frame.
+ * @param target The component on which we apply the frame policy.
+ * @param policy The frame policy to use on the target.
+ */
+ void applyTargetPosition(Component* input, Component* target, Application::TargetPositionningMethods policy);
+ /// }@
protected:
/** @name Generic action attributes setters
diff --git a/sdk/libraries/core/action/ActionExtension.cpp b/sdk/libraries/core/action/ActionExtension.cpp
index 1b400e1..165dd69 100644
--- a/sdk/libraries/core/action/ActionExtension.cpp
+++ b/sdk/libraries/core/action/ActionExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -60,11 +60,10 @@ ActionExtension::~ActionExtension() {
delete toDelete;
}
- //delete internationalization instance
- if ( translator )
- {
- delete translator;
- }
+ //delete internationalization instance
+ if ( translator ) {
+ delete translator;
+ }
}
// -------------------- registerAction --------------------
diff --git a/sdk/libraries/core/action/ActionExtension.h b/sdk/libraries/core/action/ActionExtension.h
index ea82326..a305ff5 100644
--- a/sdk/libraries/core/action/ActionExtension.h
+++ b/sdk/libraries/core/action/ActionExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -104,8 +104,8 @@ private:
/// the shared lib (.so, .dll or .dylib) used to instanciate the ComponentExtension subclass instance
QString dynamicLibraryFileName;
- /// Provide internationalization support for text output.
- QTranslator* translator;
+ /// Provide internationalization support for text output.
+ QTranslator* translator;
};
}
diff --git a/sdk/libraries/core/action/ActionWidget.cpp b/sdk/libraries/core/action/ActionWidget.cpp
index 465db98..d1bf2cb 100644
--- a/sdk/libraries/core/action/ActionWidget.cpp
+++ b/sdk/libraries/core/action/ActionWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,10 +31,12 @@
#include <Application.h>
#include <MainWindow.h>
+#include <QToolBox>
+
namespace camitk {
// -------------------- constructor --------------------
-ActionWidget::ActionWidget(Action *action): QFrame() {
+ActionWidget::ActionWidget(Action * action): QFrame() {
myAction = action;
// create the property editor tab itself
@@ -43,14 +45,13 @@ ActionWidget::ActionWidget(Action *action): QFrame() {
QVBoxLayout * widgetLayout = new QVBoxLayout;
// Action's name and icon
- QHBoxLayout *nameLayout = new QHBoxLayout;
- QLabel *iconPicture = new QLabel;
+ QLabel * iconPicture = new QLabel;
iconPicture->setPixmap(myAction->getIcon());
- iconPicture->setSizePolicy(QSizePolicy::Fixed, QSizePolicy::Fixed);
+ actionNameLabel = new QLabel("<b>" + myAction->getName() + "</b>");
+ QHBoxLayout * nameLayout = new QHBoxLayout;
nameLayout->addWidget(iconPicture);
- actionNameLabel= new QLabel("<h3><b>" + myAction->getName() + "</b></h3>");
- actionNameLabel->setSizePolicy(QSizePolicy::Fixed, QSizePolicy::Fixed);
nameLayout->addWidget(actionNameLabel);
+
widgetLayout->addLayout(nameLayout);
// get the proper text height
@@ -59,52 +60,54 @@ ActionWidget::ActionWidget(Action *action): QFrame() {
iconPicture->setFixedSize(actionNameLabel->height(), actionNameLabel->height());
iconPicture->setScaledContents(true);
+ // create the surrounding toolbox
+ QToolBox * widgetToolbox = new QToolBox;
+
// Action description presentation
- descriptionLabelScrollArea = new QScrollArea();
+ QScrollArea * descriptionLabelScrollArea = new QScrollArea();
descriptionLabelScrollArea->setWidgetResizable(true);
- descriptionLabelScrollArea->setSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::Expanding);
- descriptionLabelScrollArea->setHorizontalScrollBarPolicy(Qt::ScrollBarAlwaysOff);
- descriptionLabelScrollArea->setVerticalScrollBarPolicy(Qt::ScrollBarAsNeeded);
- descriptionLabel = new QLabel("<b>Description :</b> <br />" + myAction->getDescription());
+ descriptionLabel = new QLabel(myAction->getDescription());
descriptionLabel->setFrameStyle(QFrame::StyledPanel | QFrame::Sunken);
descriptionLabel->setTextFormat(Qt::RichText);
descriptionLabel->setLineWidth(3);
descriptionLabel->setWordWrap(true);
+ descriptionLabel->setSizePolicy(QSizePolicy::Ignored, QSizePolicy::Ignored);
+ descriptionLabel->setScaledContents(true);
descriptionLabelScrollArea->setWidget(descriptionLabel);
- widgetLayout->addWidget(descriptionLabelScrollArea);
+
+ // BLACK DOWN-POINTING SMALL TRIANGLE unicode character is U+25BE
+ widgetToolbox->addItem(descriptionLabelScrollArea, tr("Description ") + QChar(0xBE,0x25) );
// Targets list display
- targetLabelScrollArea = new QScrollArea();
+ QScrollArea * targetLabelScrollArea = new QScrollArea();
targetLabelScrollArea->setWidgetResizable(true);
- targetLabelScrollArea->setSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::Minimum);
- targetLabelScrollArea->setHorizontalScrollBarPolicy(Qt::ScrollBarAlwaysOff);
- targetLabelScrollArea->setVerticalScrollBarPolicy(Qt::ScrollBarAsNeeded);
targetLabel = new QLabel(getTargetLabel());
targetLabel->setFrameStyle(QFrame::StyledPanel | QFrame::Sunken);
targetLabel->setLineWidth(3);
targetLabel->setWordWrap(true);
+ targetLabel->setSizePolicy(QSizePolicy::Ignored, QSizePolicy::Ignored);
+ targetLabel->setScaledContents(true);
targetLabelScrollArea->setWidget(targetLabel);
- widgetLayout->addWidget(targetLabelScrollArea);
+
+ widgetToolbox->addItem(targetLabelScrollArea, tr("Targets ")+ QChar(0xBE,0x25) );
// first the property editor
objectController = new ObjectController(this, ObjectController::BUTTON);
- objectController->setSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::MinimumExpanding);
- widgetLayout->addWidget(objectController);
+ widgetToolbox->addItem(objectController, tr("Parameters ")+ QChar(0xBE,0x25) );
+ widgetToolbox->setCurrentWidget(objectController);
+
+ widgetLayout->addWidget(widgetToolbox);
+
// then the buttons
buttonFrame = new QFrame();
- QHBoxLayout *buttonLayout = new QHBoxLayout;
-// buttonLayout->setSizeConstraint(QHBoxLayout::SetMaximumSize);
-
- QPushButton *applyButton = new QPushButton("Apply");
- applyButton->setSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::Fixed);
+ QHBoxLayout * buttonLayout = new QHBoxLayout;
+ QPushButton * applyButton = new QPushButton(tr("Apply"));
buttonLayout->addWidget(applyButton);
-
- QPushButton *revertButton = new QPushButton("Revert");
- revertButton->setSizePolicy(QSizePolicy::MinimumExpanding, QSizePolicy::Fixed);
+ QPushButton * revertButton = new QPushButton(tr("Revert"));
buttonLayout->addWidget(revertButton);
-
buttonFrame->setLayout(buttonLayout);
+
widgetLayout->addWidget(buttonFrame);
// connect the buttons
@@ -119,7 +122,6 @@ ActionWidget::ActionWidget(Action *action): QFrame() {
// Now tell the ObjectController that this Action itself is the one to manage
objectController->setObject(myAction);
- objectController->setMaximumHeight(objectController->sizeHint().height());
setLayout(widgetLayout);
}
@@ -154,10 +156,13 @@ void ActionWidget::updateTargets() {
// -------------------- getTargetLabel --------------------
QString ActionWidget::getTargetLabel() {
- QString targetNames = tr("<b> Target(s) to apply the action on: </b> <ul>");
+ QString targetNames = "<ul>";
+
foreach (Component * comp, myAction->getTargets()) {
targetNames += "<li> " + comp->getName() + "<i> (" + comp->metaObject()->className() + ") </i>" + "</li>";
}
+
+ targetNames += "</ul>";
return targetNames;
}
diff --git a/sdk/libraries/core/action/ActionWidget.h b/sdk/libraries/core/action/ActionWidget.h
index aa006eb..d595f7d 100644
--- a/sdk/libraries/core/action/ActionWidget.h
+++ b/sdk/libraries/core/action/ActionWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -107,17 +107,12 @@ private:
/// the target list label
QLabel *targetLabel;
- /// the target label scroll area, which allows its content widget to be vertically scrollable
- QScrollArea *targetLabelScrollArea;
-
/// the action name displayed in the widget
QLabel *actionNameLabel;
/// the description of the action displayed in the widget
QLabel *descriptionLabel;
- /// the description label scroll area, which allows its content widget to be vertically scrollable
- QScrollArea *descriptionLabelScrollArea;
/// this frame contains the Apply/Revert buttons and can be hide using setButtonVisibility()
QFrame *buttonFrame;
diff --git a/sdk/libraries/core/application/Application.cpp b/sdk/libraries/core/application/Application.cpp
index fa17460..932e315 100644
--- a/sdk/libraries/core/application/Application.cpp
+++ b/sdk/libraries/core/application/Application.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -32,6 +32,8 @@
#include "Action.h"
#include "HistoryComponent.h"
#include "ImageComponent.h"
+#include "Property.h"
+#include "PropertyObject.h"
// -- QT stuff
#include <QSettings>
@@ -56,12 +58,12 @@ QSettings Application::settings(QSettings::IniFormat, QSettings::UserScope, "Cam
QList<QFileInfo> Application::recentDocuments;
QDir Application::lastUsedDirectory;
int Application::maxRecentDocuments = 0;
-QString Application::name=Core::version;
+QString Application::name = Core::version;
// ----------------- constructor --------------------
-Application::Application(QString name, int & theArgc, char ** theArgv, bool autoloadExtensions, bool registerFileExtension): QApplication(theArgc, theArgv) {
+Application::Application(QString name, int & theArgc, char ** theArgv, bool autoloadExtensions, bool registerFileExtension) : QApplication(theArgc, theArgv) {
this->name = name;
- QApplication::setApplicationName(name); // associate the QProperty to the Qt meta-object
+ QApplication::setApplicationName(name); // associate the QProperty to the Qt meta-object
argc = theArgc;
argv = theArgv;
@@ -84,21 +86,22 @@ Application::Application(QString name, int & theArgc, char ** theArgv, bool auto
}
// initialize recent/lastUsedDirectory documents from the settings
- settings.beginGroup ( name + ".Application" );
+ settings.beginGroup(name + ".Application");
// max memorized recent documents
- maxRecentDocuments = settings.value( "maxRecentDocuments", 10).toInt();
+ maxRecentDocuments = settings.value("maxRecentDocuments", 10).toInt();
// the recent documents
- QStringList recentDoc = settings.value ( "recentDocuments" ).toStringList();
+ QStringList recentDoc = settings.value("recentDocuments").toStringList();
recentDocuments.clear();
- foreach ( QString fileName, recentDoc ) {
- recentDocuments.append ( fileName );
+
+ foreach (QString fileName, recentDoc) {
+ recentDocuments.append(fileName);
}
// the last used directory
- QDir defaultDir ( Core::getTestDataDir() );
- lastUsedDirectory = settings.value ( "lastUsedDirectory", defaultDir.absolutePath() ).toString();
+ QDir defaultDir(Core::getTestDataDir());
+ lastUsedDirectory = settings.value("lastUsedDirectory", defaultDir.absolutePath()).toString();
// register file association with this application for opening
@@ -117,10 +120,12 @@ Application::Application(QString name, int & theArgc, char ** theArgv, bool auto
fileExtensionForbidden.append("bmp");
fileExtensionForbidden.append("tif");
fileExtensionForbidden.append("tiff");
+
foreach (QString extensionFile, ExtensionManager::getFileExtensions()) {
// check the application can handle new file type
- if (!fileExtensionsAlreadyRegistered.contains(extensionFile) && !fileExtensionForbidden.contains(extensionFile))
+ if (!fileExtensionsAlreadyRegistered.contains(extensionFile) && !fileExtensionForbidden.contains(extensionFile)) {
newFileExtensions.append(extensionFile);
+ }
}
// check if the application handles new file types
@@ -129,31 +134,38 @@ Application::Application(QString name, int & theArgc, char ** theArgv, bool auto
// prompt the user if he wants them to be associated with this application for opening
if (ExtensionManager::promptRegisterFileExtensions(newFileExtensions)) {
// user agrees : register each new file type
- foreach (QString fileExtensionToRegister, newFileExtensions)
- ExtensionManager::registerFileExtension(fileExtensionToRegister);
+ foreach (QString fileExtensionToRegister, newFileExtensions) {
+ ExtensionManager::registerFileExtension(fileExtensionToRegister);
+ }
}
// save the file types in the application's settings in order not to be prompt again
fileExtensionsAlreadyRegistered.append(newFileExtensions);
settings.setValue("fileExtensionsRegistered", fileExtensionsAlreadyRegistered);
}
+
#endif
}
+
settings.endGroup();
// Load the resources of the application (mainly its translation file)
initResources();
+
+ // Add application properties
+ createProperties();
}
// ----------------- destructor --------------------
Application::~Application() {
// do not use the destructor to clean or free resources, but quitting()
- if (translator)
- {
- //delete instance of internationalization support
- delete translator;
- }
+ if(translator)
+ delete translator; //delete instance of internationalization support
+
+ // delete property object and all its properties !
+ if(propertyObject)
+ delete propertyObject;
}
@@ -176,35 +188,70 @@ void Application::quitting() {
}
// ----------------- setMainWindow --------------------
-void Application::setMainWindow(MainWindow* mw) {
- if (mw==NULL)
+void Application::setMainWindow(MainWindow * mw) {
+ if (mw == NULL) {
mainWindow = new MainWindow(name);
- else
+ } else {
mainWindow = mw;
+ }
// by default redirect to console
mainWindow->redirectToConsole(true);
+ // Set the locale to C for using dot as decimal point dispite locale
+ // Set utf8 for output to enforce using utf8 strings.
+ //
+ // see http://doc.qt.io/qt-5/qcoreapplication.html#locale-settings
+ // and various threads or forum discussions such as http://stackoverflow.com/questions/25661295/why-does-qcoreapplication-call-setlocalelc-all-by-default-on-unix-linux
+ char * statusOk = setlocale(LC_CTYPE, "C.UTF-8");
+
+ if (statusOk != NULL) {
+ statusOk = setlocale(LC_NUMERIC, "C.UTF-8");
+ }
+
+ if (statusOk != NULL) {
+ statusOk = setlocale(LC_TIME, "C.UTF-8");
+ }
+
+ // try without UTF-8
+ if (!statusOk) {
+ statusOk = setlocale(LC_CTYPE, "C");
+
+ if (statusOk != NULL) {
+ statusOk = setlocale(LC_NUMERIC, "C");
+ }
+
+ if (statusOk != NULL) {
+ statusOk = setlocale(LC_TIME, "C");
+ }
+
+ if (statusOk == NULL) {
+ CAMITK_ERROR("Application", "setMainWindow (initialization)", "Could not set the locale to C. This is mandatory to enforce using dot as decimal separator (platform independency)." << std::endl
+ << "This can cause a lot of trouble for numerics I/O... Beware of decimal dots..." << std::endl);
+ }
+ }
}
// ----------------- getMainWindow --------------------
-MainWindow* Application::getMainWindow() {
- if (!mainWindow)
- dynamic_cast<Application*>(qApp)->setMainWindow(NULL);
+MainWindow * Application::getMainWindow() {
+ if (!mainWindow) {
+ dynamic_cast<Application *>(qApp)->setMainWindow(NULL);
+ }
return mainWindow;
}
// ----------------- getSettings --------------------
-QSettings& Application::getSettings() {
+QSettings & Application::getSettings() {
return settings;
}
// ----------------- exec --------------------
int Application::exec() {
- if (!mainWindow)
- dynamic_cast<Application*>(qApp)->setMainWindow(NULL);
+ if (!mainWindow) {
+ dynamic_cast<Application *>(qApp)->setMainWindow(NULL);
+ }
mainWindow->aboutToShow();
mainWindow->show();
@@ -248,9 +295,9 @@ void Application::setProgressBarValue(int value) {
}
// ----------------- vtkProgressFunction --------------------
-void Application::vtkProgressFunction(vtkObject* caller, long unsigned int eventId, void* clientData, void* callData) {
+void Application::vtkProgressFunction(vtkObject * caller, long unsigned int eventId, void * clientData, void * callData) {
QProgressBar * progress = mainWindow->getProgressBar();
- vtkAlgorithm* filter = static_cast<vtkAlgorithm*>(caller);
+ vtkAlgorithm * filter = static_cast<vtkAlgorithm *>(caller);
int progressVal = filter->GetProgress() * 100;
if (progress) {
@@ -260,33 +307,35 @@ void Application::vtkProgressFunction(vtkObject* caller, long unsigned int event
// ----------------- addRecentDocument --------------------
void Application::addRecentDocument(QFileInfo filename) {
- recentDocuments.removeOne ( filename );
- recentDocuments.append ( filename );
+ recentDocuments.removeOne(filename);
+ recentDocuments.append(filename);
// update the last used dir
lastUsedDirectory = recentDocuments.last().absoluteDir();
// save settings (the last 10 recent files by default)
- settings.beginGroup ( name + ".Application" );
+ settings.beginGroup(name + ".Application");
// max memorized recent documents
- settings.setValue( "maxRecentDocuments", maxRecentDocuments);
+ settings.setValue("maxRecentDocuments", maxRecentDocuments);
// save all up to maxRecentDocuments
int firstOpened = recentDocuments.size() - maxRecentDocuments;
- if ( firstOpened < 0 )
+ if (firstOpened < 0) {
firstOpened = 0;
+ }
QStringList recentDoc;
- for ( int i = firstOpened; i < recentDocuments.size(); i++ )
- recentDoc.append ( recentDocuments[i].absoluteFilePath() );
+ for (int i = firstOpened; i < recentDocuments.size(); i++) {
+ recentDoc.append(recentDocuments[i].absoluteFilePath());
+ }
- settings.setValue ( "recentDocuments", recentDoc );
+ settings.setValue("recentDocuments", recentDoc);
// last used directory
- settings.setValue ( "lastUsedDirectory", lastUsedDirectory.absolutePath() );
+ settings.setValue("lastUsedDirectory", lastUsedDirectory.absolutePath());
settings.endGroup();
}
@@ -313,9 +362,9 @@ const int Application::getMaxRecentDocuments() {
// -------------------- open --------------------
Component * Application::open(const QString & fileName) {
// set waiting cursor
- setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
+ setOverrideCursor(QCursor(Qt::WaitCursor));
- Component *comp = NULL;
+ Component * comp = NULL;
// -- Get the corresponding extension... (compatible format)
QString extension = QFileInfo(fileName).suffix();
@@ -329,7 +378,7 @@ Component * Application::open(const QString & fileName) {
// the complete base name consists of all characters in the file up to (but not including) the last '.' character.
QString baseName = QFileInfo(fileName).completeBaseName();
ext = QFileInfo(baseName).suffix();
- extension = ext+"."+extension;
+ extension = ext + "." + extension;
cp = ExtensionManager::getComponentExtensions().value(extension);
}
@@ -348,30 +397,37 @@ Component * Application::open(const QString & fileName) {
comp = cp->open(QFileInfo(fileName).absoluteFilePath());
// -- notify the application
- if ( comp == NULL ) {
- showStatusBarMessage( tr ( "Error loading file:" ) + fileName );
+ if (comp == NULL) {
+ showStatusBarMessage(tr("Error loading file:") + fileName);
} else {
// add the document to the recent list
addRecentDocument(fileName);
- showStatusBarMessage( tr ( QString("File " + fileName + " successfully loaded").toStdString().c_str() ) );
+ showStatusBarMessage(tr(QString("File " + fileName + " successfully loaded").toStdString().c_str()));
+
+ if (!comp->isTopLevel()) {
+ CAMITK_WARNING("Application", "Open", "Instanciating a NON top level component.")
+ }
// refresh all viewers
refresh();
}
- } catch (AbortException & e) {
+ } catch
+ (AbortException & e) {
// restore the normal cursor/progress bar
restoreOverrideCursor();
resetProgressBar();
QMessageBox::warning(NULL, "Opening aborted...", tr("Extension: ") + cp->getName() + tr("<br>Error: cannot open file ") + fileName + tr("<br>Reason:<br>") + e.what());
comp = NULL;
- } catch (std::exception& e) {
+ } catch
+ (std::exception & e) {
// restore the normal cursor/progress bar
restoreOverrideCursor();
resetProgressBar();
QMessageBox::warning(NULL, "Opening aborted...", tr("Extension ") + cp->getName() + tr("<br>Error: cannot open file ") + fileName + tr("<br>External:<br>") + tr("This exception was not generated directly by the extension,<br>but by one of its dependency.<br>Reason:<br>") + e.what());
comp = NULL;
- } catch (...) {
+ } catch
+ (...) {
// restore the normal cursor/progress bar
restoreOverrideCursor();
resetProgressBar();
@@ -384,21 +440,17 @@ Component * Application::open(const QString & fileName) {
restoreOverrideCursor();
resetProgressBar();
- if (!comp->isTopLevel()) {
- CAMITK_WARNING("Application", "Open", "Instanciating a NON top level component.")
- }
-
return comp;
}
// -------------------- openDirectory --------------------
Component * Application::openDirectory(const QString & dirName, const QString & pluginName) {
// set waiting cursor
- setOverrideCursor ( QCursor ( Qt::WaitCursor ) );
+ setOverrideCursor(QCursor(Qt::WaitCursor));
- Component *comp = NULL;
+ Component * comp = NULL;
- ComponentExtension *cp = ExtensionManager::getDataDirectoryComponents().value(pluginName);
+ ComponentExtension * cp = ExtensionManager::getDataDirectoryComponents().value(pluginName);
if (cp != NULL) {
// Ask the plugin instance to create the Component instance
@@ -406,20 +458,22 @@ Component * Application::openDirectory(const QString & dirName, const QString &
comp = cp->open(QDir(dirName).absolutePath());
// -- notify the application
- if ( comp == NULL ) {
- showStatusBarMessage( tr ( "Error loading directory:" ) + dirName );
+ if (comp == NULL) {
+ showStatusBarMessage(tr("Error loading directory:") + dirName);
} else {
- showStatusBarMessage( tr ( QString("Directory " + dirName + " successfully loaded").toStdString().c_str() ) );
+ showStatusBarMessage(tr(QString("Directory " + dirName + " successfully loaded").toStdString().c_str()));
// refresh all viewers
refresh();
}
- } catch (AbortException & e) {
+ } catch
+ (AbortException & e) {
// restore the normal cursor/progress bar
restoreOverrideCursor();
resetProgressBar();
QMessageBox::warning(NULL, "Opening aborted...", tr("Extension: ") + cp->getName() + tr("<br>Error: cannot open file ") + dirName + tr("<br>Reason:<br>") + e.what());
comp = NULL;
- } catch (...) {
+ } catch
+ (...) {
// restore the normal cursor/progress bar
restoreOverrideCursor();
resetProgressBar();
@@ -447,44 +501,47 @@ Component * Application::openDirectory(const QString & dirName, const QString &
}
// -------------------------- close ------------------------------
-bool Application::close ( Component *comp ) {
+bool Application::close(Component * comp) {
int keyPressed = QMessageBox::Discard;
bool saveOk = true;
QString compName = comp->getName();
// check if the top-level component needs to be saved
- if ( comp->getModified() ) {
+ if (comp->getModified()) {
// dManager has changed, propose to save it
- keyPressed = QMessageBox::warning ( NULL, "Closing...", tr("Component \"") + compName + tr("\" has been modified.\nDo you want to save your change before closing?"), QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel, QMessageBox::Save);
+ keyPressed = QMessageBox::warning(NULL, "Closing...", tr("Component \"") + compName + tr("\" has been modified.\nDo you want to save your change before closing?"), QMessageBox::Save | QMessageBox::Discard | QMessageBox::Cancel, QMessageBox::Save);
// Do we have to save or not?
- if ( keyPressed == QMessageBox::Save )
- saveOk = save ( comp );
+ if (keyPressed == QMessageBox::Save) {
+ saveOk = save(comp);
+ }
}
// Do we have to close or not?
- if ( saveOk && keyPressed != QMessageBox::Cancel ) {
+ if (saveOk && keyPressed != QMessageBox::Cancel) {
// delete the data
delete comp;
+ comp = NULL;
+
// refresh all viewers
refresh();
- showStatusBarMessage( compName + tr ( " successfully closed..." ));
+ showStatusBarMessage(compName + tr(" successfully closed..."));
return true;
} else {
// return that the close was cancelled
- showStatusBarMessage( tr ( "Close cancelled..." ));
+ showStatusBarMessage(tr("Close cancelled..."));
return false;
}
}
// -------------------- save --------------------
-bool Application::save(Component* component) {
+bool Application::save(Component * component) {
// no name -> save as
if (component->getFileName().isEmpty()) {
- return (getAction("Save As")->apply()==Action::SUCCESS);
+ return (getAction("Save As")->apply() == Action::SUCCESS);
}
// Get the saving extension...
@@ -504,20 +561,11 @@ bool Application::save(Component* component) {
QApplication::setOverrideCursor(QCursor(Qt::WaitCursor));
- if(ImageComponent* imgComp = dynamic_cast<ImageComponent*>(component)) {
- // If we deal with an ImageComponent, prepare it for saving
- imgComp->prepareForSaving();
- }
-
if (cp->save(component)) {
- if(ImageComponent* imgComp = dynamic_cast<ImageComponent*>(component)) {
- // If we deal with an ImageComponent, revert changes made for saving it
- imgComp->postSaving();
- }
// update the last used dir
setLastUsedDirectory(QFileInfo(component->getFileName()).absoluteDir());
- showStatusBarMessage( component->getName() + tr ( " successfully saved..." ));
+ showStatusBarMessage(component->getName() + tr(" successfully saved..."));
QApplication::restoreOverrideCursor();
return true;
@@ -530,8 +578,8 @@ bool Application::save(Component* component) {
// -------------------- getActionMap --------------------
-QMap<QString, Action*> & Application::getActionMap() {
- static QMap<QString, Action*> actionMap;
+QMap<QString, Action *> & Application::getActionMap() {
+ static QMap<QString, Action *> actionMap;
return actionMap;
}
@@ -542,10 +590,10 @@ const ActionList Application::getActions() {
}
// -------------------- registerAllActions --------------------
-int Application::registerAllActions(ActionExtension* ext) {
+int Application::registerAllActions(ActionExtension * ext) {
int registered = 0;
- foreach(Action *action, ext->getActions()) {
+ foreach (Action * action, ext->getActions()) {
// check if an action with same name was not already registered
if (getActionMap().contains(action->getName())) {
CAMITK_ERROR("Application", "registerAllActions", "Cannot register action: " << action->getName().toStdString()
@@ -558,11 +606,24 @@ int Application::registerAllActions(ActionExtension* ext) {
registered++;
}
}
+
+ return registered;
+}
+
+// -------------------- unregisterAllActions --------------------
+int Application::unregisterAllActions(ActionExtension * ext) {
+ int registered = 0;
+
+ foreach(Action * action, ext->getActions()) {
+ getActionMap().remove(action->getName());
+ registered++;
+ }
+
return registered;
}
// ---------------- actionLessThan ----------------
-bool actionLessThan(const camitk::Action* a1, const camitk::Action * a2) {
+bool actionLessThan(const camitk::Action * a1, const camitk::Action * a2) {
// This method is needed by qsort in the sort method to sort action by name
return a1->getName() < a2->getName();
}
@@ -582,14 +643,16 @@ Action * Application::getAction(QString name) {
}
// ---------------- getActions ----------------
-ActionList Application::getActions(Component *component) {
+ActionList Application::getActions(Component * component) {
ActionSet actions;
if (component) {
QStringList componentHierarchy = component->getHierarchy();
+
foreach (Action * currentAct, Application::getActions()) {
- if (componentHierarchy.contains(currentAct->getComponent()))
+ if (componentHierarchy.contains(currentAct->getComponent())) {
actions.insert(currentAct);
+ }
}
} else {
foreach (Action * currentAct, Application::getActions()) {
@@ -609,9 +672,11 @@ ActionList Application::getActions(ComponentList cList) {
return getActions(NULL);
} else {
ActionSet actions;
+
foreach (Component * currentComp, cList) {
actions += getActions(currentComp).toSet();
}
+
return sort(actions);
}
}
@@ -623,7 +688,8 @@ ActionList Application::getActions(ComponentList selComp, QString tag) {
// now check possibleActions considering the tag value
ActionList actions;
- foreach(Action * action, possibleActions) {
+
+ foreach (Action * action, possibleActions) {
if (action->getTag().contains(tag)) {
actions.append(action);
}
@@ -636,7 +702,7 @@ ActionList Application::getActions(ComponentList selComp, QString tag) {
}
// ---------- isAlive ----------
-bool Application::isAlive(Component *comp) {
+bool Application::isAlive(Component * comp) {
return getAllComponents().contains(comp);
}
@@ -644,22 +710,27 @@ bool Application::isAlive(Component *comp) {
bool Application::hasModified() {
// look for a top level component that has been modified
int i = 0;
- while (i < getTopLevelComponents().size() && !getTopLevelComponents()[i]->getModified())
+
+ while (i < getTopLevelComponents().size() && !getTopLevelComponents() [i]->getModified()) {
i++;
+ }
- return(i < getTopLevelComponents().size());
+ return (i < getTopLevelComponents().size());
}
// -------------------- addComponent --------------------
-void Application::addComponent(Component *comp) {
+void Application::addComponent(Component * comp) {
getAllComponentList().append(comp);
+
if (comp->getParentComponent() == NULL)
// this a top level component
+ {
getTopLevelComponentList().append(comp);
+ }
}
// -------------------- removeComponent --------------------
-void Application::removeComponent(Component *comp) {
+void Application::removeComponent(Component * comp) {
getAllComponentList().removeAll(comp);
getTopLevelComponentList().removeAll(comp);
getSelectedComponentList().removeAll(comp);
@@ -702,21 +773,24 @@ const ComponentList & Application::getSelectedComponents() {
}
// -------------------- setSelected --------------------
-void Application::setSelected(Component* component, bool isSelected) {
+void Application::setSelected(Component * component, bool isSelected) {
// in case the component is selected again, put it in the end
// therefore the correct processing is :
// 1. remove component from the list
// 2. if isSelected is true, append
getSelectedComponentList().removeAll(component);
- if (isSelected)
+
+ if (isSelected) {
getSelectedComponentList().append(component);
+ }
}
// -------------------- clearSelectedComponents --------------------
void Application::clearSelectedComponents() {
- foreach(Component *comp, getSelectedComponentList()) {
+ foreach (Component * comp, getSelectedComponentList()) {
comp->setSelected(false);
}
+
getSelectedComponentList().clear();
}
@@ -740,13 +814,13 @@ HistoryItem Application::removeLastHistoryItem() {
// -------------------- saveHistoryAsSXML --------------------
void Application::saveHistoryAsSXML() {
// Empty history => do nothing
- if(Application::getHistory().isEmpty()) {
+ if (Application::getHistory().isEmpty()) {
cerr << "No history to save, aborting ..." << endl;
return;
}
// Create the XML document
- QDomDocument *doc = new QDomDocument();
+ QDomDocument * doc = new QDomDocument();
// root element
QDomElement root = doc->createElement("scxml");
@@ -760,7 +834,7 @@ void Application::saveHistoryAsSXML() {
// SXML always contains an Initialize element which describe the pipeline
QDomElement initializeElt = doc->createElement("state");
root.appendChild(initializeElt);
- initializeElt.setAttribute("id","Initialize");
+ initializeElt.setAttribute("id", "Initialize");
QDomElement initializeElt_onEntry = doc->createElement("onentry");
initializeElt.appendChild(initializeElt_onEntry);
QDomElement initializeElt_onState = doc->createElement("camitk:onState");
@@ -782,157 +856,177 @@ void Application::saveHistoryAsSXML() {
QList<HistoryComponent> allCreatedComponents;
// Main loop accross the different actions in the history
- for(int i=0; i<Application::getHistory().size(); i++) {
+ for (int i = 0; i < Application::getHistory().size(); i++) {
// Get the current history element, i.e. the action of the pipeline with its parameters
- HistoryItem crtHistoryItem = Application::getHistory().at(i);
- Action *crtAction = Application::getAction(crtHistoryItem.getName());
+ HistoryItem historyItem = Application::getHistory().at(i);
+ Action * action = Application::getAction(historyItem.getName());
// state
- QDomElement crtElement_state = doc->createElement("state");
- root.appendChild(crtElement_state);
- crtElement_state.setAttribute("id", "Action " + QString::number(i+1));
+ QDomElement stateElement = doc->createElement("state");
+ root.appendChild(stateElement);
+ stateElement.setAttribute("id", "Action " + QString::number(i + 1));
// onEntry
- QDomElement crtElement_onEntry = doc->createElement("onentry");
- crtElement_state.appendChild(crtElement_onEntry);
- QDomElement crtElement_onState = doc->createElement("camitk:onState");
- crtElement_onEntry.appendChild(crtElement_onState);
+ QDomElement onentryElement = doc->createElement("onentry");
+ stateElement.appendChild(onentryElement);
+ QDomElement onStateElement = doc->createElement("camitk:onState");
+ onentryElement.appendChild(onStateElement);
// action description
- QDomElement crtElement_description = doc->createElement("camitk:description");
- QDomText crtElement_descriptionText = doc->createTextNode(crtAction->getDescription());
- crtElement_description.appendChild(crtElement_descriptionText);
- crtElement_onState.appendChild(crtElement_description);
+ QDomElement descriptionElement = doc->createElement("camitk:description");
+ QDomText descriptionText = doc->createTextNode(action->getDescription());
+ descriptionElement.appendChild(descriptionText);
+ onStateElement.appendChild(descriptionElement);
// action name & parameters
- QDomElement crtElement_action = doc->createElement("camitk:action");
- crtElement_onState.appendChild(crtElement_action);
+ QDomElement actionElement = doc->createElement("camitk:action");
+ onStateElement.appendChild(actionElement);
// action name
- QDomElement crtElement_actionName = doc->createElement("camitk:name");
- crtElement_action.appendChild(crtElement_actionName);
- pipelineDescription.append("<li>" + crtAction->getName() + "</li>");
- QDomText crtElement_actionNameText = doc->createTextNode(crtAction->getName());
- crtElement_actionName.appendChild(crtElement_actionNameText);
+ QDomElement actionElementName = doc->createElement("camitk:name");
+ actionElement.appendChild(actionElementName);
+ pipelineDescription.append("<li>" + action->getName() + "</li>");
+ QDomText actionElementNameText = doc->createTextNode(action->getName());
+ actionElementName.appendChild(actionElementNameText);
+
// action parameters
- if (!crtAction->dynamicPropertyNames().isEmpty()) {
- QDomElement crtElementAction_parameters = doc->createElement("camitk:parameters");
- crtElement_action.appendChild(crtElementAction_parameters);
- foreach (QByteArray crtParameter, crtAction->dynamicPropertyNames()) {
- QDomElement crtElementAction_parameter = doc->createElement("camitk:parameter");
- crtElementAction_parameters.appendChild(crtElementAction_parameter);
- crtElementAction_parameter.setAttribute("name", QString(crtParameter));
- crtElementAction_parameter.setAttribute("type", QVariant::typeToName(crtAction->property(crtParameter).type()));
- crtElementAction_parameter.setAttribute("value", crtAction->property(crtParameter.data()).toString());
+ if (!action->dynamicPropertyNames().isEmpty()) {
+ QDomElement parametersElement = doc->createElement("camitk:parameters");
+ actionElement.appendChild(parametersElement);
+
+ foreach (QByteArray actionParameter, action->dynamicPropertyNames()) {
+ QDomElement parameterElement = doc->createElement("camitk:parameter");
+ parametersElement.appendChild(parameterElement);
+ parameterElement.setAttribute("name", QString(actionParameter));
+ parameterElement.setAttribute("type", QVariant::typeToName(action->property(actionParameter).type()));
+ parameterElement.setAttribute("value", action->property(actionParameter.data()).toString());
}
}
- QDomElement crtElement_actionParam = doc->createElement("camitk:parameters");
- crtElement_action.appendChild(crtElement_actionParam);
+ QDomElement actionElementParam = doc->createElement("camitk:parameters");
+ actionElement.appendChild(actionElementParam);
// action input components
- if (!crtHistoryItem.getInputHistoryComponents().isEmpty()) {
- QDomElement crtElement_actionInputComp = doc->createElement("camitk:inputs");
- crtElement_action.appendChild(crtElement_actionInputComp);
+ if (!historyItem.getInputHistoryComponents().isEmpty()) {
+ QDomElement actionElementInputComp = doc->createElement("camitk:inputs");
+ actionElement.appendChild(actionElementInputComp);
- for(int j=0; j<crtHistoryItem.getInputHistoryComponents().size(); j++) {
- QDomElement crtElement_crtInputComp = doc->createElement("camitk:component");
+ for (int j = 0; j < historyItem.getInputHistoryComponents().size(); j++) {
+ QDomElement componentElement = doc->createElement("camitk:component");
// determine the type of each input component (image, meshes or other)
- HistoryComponent crtInputHistoryComp = crtHistoryItem.getInputHistoryComponents().at(j);
- switch(crtInputHistoryComp.getType()) {
+ HistoryComponent inputHistoryComponents = historyItem.getInputHistoryComponents().at(j);
+
+ switch (inputHistoryComponents.getType()) {
case HistoryComponent::IMAGE_COMPONENT:
- crtElement_crtInputComp.setAttribute("type", "ImageComponent");
+ componentElement.setAttribute("type", "ImageComponent");
break;
+
case HistoryComponent::MESH_COMPONENT:
- crtElement_crtInputComp.setAttribute("type", "MeshComponent");
+ componentElement.setAttribute("type", "MeshComponent");
break;
+
case HistoryComponent::OTHER:
default:
- crtElement_crtInputComp.setAttribute("type", "Other");
+ componentElement.setAttribute("type", "Other");
break;
}
+
// save its name
- crtElement_crtInputComp.setAttribute("name", crtInputHistoryComp.getName());
+ componentElement.setAttribute("name", inputHistoryComponents.getName());
// save the current DOM element in the XML structure
- crtElement_actionInputComp.appendChild(crtElement_crtInputComp);
+ actionElementInputComp.appendChild(componentElement);
}
}
// action output components
- if (!crtHistoryItem.getOutputHistoryComponents().isEmpty()) {
- QDomElement crtElement_actionOutputComp = doc->createElement("camitk:outputs");
- crtElement_action.appendChild(crtElement_actionOutputComp);
+ if (!historyItem.getOutputHistoryComponents().isEmpty()) {
+ QDomElement outputsElement = doc->createElement("camitk:outputs");
+ actionElement.appendChild(outputsElement);
- for(int j=0; j<crtHistoryItem.getOutputHistoryComponents().size(); j++) {
- QDomElement crtElement_crtOuputComp = doc->createElement("camitk:component");
+ for (int j = 0; j < historyItem.getOutputHistoryComponents().size(); j++) {
+ QDomElement componentElement = doc->createElement("camitk:component");
// determine the type of each input component (image, meshes or other)
- HistoryComponent crtOutputHistoryComp = crtHistoryItem.getOutputHistoryComponents().at(j);
- allCreatedComponents.append(crtOutputHistoryComp); // note the component created
- switch(crtOutputHistoryComp.getType()) {
+ HistoryComponent outputHistoryComponents = historyItem.getOutputHistoryComponents().at(j);
+ allCreatedComponents.append(outputHistoryComponents); // note the component created
+
+ switch (outputHistoryComponents.getType()) {
case HistoryComponent::IMAGE_COMPONENT:
- crtElement_crtOuputComp.setAttribute("type", "ImageComponent");
+ componentElement.setAttribute("type", "ImageComponent");
break;
+
case HistoryComponent::MESH_COMPONENT:
- crtElement_crtOuputComp.setAttribute("type", "MeshComponent");
+ componentElement.setAttribute("type", "MeshComponent");
break;
+
case HistoryComponent::OTHER:
default:
- crtElement_crtOuputComp.setAttribute("type", "Other");
+ componentElement.setAttribute("type", "Other");
break;
}
+
// save its name
- crtElement_crtOuputComp.setAttribute("name", crtOutputHistoryComp.getName());
+ componentElement.setAttribute("name", outputHistoryComponents.getName());
// save the current DOM element in the XML structure
- crtElement_actionOutputComp.appendChild(crtElement_crtOuputComp);
+ outputsElement.appendChild(componentElement);
}
}
// Transitions
- if (Application::getHistory().size() >= 1) { // else, no transition at all
+ if (Application::getHistory().size() >= 1) { // else, no transition at all
// Next transition
- QDomElement crtElement_transitionNext = doc->createElement("transition");
- if (i == Application::getHistory().size() - 1) // Last action element => next element = Bye element.
- crtElement_transitionNext.setAttribute("target", "Bye");
- else // Next generic action state
- crtElement_transitionNext.setAttribute("target", "Action " + QString::number(i+2));
- crtElement_transitionNext.setAttribute("event", "Next");
- crtElement_state.appendChild(crtElement_transitionNext);
+ QDomElement nextTransitionElement = doc->createElement("transition");
+
+ if (i == Application::getHistory().size() - 1) { // Last action element => next element = Bye element.
+ nextTransitionElement.setAttribute("target", "Bye");
+ } else { // Next generic action state
+ nextTransitionElement.setAttribute("target", "Action " + QString::number(i + 2));
+ }
+
+ nextTransitionElement.setAttribute("event", "Next");
+ stateElement.appendChild(nextTransitionElement);
// Back transition
- QDomElement crtElement_transitionBack = doc->createElement("transition");
- crtElement_transitionBack.setAttribute("event", "Back");
- if (i == 0) // Back to Initialize state
- crtElement_transitionBack.setAttribute("target", "Initialize");
- else { // Back to previous state and delete optional created component in memory
- crtElement_transitionBack.setAttribute("target", "Action " + QString::number(i));
+ QDomElement backTransitionElement = doc->createElement("transition");
+ backTransitionElement.setAttribute("event", "Back");
+
+ if (i == 0) { // Back to Initialize state
+ backTransitionElement.setAttribute("target", "Initialize");
+ } else { // Back to previous state and delete optional created component in memory
+ backTransitionElement.setAttribute("target", "Action " + QString::number(i));
// Verify that previsous element has not created components in memory
- HistoryItem previousItem = Application::getHistory().at(i-1);
+ HistoryItem previousItem = Application::getHistory().at(i - 1);
+
if (!previousItem.getOutputHistoryComponents().isEmpty()) {
// Ask for deletion of each component created at the previous element
- QDomElement crtElementTransitionBack_onTransition = doc->createElement("onTransition");
- crtElement_transitionBack.appendChild(crtElementTransitionBack_onTransition);
- QDomElement crtElementTransitionBack_close = doc->createElement("camitk:close");
- crtElementTransitionBack_onTransition.appendChild(crtElementTransitionBack_close);
- foreach(HistoryComponent crtComp, previousItem.getOutputHistoryComponents()) {
- QDomElement crtElementTransitionBack_comp = doc->createElement("camitk:component");
- crtElementTransitionBack_close.appendChild(crtElementTransitionBack_comp);
- switch (crtComp.getType()) {
+ QDomElement onTransitionElement = doc->createElement("onTransition");
+ backTransitionElement.appendChild(onTransitionElement);
+ QDomElement closeElement = doc->createElement("camitk:close");
+ onTransitionElement.appendChild(closeElement);
+
+ foreach (HistoryComponent outputHistoryComponent, previousItem.getOutputHistoryComponents()) {
+ QDomElement backTransitionComponentElement = doc->createElement("camitk:component");
+ closeElement.appendChild(backTransitionComponentElement);
+
+ switch (outputHistoryComponent.getType()) {
case HistoryComponent::IMAGE_COMPONENT:
- crtElementTransitionBack_comp.setAttribute("type", "ImageComponent");
+ backTransitionComponentElement.setAttribute("type", "ImageComponent");
break;
+
case HistoryComponent::MESH_COMPONENT:
- crtElementTransitionBack_comp.setAttribute("type", "MeshComponent");
+ backTransitionComponentElement.setAttribute("type", "MeshComponent");
break;
+
case HistoryComponent::OTHER:
default:
- crtElementTransitionBack_comp.setAttribute("type", "Other");
+ backTransitionComponentElement.setAttribute("type", "Other");
break;
}
- crtElementTransitionBack_comp.setAttribute("name", crtComp.getName());
+
+ backTransitionComponentElement.setAttribute("name", outputHistoryComponent.getName());
}
}
}
- crtElement_state.appendChild(crtElement_transitionBack);
+ stateElement.appendChild(backTransitionElement);
} // End transitions
}
@@ -942,8 +1036,8 @@ void Application::saveHistoryAsSXML() {
// Last element : Bye
QDomElement finalElt = doc->createElement("state");
root.appendChild(finalElt);
- finalElt.setAttribute("id","Bye");
- finalElt.setAttribute("final","true");
+ finalElt.setAttribute("id", "Bye");
+ finalElt.setAttribute("final", "true");
QDomElement finalElt_onEntry = doc->createElement("onentry");
finalElt.appendChild(finalElt_onEntry);
QDomElement finalElt_onState = doc->createElement("camitk:onState");
@@ -958,30 +1052,37 @@ void Application::saveHistoryAsSXML() {
finalElt_transition.setAttribute("event", "Back to the beginning");
finalElt_transition.setAttribute("target", "Initialize");
finalElt.appendChild(finalElt_transition);
+
// Ask for deletion of all components created in the pipeline
if (!allCreatedComponents.isEmpty()) {
QDomElement finalEltTransition_onTransition = doc->createElement("onTransition");
finalElt_transition.appendChild(finalEltTransition_onTransition);
QDomElement finalEltTransition_close = doc->createElement("camitk:close");
finalEltTransition_onTransition.appendChild(finalEltTransition_close);
- foreach(HistoryComponent crtComp, allCreatedComponents) {
+
+ foreach (HistoryComponent createdComponent, allCreatedComponents) {
QDomElement finalEltTransition_comp = doc->createElement("camitk:component");
finalEltTransition_close.appendChild(finalEltTransition_comp);
- switch (crtComp.getType()) {
+
+ switch (createdComponent.getType()) {
case HistoryComponent::IMAGE_COMPONENT:
finalEltTransition_comp.setAttribute("type", "ImageComponent");
break;
+
case HistoryComponent::MESH_COMPONENT:
finalEltTransition_comp.setAttribute("type", "MeshComponent");
break;
+
case HistoryComponent::OTHER:
default:
finalEltTransition_comp.setAttribute("type", "Other");
break;
}
- finalEltTransition_comp.setAttribute("name", crtComp.getName());
+
+ finalEltTransition_comp.setAttribute("name", createdComponent.getName());
}
}
+
// note, final element will automatically have a "Quit" transition, added by the action state machine.
@@ -991,12 +1092,14 @@ void Application::saveHistoryAsSXML() {
// Write the xml to a file
QString outputFileName = QFileDialog::getSaveFileName(NULL, tr("Save history of actions ..."), Core::getCurrentWorkingDir() + "/actions_history.xml", tr("XML Files (*.xml)"));
- QFile *outputFile = new QFile(outputFileName);
- if(outputFile->open(QFile::WriteOnly)) {
+ QFile * outputFile = new QFile(outputFileName);
+
+ if (outputFile->open(QFile::WriteOnly)) {
QTextStream out(outputFile);
out << xml;
- } else
+ } else {
cerr << "Error opening file: " + outputFileName.toStdString() + " for writing.";
+ }
}
@@ -1022,15 +1125,54 @@ void Application::initResources() {
// Load the application translation
translator = new QTranslator();
- QString languageFile = ":/translate_" + getName().remove("camitk-") +"/translate/translate_" + selectedLanguage + ".qm";
+ QString languageFile = ":/translate_" + getName().remove("camitk-") + "/translate/translate_" + selectedLanguage + ".qm";
+
if (!translator->load(languageFile))
CAMITK_WARNING("Application", "initResources", "Cannot load file: " + languageFile.toStdString())
- else
+ else {
QCoreApplication::installTranslator(translator);
+ }
}
+// -------------------- createProperties --------------------
+void Application::createProperties() {
+ // instanciate the application property object
+ propertyObject = new PropertyObject(getName());
+
+ // Target positionning method
+ defaultTargetedComponentProperty = new Property("Default target positionning method", camitk::Application::SAME_TRANSFORMATION, "When an action creates a new component, what should be its frame regarding its parent's one.","");
+ defaultTargetedComponentProperty->setEnumTypeName("TargetPositionningMethods");
+ QStringList targetPositionningMethodPropertyGUINames;
+ targetPositionningMethodPropertyGUINames << "Same transformation" << "No transformation" << "Subframe";
+ defaultTargetedComponentProperty->setAttribute("enumNames", targetPositionningMethodPropertyGUINames);
+ propertyObject->addProperty(defaultTargetedComponentProperty);
+
+ // Auto load last opened components
+ autoloadLastOpenedComponentsProperty = new Property("Auto load last opened components?", false,
+ "Do you want to open the last opened components when starting the application?", "");
+ propertyObject->addProperty(autoloadLastOpenedComponentsProperty);
+
+}
+
+// -------------------- setDefaultTargetPositionningMethod --------------------
+void Application::setDefaultTargetPositionningMethod(TargetPositionningMethods method) {
+ dynamic_cast<Application*>(qApp)->getPropertyObject()->setProperty("Default target positionning method", method);
+}
+
+// -------------------- getDefaultTargetPositionningMethod --------------------
+Application::TargetPositionningMethods Application::getDefaultTargetPositionningMethod() {
+ return (TargetPositionningMethods) dynamic_cast<Application*>(qApp)->getPropertyObject()->property("Default target positionning method").toInt();
}
+// ---------------------- getPropertyObject ------------------
+PropertyObject* Application::getPropertyObject() {
+ return propertyObject;
+}
+
+}
+
+
+
diff --git a/sdk/libraries/core/application/Application.h b/sdk/libraries/core/application/Application.h
index 903ffd3..39d60e4 100644
--- a/sdk/libraries/core/application/Application.h
+++ b/sdk/libraries/core/application/Application.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -45,6 +45,8 @@ class ActionExtension;
class Action;
class HistoryItem;
class ComponentExtension;
+class Property;
+class PropertyObject;
/**
* @ingroup group_sdk_libraries_core_application
@@ -62,6 +64,15 @@ class CAMITK_API Application : public QApplication {
public:
+ enum TargetPositionningMethods {
+ SAME_TRANSFORMATION, // Child has the same frame as its parent (parent frame = world).
+ NO_TRANSFORMATION, // Child has no frame and parent frame = world.
+ SUBFRAME // Child has no frame but its parent is set as its parent frame.
+ };
+
+ Q_ENUMS(TargetPositionningMethods)
+
+
/**
* Initializes the window system and constructs a CamiTK application object with argc command line arguments in argv.
* The first parameter is the name of the application (used as a identifier in the settings, for example)
@@ -234,6 +245,11 @@ public:
* @return the number of actions effectively registered (in case an action's name is already registered it won't be a second time)
*/
static int registerAllActions(ActionExtension *);
+
+ /** unregister all actions from the given ActionExtension
+ * @return the number of actions effectively unregistered
+ */
+ static int unregisterAllActions(ActionExtension *);
///@}
/** @name Main Window management
@@ -317,16 +333,47 @@ public:
/// @name Application resources management
///@{
-
-
/**
* Returns for the current CamiTK application, the selected language (stored in its .ini configuration file)
*/
static QString getSelectedLanguage();
///@}
+ /// @name Property management
+ ///@{
+ /**
+ * Get the property object of the application.
+ */
+ PropertyObject* getPropertyObject();
+
+ /**
+ * Get the CamiTK property associated with auto loading last opened component when the application starts.
+ */
+ Property* getAutoloadLastOpenedComponentsProperty() {
+ return autoloadLastOpenedComponentsProperty;
+ }
+
+ /**
+ * Get the CamiTK property associated with the new component frame policy.
+ */
+ Property* getDefaultTargetedComponentProperty() {
+ return defaultTargetedComponentProperty;
+ }
+ ///}@
+ /// @name Frame management
+ ///@{
+ /**
+ * @brief Get the default target positionning method.
+ */
+ static TargetPositionningMethods getDefaultTargetPositionningMethod();
+
+ /**
+ * @brief Set the default target positionning method.
+ */
+ static void setDefaultTargetPositionningMethod(TargetPositionningMethods method);
+ ///@}
private slots:
void quitting();
@@ -358,8 +405,8 @@ private:
/// max number of recent document (default 10)
static int maxRecentDocuments;
- /// Provide internationalization support for text output.
- QTranslator* translator;
+ /// Provide internationalization support for text output.
+ QTranslator* translator;
///@}
/// @name Components management
@@ -457,9 +504,42 @@ private:
/// Init the application resources by loading the language associated .qm file
void initResources();
+ /// @name Property management
+ ///@{
+ /**
+ * Create all the application properties and add them to the qApp
+ */
+ void createProperties();
+
+ /**
+ * The CamiTK property for selecting the frame policy.
+ */
+ Property *defaultTargetedComponentProperty;
+
+ /**
+ * The CamiTK property to open the last components the application opened during its last session.
+ */
+ Property *autoloadLastOpenedComponentsProperty;
+
+ /**
+ * A simple QObject that holds the CamiTK level properties of the application.
+ *
+ * @note
+ * Use the accessor getPropertyObject() to access this object
+ *
+ * @see
+ * PropertyObject
+ */
+ PropertyObject* propertyObject;
+ ///@}
+
};
+
+
}
+Q_DECLARE_METATYPE(camitk::Application::TargetPositionningMethods)
+
#endif // CAMITKAPPLICATION_H
diff --git a/sdk/libraries/core/application/MainWindow.cpp b/sdk/libraries/core/application/MainWindow.cpp
index 9f03b58..c0bb85d 100644
--- a/sdk/libraries/core/application/MainWindow.cpp
+++ b/sdk/libraries/core/application/MainWindow.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -50,6 +50,7 @@
#include <QSettings>
#include <QUrl>
#include <QCloseEvent>
+#include <QMimeData>
namespace camitk {
@@ -62,6 +63,7 @@ MainWindow::MainWindow(QString title) {
setWindowIcon(QIcon(":/camiTKIcon"));
// prepare GUI
+ centralViewer = NULL;
showStatusBar(false);
// add the permanent progress bar
myProgressBar = new QProgressBar();
@@ -115,6 +117,24 @@ bool MainWindow::addViewer ( Viewer* theViewer ) {
return false;
}
+// ------------- removeViewer -----------------
+bool MainWindow::removeViewer(Viewer *viewer) {
+ if (!viewers.contains(viewer))
+ return false;
+
+ // tell all component not to be visible anymore in this viewer
+ foreach(Component* comp, Application::getAllComponents()) {
+ comp->setVisibility(viewer, false);
+ }
+
+ // remove it properly
+ disconnect(viewer, SIGNAL (selectionChanged()), this, SLOT(refresh()));
+ viewers.removeAll(viewer);
+ delete viewer;
+
+ return true;
+}
+
// ------------- showViewer -----------------
void MainWindow::showViewer(Viewer* theViewer, bool visible) {
if (viewers.contains(theViewer)) {
@@ -154,11 +174,20 @@ void MainWindow::addDockViewer ( Qt::DockWidgetArea dockingArea, Viewer* theView
// ------------- setCentralViewer -----------------
void MainWindow::setCentralViewer ( Viewer* theViewer ) {
if ( theViewer->getWidget ( this ) && addViewer ( theViewer ) ) {
+ // remove actual central viewer properly
+ if (centralViewer && (theViewer != centralViewer))
+ removeViewer(centralViewer);
+
// set the central widget
setCentralWidget ( theViewer->getWidget ( this ) );
+ centralViewer = theViewer;
}
}
+// ------------- getCentralViewer -----------------
+const Viewer & MainWindow::getCentralViewer() const {
+ return *centralViewer;
+}
// ------------- refresh -----------------
void MainWindow::refresh() {
diff --git a/sdk/libraries/core/application/MainWindow.h b/sdk/libraries/core/application/MainWindow.h
index ade169e..3ef1049 100644
--- a/sdk/libraries/core/application/MainWindow.h
+++ b/sdk/libraries/core/application/MainWindow.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -111,11 +111,7 @@ public:
/// @name Viewers
///@{
- /** add a viewer (called by addDockViewer and setCentralViewer), returns true if not already added.
- * Note that MainWindow takes ownership of the Viewer pointer and deletes it at the appropriate time.
- * This method connects the selectionChanged signal of the viewer to the refresh method.
- */
- virtual bool addViewer(Viewer*);
+
/// set the visibility for the given viewer (if it is in a dock)
virtual void showViewer(Viewer *, bool);
@@ -134,8 +130,27 @@ public:
* This method calls addViewer(...).
*/
virtual void setCentralViewer(Viewer*);
+
+ /**
+ * @Return the actual central viewer.
+ * @return
+ */
+ virtual const Viewer & getCentralViewer() const;
///@}
+ ///@cond
+ /**
+ * TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+ * @deprecated
+ * Add a viewer (called by addDockViewer and setCentralViewer), returns true if not already added.
+ * Note that MainWindow takes ownership of the Viewer pointer and deletes it at the appropriate time.
+ * This method connects the selectionChanged signal of the viewer to the refresh method.
+ * DEPRECATED (CamiTK 4.0) -> should still exist but private
+ */
+ virtual bool addViewer(Viewer*);
+ ///@endcond
+
+
public slots:
/** @name Refresh and show */
@@ -177,6 +192,20 @@ protected:
/// just call open with the dragged uri
void dropEvent(QDropEvent *event);
+ /**
+ * @brief Remove the given viewer from the list of viewer.
+ * @note This tell all Component not to be visible anymore in this viewer instance, remove it from the list of viewers and delete it.
+ * @param viewer The viewer to remove.
+ * @return True if removing succeeded, false otherwise.
+ */
+ bool removeViewer(Viewer* viewer);
+
+ /**
+ * @brief The actual central Viewer.
+ * @note MainWindow, like QMainWindow with its central widget contains an unique central viewer.
+ */
+ Viewer* centralViewer;
+
private:
diff --git a/sdk/libraries/core/application/SettingsDialog.cpp b/sdk/libraries/core/application/SettingsDialog.cpp
index f014c13..ecb574e 100644
--- a/sdk/libraries/core/application/SettingsDialog.cpp
+++ b/sdk/libraries/core/application/SettingsDialog.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -114,6 +114,7 @@ void SettingsDialog::editSettings(QObject *qObj) {
editedObjectMap.insert(qObj->objectName(), qObj);
//-- add the object to the property editor and the objectList
+ objectController->setObject(NULL); // force update
objectController->setObject(qObj);
objectController->adjustSize();
objectController->show();
diff --git a/sdk/libraries/core/application/SettingsDialog.h b/sdk/libraries/core/application/SettingsDialog.h
index 68da35d..e9b75d2 100644
--- a/sdk/libraries/core/application/SettingsDialog.h
+++ b/sdk/libraries/core/application/SettingsDialog.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/Component.cpp b/sdk/libraries/core/component/Component.cpp
index 0ffe894..baa2dd1 100644
--- a/sdk/libraries/core/component/Component.cpp
+++ b/sdk/libraries/core/component/Component.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -63,11 +63,17 @@ Component::Component ( Component *parentComponent, const QString & n, Representa
// -------------------- default destructor --------------------
Component::~Component() {
+ // delete all reference of this component in the application
Application::removeComponent(this);
- // delete all children Component
+ // delete all its children Components
deleteChildren();
+ // unregister if I got a parent component
+ if(Component* parent = getParentComponent()) {
+ parent->removeChild(this);
+ }
+
// erase all the viewers
myViewers.clear();
diff --git a/sdk/libraries/core/component/Component.h b/sdk/libraries/core/component/Component.h
index 400f387..e6a887f 100644
--- a/sdk/libraries/core/component/Component.h
+++ b/sdk/libraries/core/component/Component.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -333,7 +333,13 @@ public:
*/
Component(Component *parentComponent, const QString & name, Representation rep = NO_REPRESENTATION) throw(AbortException);
- /// default destructor
+ /** default destructor.
+ * The Component class destructor is automatically called after the inherited destructor has finished (C++ standard).
+ * This destructor delete all the children, clear all this component's viewer list, delete all helper class instance
+ * (Geometry, Slice or Frame), which in turns will delete the VTK pipeline and any additional prop,
+ * and finally delete and all additional CamiTK Properties.
+ * @see deleteChildren()
+ */
virtual ~Component();
/** return the type of representation concretely implemented by this Component in the InteractiveViewer.
@@ -510,7 +516,6 @@ public:
* version). You are encourage to build Action not getPopupMenu() anymore.
*/
QMenu * getActionAndPopupMenu();
- ///@}
///@endcond
/** Get a Property given its name
@@ -530,6 +535,7 @@ public:
* @return false if the Qt Meta Object property was added by this method (otherwise the property was already defined and true is returned if it was successfully updated)
*/
virtual bool addProperty(Property*);
+ ///@}
/**
* @name InterfaceNode
@@ -808,10 +814,16 @@ public:
delegate3(myFrame, rotate, double, double, double)
+ delegate3(myFrame, rotateVTK, double, double, double)
+
delegate3(myFrame, setTransformTranslation, double, double, double)
+ delegate3(myFrame, setTransformTranslationVTK, double, double, double)
+
delegate3(myFrame, setTransformRotation, double, double, double)
+ delegate3(myFrame, setTransformRotationVTK, double, double, double)
+
vtkSmartPointer<vtkAxesActor> getFrameAxisActor() {
if(!myFrame)
CAMITK_ERROR("Component", "getFrameAxisActor", "Delegate myFrame is not instanciated.")
@@ -935,7 +947,7 @@ inline InterfaceFrame * Component::getFrame() {
// -------------------- getPixmap ------------------
inline QPixmap Component::getIcon() {
- return NULL;
+ return QPixmap(0, 0); // this is a NULL QPixmap in the Qt sense. QPixmap::isNull will then return true;
}
// -------------------- inItalic --------------------
diff --git a/sdk/libraries/core/component/ComponentExtension.cpp b/sdk/libraries/core/component/ComponentExtension.cpp
index aa21ad8..0373491 100644
--- a/sdk/libraries/core/component/ComponentExtension.cpp
+++ b/sdk/libraries/core/component/ComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,7 @@
// -- QT stuff
#include <QDir>
#include <QtGui>
+#include <QMessageBox>
namespace camitk {
diff --git a/sdk/libraries/core/component/ComponentExtension.h b/sdk/libraries/core/component/ComponentExtension.h
index fd5c85f..d922bdd 100644
--- a/sdk/libraries/core/component/ComponentExtension.h
+++ b/sdk/libraries/core/component/ComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/ComponentPopupMenu.cpp b/sdk/libraries/core/component/ComponentPopupMenu.cpp
index 650807a..b7f3363 100644
--- a/sdk/libraries/core/component/ComponentPopupMenu.cpp
+++ b/sdk/libraries/core/component/ComponentPopupMenu.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/ComponentPopupMenu.h b/sdk/libraries/core/component/ComponentPopupMenu.h
index fb4b201..32adbdc 100644
--- a/sdk/libraries/core/component/ComponentPopupMenu.h
+++ b/sdk/libraries/core/component/ComponentPopupMenu.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/Frame.cpp b/sdk/libraries/core/component/Frame.cpp
index 58ea934..b49c6cb 100644
--- a/sdk/libraries/core/component/Frame.cpp
+++ b/sdk/libraries/core/component/Frame.cpp
@@ -120,8 +120,6 @@ const QVector<InterfaceFrame *> & Frame::getChildrenFrame() const {
return childrenFrame;
}
-
-
// ------------------- setParentFrame ----------------------------------
void Frame::setParentFrame(InterfaceFrame *parent, bool keepTransform) {
InterfaceFrame * checkedParent = parent;
@@ -205,7 +203,7 @@ const vtkSmartPointer<vtkTransform> Frame::getTransformFromFrame(InterfaceFrame
vtkSmartPointer<vtkMatrix4x4> worldToFrameMatrix;
if (frame == NULL) { // Frame IS the world Frame !
worldToFrameMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
- worldToMeMatrix->Identity();
+ worldToFrameMatrix->Identity();
} else {
worldToFrameMatrix = frame->getTransformFromWorld()->GetMatrix();
}
@@ -258,6 +256,25 @@ void Frame::rotate(double aroundX, double aroundY, double aroundZ) {
transformParentToMe->RotateX(aroundX);
transformParentToMe->RotateY(aroundY);
transformParentToMe->RotateZ(aroundZ);
+ transformParentToMe->Update();
+
+ transformParentToMe->Translate(initialPos[0], initialPos[1], initialPos[2]);
+
+ transformParentToMe->Update();
+ transformWorldToMe->Update();
+ representationTransformFilter->Update();
+}
+
+// ------------------- rotateVTK ----------------------------------
+void Frame::rotateVTK(double aroundX, double aroundY, double aroundZ) {
+ double * initialPos = transformParentToMe->GetPosition();
+
+ transformParentToMe->Translate(-initialPos[0], -initialPos[1], -initialPos[2]);
+
+ transformParentToMe->RotateZ(aroundZ);
+ transformParentToMe->RotateX(aroundX);
+ transformParentToMe->RotateY(aroundY);
+ transformParentToMe->Update();
transformParentToMe->Translate(initialPos[0], initialPos[1], initialPos[2]);
@@ -271,16 +288,33 @@ void Frame::setTransformTranslation(double x, double y, double z) {
double * initialRotation = transformParentToMe->GetOrientation();
transformParentToMe->Identity();
- transformParentToMe->Translate(x, y, z);
transformParentToMe->RotateX(initialRotation[0]);
transformParentToMe->RotateY(initialRotation[1]);
transformParentToMe->RotateZ(initialRotation[2]);
+ transformParentToMe->Update();
+ transformParentToMe->Translate(x, y, z);
transformParentToMe->Update();
transformWorldToMe->Update();
representationTransformFilter->Update();
}
+// ------------------- setTransformTranslationVTK --------------------------
+void Frame::setTransformTranslationVTK(double x, double y, double z) {
+ double * initialRotation = transformParentToMe->GetOrientation();
+
+ transformParentToMe->Identity();
+ // VTK rotation order is Z, X, Y
+ transformParentToMe->RotateZ(initialRotation[2]);
+ transformParentToMe->RotateX(initialRotation[0]);
+ transformParentToMe->RotateY(initialRotation[1]);
+ transformParentToMe->Update();
+ transformParentToMe->Translate(x, y, z);
+ transformParentToMe->Update();
+ transformWorldToMe->Update();
+ representationTransformFilter->Update();
+}
+
// ------------------- setTransformRotation ------------------------------
void Frame::setTransformRotation(double aroundX, double aroundY, double aroundZ) {
double * initialTranslation = transformParentToMe->GetPosition();
@@ -289,6 +323,7 @@ void Frame::setTransformRotation(double aroundX, double aroundY, double aroundZ)
transformParentToMe->RotateX(aroundX);
transformParentToMe->RotateY(aroundY);
transformParentToMe->RotateZ(aroundZ);
+ transformParentToMe->Update();
transformParentToMe->Translate(initialTranslation[0], initialTranslation[1], initialTranslation[2]);
transformParentToMe->Update();
@@ -296,6 +331,22 @@ void Frame::setTransformRotation(double aroundX, double aroundY, double aroundZ)
representationTransformFilter->Update();
}
+// ------------------- setTransformRotationVTK ------------------------------
+void Frame::setTransformRotationVTK(double aroundX, double aroundY, double aroundZ) {
+ double * initialTranslation = transformParentToMe->GetPosition();
+
+ transformParentToMe->Identity();
+ // VTK rotation order is Z, X, Y
+ transformParentToMe->RotateZ(aroundZ);
+ transformParentToMe->RotateX(aroundX);
+ transformParentToMe->RotateY(aroundY);
+ transformParentToMe->Update();
+ transformParentToMe->Translate(initialTranslation[0], initialTranslation[1], initialTranslation[2]);
+ transformParentToMe->Update();
+ transformWorldToMe->Update();
+ representationTransformFilter->Update();
+}
+
// ------------------- getFrameActor ----------------------------------
diff --git a/sdk/libraries/core/component/Frame.h b/sdk/libraries/core/component/Frame.h
index b8895cb..7fc2437 100644
--- a/sdk/libraries/core/component/Frame.h
+++ b/sdk/libraries/core/component/Frame.h
@@ -76,7 +76,6 @@ public:
virtual const QVector<InterfaceFrame *> & getChildrenFrame() const;
/** @} */
-
/**
* Transforms accessors / Modifyers
* @{
@@ -102,18 +101,25 @@ public:
*/
virtual void resetTransform();
-
/**
* Apply a translation relative to the current position
*/
virtual void translate(double x, double y, double z);
/**
- * Apply a rotation relative to the current position
+ * Apply rotations relative to the current position in the alphabetical order (X, Y, Z).
+ * @note Prefer using the rotateVTK method if possible, this one involves errors when retrieving rotation angles
+ * from a rotation matrix, as we use a VTK method for this.
*/
virtual void rotate(double aroundX, double aroundY, double aroundZ);
/**
+ * Apply a rotation relative to the current position, using the VTK rotation order (Z, X, Y)
+ * @note Prefer using this method if you can.
+ */
+ virtual void rotateVTK(double aroundX, double aroundY, double aroundZ);
+
+ /**
* Set the translation part of the 3D space transformation of the current frame.
* @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
*
@@ -121,12 +127,28 @@ public:
virtual void setTransformTranslation(double x, double y, double z);
/**
+ * Set the translation part of the 3D space transformation of the current frame.
+ * This translation uses the VTK rotation order (Z, X, Y) system.
+ * @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
+ *
+ */
+ virtual void setTransformTranslationVTK(double x, double y, double z);
+
+ /**
* Set the rotation part of the 3D space transformation of the current frame.
* @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
*
*/
virtual void setTransformRotation(double aroundX, double aroundY, double aroundZ);
+ /**
+ * Set the rotation part of the 3D space transformation of the current frame.
+ * This translation uses the VTK rotation order (Z, X, Y) system.
+ * @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
+ *
+ */
+ virtual void setTransformRotationVTK(double aroundX, double aroundY, double aroundZ);
+
/** @} */
/**
@@ -144,8 +166,6 @@ public:
*/
virtual bool getFrameVisibility(Viewer * viewer) const;
-
-
/**
* If the parent frame keeps track of its children, when a child is deleted
* it should warn its parent
diff --git a/sdk/libraries/core/component/GeometricObject.cpp b/sdk/libraries/core/component/GeometricObject.cpp
index ca700e1..c8546cf 100644
--- a/sdk/libraries/core/component/GeometricObject.cpp
+++ b/sdk/libraries/core/component/GeometricObject.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/GeometricObject.h b/sdk/libraries/core/component/GeometricObject.h
index fc76c74..5128194 100644
--- a/sdk/libraries/core/component/GeometricObject.h
+++ b/sdk/libraries/core/component/GeometricObject.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/Geometry.cpp b/sdk/libraries/core/component/Geometry.cpp
index cbf206b..5f28d60 100644
--- a/sdk/libraries/core/component/Geometry.cpp
+++ b/sdk/libraries/core/component/Geometry.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -103,12 +103,12 @@ Geometry::Geometry(QString label, vtkSmartPointer<vtkPointSet> pointSetPtr, cons
pointsColor[1] = 0.0;
pointsColor[2] = 1.0;
pointsColor[3] = 1.0;
-
+
alphaShaded = 0.2;
//-- init generic filter and dataOutput and customPipelineOuput
concreteData = vtkSmartPointer<vtkCastToConcrete>::New();
- concreteData->SetInput(this->pointSet);
+ concreteData->SetInputData(this->pointSet);
worldTransformFilter = vtkSmartPointer<vtkTransformFilter>::New();
vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
@@ -116,7 +116,6 @@ Geometry::Geometry(QString label, vtkSmartPointer<vtkPointSet> pointSetPtr, cons
worldTransformFilter->SetTransform(transform);
worldTransformFilter->SetInputConnection(concreteData->GetOutputPort());
-// dataOutput = concreteData->GetOutputPort();
dataOutput = worldTransformFilter->GetOutputPort();
customPipelineOutput = dataOutput;
@@ -179,8 +178,6 @@ void Geometry::setPointSet(vtkSmartPointer<vtkPointSet> ps) {
void Geometry::setMeshWorldTransform(vtkSmartPointer<vtkTransform> transform) {
// Do not delete vtkSmartTransform previous transform, but set it to NULL to
// decrement its counter
-// worldTransformFilter->GetTransform()->Delete();
-
worldTransformFilter->SetTransform(transform);
worldTransformFilter->Update();
}
@@ -428,7 +425,6 @@ bool Geometry::removeProp(const QString& name) {
void Geometry::setPointPosition(const unsigned int orderNumber, const double x, const double y, const double z) {
pointSet->GetPoints()->SetPoint(orderNumber, x, y, z);
pointSet->Modified();
- pointSet->Update();
}
//------------------------------- setActorColor ----------------------------------------
@@ -714,7 +710,6 @@ void Geometry::setPointData(vtkSmartPointer<vtkDataArray> da) {
}
// make sure the change is taking into account
pointSet->Modified();
- pointSet->Update();
mapper->Update();
}
diff --git a/sdk/libraries/core/component/Geometry.h b/sdk/libraries/core/component/Geometry.h
index ce50986..3bbaab9 100644
--- a/sdk/libraries/core/component/Geometry.h
+++ b/sdk/libraries/core/component/Geometry.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -86,18 +86,18 @@ namespace camitk {
* The complete Vtk Pipeline looks like this:
*
* \verbatim
- * +-----> getDataPort()
- * +----------------+ +------------------+ +-------------------+ /
+ * +-----> getDataPort()
+ * +----------------+ +------------------+ +---------------------------+ /
* | vtkPointSet | |vtkCastToConcrete | |vtkTransformPolyDataFilter |/
- * | |----\| |----\ | |----\ your custom ----\ ...
- * | pointSet |----/| concreteData |----/ |data in world frame|----/ pipeline ----/
- * +----------------+ +------------------+ +-------------------+|
+ * | |----\| |----\ | |----\ your custom ----\ ...
+ * | pointSet |----/| concreteData |----/ | data in world frame |----/ pipeline ----/
+ * +----------------+ +------------------+ +--------------------------+|
* ^ | |
* | | |
* setPointSet() | |
* | |
* v v
- * getPointSet() getPointSetWolrdCoords()
+ * getPointSet() getPointSetWorldCoords()
*
*
* setDataConnection(..)
diff --git a/sdk/libraries/core/component/InterfaceBitMap.h b/sdk/libraries/core/component/InterfaceBitMap.h
index 71baec6..8dc2a34 100644
--- a/sdk/libraries/core/component/InterfaceBitMap.h
+++ b/sdk/libraries/core/component/InterfaceBitMap.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/InterfaceFrame.h b/sdk/libraries/core/component/InterfaceFrame.h
index 4ada81c..061d800 100644
--- a/sdk/libraries/core/component/InterfaceFrame.h
+++ b/sdk/libraries/core/component/InterfaceFrame.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -129,24 +129,59 @@ public:
virtual void translate(double x, double y, double z) = 0;
/**
- * Apply a rotation relative to the current position
+ * Apply rotations relative to the current position in the alphabetical order (X, Y, Z).
+ * @note Prefer using the rotateVTK method if possible, this one involves errors when retrieving rotation angles
+ * from a rotation matrix, as we use a VTK method for this.
*/
virtual void rotate(double aroundX, double aroundY, double aroundZ) = 0;
/**
+ * Apply a rotation relative to the current position, using the VTK rotation order (Z, X, Y)
+ * @note Prefer using this method if you can.
+ */
+ virtual void rotateVTK(double aroundX, double aroundY, double aroundZ) = 0;
+
+ /**
* Set the translation part of the 3D space transformation of the current frame.
* @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
+ * @note This method differs from setTransformTranslationVTK on the rotation order in the transform matrix
+ * Here order is alphabetical X, Y, Z, which involves problems when retrieving angles from the rotation matrix
+ * as this is done using VTK.
+ * If you can, prefer using setTransformTranslationVTK.
*
*/
virtual void setTransformTranslation(double x, double y, double z) = 0;
/**
+ * Set the translation part of the 3D space transformation of the current frame.
+ * This method uses the VTK rotation order (Z, X, Y).
+ * @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
+ * @note This method differs from setTransformTranslation on the rotation order in the transform matrix
+ * Here order is the one used by VTK: Z, X, Y which guarantees that you can retrieve the correct angles from a rotation matrix.
+ * Prefer using this method than setTransformTranslation.
+ */
+ virtual void setTransformTranslationVTK(double x, double y, double z) = 0;
+
+ /**
* Set the rotation part of the 3D space transformation of the current frame.
* @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
- *
+ * @note This method differs from setTransformRotationVTK on the rotation order in the transform matrix
+ * Here order is alphabetical X, Y, Z, which involves problems when retrieving angles from the rotation matrix
+ * as this is done using VTK.
+ * If you can, prefer using setTransformRotationVTK.
*/
virtual void setTransformRotation(double aroundX, double aroundY, double aroundZ) = 0;
+ /**
+ * Set the rotation part of the 3D space transformation of the current frame.
+ * @note Reminder: A 3D space transform is a 4x4 matrix, composed of a rotation and a translation.
+ * @note This method differs from setTransformRotation on the rotation order in the transform matrix
+ * Here order is the one used by VTK: Z, X, Y which guarantees that you can retrieve the correct angles from a rotation matrix.
+ * Prefer using this method than setTransformRotation.
+ *
+ */
+ virtual void setTransformRotationVTK(double aroundX, double aroundY, double aroundZ) = 0;
+
/** @} */
/**
diff --git a/sdk/libraries/core/component/InterfaceGeometry.h b/sdk/libraries/core/component/InterfaceGeometry.h
index ecf46c3..7f81869 100644
--- a/sdk/libraries/core/component/InterfaceGeometry.h
+++ b/sdk/libraries/core/component/InterfaceGeometry.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/InterfaceNode.h b/sdk/libraries/core/component/InterfaceNode.h
index 4d43cb9..d7143f4 100644
--- a/sdk/libraries/core/component/InterfaceNode.h
+++ b/sdk/libraries/core/component/InterfaceNode.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,7 @@
// -- QT stuff classes
class QPixmap;
class QMenu;
+class QWidget;
namespace camitk {
@@ -57,7 +58,7 @@ namespace camitk {
class InterfaceNode {
public:
/// empty virtual destructor, to avoid memory leak
- virtual ~InterfaceNode() {};
+ virtual ~InterfaceNode() {}
/// get the name to be displayed
virtual QString getName() const = 0;
diff --git a/sdk/libraries/core/component/InterfaceProperty.h b/sdk/libraries/core/component/InterfaceProperty.h
index ad2fb9e..ea66bd3 100644
--- a/sdk/libraries/core/component/InterfaceProperty.h
+++ b/sdk/libraries/core/component/InterfaceProperty.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/Slice.cpp b/sdk/libraries/core/component/Slice.cpp
index 82b81ca..4b9c811 100644
--- a/sdk/libraries/core/component/Slice.cpp
+++ b/sdk/libraries/core/component/Slice.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,12 +40,14 @@
#include <vtkTextActor.h>
#include <vtkProperty2D.h>
#include <vtkImageFlip.h>
+#include <vtkImageMapper3D.h>
using namespace std;
namespace camitk {
/* Deprecated constructor */
+// -------------------- Deprecated constructor --------------------
Slice::Slice(vtkSmartPointer<vtkImageData> volume, PossibleOrientation orientation, vtkSmartPointer<vtkWindowLevelLookupTable> lookupTable) {
switch (orientation) {
default:
@@ -73,7 +75,7 @@ Slice::Slice(vtkSmartPointer<vtkImageData> volume, PossibleOrientation orientati
}
-/* Constructor */
+// -------------------- constructor --------------------
Slice::Slice(vtkSmartPointer<vtkImageData> volume, SliceOrientation orientation, vtkSmartPointer<vtkWindowLevelLookupTable> lookupTable) {
this->sliceOrientation = orientation;
this->lut = lookupTable;
@@ -83,9 +85,10 @@ Slice::Slice(vtkSmartPointer<vtkImageData> volume, SliceOrientation orientation,
}
-/* Destructor */
+// -------------------- Destructor --------------------
Slice::~Slice() {
// Let's unreference vtkSmartPointers
+
originalVolume = NULL;
lut = NULL;
imgToMapFilter = NULL;
@@ -98,6 +101,7 @@ Slice::~Slice() {
}
+// -------------------- init --------------------
void Slice::init() {
currentSliceIndex = 0;
@@ -137,6 +141,7 @@ void Slice::init() {
}
+// -------------------- setOriginalVolume --------------------
void Slice::setOriginalVolume( vtkSmartPointer<vtkImageData> volume ) {
// If there were already a referenced volume,
// de-reference the smart pointer.
@@ -166,9 +171,9 @@ void Slice::setOriginalVolume( vtkSmartPointer<vtkImageData> volume ) {
initActors();
}
-
+// -------------------- initActors --------------------
void Slice::initActors() {
- imgToMapFilter->SetInput(originalVolume);
+ imgToMapFilter->SetInputData(originalVolume);
if (NULL==lut) {
imgToMapFilter->SetLookupTable(0);
@@ -176,11 +181,11 @@ void Slice::initActors() {
imgToMapFilter->SetLookupTable(lut);
/* 3D Actor case: directly pluged to the output of imgToMapFilter */
- image3DActor->SetInput(imgToMapFilter->GetOutput());
+ image3DActor->GetMapper()->SetInputConnection(imgToMapFilter->GetOutputPort());
image3DActor->InterpolateOn();
// 2D actors
- image2DActor->SetInput(imgToMapFilter->GetOutput());
+ image2DActor->GetMapper()->SetInputConnection(imgToMapFilter->GetOutputPort());
image2DActor->InterpolateOn();
// Pick plane
@@ -216,50 +221,48 @@ void Slice::initActors() {
}
+// -------------------- setImageWorldTransform --------------------
void Slice::setImageWorldTransform(vtkSmartPointer<vtkTransform> transform) {
// image3DActor->GetUserTransform()->Delete();
image3DActor->SetUserTransform(transform);
}
-/* Return the vtkImageActor (vtkProp) representing a slice to be displayed in 2D. */
+// -------------------- get2DImageActor --------------------
vtkSmartPointer<vtkImageActor> Slice::get2DImageActor() const {
return image2DActor;
}
-/* Return the vtkImageActor (vtkProp) representing a slice to be displayed in 2D. */
+// -------------------- get3DImageActor --------------------
vtkSmartPointer<vtkImageActor> Slice::get3DImageActor() const {
return image3DActor;
}
-
-/* Return the vtkActor used to pick pixels in the slices. */
+// -------------------- getPickPlaneActor --------------------
vtkSmartPointer<vtkActor> Slice::getPickPlaneActor() const {
return pickPlaneActor;
}
-
-
-/* This method is called when the associated plane has been picked in the InteractiveViewer,
- * the given coordinates is position where the plane was picked.
- */
+// -------------------- pixelPicked --------------------
void Slice::pixelPicked(double x, double y, double z) {
return;
}
-
+// -------------------- reslicedToVolumeCoords --------------------
void Slice::reslicedToVolumeCoords(const double *ijk, double *xyz) {
xyz[0] = ijk[0] * originalSpacing[0];
xyz[1] = ijk[1] * originalSpacing[1];
xyz[2] = ijk[2] * originalSpacing[2];
}
+// -------------------- volumeToReslicedCoords --------------------
void Slice::volumeToReslicedCoords(const double *xyz, double *ijk) {
ijk[0] = xyz[0] / originalSpacing[0];
ijk[1] = xyz[1] / originalSpacing[1];
ijk[2] = xyz[2] / originalSpacing[2];
}
+// -------------------- updatePickPlane --------------------
void Slice::updatePickPlane() {
// Be carefull, The center of the first voxel (0,0,0) is displayed at coordinates (0.0, 0.0, 0.0).
// Pixels winthin borders are represented (in 2D) only by their half, quarter or eigth depending on their coordinates.
@@ -294,7 +297,7 @@ void Slice::updatePickPlane() {
pickPlane->UpdateWholeExtent();
}
-/* Return the number of slices in the image data set. */
+// -------------------- getNumberOfSlices --------------------
int Slice::getNumberOfSlices() const {
int nbSlices = 0;
@@ -315,18 +318,12 @@ int Slice::getNumberOfSlices() const {
return nbSlices;
}
-
-
-
-/* Return the index of the current displayed slice. */
+// -------------------- getSlice --------------------
int Slice::getSlice() const {
return currentSliceIndex;
}
-/* Set the current slice index.
- * If the slice index is less than the first slice index, the first slice is displayed.
- * If the slice index is more than the last slice index, the last slice is displayed.
- * @param s the index of the slice to display (base 0). */
+// -------------------- setSlice --------------------
void Slice::setSlice(int s) {
// Check if s is inside the volume bounds
if ( s < 0 ) {
@@ -379,7 +376,7 @@ void Slice::setSlice(int s) {
}
-// Set the slice corresponding to the given world coordinates
+// -------------------- setSlice --------------------
void Slice::setSlice(double x, double y, double z) {
// At this point, coordinates are expressed in Image coordinate system
@@ -407,21 +404,17 @@ void Slice::setSlice(double x, double y, double z) {
}
}
-
-
-/* Return the number of colors in the images.
- * If color is coded on 1 byte, the images are on 256 grey level.
- * If color is coded on 2 bytes, the images are on 4096 grey level (not 65536). */
+// -------------------- getNumberOfColors --------------------
int Slice::getNumberOfColors() const {
return originalVolume->GetScalarTypeMax() - originalVolume->GetScalarTypeMin();
}
-
-// move the pixel selection green indicator (pixelActor) to the given real position
+// -------------------- setPixelRealPosition --------------------
void Slice::setPixelRealPosition(double x, double y, double z) {
updatePixelActorPosition(x, y, z);
}
+// -------------------- initPixelActor --------------------
void Slice::initPixelActor() {
double xMin = 0.0;
double xMax = originalSize[0];
@@ -440,7 +433,7 @@ void Slice::initPixelActor() {
void Slice::updatePixelActorPosition(double x, double y, double z) {
// if the interactive viewer is not refreshed/displayed, the pixelActor is null. In this case, no point to update it
if (pixelActor) {
- // Create the cloup points used to describe the bounding box around
+ // Create the cloud points used to describe the bounding box around
vtkSmartPointer<vtkPoints> pixelPoints = vtkSmartPointer<vtkPoints>::New();
pixelPoints->SetNumberOfPoints(4);
// Those points describes the (red / blue / green) cross around the picked pixel.
@@ -448,7 +441,7 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
switch (sliceOrientation) {
case AXIAL:
- planeZCoord = z - (originalSpacing[2] / 2);
+ planeZCoord = z - (originalSpacing[2] / 2.0);
// 0 -> Anterior Point
pixelPoints->InsertPoint(0, x, 0.0 , planeZCoord);
// 1 -> Posterior Point
@@ -460,7 +453,7 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
break;
case CORONAL:
- planeYCoord = y - (originalSpacing[1] / 2);
+ planeYCoord = y - (originalSpacing[1] / 2.0);
// 0 -> Superior Point
pixelPoints->InsertPoint(0, x , planeYCoord, originalSize[2]);
// 1 -> Inferior Point
@@ -472,7 +465,7 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
break;
case SAGITTAL:
- planeXCoord = x + (originalSpacing[0]/2);
+ planeXCoord = x + (originalSpacing[0] / 2.0);
// 0 -> Superior Point
pixelPoints->InsertPoint(0, planeXCoord, y, originalSize[2]);
// 1 -> Inferior Point
@@ -509,7 +502,7 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
// Create the corresponding mapper
vtkSmartPointer<vtkDataSetMapper> aPixelMapper = vtkSmartPointer<vtkDataSetMapper>::New();
- aPixelMapper->SetInput(aPixelGrid);
+ aPixelMapper->SetInputData(aPixelGrid);
pixelActor->SetMapper(aPixelMapper);
pixelActor->GetProperty()->SetAmbient(1.0);
@@ -533,7 +526,7 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
}
pixelActor->GetProperty()->SetLineWidth( 1.0 );
- pixelActor->SetPosition( 0.0, 0.0, 0.0 );
+// pixelActor->SetPosition( 0.0, 0.0, 0.0 );
//-- pixelActor can not be picked
pixelActor->PickableOff();
}
@@ -541,14 +534,14 @@ void Slice::updatePixelActorPosition(double x, double y, double z) {
}
-/* Create the pixel grid (bounding box) around the pixel picked.
- * Returns the actors that has been calculated */
+// -------------------- --------------------
vtkSmartPointer<vtkActor> Slice::getPixelActor() {
if (!pixelActor)
initPixelActor();
return pixelActor;
}
+// -------------------- --------------------
void Slice::init2DAxesActor() {
axes2DActor = vtkSmartPointer<vtkAxesActor>::New();
axes2DActor->SetShaftTypeToCylinder();
@@ -589,7 +582,7 @@ void Slice::init2DAxesActor() {
update2DAxesActorPosition();
}
-
+// -------------------- --------------------
void Slice::update2DAxesActorPosition() {
vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
transform->Identity();
@@ -625,6 +618,7 @@ void Slice::update2DAxesActorPosition() {
// else no point to update the pixelActor
}
+// -------------------- --------------------
vtkSmartPointer<vtkAxesActor> Slice::get2DAxesActor() {
if (! axes2DActor)
init2DAxesActor();
diff --git a/sdk/libraries/core/component/Slice.h b/sdk/libraries/core/component/Slice.h
index 7887cd3..eac3d83 100644
--- a/sdk/libraries/core/component/Slice.h
+++ b/sdk/libraries/core/component/Slice.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/ImageComponent.cpp b/sdk/libraries/core/component/image/ImageComponent.cpp
index a47a84e..30e3ce8 100644
--- a/sdk/libraries/core/component/image/ImageComponent.cpp
+++ b/sdk/libraries/core/component/image/ImageComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
-* (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -99,6 +99,8 @@ ImageComponent::~ImageComponent() {
if (selectionView != NULL) {
delete selectionView;
}
+
+ originalImageData = NULL;
}
// -------------------- init --------------------
@@ -119,7 +121,7 @@ void ImageComponent::init() {
lut = vtkSmartPointer<vtkWindowLevelLookupTable>::New();
// Properties
- Property * nameProp = new Property("Image Name", QVariant("None"), tr("Name of the image displaied in the explorer"), "");
+ Property * nameProp = new Property("Image Name", QVariant(getName()), tr("Name of the image displayed in the explorer"), "");
addProperty(nameProp);
Property * imageDims = new Property("Image Dimensions", QVariant("(0, 0, 0)"), tr("Dimensions of the image in each direction (x,y,z)"), "voxel number");
@@ -196,7 +198,6 @@ void ImageComponent::updateImageProperties() {
imageSize += ")";
setProperty("Image Size", QVariant(imageSize));
-
setProperty("Voxel Data Type", QVariant(getDataType()));
setProperty("Display Image in 3D Viewer", QVariant(true));
@@ -207,10 +208,22 @@ void ImageComponent::updateImageProperties() {
// -------------------- updateProperty --------------------
void ImageComponent::updateProperty(QString name, QVariant value) {
- bool viewIn3D = property("Display Image in 3D Viewer").toBool();
- this->setViewIn3D(viewIn3D);
-
- Component::updateProperty(name, value);
+ // update the non-read only properties
+ if (name == "Display Image in 3D Viewer") {
+ this->setViewIn3D(value.toBool());
+ } else if (name == "Image Name") {
+ setName(value.toString());
+ refreshInterfaceNode();
+ }
+ // bypass read-only properties
+ // (other specific properties are read only and should not be sent up to Component::updateProperty)
+ else if (name != "Image Dimensions"
+ && name != "Image Size"
+ && name != "Voxel Size"
+ && name != "Voxel Data Type"
+ && name != "Initial Image Orientation") {
+ Component::updateProperty(name, value);
+ }
}
// -------------------- setImageData --------------------
@@ -222,6 +235,7 @@ void ImageComponent::setImageData(vtkSmartPointer<vtkImageData> anImageData,
this->initialOrientation = initialOrientation;
originalImageData = NULL;
+ vtkSmartPointer<vtkImageData> inputImage = NULL;
if (copy) {
// We need to use a shall because of some strange behaviour of mingw
@@ -231,22 +245,22 @@ void ImageComponent::setImageData(vtkSmartPointer<vtkImageData> anImageData,
// (equivalent of ITK DisconnectPipeline()...)
// Note : this (i.e disconnect/deepcopy/shallowcopy) should not have to be done
// in the components...
- originalImageData = vtkImageData::New();
- originalImageData->ShallowCopy(anImageData);
+ inputImage = vtkSmartPointer<vtkImageData>::New();
+ inputImage->ShallowCopy(anImageData);
} else
- originalImageData = anImageData;
+ inputImage = anImageData;
// 1. Get / compute the initial translation of the image
double t_x, t_y, t_z;
- originalImageData->GetOrigin(t_x, t_y, t_z);
- vtkSmartPointer<vtkTransform> initialTranslation = vtkTransform::New();
+ inputImage->GetOrigin(t_x, t_y, t_z);
+ vtkSmartPointer<vtkTransform> initialTranslation = vtkSmartPointer<vtkTransform>::New();
initialTranslation->Identity();
initialTranslation->Translate(t_x, t_y, t_z);
initialTranslation->Update();
// 2. Get the orientation of the image
- double* imgSpacing = originalImageData->GetSpacing();
- int* imgDims = originalImageData->GetDimensions();
+ double* imgSpacing = inputImage->GetSpacing();
+ int* imgDims = inputImage->GetDimensions();
double dims[3];
dims[0] = imgSpacing[0] * imgDims[0];
dims[1] = imgSpacing[1] * imgDims[1];
@@ -259,30 +273,30 @@ void ImageComponent::setImageData(vtkSmartPointer<vtkImageData> anImageData,
addProperty(orientationProperty);
// 4. Store the Translation * orientation -> RAI = initialImageDataTransform
- initialImageDataTransform = vtkTransform::New();
- vtkSmartPointer<vtkMatrix4x4> initialImageDataMatrix = vtkMatrix4x4::New();
+ initialImageDataTransform = vtkSmartPointer<vtkTransform>::New();
+ vtkSmartPointer<vtkMatrix4x4> initialImageDataMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
vtkMatrix4x4::Multiply4x4(initialTranslation->GetMatrix(), orientationToRAIMatrix, initialImageDataMatrix);
initialImageDataTransform->SetMatrix(initialImageDataMatrix);
// 5. Store the rotation * translation * orientation -> RAI = initialFrameTransform
- initialFrameTransform = vtkTransform::New();
- vtkSmartPointer<vtkMatrix4x4> initialFrameMatrix = vtkMatrix4x4::New();
- if(!initialRotationMatrix){
- initialRotationMatrix = vtkMatrix4x4::New();
- initialRotationMatrix->Identity();
- }
+ initialFrameTransform = vtkSmartPointer<vtkTransform>::New();
+ vtkSmartPointer<vtkMatrix4x4> initialFrameMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
rotationMatrix = initialRotationMatrix;
- vtkMatrix4x4::Multiply4x4(initialRotationMatrix, initialTranslation->GetMatrix(), initialFrameMatrix);
+ if(!rotationMatrix) {
+ rotationMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
+ rotationMatrix->Identity();
+ }
+ vtkMatrix4x4::Multiply4x4(rotationMatrix, initialTranslation->GetMatrix(), initialFrameMatrix);
vtkMatrix4x4::Multiply4x4(initialFrameMatrix, orientationToRAIMatrix, initialFrameMatrix);
initialFrameTransform->SetMatrix(initialFrameMatrix);
// 6. Apply initialImageDataTransform to the image data
vtkSmartPointer<vtkImageReslice> imageResliceFilter = vtkSmartPointer<vtkImageReslice>::New();
- imageResliceFilter->SetInput(anImageData);
+ imageResliceFilter->SetInputData(inputImage);
imageResliceFilter->SetOutputDimensionality(3);
imageResliceFilter->SetResliceAxes(initialImageDataTransform->GetMatrix());
+ imageResliceFilter->Update();
originalImageData = imageResliceFilter->GetOutput();
- originalImageData->Update();
// 7. Store initialFrameTransform as the current frame
// note: we need to get another matrix instance for the transformation (else it is deleted)
@@ -293,6 +307,10 @@ void ImageComponent::setImageData(vtkSmartPointer<vtkImageData> anImageData,
updatedTransform->SetMatrix(updatedMatrix);
setTransform(updatedTransform);
+ // Clean smart pointers
+ inputImage = NULL;
+ imageResliceFilter = NULL;
+
// Build default lookup table
initLookupTable();
@@ -303,75 +321,70 @@ void ImageComponent::setImageData(vtkSmartPointer<vtkImageData> anImageData,
updateImageProperties();
}
-// -------------------- prepareForSaving --------------------
-void ImageComponent::prepareForSaving() {
+// -------------------- getImageDataWithFrameTransform --------------------
+vtkSmartPointer<vtkImageData> ImageComponent::getImageDataWithFrameTransform() {
+ vtkSmartPointer<vtkImageData> imageDataFramed = vtkSmartPointer<vtkImageData>::New();
+ imageDataFramed->DeepCopy(originalImageData);
// 1. Put back image data to its original state
- vtkSmartPointer<vtkMatrix4x4> backToOriginalImageDataMatrix = vtkMatrix4x4::New();
+ vtkSmartPointer<vtkMatrix4x4> backToOriginalImageDataMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
backToOriginalImageDataMatrix->DeepCopy(initialImageDataTransform->GetMatrix());
backToOriginalImageDataMatrix->Invert();
vtkSmartPointer<vtkImageReslice> backToOrigingImageDataFilter = vtkSmartPointer<vtkImageReslice>::New();
- backToOrigingImageDataFilter->SetInput(originalImageData);
+ backToOrigingImageDataFilter->SetInputData(imageDataFramed);
backToOrigingImageDataFilter->SetOutputDimensionality(3);
backToOrigingImageDataFilter->SetResliceAxes(backToOriginalImageDataMatrix);
- originalImageData = backToOrigingImageDataFilter->GetOutput();
- originalImageData->Update();
+ imageDataFramed = backToOrigingImageDataFilter->GetOutput();
+ backToOrigingImageDataFilter->Update();
// 2. Retrieve the matrice of the user Muser which has been applied to the initial frame
// Assuming Mframe = MinitFrame * Muser
- vtkSmartPointer<vtkMatrix4x4> initialFrameMatrixInverse = vtkMatrix4x4::New();
+ vtkSmartPointer<vtkMatrix4x4> initialFrameMatrixInverse = vtkSmartPointer<vtkMatrix4x4>::New();
initialFrameMatrixInverse->DeepCopy(initialFrameTransform->GetMatrix());
initialFrameMatrixInverse->Invert();
const vtkSmartPointer<vtkTransform> frame = getTransform();
vtkSmartPointer<vtkMatrix4x4> frameMatrix = frame->GetMatrix();
- vtkSmartPointer<vtkMatrix4x4> userMatrix = vtkMatrix4x4::New();
+ vtkSmartPointer<vtkMatrix4x4> userMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
vtkMatrix4x4::Multiply4x4(initialFrameMatrixInverse, frameMatrix , userMatrix);
- vtkSmartPointer<vtkTransform> userTransform = vtkTransform::New();
+
+ vtkSmartPointer<vtkTransform> userTransform = vtkSmartPointer<vtkTransform>::New();
userTransform->SetMatrix(userMatrix);
// 3. Retrieve the translation of the user matrix and apply it to the image data
// This way, the translation will be saved under the Offset tag
double pos[3];
userTransform->GetPosition(pos);
- vtkSmartPointer<vtkTransform> translationTransform = vtkTransform::New();
+ vtkSmartPointer<vtkTransform> translationTransform = vtkSmartPointer<vtkTransform>::New();
translationTransform->Identity();
translationTransform->Translate(pos[0], pos[1], pos[2]);
translationTransform->Update();
vtkSmartPointer<vtkImageReslice> translationFilter = vtkSmartPointer<vtkImageReslice>::New();
- translationFilter->SetInput(originalImageData);
+ translationFilter->SetInputData(imageDataFramed);
translationFilter->SetOutputDimensionality(3);
translationFilter->SetResliceAxes(translationTransform->GetMatrix());
- originalImageData = translationFilter->GetOutput();
- originalImageData->Update();
+ imageDataFramed = translationFilter->GetOutput();
+ translationFilter->Update();
// 4. Retrieve the rotation matrix from the user matrix to manually save it
// only if user has modify it
if( (userMatrix->GetElement(0,0) != 1) ||
- (userMatrix->GetElement(1,1) != 1) ||
- (userMatrix->GetElement(2,2) != 1) ){
+ (userMatrix->GetElement(1,1) != 1) ||
+ (userMatrix->GetElement(2,2) != 1) ) {
- rotationMatrix = vtkMatrix4x4::New();
+ rotationMatrix = vtkSmartPointer<vtkMatrix4x4>::New();
rotationMatrix->DeepCopy(userMatrix);
rotationMatrix->SetElement(0, 3, 0.0);
rotationMatrix->SetElement(1, 3, 0.0);
rotationMatrix->SetElement(2, 3, 0.0);
}
-}
-// -------------------- postSaving --------------------
-void ImageComponent::postSaving(){
- // Revert changes made on image data
- vtkSmartPointer<vtkImageReslice> revertImageDataFilter = vtkSmartPointer<vtkImageReslice>::New();
- revertImageDataFilter->SetInput(originalImageData);
- revertImageDataFilter->SetOutputDimensionality(3);
- revertImageDataFilter->SetResliceAxes(initialImageDataTransform->GetMatrix());
- originalImageData = revertImageDataFilter->GetOutput();
- originalImageData->Update();
+ return imageDataFramed;
}
// -------------------- initLookupTable --------------------
void ImageComponent::initLookupTable() {
+
// TODO set in a betterway information about the lut thanks to image data
if (this->originalImageData->GetNumberOfScalarComponents() == 1) {
// Default values for grey level lut
@@ -387,10 +400,9 @@ void ImageComponent::initLookupTable() {
} else {
// For colored image, we need to extract the information from the image
- // but a classic lut is not really easy to use.
- // delete default LUT
- //lut = NULL;
- lut->ForceBuild();
+ // but a classic lut is useless (if there is one, it displays wrong information)
+ // do not consider a lut for colored images
+ lut = NULL;
}
}
@@ -427,8 +439,6 @@ void ImageComponent::replaceImageData(vtkSmartPointer<vtkImageData> anImageData,
volumeRenderingChild = NULL;
}
- deleteChildren();
-
this->refreshInterfaceNode();
setImageData(anImageData, copy, initialOrientation);
@@ -456,6 +466,7 @@ SingleImageComponent * ImageComponent::getArbitrarySlices() {
return this->arbitrarySlices;
}
+// ---------------- getVolumeRenderingChild -------------------
MeshComponent * ImageComponent::getVolumeRenderingChild() {
return this->volumeRenderingChild;
}
diff --git a/sdk/libraries/core/component/image/ImageComponent.h b/sdk/libraries/core/component/image/ImageComponent.h
index cf19fb0..fa07c6b 100644
--- a/sdk/libraries/core/component/image/ImageComponent.h
+++ b/sdk/libraries/core/component/image/ImageComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -60,10 +60,6 @@ class MeshComponent;
* An image volume data has no concrete 3D representation,
* but handles several sub-components for axial, sagittal and coronal slices.
*
- * Maybe sometime we should add a volume rendering representation
- * See the method build3DVolume() in the former Image class...
- * Or the 3D representation could also be a 3D marching cube reconstruction...
- *
* Vtk Pipeline:
* \verbatim
* \endverbatim
@@ -89,7 +85,7 @@ public:
throw( AbortException ) ;
/// Destructor
- ~ImageComponent();
+ virtual ~ImageComponent();
/// set selected will select all the Image components (axial, sagittal and coronal).
virtual void setSelected( const bool b, const bool recursive = false );
@@ -103,21 +99,18 @@ public:
return originalImageData;
}
+ /**
+ * Compute a copy of the original image data on which the frame transform has been applied.
+ * This allows to keep all the frame transform information on the file when saving it.
+ * @return a vtkImageData deep copied from the original image data on which the frame transform has been applied.
+ */
+ vtkSmartPointer<vtkImageData> getImageDataWithFrameTransform();
+
/// Get the initial image orientation
ImageOrientationHelper::PossibleImageOrientations getInitialOrientation() const {
return initialOrientation;
}
- /// Prepare the ImageComponent for saving
- /// Apply its frame transform to its imageData. This way, original translation and image orientation are saved
- /// Also, the frame modification on the image are saved
- void prepareForSaving();
-
- /// Revert all changes made to the image (data and its frame) to save it correctly
- /// This allows to correctly manipulate the image again.
- void postSaving();
-
-
/** Method called when a pixel has been picked in the 3D view.
* This method tells all the scene3D to display the slice containing the picked pixel.
* The arguments are the ccordinates of the 3D point.
@@ -221,7 +214,9 @@ public:
virtual QWidget * getPropertyWidgetAt( unsigned int i, QWidget* parent = 0 );
///@}
- const vtkSmartPointer<vtkMatrix4x4> getRotationMatrix() { return rotationMatrix; }
+ const vtkSmartPointer<vtkMatrix4x4> getRotationMatrix() {
+ return rotationMatrix;
+ }
protected:
diff --git a/sdk/libraries/core/component/image/ImageComponentExtension.cpp b/sdk/libraries/core/component/image/ImageComponentExtension.cpp
index 7d81d04..6032e28 100644
--- a/sdk/libraries/core/component/image/ImageComponentExtension.cpp
+++ b/sdk/libraries/core/component/image/ImageComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/ImageComponentExtension.h b/sdk/libraries/core/component/image/ImageComponentExtension.h
index 92efad7..8910bda 100644
--- a/sdk/libraries/core/component/image/ImageComponentExtension.h
+++ b/sdk/libraries/core/component/image/ImageComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/ImageOrientationHelper.cpp b/sdk/libraries/core/component/image/ImageOrientationHelper.cpp
index ecb42c8..ae22f64 100644
--- a/sdk/libraries/core/component/image/ImageOrientationHelper.cpp
+++ b/sdk/libraries/core/component/image/ImageOrientationHelper.cpp
@@ -86,9 +86,6 @@ vtkSmartPointer<vtkMatrix4x4> ImageOrientationHelper::getTransformFromRAI(Possib
vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
transform->Identity();
- // DEBUG
- std::cout << "ImageOrientationHelper::getTransformFromRAI = (" << dimX << ", " << dimY << ", " << dimZ << ")" << std::endl;
-
switch (orientation) {
default:
case RAI:
@@ -328,7 +325,7 @@ vtkSmartPointer<vtkMatrix4x4> ImageOrientationHelper::getTransformToRAI(Possible
vtkSmartPointer<vtkMatrix4x4> transformMatrix = getTransformFromRAI(orientation, myDimX, myDimY, myDimZ);
- vtkSmartPointer<vtkTransform> transform = vtkTransform::New();
+ vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
transform->SetMatrix(transformMatrix);
transform->Inverse();
transform->Update();
diff --git a/sdk/libraries/core/component/image/ItkProgressObserver.h b/sdk/libraries/core/component/image/ItkProgressObserver.h
index 0cfa434..108993f 100644
--- a/sdk/libraries/core/component/image/ItkProgressObserver.h
+++ b/sdk/libraries/core/component/image/ItkProgressObserver.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/SingleImageComponent.cpp b/sdk/libraries/core/component/image/SingleImageComponent.cpp
index 17b2d2e..5086b3d 100644
--- a/sdk/libraries/core/component/image/SingleImageComponent.cpp
+++ b/sdk/libraries/core/component/image/SingleImageComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/SingleImageComponent.h b/sdk/libraries/core/component/image/SingleImageComponent.h
index 547cf90..1166d78 100644
--- a/sdk/libraries/core/component/image/SingleImageComponent.h
+++ b/sdk/libraries/core/component/image/SingleImageComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/itkImageToVTKImageFilter.h b/sdk/libraries/core/component/image/itkImageToVTKImageFilter.h
index 5431273..fe8e5f1 100644
--- a/sdk/libraries/core/component/image/itkImageToVTKImageFilter.h
+++ b/sdk/libraries/core/component/image/itkImageToVTKImageFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/itkVTKImageToImageFilter.h b/sdk/libraries/core/component/image/itkVTKImageToImageFilter.h
index 0344526..a85054a 100644
--- a/sdk/libraries/core/component/image/itkVTKImageToImageFilter.h
+++ b/sdk/libraries/core/component/image/itkVTKImageToImageFilter.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/component/image/itkVTKImageToImageFilter.txx b/sdk/libraries/core/component/image/itkVTKImageToImageFilter.txx
index b9d4e88..9748158 100644
--- a/sdk/libraries/core/component/image/itkVTKImageToImageFilter.txx
+++ b/sdk/libraries/core/component/image/itkVTKImageToImageFilter.txx
@@ -33,7 +33,7 @@ VTKImageToImageFilter<TOutputImage>
::VTKImageToImageFilter()
{
- m_Exporter = vtkImageExport::New();
+ m_Exporter = vtkSmartPointer<vtkImageExport>::New();
m_Importer = ImporterFilterType::New();
@@ -79,7 +79,10 @@ void
VTKImageToImageFilter<TOutputImage>
::SetInput( vtkSmartPointer<vtkImageData> inputImage )
{
- m_Exporter->SetInput( inputImage );
+ // Artificially cut the pipeline...
+ vtkSmartPointer<vtkImageData> inputBis = vtkSmartPointer<vtkImageData>::New();
+ inputBis->ShallowCopy(inputImage);
+ m_Exporter->SetInputData( inputBis );
}
diff --git a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.cpp b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.cpp
index 6fa104d..5f68b56 100644
--- a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.cpp
+++ b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
-* (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -30,14 +30,91 @@ namespace camitk {
// -------------------- constructor --------------------
ImageAcquisitionComponent::ImageAcquisitionComponent(Component * comp, const QString & file) : Component(comp, file) {
+
+ workingImageComponent2D = NULL;
+ workingImageComponent3D = NULL;
+
+ imaging2D = false;
+ imaging3D = false;
}
// -------------------- constructor --------------------
ImageAcquisitionComponent::ImageAcquisitionComponent(const QString &file, const QString &name) : Component(file, name) {
+
+ workingImageComponent2D = NULL;
+ workingImageComponent3D = NULL;
+
+ imaging2D = false;
+ imaging3D = false;
+
}
// -------------------- destructor --------------------
ImageAcquisitionComponent::~ImageAcquisitionComponent() {
}
+//---------------- setImageComponent2D ----------------
+void ImageAcquisitionComponent::setImageComponent2D(ImageComponent * input) {
+
+ workingImageComponent2D = input;
+
+}
+
+//------------------ startImaging2D -------------------
+void ImageAcquisitionComponent::startImaging2D() {
+}
+
+//------------------ startImaging3D -------------------
+void ImageAcquisitionComponent::startImaging3D() {
+}
+
+//------------------ stopImaging2D -------------------
+void ImageAcquisitionComponent::stopImaging2D() {
+}
+
+//------------------ stopImaging3D -------------------
+void ImageAcquisitionComponent::stopImaging3D() {
+}
+
+//--------------- singleAcquisition2D ----------------
+void ImageAcquisitionComponent::singleAcquisition2D() {
+}
+
+//--------------- singleAcquisition3D ----------------
+void ImageAcquisitionComponent::singleAcquisition3D() {
+}
+
+//---------------- getImageComponent2D ----------------
+ImageComponent * ImageAcquisitionComponent::getImageComponent2D() {
+
+ return workingImageComponent2D;
+
+}
+
+//---------------- setImageComponent3D ----------------
+void ImageAcquisitionComponent::setImageComponent3D(ImageComponent * input) {
+
+ workingImageComponent3D = input;
+
+}
+
+//---------------- getImageComponent3D ----------------
+ImageComponent * ImageAcquisitionComponent::getImageComponent3D() {
+
+ return workingImageComponent3D;
+
+}
+
+//-------------------- isImaging2D --------------------
+bool ImageAcquisitionComponent::isImaging2D() {
+
+ return imaging2D;
+}
+
+//-------------------- isImaging3D --------------------
+bool ImageAcquisitionComponent::isImaging3D() {
+
+ return imaging3D;
+}
+
}
diff --git a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.h b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.h
index 5e2c3bd..07a6c1f 100644
--- a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.h
+++ b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -28,19 +28,31 @@
// -- CamiTK Core stuff
#include <Component.h>
+#include <ImageComponent.h>
namespace camitk {
/**
* @brief
* This class describes what is a generic Image Acquisition Component which derives from Component.
- * To add a ImageAcquisitionComponent to the LoCalIm CEP, write a new class that inherits from this class.
+ * To support a new acquisition device, you need to write a new ImageAcquisitionComponent subclass and
+ * add it to your CEP, write a new class that inherits from this class.
*
* In order to inherits from this class, the followed methods have to be redefined:
- * -init
- * -run
- * -stop
- * -acquireImage
+ * -initImager
+ * -startImaging2D
+ * -stopImaging2D
+ * -startImaging3D
+ * -stopImaging3D
+ * -singleAcquisition2D
+ * -singleAcquisition3D
+ * -setImageComponent2D();
+ * -getImageComponent2D();
+ * -setImageComponent3D();
+ * -getImageComponent3D();
+ * -isImaging2D();
+ * -isImaging3D();
*/
+
class CAMITK_API ImageAcquisitionComponent : public Component {
Q_OBJECT
@@ -56,17 +68,63 @@ public:
/// destructor
virtual ~ImageAcquisitionComponent();
- /// pure virtual method to define a way to initialize your ImageComponent
- virtual void init() = 0;
+ /// pure virtual method to define a way to initialize your acquisition device
+ virtual void initImager() = 0;
+
+ /// virtual method to define a way to start the 2D acquisition done with the device (i.e : running a acquisition in live mode...)
+ virtual void startImaging2D();
+
+ /// virtual method to define a way to stop the 2D continuous acquisition performed by your device
+ virtual void stopImaging2D();
+
+ /// virtual method to define a way to start the 3D continuous acquisition performed by your device
+ virtual void startImaging3D();
+
+ /// virtual method to define a way to stop the 3D continuous acquisition performed by your device
+ virtual void stopImaging3D();
+
+ /// virtual method to define a way to acquire one 2D ImageComponent by your device
+ virtual void singleAcquisition2D();
+
+ /// virtual method to define a way to acquire one 3D ImageComponent by your device
+ virtual void singleAcquisition3D();
+
+ /** Method to set the 2D ImageComponent used by ImageAcquisitionComponent
+ * param input the 2D ImageComponent refreshed by ImageAcquisitionComponent
+ */
+ void setImageComponent2D(ImageComponent * input);
+
+ /// Method to get the 2D ImageComponent used by ImageAcquisitionComponent
+ ImageComponent * getImageComponent2D();
+
+ /** Method to set the 3D ImageComponent used by ImageAcquisitionComponent
+ * param input the 3D ImageComponent refreshed by ImageAcquisitionComponent
+ */
+ void setImageComponent3D(ImageComponent * input);
+
+ /// Method to get the 3D ImageComponent used by ImageAcquisitionComponent
+ ImageComponent * getImageComponent3D();
+
+ /// Method to know if ImageAcquisitionComponent is currently imaging in 2D
+ bool isImaging2D();
+
+ /// Method to know if ImageAcquisitionComponent is currently imaging in 3D
+ bool isImaging3D();
+
+protected:
+
+ /// A pointer to the working 2D ImageComponent, either create by user or automatically created by ImageAcquisitionComponent
+ ImageComponent * workingImageComponent2D;
+
+ /// A pointer to the working 3D ImageComponent, either create by user or automatically created by ImageAcquisitionComponent
+ ImageComponent * workingImageComponent3D;
- /// pure virtual method to define a way to start the acquisition done with the ImageComponent (i.e : running a acquisition in live...)
- virtual void run() = 0;
+ /// A boolean to know is the ImageAcquisitionComponent is imaging in 2D
+ bool imaging2D;
- /// pure virtual method to define a way to stop the acqusition performed during the process of your ImageComponent
- virtual void stop() = 0;
+ /// A boolean to know is the ImageAcquisitionComponent is imaging in 3D
+ bool imaging3D;
- /// pure virtual method to define a way to acquire an imageComponent during the process of your ImageComponent
- virtual void acquireImage() = 0;
};
}
diff --git a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.cpp b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.cpp
index f20503c..cd4965b 100644
--- a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.cpp
+++ b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
-* (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,8 +43,7 @@ QStringList ImageAcquisitionComponentExtension::getImagerList() {
QStringList listImageAcqui;
foreach (ComponentExtension *ce, compExt) {
if( dynamic_cast<ImageAcquisitionComponentExtension*>(ce)) {
- //we found a ImageAcquisitionComponentExtension:: we add to the list
-
+ // a new ImageAcquisitionComponentExtension:: we add to the list
ImageAcquisitionComponentExtension *im = dynamic_cast<ImageAcquisitionComponentExtension*>(ce);
listImageAcqui.append(im->getName());
}
diff --git a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.h b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.h
index 2990405..125c36f 100644
--- a/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.h
+++ b/sdk/libraries/core/component/imageacquisition/ImageAcquisitionComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -40,19 +40,28 @@ namespace camitk {
* @brief
* This class describes what is a generic Image Acquisition Component extension.
* To add a ImageAcquisitionComponentExtension write a new class that inherits from this class.
- * Don't forget to add the dependency to the library in your CmakeLists (imageacquisitioninterface)
+ * Do not forget to add the dependency to the library in your CMakeList (imageacquisitioninterface)
*
- * This class derives from ComponentExtension and that's why children class of ImageAcquisitionComponentExtension
- * have to describe methods from Component Extension and this one.
+ * This class derives from ComponentExtension and that is why a subclass of ImageAcquisitionComponentExtension
+ * have to describe methods from ComponentExtension as well.
*
* The following methods HAVE to be redefined in your subclass:
- * - getName
- * - getDescription
- * - getFileExtensions
- * - open
- * - getInstance
+ * - getName() (from ComponentExtension)
+ * - getDescription() (from ComponentExtension)
+ * - getFileExtensions() (from ComponentExtension)
+ * - open() (from ComponentExtension)
+ * - getInstance() (from ImageAcquisitionComponentExtension)
*
- * The following methods can be redefined (inherited from Component Extension):
+ * \note
+ * getInstance() method should just return a new instance of your ImageAcquisitionComponent subclass.
+ *
+ * \note
+ * ImageAcquisitionComponentExtension works as a factory.
+ * - getImagerList() automatically looks for all ImageAcquisitionComponentExtension subclass and add
+ * them automatically to the list of possible instance produced by the factory.
+ * This way a new device can be added on the fly by adding new extensions.
+ *
+ * The following methods can also be redefined (inherited from Component Extension):
* - save: saving from a Component to one of the managed format
* - hasDataDirectory: for directory type extension
*/
diff --git a/sdk/libraries/core/component/mesh/MeshComponent.cpp b/sdk/libraries/core/component/mesh/MeshComponent.cpp
index 1ef80d6..60f29b4 100644
--- a/sdk/libraries/core/component/mesh/MeshComponent.cpp
+++ b/sdk/libraries/core/component/mesh/MeshComponent.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
-* (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+* (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,7 +23,6 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
-
#include "MeshComponent.h"
#include "InteractiveViewer.h"
#include "Property.h"
@@ -34,6 +33,9 @@
#include <QTextStream>
#include <QFileInfo>
#include <QTableView>
+#include <QBoxLayout>
+#include <QToolBar>
+#include <QList>
//-- vtk stuff
#include <vtkPointSet.h>
@@ -52,116 +54,193 @@
#include <vtkExtractSelection.h>
#include <vtkDataSetMapper.h>
#include <vtkProperty.h>
+#include <vtkHedgeHog.h>
+#include <vtkTensorGlyph.h>
+#include <vtkActor.h>
+#include <vtkSphereSource.h>
+#include <vtkCellCenters.h>
namespace camitk {
// -------------------- constructor --------------------
-MeshComponent::MeshComponent ( const QString & file ) throw ( AbortException ) : Component ( file, "Mesh", Component::GEOMETRY ) {
+MeshComponent::MeshComponent(const QString & file) throw (AbortException) : Component(file, "Mesh", Component::GEOMETRY) {
init();
}
-MeshComponent::MeshComponent ( vtkSmartPointer<vtkPointSet> aPointSet, const QString &name ) : Component ( "", name, Component::GEOMETRY ) {
+MeshComponent::MeshComponent(vtkSmartPointer<vtkPointSet> aPointSet, const QString & name) : Component("", name, Component::GEOMETRY) {
init();
- initRepresentation ( aPointSet );
+ initRepresentation(aPointSet);
setModified();
}
-MeshComponent::MeshComponent ( Component *parentComponent, vtkSmartPointer<vtkPointSet> aPointSet, const QString &name ) : Component ( parentComponent, name, Component::GEOMETRY ) {
+MeshComponent::MeshComponent(Component * parentComponent, vtkSmartPointer<vtkPointSet> aPointSet, const QString & name) : Component(parentComponent, name, Component::GEOMETRY) {
init();
- initRepresentation ( aPointSet );
+ initRepresentation(aPointSet);
}
// -------------------- destructor --------------------
MeshComponent::~MeshComponent() {
- if (selectionView != NULL)
- delete selectionView;
- if (dataView != NULL)
- delete dataView;
+ if (getPointSet() != NULL)
+ setActiveData(MeshDataModel::POINTS, NULL);
+
+ if (selectionWidget != NULL)
+ delete selectionWidget;
+
+ if (dataWidget != NULL)
+ delete dataWidget;
}
void MeshComponent::init() {
pickedCellId = -1;
pickedPointId = -1;
- selectionModel = new MeshSelectionModel ( this );
+ // selection widget
+ selectionWidget = new QWidget();
+ selectionWidget->setObjectName("Selection");
- // create selection view
- selectionView = new QTableView();
- selectionView->setObjectName ( "Selection" );
- selectionView->setSelectionBehavior(QAbstractItemView::SelectRows);
- selectionView->setModel ( selectionModel );
- selectionView->setSelectionMode(QAbstractItemView::SingleSelection);
+ // selection actions
+ removeSelections = new QAction(QPixmap(":/delete"), tr("Remove selection(s)"), this);
+ removeSelections->setStatusTip(tr("Remove the selected selections"));
+ removeSelections->setWhatsThis(tr("Remove the selected selections"));
+ connect(removeSelections, SIGNAL(triggered()), this, SLOT(removeSelectedSelections()));
+
+ inspectSelection = new QAction(QPixmap(":/settings"), tr("Inspect the selection"), this);
+ inspectSelection->setStatusTip(tr("Inspect the selection"));
+ inspectSelection->setWhatsThis(tr("Inspect the selection"));
+
+ mergeSelection = new QAction(QPixmap(":/refresh"), tr("Merge the selections"), this);
+ mergeSelection->setStatusTip(tr("Merge the selected selection"));
+ mergeSelection->setWhatsThis(tr("Merge the selected delections (selection types must be identical)"));
+
+ // selection model
+ selectionModel = new MeshSelectionModel(this);
- // create data view
- dataModel = new MeshDataModel( this );
- dataView = new QTableView();
- dataView->setObjectName ( "Data" );
+ // selection view
+ selectionView = new MeshSelectionView(selectionWidget);
+ selectionView->setSelectionBehavior(QAbstractItemView::SelectRows);
+ selectionView->setModel(selectionModel);
+ selectionView->setSelectionMode(QAbstractItemView::ExtendedSelection);
+ selectionView->setEditTriggers(QAbstractItemView::DoubleClicked);
+
+ policyBox = new QComboBox(selectionView);
+ policyBox->setStatusTip(tr("Insertion policy"));
+ policyBox->setWhatsThis(tr("Insertion policy"));
+ policyBox->addItem("Replace", MeshSelectionModel::REPLACE);
+ policyBox->addItem("Merge", MeshSelectionModel::MERGE);
+ policyBox->addItem("Substract", MeshSelectionModel::SUBSTRACT);
+ policyBox->addItem("Discard", MeshSelectionModel::DISCARD);
+
+ // build the selection widget
+ QVBoxLayout * hbox = new QVBoxLayout(selectionWidget);
+ QToolBar * selectionToolBar = new QToolBar(selectionWidget);
+ selectionToolBar->addAction(removeSelections);
+ selectionToolBar->addAction(mergeSelection);
+ selectionToolBar->addAction(inspectSelection);
+ selectionToolBar->addWidget(policyBox);
+ hbox->addWidget(selectionView);
+ hbox->addWidget(selectionToolBar);
+ selectionWidget->setLayout(hbox);
+
+ // data widget
+ dataWidget = new QWidget();
+ dataWidget->setObjectName("Data");
+
+ // selection actions
+ removeData = new QAction(QPixmap(":/delete"), tr("Remove data"), this);
+ removeData->setStatusTip(tr("Remove the selected data"));
+ removeData->setWhatsThis(tr("Remove the selected data"));
+ connect(removeData, SIGNAL(triggered()), this, SLOT(removeSelectedData()));
+
+ inspectData = new QAction(QPixmap(":/settings"), tr("Inspect data"), this);
+ inspectData->setStatusTip(tr("Inspect data"));
+ inspectData->setWhatsThis(tr("Inspect data"));
+
+ // data model
+ dataModel = new MeshDataModel(this);
+
+ // data view
+ dataView = new MeshDataView();
dataView->setSelectionBehavior(QAbstractItemView::SelectRows);
- dataView->setModel ( dataModel );
- dataView->setSelectionMode(QAbstractItemView::SingleSelection);
+ dataView->setModel(dataModel);
+ dataView->setSelectionMode(QAbstractItemView::ExtendedSelection);
+
+ // build the data widget
+ QVBoxLayout * dataBox = new QVBoxLayout(dataWidget);
+ QToolBar * dataToolBar = new QToolBar(dataWidget);
+ dataToolBar->addAction(removeData);
+ dataToolBar->addAction(inspectData);
+ dataBox->addWidget(dataView);
+ dataBox->addWidget(dataToolBar);
+ dataWidget->setLayout(dataBox);
- connect(selectionView->selectionModel(), SIGNAL(currentChanged(const QModelIndex&, const QModelIndex&)), this, SLOT(changeSelectedSelection(const QModelIndex&, const QModelIndex&)));
+ connect(selectionView->selectionModel(), SIGNAL(selectionChanged(const QItemSelection &, const QItemSelection &)), this, SLOT(changeSelectedSelection(const QItemSelection &, const QItemSelection &)));
// selection
currentSelection = vtkSmartPointer<vtkSelection>::New();
- vtkSmartPointer<vtkSelectionNode> selectedPoints = vtkSmartPointer<vtkSelectionNode>::New();
- selectedPoints->SetFieldType ( vtkSelectionNode::POINT );
- selectedPoints->SetContentType ( vtkSelectionNode::INDICES );
- vtkSmartPointer<vtkSelectionNode> selectedCells = vtkSmartPointer<vtkSelectionNode>::New();
- selectedCells->SetFieldType ( vtkSelectionNode::CELL );
- selectedCells->SetContentType ( vtkSelectionNode::INDICES );
- selectionList ["Selected Points"] = selectedPoints;
- selectionList ["Selected Cells"] = selectedCells;
- selectionModel->refresh();
}
// -------------------- initRepresentation --------------------
-void MeshComponent::initRepresentation ( vtkSmartPointer<vtkPointSet> originalPointSet ) {
+void MeshComponent::initRepresentation(vtkSmartPointer<vtkPointSet> originalPointSet) {
// if there is no point set yet, just do nothing
- if ( originalPointSet == NULL )
+ if (originalPointSet == NULL)
return;
+
// else replace the point set
- if ( myGeometry ) {
- myGeometry->setPointSet ( originalPointSet );
+ if (myGeometry) {
+ myGeometry->setPointSet(originalPointSet);
} else {
- myGeometry = new Geometry ( this->getName(), originalPointSet );
+ myGeometry = new Geometry(this->getName(), originalPointSet);
}
+
myGeometry->setMeshWorldTransform(getTransformFromWorld());
// add it in the InteractiveViewer (automatically)
- setVisibility ( InteractiveViewer::get3DViewer(), true );
+ setVisibility(InteractiveViewer::get3DViewer(), true);
+
+ // initialize selection
+ initSelection();
+
+ // initialize data
+ initData();
+ // initialize dynamic properties
+ initDynamicProperties();
+}
+
+// -------------------- initSelection --------------------
+void MeshComponent::initSelection() {
vtkSmartPointer<vtkExtractSelection> selectionExtractor = vtkSmartPointer<vtkExtractSelection>::New();
vtkSmartPointer<vtkActor> selectionActor = vtkSmartPointer<vtkActor>::New();
vtkSmartPointer<vtkDataSetMapper> selectionMapper = vtkSmartPointer<vtkDataSetMapper>::New();
- //-- selection
- selectionExtractor->SetInputConnection ( 0, this->getDataPort() );
- selectionExtractor->SetInput ( 1, currentSelection );
+ selectionExtractor->SetInputConnection(0, this->getDataPort());
+ selectionExtractor->SetInputData(1, currentSelection);
selectionMapper->SetInputConnection(selectionExtractor->GetOutputPort());
- selectionActor->SetPickable ( false );
+ selectionActor->SetPickable(false);
selectionActor->GetProperty()->SetRepresentationToSurface();
- selectionActor->GetProperty()->SetLineWidth ( 5 );
- selectionActor->GetProperty()->SetColor ( 1,0,0 );
- selectionActor->GetProperty()->SetPointSize(5);
- selectionActor->GetProperty()->SetOpacity ( 0.2 );
+ selectionActor->GetProperty()->SetLineWidth(5);
+ selectionActor->GetProperty()->SetColor(1, 0, 0);
+ selectionActor->GetProperty()->SetPointSize(10);
+ selectionActor->GetProperty()->SetOpacity(0.2);
selectionActor->SetMapper(selectionMapper);
- addProp("Selection",selectionActor);
+ addProp("Selection", selectionActor);
+}
- // initialize the dynamic properties
- initDynamicProperties();
+// -------------------- initData --------------------
+void MeshComponent::initData() {
+ dataModel->refresh();
}
// -------------------- cellPicked --------------------
-void MeshComponent::cellPicked ( vtkIdType cellId, bool ) {
+void MeshComponent::cellPicked(vtkIdType cellId, bool) {
pickedCellId = cellId;
}
// -------------------- pointPicked --------------------
-void MeshComponent::pointPicked ( vtkIdType pointId, bool ) {
+void MeshComponent::pointPicked(vtkIdType pointId, bool) {
pickedPointId = pointId;
}
@@ -179,244 +258,587 @@ vtkIdType MeshComponent::getPickedPointId() {
void MeshComponent::initDynamicProperties() {
vtkIdType count = 0;
- if ( getPointSet() !=NULL )
+ if (getPointSet() != NULL)
count = getPointSet()->GetNumberOfPoints();
- Property *nbPoints = new Property ( "Number Of Points", QVariant ( QString ( "%1" ).arg ( count ) ), "Number of 3D Points composing the geometry", "" );
- nbPoints->setReadOnly ( true );
- addProperty ( nbPoints );
- if ( getPointSet() !=NULL )
+ Property * nbPoints = new Property("Number Of Points", QVariant(QString("%1").arg(count)), "Number of 3D Points composing the geometry", "");
+ nbPoints->setReadOnly(true);
+ addProperty(nbPoints);
+
+ if (getPointSet() != NULL)
count = getPointSet()->GetNumberOfCells();
- Property *nbCells = new Property ( "Number Of Cells", QVariant ( QString ( "%1" ).arg ( count ) ), "Number of Cells composing the geometry", "" );
- nbCells->setReadOnly ( true );
- addProperty ( nbCells );
- if ( getPointSet() !=NULL ) {
+ Property * nbCells = new Property("Number Of Cells", QVariant(QString("%1").arg(count)), "Number of Cells composing the geometry", "");
+ nbCells->setReadOnly(true);
+ addProperty(nbCells);
+
+ if (getPointSet() != NULL) {
// add a dynamic property to manage the surface color
// setProperty("position point #1", QVector3D(1.0,0.0,0.0));
vtkSmartPointer<vtkGenericCell> cell = vtkGenericCell::New();
std::map<unsigned char, int> elementsMap;
std::map<unsigned char, int>::iterator elementsMapIt;
- for ( int i=0; i<getPointSet()->GetNumberOfCells(); i++ ) {
- getPointSet()->GetCell ( i, cell );
+ for (int i = 0; i < getPointSet()->GetNumberOfCells(); i++) {
+ getPointSet()->GetCell(i, cell);
- if ( !elementsMap.count ( cell->GetCellType() ) )
+ if (!elementsMap.count(cell->GetCellType()))
elementsMap[ cell->GetCellType()] = 0;
+
elementsMap[ cell->GetCellType() ]++;
}
// the list of all possible cell types is defined in VTKCellType enum of the VTKCellType class
- for ( elementsMapIt = elementsMap.begin(); elementsMapIt != elementsMap.end(); elementsMapIt++ ) {
- Property *cellProp;
- switch ( elementsMapIt->first ) {
+ for (elementsMapIt = elementsMap.begin(); elementsMapIt != elementsMap.end(); elementsMapIt++) {
+ Property * cellProp;
+
+ switch (elementsMapIt->first) {
case VTK_EMPTY_CELL:
- cellProp = new Property ( "Empty Cells", elementsMapIt->second, tr("Number Of Empty Cells"), "" );
+ cellProp = new Property("Empty Cells", elementsMapIt->second, tr("Number Of Empty Cells"), "");
break;
+
case VTK_VERTEX:
- cellProp = new Property ( "Vertex", elementsMapIt->second, tr("Number Of Vertex Cells"), "" );
+ cellProp = new Property("Vertex", elementsMapIt->second, tr("Number Of Vertex Cells"), "");
break;
+
case VTK_POLY_VERTEX:
- cellProp = new Property ( "Edges", elementsMapIt->second, tr("Number Of Edge Cells"), "" );
+ cellProp = new Property("Edges", elementsMapIt->second, tr("Number Of Edge Cells"), "");
break;
+
case VTK_LINE :
- cellProp = new Property ( "Lines", elementsMapIt->second, tr("Number Of Line Cells"), "" );
+ cellProp = new Property("Lines", elementsMapIt->second, tr("Number Of Line Cells"), "");
break;
+
case VTK_POLY_LINE:
- cellProp = new Property ( "Polylines", elementsMapIt->second, tr("Number Of Polylines Cells"), "" );
+ cellProp = new Property("Polylines", elementsMapIt->second, tr("Number Of Polylines Cells"), "");
break;
+
case VTK_TRIANGLE :
- cellProp = new Property ( "Triangles", elementsMapIt->second, tr("Number Of Triangle Cells"), "" );
+ cellProp = new Property("Triangles", elementsMapIt->second, tr("Number Of Triangle Cells"), "");
break;
+
case VTK_TRIANGLE_STRIP:
- cellProp = new Property ( "Triangle Strips", elementsMapIt->second, tr("Number Of Triangle Strip Cells"), "" );
+ cellProp = new Property("Triangle Strips", elementsMapIt->second, tr("Number Of Triangle Strip Cells"), "");
break;
+
case VTK_POLYGON:
- cellProp = new Property ( "Polygons", elementsMapIt->second, tr("Number Of Polygon Cells"), "" );
+ cellProp = new Property("Polygons", elementsMapIt->second, tr("Number Of Polygon Cells"), "");
break;
+
case VTK_PIXEL:
- cellProp = new Property ( "Pixels", elementsMapIt->second, tr("Number Of Pixel Cells"), "" );
+ cellProp = new Property("Pixels", elementsMapIt->second, tr("Number Of Pixel Cells"), "");
break;
+
case VTK_QUAD:
- cellProp = new Property ( "Quads", elementsMapIt->second, tr("Number Of Quad Cells"), "" );
+ cellProp = new Property("Quads", elementsMapIt->second, tr("Number Of Quad Cells"), "");
break;
+
case VTK_TETRA :
- cellProp = new Property ( "Tetrahedra", elementsMapIt->second, tr("Number Of Tetrahedral Cells"), "" );
+ cellProp = new Property("Tetrahedra", elementsMapIt->second, tr("Number Of Tetrahedral Cells"), "");
break;
+
case VTK_VOXEL:
- cellProp = new Property ( "Voxels", elementsMapIt->second, tr("Number Of Voxel Cells"), "" );
+ cellProp = new Property("Voxels", elementsMapIt->second, tr("Number Of Voxel Cells"), "");
break;
+
case VTK_HEXAHEDRON :
- cellProp = new Property ( "Hexahedra", elementsMapIt->second, tr("Number Of Hexahedral Cells"), "" );
+ cellProp = new Property("Hexahedra", elementsMapIt->second, tr("Number Of Hexahedral Cells"), "");
break;
+
case VTK_WEDGE :
- cellProp = new Property ( "Wedges", elementsMapIt->second, tr("Number Of Wedge Cells"), "" );
+ cellProp = new Property("Wedges", elementsMapIt->second, tr("Number Of Wedge Cells"), "");
break;
+
case VTK_PYRAMID :
- cellProp = new Property ( "Pyramids", elementsMapIt->second, tr("Number Of Pyramid Cells"), "" );
+ cellProp = new Property("Pyramids", elementsMapIt->second, tr("Number Of Pyramid Cells"), "");
break;
+
case VTK_PENTAGONAL_PRISM:
- cellProp = new Property ( "Pentagonal Prisms", elementsMapIt->second, tr("Number Of Pentagonal Prism Cells"), "" );
+ cellProp = new Property("Pentagonal Prisms", elementsMapIt->second, tr("Number Of Pentagonal Prism Cells"), "");
break;
+
case VTK_HEXAGONAL_PRISM:
- cellProp = new Property ( "Hexagonal Prisms", elementsMapIt->second, tr("Number Of Hexagonal Prism Cells"), "" );
+ cellProp = new Property("Hexagonal Prisms", elementsMapIt->second, tr("Number Of Hexagonal Prism Cells"), "");
break;
- default :
- cellProp = new Property ( "Others", elementsMapIt->second, tr("Number Of <i>Other Type Of Cells</i>. <br/>It can be quadratic isoparametric cells, Cubic isoparametric cells, <br/>convex group of points, higher order cells in parametric form, <br/>higher order cells (see VTKCellType enum for more information)"), "" );
+
+ default:
+ cellProp = new Property("Others", elementsMapIt->second, tr("Number Of <i>Other Type Of Cells</i>. <br/>It can be quadratic isoparametric cells, Cubic isoparametric cells, <br/>convex group of points, higher order cells in parametric form, <br/>higher order cells (see VTKCellType enum for more information)"), "");
break;
}
- cellProp->setReadOnly ( true );
- addProperty ( cellProp );
+
+ cellProp->setReadOnly(true);
+ addProperty(cellProp);
}
}
unsigned long memUsage = 0;
- if ( getPointSet() !=NULL )
+
+ if (getPointSet() != NULL)
memUsage = getPointSet()->GetActualMemorySize();
- Property *memoryUsage = new Property ( "Size In Memory", QVariant ( QString ( "%1" ).arg ( memUsage ) ), tr("Actual size of the data in kilobytes. <br/>This number is valid only after the pipeline has updated. <br/>The memory size returned is guaranteed to be greater than or <br/>equal to the memory required to represent the data<br/> (e.g., extra space in arrays, etc. are not included in the return value)."), "Kb" );
- memoryUsage->setReadOnly ( true );
- addProperty ( memoryUsage );
-}
-// -------------------- addSelection --------------------
-void MeshComponent::addSelection ( const QString& name, int fieldType, int contentType ) {
- vtkSmartPointer<vtkSelectionNode> sel = vtkSmartPointer<vtkSelectionNode>::New();
- sel->SetFieldType ( fieldType );
- sel->SetContentType ( contentType );
- selectionList [name] = sel;
- selectionModel->refresh();
+ Property * memoryUsage = new Property("Size In Memory", QVariant(QString("%1").arg(memUsage)), tr("Actual size of the data in kilobytes. <br/>This number is valid only after the pipeline has updated. <br/>The memory size returned is guaranteed to be greater than or <br/>equal to the memory required to represent the data<br/> (e.g., extra space in arrays, etc. are not included in the return value)."), "Kb");
+ memoryUsage->setReadOnly(true);
+ addProperty(memoryUsage);
}
-// -------------------- addToSelection --------------------
-void MeshComponent::addToSelection ( const QString& name, vtkSmartPointer< vtkAbstractArray > array ) {
- if ( !selectionList.contains ( name ) )
- return;
- selectionList [name]->SetSelectionList ( array );
- selectionModel->updateSelection(name);
- selectionView->selectionModel()->setCurrentIndex(selectionModel->index(selectionList.keys().indexOf(name), 0),QItemSelectionModel::ClearAndSelect | QItemSelectionModel::Rows);
+// -------------------- getSelections --------------------
+QList< vtkSmartPointer< vtkSelectionNode > > & MeshComponent::getSelections() {
+ return selectionList;
}
// -------------------- getNumberOfSelections --------------------
-int MeshComponent::getNumberOfSelections() const {
+unsigned int MeshComponent::getNumberOfSelections() const {
return selectionList.size();
}
+// -------------------- getActiveSelection --------------------
+vtkSmartPointer<vtkSelection> MeshComponent::getActiveSelection() const {
+ return currentSelection;
+}
+
// -------------------- getSelection --------------------
-vtkSmartPointer<vtkSelectionNode> MeshComponent::getSelection ( const QString& name ) const {
- if ( !selectionList.contains ( name ) )
- return NULL;
+vtkSmartPointer< vtkSelectionNode > MeshComponent::getSelection(const QString & name) const {
+ int indexOfSelection = getSelectionIndex(name);
+
+ if (indexOfSelection >= 0 && indexOfSelection < selectionList.size())
+ return getSelectionAt(indexOfSelection);
else
- return selectionList [name];
+ return NULL;
}
// -------------------- getSelectionAt --------------------
-vtkSmartPointer<vtkSelectionNode> MeshComponent::getSelectionAt ( int i ) const {
- return selectionList.values().at(i);
+vtkSmartPointer< vtkSelectionNode > MeshComponent::getSelectionAt(unsigned int index) const {
+ return selectionList.at(index);
}
-// -------------------- getSelectionList --------------------
-const QMap< QString, vtkSmartPointer< vtkSelectionNode > >& MeshComponent::getSelectionList() const {
- return selectionList;
+// -------------------- getSelectionIndex --------------------
+int MeshComponent::getSelectionIndex(const QString & name) const {
+ QList< vtkSmartPointer< vtkSelectionNode > >::const_iterator it = selectionList.constBegin();
+ int index = 0;
+ bool found = false;
+
+ while (it != selectionList.end() && !found) {
+ if ((*it)->GetSelectionList() && !QString::compare(QString((*it)->GetSelectionList()->GetName()), name))
+ found = true;
+ else {
+ index++;
+ it++;
+ }
+ }
+
+ if (found)
+ return index;
+ else
+ return -1;
}
-// -------------------- removeSelection --------------------
-void MeshComponent::removeSelection ( const QString& name ) {
- if ( !selectionList.contains ( name ) )
- return;
- selectionList.remove ( name );
- selectionModel->refresh();
+// -------------------- addSelection --------------------
+int MeshComponent::addSelection(const QString & name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy) {
+ int index = selectionModel->insertSelection(name, fieldType, contentType, array, policy);
+ return index;
+}
+
+// -------------------- addToSelectedSelection --------------------
+int MeshComponent::addToSelectedSelection(int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy) {
+ // use the current index to handle the case of multiple selection
+ int index = selectionView->selectionModel()->currentIndex().row();
+
+ // TODO : for now, we don't care about the policy parameter and use the one of the combo box
+ // but in the future, the policy should be selected by pressing modifiers keys
+ policy = (MeshSelectionModel::InsertionPolicy) policyBox->itemData(policyBox->currentIndex()).toInt();
+
+ // check if the current selection is selected (maybe it is not necessary ...)
+ if (selectionView->selectionModel()->isRowSelected(index, QModelIndex()))
+ index = addSelection(selectionList.at(index)->GetSelectionList()->GetName(), fieldType, contentType, array, policy);
+ else
+ index = addSelection("Picked Selection", fieldType, contentType, array, policy);
+
+ // forced clearing even if the selected index stay the same
+ // if not, display will not be updated
+ selectionView->clearSelection();
+ // select the added selection et set the current index
+ selectionView->selectionModel()->setCurrentIndex(selectionModel->index(index, 0, QModelIndex()), QItemSelectionModel::ClearAndSelect | QItemSelectionModel::Rows);
+
+ return index;
}
// -------------------- changeSelectedSelection --------------------
-void MeshComponent::changeSelectedSelection(const QModelIndex& current, const QModelIndex& previous) {
+// TODO : rename updateSelection
+void MeshComponent::changeSelectedSelection(const QItemSelection & selected, const QItemSelection & deselected) {
+ // remove all the selection nodes from the selection
currentSelection->RemoveAllNodes();
- if (current.isValid())
- currentSelection->AddNode(selectionList[selectionModel->data(selectionModel->index(current.row(), 0)).toString()]);
+ // do not use selected since it contains only the new selected selections
+ // QModelIndexList items = selected.indexes();
+ QModelIndex index;
+ QModelIndexList items = selectionView->selectionModel()->selectedRows();
// Select the PropertyExplorer 'Selection' tab for the currently selected component
if (!Application::getSelectedComponents().isEmpty()) {
- Component* currentComponent = Application::getSelectedComponents().last();
+ Component * currentComponent = Application::getSelectedComponents().last();
currentComponent->setIndexOfPropertyExplorerTab(1);
}
+ // add each selected selection nodes to the current selection
+ foreach (index, items) {
+ currentSelection->Union(selectionList.at(index.row()));
+ }
+
this->refresh();
- return;
+
}
-// -------------------- addDataArray --------------------
-void MeshComponent::addDataArray ( const QString& name, vtkSmartPointer< vtkDataArray > data ) {
- data->SetName ( name.toStdString().c_str() );
- dataList[name] = data;
+// -------------------- removeSelectedSelection --------------------
+void MeshComponent::removeSelectedSelections() {
+ // TODO : handle multiple selection
+ int index = selectionView->selectionModel()->currentIndex().row();
+
+ if (selectionView->selectionModel()->isRowSelected(index, QModelIndex()))
+ selectionModel->removeSelection(selectionList.at(index)->GetSelectionList()->GetName());
}
-// -------------------- removeDataArray --------------------
-void MeshComponent::removeDataArray ( const QString& name ) {
- dataList.remove ( name );
- bool refresh = false;
- if ( this->getPointSet()->GetPointData()->HasArray ( name.toStdString().c_str() ) ) {
- this->getPointSet()->GetPointData()->RemoveArray ( name.toStdString().c_str() );
- refresh = true;
+// -------------------- getDataArray --------------------
+vtkSmartPointer<vtkDataArray> MeshComponent::getDataArray(MeshDataModel::FieldType fieldType, const QString & arrayName) {
+ vtkSmartPointer< vtkFieldData > dataField;
+
+ switch (fieldType) {
+ case MeshDataModel::POINTS :
+ dataField = getPointSet()->GetPointData();
+ break;
+
+ case MeshDataModel::CELLS :
+ dataField = getPointSet()->GetCellData();
+ break;
+
+ case MeshDataModel::MESH :
+ dataField = getPointSet()->GetFieldData();
+ break;
+
+ default:
+ dataField = NULL;
+ break;
}
- if ( this->getPointSet()->GetCellData()->HasArray ( name.toStdString().c_str() ) ) {
- this->getPointSet()->GetCellData()->RemoveArray ( name.toStdString().c_str() );
- refresh = true;
+
+ return dataField->GetArray(arrayName.toStdString().c_str());
+}
+
+vtkSmartPointer<vtkDataArray> MeshComponent::getDataArray(MeshDataModel::FieldType fieldType, int index) {
+ vtkSmartPointer< vtkFieldData > dataField;
+
+ switch (fieldType) {
+ case MeshDataModel::POINTS :
+ dataField = getPointSet()->GetPointData();
+ break;
+
+ case MeshDataModel::CELLS :
+ dataField = getPointSet()->GetCellData();
+ break;
+
+ case MeshDataModel::MESH :
+ dataField = getPointSet()->GetFieldData();
+ break;
+
+ default:
+ dataField = NULL;
+ break;
}
- if ( refresh )
- dataModel->refresh();
+
+ return dataField->GetArray(index);
}
-// -------------------- linkDataToPoints --------------------
-void MeshComponent::linkDataToPoints ( const QString& name ) {
- this->getPointSet()->GetPointData()->AddArray ( dataList[name] );
- // set the new array as active
- switch ( dataList[name]->GetNumberOfComponents() ) {
- case 1 :
- getPointSet()->GetPointData()->SetActiveScalars ( name.toStdString().c_str() );
+// -------------------- addDataArray --------------------
+void MeshComponent::addDataArray(MeshDataModel::FieldType fieldType, const QString & name, vtkSmartPointer< vtkDataArray > data) {
+
+ // get the field data set attributes
+ vtkSmartPointer< vtkFieldData > dataField;
+
+ switch (fieldType) {
+ case MeshDataModel::POINTS :
+ dataField = getPointSet()->GetPointData();
break;
- case 3 :
- getPointSet()->GetPointData()->SetActiveVectors ( name.toStdString().c_str() );
+
+ case MeshDataModel::CELLS :
+ dataField = getPointSet()->GetCellData();
break;
- case 9 :
- getPointSet()->GetPointData()->SetActiveTensors ( name.toStdString().c_str() );
+
+ case MeshDataModel::MESH :
+ dataField = getPointSet()->GetFieldData();
break;
- default :
+
+ default:
+ dataField = NULL;
break;
}
- dataModel->refresh();
+
+ // attach the new data
+ data->SetName(name.toStdString().c_str());
+ dataField->AddArray(data);
+
+ // set the data as active
+ setActiveData(fieldType, name.toStdString().c_str());
}
-// -------------------- linkDataToCells --------------------
-void MeshComponent::linkDataToCells ( const QString& name ) {
- this->getPointSet()->GetCellData()->AddArray ( dataList[name] );
- // set the new array as active
- switch ( dataList[name]->GetNumberOfComponents() ) {
- case 1 :
- getPointSet()->GetCellData()->SetActiveScalars ( name.toStdString().c_str() );
+// -------------------- removeDataArray --------------------
+void MeshComponent::removeDataArray(MeshDataModel::FieldType fieldType, const QString & name) {
+ vtkSmartPointer< vtkFieldData > dataField;
+
+ switch (fieldType) {
+ case MeshDataModel::POINTS :
+ dataField = getPointSet()->GetPointData();
break;
- case 3 :
- getPointSet()->GetCellData()->SetActiveVectors ( name.toStdString().c_str() );
+
+ case MeshDataModel::CELLS :
+ dataField = getPointSet()->GetCellData();
break;
- case 9 :
- getPointSet()->GetCellData()->SetActiveTensors ( name.toStdString().c_str() );
+
+ case MeshDataModel::MESH :
+ dataField = getPointSet()->GetFieldData();
break;
- default :
+
+ default:
+ dataField = NULL;
break;
}
- dataModel->refresh();
+
+ if (dataField->HasArray(name.toStdString().c_str())) {
+ setActiveData(fieldType, NULL);
+ dataField->RemoveArray(name.toStdString().c_str());
+ this->removeProp(QString("data/" + MeshDataModel::getFieldNames()[fieldType] + "/" + name).toStdString().c_str());
+ }
+
}
// -------------------- addPointData --------------------
-void MeshComponent::addPointData ( const QString& name, int dataType, vtkSmartPointer< vtkDataArray > data ) {
- addDataArray ( name, data );
- linkDataToPoints ( name );
+void MeshComponent::addPointData(const QString & name, vtkSmartPointer< vtkDataArray > data) {
+ addDataArray(MeshDataModel::POINTS, name, data);
}
// -------------------- addCellData --------------------
-void MeshComponent::addCellData ( const QString& name, int dataType, vtkSmartPointer< vtkDataArray > data ) {
- addDataArray ( name, data );
- linkDataToCells ( name );
+void MeshComponent::addCellData(const QString & name, vtkSmartPointer< vtkDataArray > data) {
+ addDataArray(MeshDataModel::CELLS, name, data);
+}
+
+// -------------------- setActiveData --------------------
+void camitk::MeshComponent::setActiveData(camitk::MeshDataModel::FieldType fieldType, const char * name) {
+ vtkSmartPointer< vtkDataSetAttributes > dataAttr;
+ bool meshDataType = false;
+
+ if (fieldType == MeshDataModel::POINTS) {
+ dataAttr = getPointSet()->GetPointData();
+ } else {
+ if (fieldType == MeshDataModel::CELLS) {
+ dataAttr = getPointSet()->GetCellData();
+ } else {
+ meshDataType = true;
+ }
+ }
+
+ if (!meshDataType) {
+ // if name is NULL, remove all color scale
+ if (name == NULL) {
+ dataAttr->SetActiveScalars(NULL);
+ // remove all color bar
+ InteractiveViewer::get3DViewer()->setColorScaleTitle("");
+ InteractiveViewer::get3DViewer()->setColorScale(false);
+ refresh();
+ } else {
+ // set active scalar, vector or tensor
+ switch (dataAttr->GetArray(name)->GetNumberOfComponents()) {
+ case 1 : {
+ dataAttr->SetActiveScalars(name);
+
+ // show corresponding color bar
+ double range[2];
+ dataAttr->GetScalars()->GetRange(range); // range of the 1st component = unique component
+ dataAttr->Update();
+ //-- show the color scale in 3D
+ InteractiveViewer::get3DViewer()->setColorScale(true);
+ InteractiveViewer::get3DViewer()->setColorScaleTitle(name);
+ InteractiveViewer::get3DViewer()->setColorScaleMinMax(range[0], range[1]);
+ }
+ break;
+
+ case 3 :
+ // TODO display the prop (visibility)
+ dataAttr->SetActiveVectors(name);
+ break;
+
+ case 9 :
+ dataAttr->SetActiveTensors(name);
+ break;
+
+ default:
+ break;
+ }
+ }
+ }
+
+ // refresh the table
+ dataModel->refresh();
+
+}
+
+// -------------------- getDataProp --------------------
+vtkSmartPointer<vtkProp> MeshComponent::getDataProp(MeshDataModel::FieldType fieldType, const QString & arrayName) {
+ QString fieldName;
+
+ switch (fieldType) {
+ case MeshDataModel::POINTS :
+ fieldName = "points";
+ break;
+
+ case MeshDataModel::CELLS :
+ fieldName = "cells";
+ break;
+
+ case MeshDataModel::MESH :
+ fieldName = "mesh";
+ break;
+
+ default:
+ fieldName = "";
+ break;
+ }
+
+ QString dataName = ("data/" + fieldName + "/" + arrayName);
+
+ vtkSmartPointer<vtkProp> prop = getProp(dataName);
+
+ if (prop)
+ return prop;
+
+ vtkSmartPointer<vtkDataArray> array;
+
+ if (getPointSet()->GetPointData()->HasArray(arrayName.toStdString().c_str())) {
+ array = getPointSet()->GetPointData()->GetArray(arrayName.toStdString().c_str());
+
+ switch (array->GetNumberOfComponents()) {
+ case 3 : {
+ vtkSmartPointer<vtkHedgeHog> hedgeHog = vtkSmartPointer<vtkHedgeHog>::New();
+ vtkSmartPointer<vtkDataSetMapper> dataMapper = vtkSmartPointer< vtkDataSetMapper >::New();
+ vtkSmartPointer<vtkActor> dataActor = vtkSmartPointer< vtkActor >::New();
+
+ hedgeHog->SetInputConnection(myGeometry->getDataPort());
+ hedgeHog->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_POINTS, array->GetName());
+ dataMapper->SetInputConnection(hedgeHog->GetOutputPort());
+ dataActor->SetMapper(dataMapper);
+ dataActor->GetProperty()->SetColor(0, 1, 0);
+ dataActor->VisibilityOff();
+
+ addProp(dataName, dataActor);
+
+ return dataActor;
+ break;
+ }
+
+ case 9 : {
+ vtkSmartPointer<vtkTensorGlyph> tensorGlyph = vtkSmartPointer<vtkTensorGlyph>::New();
+ vtkSmartPointer<vtkDataSetMapper> dataMapper = vtkSmartPointer< vtkDataSetMapper >::New();
+ vtkSmartPointer<vtkActor> dataActor = vtkSmartPointer< vtkActor >::New();
+ vtkSmartPointer<vtkSphereSource> glyphSphere = vtkSmartPointer<vtkSphereSource>::New();
+
+ glyphSphere->SetRadius(myGeometry->getBoundingRadius() / 50.0);
+ tensorGlyph->SetInputConnection(myGeometry->getDataPort());
+ tensorGlyph->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_POINTS, array->GetName());
+ tensorGlyph->SetSourceConnection(glyphSphere->GetOutputPort());
+ tensorGlyph->SetColorModeToEigenvalues();
+ tensorGlyph->SetExtractEigenvalues(false);
+ tensorGlyph->SetScaling(1);
+ tensorGlyph->SetMaxScaleFactor(2);
+ tensorGlyph->SetClampScaling(1);
+ dataMapper->SetInputConnection(tensorGlyph->GetOutputPort());
+ dataActor->SetMapper(dataMapper);
+ dataActor->GetProperty()->SetColor(0, 1, 0);
+ dataActor->VisibilityOff();
+
+ addProp(dataName, dataActor);
+
+ return dataActor;
+ break;
+ }
+
+ default:
+ return NULL;
+ break;
+ }
+ }
+
+ if (getPointSet()->GetCellData()->HasArray(arrayName.toStdString().c_str())) {
+ array = getPointSet()->GetCellData()->GetArray(arrayName.toStdString().c_str());
+
+ switch (array->GetNumberOfComponents()) {
+ case 3 : {
+ vtkSmartPointer<vtkCellCenters> cellCentersFilter = vtkSmartPointer<vtkCellCenters>::New();
+ vtkSmartPointer<vtkHedgeHog> hedgeHog = vtkSmartPointer<vtkHedgeHog>::New();
+ vtkSmartPointer<vtkDataSetMapper> dataMapper = vtkSmartPointer< vtkDataSetMapper >::New();
+ vtkSmartPointer<vtkActor> dataActor = vtkSmartPointer< vtkActor >::New();
+
+ cellCentersFilter->SetInputConnection(myGeometry->getDataPort());
+ hedgeHog->SetInputConnection(cellCentersFilter->GetOutputPort());
+ hedgeHog->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, array->GetName());
+ dataMapper->SetInputConnection(hedgeHog->GetOutputPort());
+ dataActor->SetMapper(dataMapper);
+ dataActor->GetProperty()->SetColor(0, 1, 0);
+ dataActor->VisibilityOff();
+
+ addProp(dataName, dataActor);
+
+ return dataActor;
+ break;
+ }
+
+ case 9 : {
+ vtkSmartPointer<vtkCellCenters> cellCentersFilter = vtkSmartPointer<vtkCellCenters>::New();
+ vtkSmartPointer<vtkTensorGlyph> tensorGlyph = vtkSmartPointer<vtkTensorGlyph>::New();
+ vtkSmartPointer<vtkDataSetMapper > dataMapper = vtkSmartPointer< vtkDataSetMapper >::New();
+ vtkSmartPointer<vtkActor> dataActor = vtkSmartPointer< vtkActor >::New();
+ vtkSmartPointer<vtkSphereSource> glyphSphere = vtkSmartPointer<vtkSphereSource>::New();
+
+ cellCentersFilter->SetInputConnection(myGeometry->getDataPort());
+ glyphSphere->SetRadius(myGeometry->getBoundingRadius() / 50.0);
+ tensorGlyph->SetInputConnection(cellCentersFilter->GetOutputPort());
+ tensorGlyph->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, array->GetName());
+ tensorGlyph->SetSourceConnection(glyphSphere->GetOutputPort());
+ tensorGlyph->SetColorModeToEigenvalues();
+ tensorGlyph->SetExtractEigenvalues(false);
+ tensorGlyph->SetScaling(1);
+ tensorGlyph->SetMaxScaleFactor(2);
+ tensorGlyph->SetClampScaling(1);
+ dataMapper->SetInputConnection(tensorGlyph->GetOutputPort());
+ dataActor->SetMapper(dataMapper);
+ dataActor->GetProperty()->SetColor(0, 1, 0);
+ dataActor->VisibilityOff();
+
+ addProp(dataName, dataActor);
+
+ return dataActor;
+ break;
+ }
+
+ default:
+ return NULL;
+ break;
+ }
+ }
+
+ return NULL;
+}
+
+
+// -------------------- removeSelectedData --------------------
+void MeshComponent::removeSelectedData() {
+ // TODO : handle multiple selection and cell/mesh data array deletion
+ int index = dataView->selectionModel()->currentIndex().row();
+
+ if (dataView->selectionModel()->isRowSelected(index, QModelIndex())) {
+ vtkSmartPointer<vtkDataArray> arrayToDelete = getDataArray(MeshDataModel::POINTS, index);
+
+ if (!arrayToDelete)
+ CAMITK_WARNING("MeshComponent", "removeSelectedData", "Removal of data #" << index << " not implemented yet")
+ else
+ removeDataArray(MeshDataModel::POINTS, arrayToDelete->GetName());
+ }
}
// -------------------- getNumberOfPropertyWidget --------------------
@@ -425,20 +847,52 @@ unsigned int MeshComponent::getNumberOfPropertyWidget() {
}
// -------------------- getPropertyWidgetAt --------------------
-QWidget* MeshComponent::getPropertyWidgetAt ( unsigned int i, QWidget* parent ) {
- switch ( i ) {
+QWidget * MeshComponent::getPropertyWidgetAt(unsigned int i, QWidget * parent) {
+ switch (i) {
case 0 :
return this->getPropertyWidget();
break;
+
case 1 :
- return selectionView;
+ return selectionWidget;
break;
+
case 2 :
- return dataView;
+ return dataWidget;
break;
- default :
+
+ default:
return NULL;
}
}
+// -------------------- getIcon --------------------
+QPixmap MeshComponent::getIcon() {
+ return QPixmap(":/cell");
}
+
+
+
+
+
+
+
+
+
+/// TODO CAMITK_DEPRECATED.
+/// This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+
+// -------------------- getSelectionList --------------------
+const QMap< QString, vtkSmartPointer< vtkSelectionNode > > & MeshComponent::getSelectionList() const {
+ return selectionMap;
+}
+
+}
+
+
+
+
+
+
+
+
diff --git a/sdk/libraries/core/component/mesh/MeshComponent.h b/sdk/libraries/core/component/mesh/MeshComponent.h
index 155a318..515571c 100644
--- a/sdk/libraries/core/component/mesh/MeshComponent.h
+++ b/sdk/libraries/core/component/mesh/MeshComponent.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,13 +29,16 @@
#include "Component.h"
#include "Geometry.h"
#include "MeshDataModel.h"
+#include "MeshDataView.h"
#include "MeshSelectionModel.h"
+#include "MeshSelectionView.h"
class vtkPointSet;
class vtkSelection;
class vtkSelectionNode;
class QTableView;
+class QComboBox;
namespace camitk {
@@ -54,7 +57,7 @@ public:
*
* Please consider using MeshComponent(vtkSmartPointer<vtkPointSet> , const QString &)
*/
- MeshComponent( const QString & file ) throw( AbortException );
+ MeshComponent ( const QString & file ) throw ( AbortException );
/** Creates a top-level MeshComponent from a vtkPointSet (and instanciate its 3D representation).
*
@@ -65,7 +68,7 @@ public:
* @param aPointSet point set of the new MeshComponent
* @param name name to be given to the Component
*/
- MeshComponent( vtkSmartPointer<vtkPointSet> aPointSet, const QString &name );
+ MeshComponent ( vtkSmartPointer<vtkPointSet> aPointSet, const QString &name );
/** Creates a MeshComponent as a sub component of another Component using a vtkPointSet (and instanciate its 3D representation).
*
@@ -75,16 +78,16 @@ public:
* @param aPointSet point set of the new MeshComponent
* @param name name to be given to the new MeshComponent
*/
- MeshComponent( Component *parentComponent, vtkSmartPointer<vtkPointSet> aPointSet, const QString &name );
+ MeshComponent ( Component *parentComponent, vtkSmartPointer<vtkPointSet> aPointSet, const QString &name );
/// Destructor
virtual ~MeshComponent();
/// reimplemented to save the last pick point id
- void pointPicked( vtkIdType pointId, bool );
+ void pointPicked ( vtkIdType pointId, bool );
/// reimplemented to save the last pick point id
- void cellPicked( vtkIdType cellId, bool );
+ void cellPicked ( vtkIdType cellId, bool );
/// get the last pick point id, @return -1 if no point where picked
vtkIdType getPickedPointId();
@@ -93,53 +96,125 @@ public:
vtkIdType getPickedCellId();
/// update property: no specific properties to manage, this is needed to avoid console warnings.
- void updateProperty( QString , QVariant ) {};
+ void updateProperty ( QString , QVariant ) {}
/// there is more than one property widgets (to view as tabs in the property explorer)
virtual unsigned int getNumberOfPropertyWidget();
/// the proprety widgets are: default property widget, selection view and data view
- virtual QWidget * getPropertyWidgetAt( unsigned int i, QWidget* parent = 0 );
+ virtual QWidget * getPropertyWidgetAt ( unsigned int i, QWidget* parent = 0 );
+
+ /// Get the pixmap that will be displayed for this node
+ virtual QPixmap getIcon();
/**
* @name Selection management
* @see http://www.kitware.com/media/html/SelectionsInVTK.html
+ *
+ * The selection are stored using a list of vtkSelectionNode.
+ * Since this list is managed through the a Qt model/view,
+ * please do not modify directly the vtkSelectionNode and use
+ * the methods dedicated to selections.
+ *
* @{
*/
+
/**
- * Add a selection.
+ * @brief Get the selection list.
+ *
+ * The selection list contains vtkSelectionNode.
+ *
+ * \note TODO This method should be const, in case a subcomponent needs to add extra/specific behavior.
+ * And then:
+ * - To loop over selections, use getNumberOfSelections() and getSelectionAt().
+ * - To remove selection, use removeSelection().
+ * - To add selections, use addSelection() or addToSelectedSelection().
+ *
+ * @return the selection list
*/
- void addSelection( const QString& name, int fieldType, int contentType );
+ QList< vtkSmartPointer<vtkSelectionNode> >& getSelections();
/**
- * Remove a selection.
+ * @brief Get the number of selections.
+ *
+ * @return the number of selections.
*/
- void removeSelection( const QString& name );
+ unsigned int getNumberOfSelections() const;
/**
- * Get the number of selection
+ * @brief Get active selections
+ *
+ * @return active selections
*/
- int getNumberOfSelections() const;
+ vtkSmartPointer<vtkSelection> getActiveSelection() const;
/**
- * Get a selection.
+ * @brief Get a selection from its name.
+ *
+ * @TODO mettre en const pour pas de modeif externe
+ *
+ * @param name name of the selection
+ * @return the selection node
*/
- vtkSmartPointer<vtkSelectionNode> getSelection( const QString& name ) const;
+ vtkSmartPointer<vtkSelectionNode> getSelection ( const QString& name ) const;
/**
- * Get selection
+ * @brief Get a selection from its index in the list.
+ *
+ * @TODO mettre en const pour pas de modeif externe
+ *
+ * @param index index of the selection
+ * @return the selection node
*/
- vtkSmartPointer<vtkSelectionNode> getSelectionAt( int i ) const;
+ vtkSmartPointer<vtkSelectionNode> getSelectionAt ( unsigned int index ) const;
/**
- * Get the selection list
+ * @brief Get the selection index in the list from its name.
+ *
+ * @param name name of the selection
+ * @return the selection index or -1 if there is no selection of that name
*/
- const QMap< QString, vtkSmartPointer<vtkSelectionNode> >& getSelectionList() const;
+ int getSelectionIndex ( const QString& name ) const;
/**
- * Add to a selection.
+ * @brief Add a selection.
+ *
+ * If the name of the selection already exists, the data of the existing
+ * selection are updated according to the SelectionPolicy flag.
+ *
+ * @param name name of the selection
+ * @param fieldType field type of the selection (one of vtkSelectionNode::SelectionField)
+ * @param contentType content type (one of vtkSelectionNode::SelectionContent)
+ * @param array array of the selection
+ * @param policy policy to update the existing selection
+ * @return the index of the added selection in the selection list
*/
- void addToSelection( const QString& name, vtkSmartPointer<vtkAbstractArray> array );
+ virtual int addSelection ( const QString& name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy = MeshSelectionModel::REPLACE );
+
+ /**
+ * @brief Add a selection to the currently selected selection.
+ *
+ * If there is no selected selection, one is created with the name "Picked Selection".
+ *
+ * @param fieldType field type of the selection (one of vtkSelectionNode::SelectionField)
+ * @param contentType content type (one of vtkSelectionNode::SelectionContent)
+ * @param array array of the selection
+ * @param policy policy to updated the selection selection
+ * @return the index of the selected selection in the selection list
+ */
+ virtual int addToSelectedSelection ( int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy = MeshSelectionModel::REPLACE );
+
+ ///@cond
+ /// TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+ /// This method was only available in CamiTK 3.4.0
+ /// Please use the getAllSelections method instead.
+ /**
+ * Get the selection list
+ */
+ const QMap< QString, vtkSmartPointer<vtkSelectionNode> >& getSelectionList() const;
+ ///@endcond
+
+
/**
* @}
*/
@@ -150,34 +225,81 @@ public:
*/
/**
- * Add data array
+ * @brief Get the data array of specified field type and name.
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param arrayName array name
+ *
+ * @return data array
*/
- void addDataArray( const QString& name, vtkSmartPointer<vtkDataArray> data );
+ vtkSmartPointer<vtkDataArray> getDataArray(MeshDataModel::FieldType fieldType, const QString& arrayName);
/**
- * Add data array
+ * @brief Get the data array of specified field type and index.
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param index index
+ *
+ * @return data array
*/
- void removeDataArray( const QString& name );
+ vtkSmartPointer<vtkDataArray> getDataArray(MeshDataModel::FieldType fieldType, int index);
/**
- * Link data array to points
+ * @brief Add a data array.
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param arrayName array name
+ * @param data data array
*/
- void linkDataToPoints( const QString& name );
+ void addDataArray ( MeshDataModel::FieldType fieldType, const QString& name, vtkSmartPointer<vtkDataArray> data );
+
/**
- * Link data array to cells
+ * @brief Remove a data array.
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param arrayName array name
+ */
+ void removeDataArray ( MeshDataModel::FieldType fieldType, const QString& name );
+
+ /**
+ * @brief Add a data array linked to the points.
+ *
+ * @param name name
+ * @param data data array
*/
- void linkDataToCells( const QString& name );
+ void addPointData ( const QString& name, vtkSmartPointer<vtkDataArray> data );
/**
- * Add point data.
+ * @brief Add a data array linked to the cells.
+ *
+ * @param name name
+ * @param data data array
*/
- void addPointData( const QString& name, int dataType, vtkSmartPointer<vtkDataArray> data );
+ void addCellData ( const QString& name, vtkSmartPointer<vtkDataArray> data );
/**
- * Add cell data.
+ * @brief Get the prop associed to the data.
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param name data array name
+ *
+ * @return prop
*/
- void addCellData( const QString& name, int dataType, vtkSmartPointer<vtkDataArray> data );
+ vtkSmartPointer<vtkProp> getDataProp ( MeshDataModel::FieldType fieldType, const QString& name );
+
+ /** Set the given named scalar data array corresponding to the given field type as the currently active data.
+ *
+ * This will set the current active data. If the data has one dimension (scalar),
+ * it will also show the corresponding values using the
+ * default color scale and display the color scale in the 3D viewer.
+ *
+ * \note if fieldType is POINTS and name is equal to NULL, the color scale is removed from the 3D viewer
+ *
+ * @param fieldType field type (@see MeshDataModel::FieldType)
+ * @param name data array name
+ */
+ void setActiveData(MeshDataModel::FieldType fieldType, const char *name);
/// get the current data view model (model as the M in Qt MVC design pattern)
MeshDataModel* getDataModel() {
@@ -188,21 +310,34 @@ public:
*/
protected:
+
/// build the instance of Geometry from the given vtkPointSet
- virtual void initRepresentation( vtkSmartPointer<vtkPointSet> );
+ virtual void initRepresentation ( vtkSmartPointer<vtkPointSet> );
+
+ /// initialize selections
+ virtual void initSelection();
+
+ /// initialize data
+ virtual void initData();
/// create and initialize dynamic properties
virtual void initDynamicProperties();
-protected slots :
+protected slots:
/// called when the selection is modified
- void changeSelectedSelection( const QModelIndex& current, const QModelIndex& previous );
+ void changeSelectedSelection ( const QItemSelection &selected, const QItemSelection &deselected );
+
+ /// remove the selected selection
+ void removeSelectedSelections();
+
+ /// remove the selected selection
+ void removeSelectedData();
private:
/// the concrete building of the 3D objects (Slice/Geometry): none in this case, everything is done by initRepresentation(vtkPointSet)
- virtual void initRepresentation() {};
+ virtual void initRepresentation() {}
/// initialisation of the mesh component members
void init();
@@ -216,24 +351,53 @@ private:
/// manages current selection using vtk
vtkSmartPointer<vtkSelection> currentSelection;
- /// maps a name with a type of selection
- QMap< QString, vtkSmartPointer<vtkSelectionNode> > selectionList;
+ /// list of selections
+ QList< vtkSmartPointer<vtkSelectionNode> > selectionList;
- /// maps a name with a data array
- QMap< QString, vtkSmartPointer<vtkDataArray> > dataList;
+ ///@cond
+ /// TODO CAMITK_DEPRECATED. This section list all the methods marked as deprecated. They are to be removed in CamiTK 4.0
+ /// When the method getSelectionList is removed (CamiTK 4.0), please remove this attribute.
+ ///
+ /// map of selections
+ QMap< QString, vtkSmartPointer<vtkSelectionNode> > selectionMap;
+ ///@endcond
+
+ /// selection model (model as the M in Qt MVC design pattern)
+ MeshSelectionModel* selectionModel;
/// selection GUI View (view as the V in Qt MVC design pattern)
- QTableView* selectionView;
+ MeshSelectionView* selectionView;
- /// data GUI View (view as the V in Qt MVC design pattern)
- QTableView* dataView;
+ /// selection widget
+ QWidget* selectionWidget;
- /// selection model (model as the M in Qt MVC design pattern)
- MeshSelectionModel* selectionModel;
+ /// action to remove selections
+ QAction* removeSelections;
+
+ /// action to merge selections
+ QAction* mergeSelection;
+
+ /// action to inspect selection
+ QAction* inspectSelection;
+
+ /// combo box to select the selection insertion policy
+ QComboBox* policyBox;
/// data model (model as the M in Qt MVC design pattern)
MeshDataModel* dataModel;
+ /// data GUI View (view as the V in Qt MVC design pattern)
+ MeshDataView* dataView;
+
+ /// selection widget
+ QWidget* dataWidget;
+
+ /// action to remove data
+ QAction* removeData;
+
+ /// action to inspect data
+ QAction* inspectData;
+
};
}
diff --git a/sdk/libraries/core/component/mesh/MeshComponentExtension.cpp b/sdk/libraries/core/component/mesh/MeshComponentExtension.cpp
index 9a35afc..d229b42 100644
--- a/sdk/libraries/core/component/mesh/MeshComponentExtension.cpp
+++ b/sdk/libraries/core/component/mesh/MeshComponentExtension.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -45,7 +45,7 @@ QString MeshComponentExtension::getName() const {
// --------------- getDescription -------------------
QString MeshComponentExtension::getDescription() const {
- return tr("Interface all mesh manager plugins");
+ return tr ( "Interface all mesh manager plugins" );
}
diff --git a/sdk/libraries/core/component/mesh/MeshComponentExtension.h b/sdk/libraries/core/component/mesh/MeshComponentExtension.h
index bab5734..d035a97 100644
--- a/sdk/libraries/core/component/mesh/MeshComponentExtension.h
+++ b/sdk/libraries/core/component/mesh/MeshComponentExtension.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -61,7 +61,7 @@ public:
/// get a new instance from data stored in a file (this is the most important method to redefine in your subclass)
virtual Component * open
- (const QString &) throw (AbortException) = 0;
+ ( const QString & ) throw ( AbortException ) = 0;
protected:
/// Constructor protected because the class is virtual
diff --git a/sdk/libraries/core/component/mesh/MeshDataModel.cpp b/sdk/libraries/core/component/mesh/MeshDataModel.cpp
index af46335..6dd855a 100644
--- a/sdk/libraries/core/component/mesh/MeshDataModel.cpp
+++ b/sdk/libraries/core/component/mesh/MeshDataModel.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,112 +26,341 @@
#include "MeshDataModel.h"
#include "MeshComponent.h"
+
#include <vtkCellData.h>
#include <vtkPointData.h>
namespace camitk {
-MeshDataModel::MeshDataModel ( MeshComponent* meshComp ) :
- QAbstractTableModel ( meshComp ), meshComponent ( meshComp ) {
-
+// -------------------- constructor --------------------
+MeshDataModel::MeshDataModel(MeshComponent * meshComp) :
+ QAbstractTableModel(meshComp), meshComponent(meshComp) {
+ // get ready to reset table
+ beginResetModel();
}
-int MeshDataModel::rowCount ( const QModelIndex& parent ) const {
- if ( !meshComponent || !(meshComponent->getPointSet()) )
+// -------------------- rowCount --------------------
+int MeshDataModel::rowCount(const QModelIndex & parent) const {
+ if (!meshComponent || !(meshComponent->getPointSet())) {
return 0;
+ }
return meshComponent->getPointSet()->GetCellData()->GetNumberOfArrays() + meshComponent->getPointSet()->GetPointData()->GetNumberOfArrays();
}
-int MeshDataModel::columnCount ( const QModelIndex& parent ) const {
+// -------------------- columnCount --------------------
+int MeshDataModel::columnCount(const QModelIndex & parent) const {
return 3;
}
-QVariant MeshDataModel::data ( const QModelIndex& index, int role ) const {
- if ( !meshComponent || !(meshComponent->getPointSet()) )
+// -------------------- getFieldTypeOfRow --------------------
+MeshDataModel::FieldType MeshDataModel::getFieldTypeOfRow(const int row, int *dataIndex) const {
+ int nbPointData = meshComponent->getPointSet()->GetPointData()->GetNumberOfArrays();
+ int nbCellData = meshComponent->getPointSet()->GetCellData()->GetNumberOfArrays();
+
+ if (row < nbPointData) {
+ *dataIndex = row;
+ return POINTS;
+ } else if (row < (nbPointData + nbCellData)) {
+ *dataIndex = row - nbPointData;
+ return CELLS;
+ } else {
+ *dataIndex = row - (nbPointData + nbCellData);
+ return MESH;
+ }
+}
+
+// -------------------- data --------------------
+QVariant MeshDataModel::data(const QModelIndex & index, int role) const {
+ if (!meshComponent || !(meshComponent->getPointSet())) {
return QVariant();
+ }
- int row = index.row();
+ const int row = index.row();
int col = index.column();
- int nbPointData = meshComponent->getPointSet()->GetPointData()->GetNumberOfArrays();
- int nbCellData = meshComponent->getPointSet()->GetCellData()->GetNumberOfArrays();
- vtkDataSetAttributes* data;
+ vtkSmartPointer<vtkFieldData> data;
int dataNum;
QString field;
+ QString type;
+ FieldType fieldType = getFieldTypeOfRow(row,&dataNum);
- if ( row < nbPointData ) {
+ switch (fieldType) {
+ case POINTS:
data = meshComponent->getPointSet()->GetPointData();
- dataNum = row;
- field = "point";
- } else {
+ field = "points";
+ break;
+
+ case CELLS:
data = meshComponent->getPointSet()->GetCellData();
- dataNum = row - nbPointData;
- field = "cell";
+ field = "cells";
+ break;
+ case MESH:
+ default:
+ data = meshComponent->getPointSet()->GetFieldData();
+ field = "mesh";
+ break;
}
- switch ( role ) {
+ switch (data->GetArray(dataNum)->GetNumberOfComponents()) {
+ case 1:
+ type = QString("scalars");
+ break;
+
+ case 3 :
+ type = QString("vectors");
+ break;
+
+ case 9 :
+ type = QString("tensors");
+ break;
+
+ default:
+ type = QString::number(data->GetArray(dataNum)->GetNumberOfComponents());
+ break;
+ }
+
+ switch (role) {
case Qt::DisplayRole:
- switch ( col ) {
+ switch (col) {
case 0 :
- return QString ( data->GetArray ( dataNum )->GetName() );
+ return QString(data->GetArray(dataNum)->GetName());
break;
+
case 1 :
return field;
break;
- case 2 : {
- switch ( data->GetArray ( dataNum )->GetNumberOfComponents() ) {
- case 1:
- return QString ( "scalars" );
- break;
- case 3 :
- return QString ( "vectors" );
- break;
- case 9 :
- return QString ( "tensors" );
- break;
- default :
- return QString::number ( data->GetArray ( dataNum )->GetNumberOfComponents() );
- break;
- }
+
+ case 2 :
+ return type;
break;
- }
- default :
+
+ default:
return QVariant();
break;
}
+
break;
- default :
+
+ case Qt::CheckStateRole:
+
+ if ((col == 0) && field != "mesh") {
+ switch (data->GetArray(dataNum)->GetNumberOfComponents()) {
+ case 1: {
+ vtkSmartPointer<vtkDataSetAttributes> dataSetAttr = vtkDataSetAttributes::SafeDownCast(data);
+
+ if (dataSetAttr && dataSetAttr->GetScalars() && dataSetAttr->GetArray(dataNum) && QString(dataSetAttr->GetScalars()->GetName()) == QString(dataSetAttr->GetArray(dataNum)->GetName())) {
+ return Qt::Checked;
+ } else {
+ return Qt::Unchecked;
+ }
+ }
+ break;
+
+ case 3:
+ case 9: {
+ vtkSmartPointer<vtkProp> prop = meshComponent->getDataProp(fieldType, data->GetArray(dataNum)->GetName());
+
+ if (prop) {
+ if (prop->GetVisibility()) {
+ return Qt::Checked;
+ } else {
+ return Qt::Unchecked;
+ }
+ }
+ }
+ break;
+
+ default:
+ break;
+ }
+ }
+
+ break;
+
+ case Qt::DecorationRole : {
+ if (col == 1) {
+ if (field == "points") {
+ return QIcon(":/points");
+ } else if (field == "cells") {
+ return QIcon(":/cell");
+ } else {
+ return QVariant();
+ }
+ } else if (col == 2) {
+ if (type == "scalars") {
+ return QIcon(":/scalars");
+ } else if (type == "vectors") {
+ return QIcon(":/vectors");
+ } else {
+ return QVariant();
+ }
+ }
+
return QVariant();
break;
}
+
+ case Qt::BackgroundRole : {
+ //data->GetScalars()->GetName();
+
+ break;
+ }
+
+ default:
+ return QVariant();
+ break;
+ }
+
return QVariant();
}
-QVariant MeshDataModel::headerData ( int section, Qt::Orientation orientation, int role ) const {
- if ( role == Qt::DisplayRole ) {
- if ( orientation == Qt::Horizontal ) {
- switch ( section ) {
+// -------------------- setData --------------------
+bool MeshDataModel::setData(const QModelIndex & index, const QVariant & value, int role) {
+
+ if (role == Qt::CheckStateRole && index.column() == 0) {
+ int row = index.row();
+ vtkDataSetAttributes * data;
+ vtkProp * prop;
+ int dataNum;
+ FieldType fieldType = getFieldTypeOfRow(row,&dataNum);
+
+ switch (fieldType) {
+ case POINTS:
+ data = meshComponent->getPointSet()->GetPointData();
+ prop = meshComponent->getDataProp(POINTS, data->GetArray(dataNum)->GetName());
+ break;
+
+ case CELLS:
+ data = meshComponent->getPointSet()->GetCellData();
+ prop = meshComponent->getDataProp(CELLS, data->GetArray(dataNum)->GetName());
+ break;
+
+ default:
+ // nothing to do if this is a MESH data
+ return false;
+ }
+
+ // Some data do not have an additional vtkProp (e.g. scalars are represented directly as point data colors)
+ if (!prop) {
+ if (data->GetArray(dataNum)->GetNumberOfComponents() == 1) {
+ if (value == Qt::Checked) {
+ vtkSmartPointer<vtkDataSetAttributes> dataSetAttr = vtkDataSetAttributes::SafeDownCast(data);
+ // if this is a scalar value, set it to active (to display the colors on the cells/points)
+ meshComponent->setActiveData(fieldType, dataSetAttr->GetArray(dataNum)->GetName());
+ } else {
+ meshComponent->setActiveData(fieldType, NULL);
+ }
+ // nothing to if the button is not checked: the unactive scalars are going to be refreshed in data(..) method
+ } else {
+ // not managed
+ return false;
+ }
+ } else {
+ if (value == Qt::Checked) {
+ prop->VisibilityOn();
+ } else {
+ prop->VisibilityOff();
+ }
+ }
+
+ meshComponent->refresh();
+ return true;
+ }
+
+ return false;
+}
+
+Qt::ItemFlags MeshDataModel::flags(const QModelIndex & index) const {
+ if (index.column() == 0) {
+ return Qt::ItemIsSelectable | /* Qt::ItemIsEditable | */ Qt::ItemIsEnabled | Qt::ItemIsUserCheckable;
+ } else {
+ return Qt::ItemIsSelectable | Qt::ItemIsEnabled ;
+ }
+}
+
+
+QVariant MeshDataModel::headerData(int section, Qt::Orientation orientation, int role) const {
+ if (role == Qt::DisplayRole) {
+ if (orientation == Qt::Horizontal) {
+ switch (section) {
case 0:
- return QString ( "Name" );
+ return QString("Name");
break;
+
case 1:
- return QString ( "Field" );
+ return QString("Field");
break;
+
case 2:
- return QString ( "Type" );
+ return QString("Type");
break;
+
default:
return QVariant();
break;
}
}
}
+
return QVariant();
}
void MeshDataModel::refresh() {
- reset();
+ endResetModel();
}
-}
\ No newline at end of file
+const QMap< int, QString > & MeshDataModel::getFieldNames() {
+ static QMap<int, QString> fieldNames = initFieldNames();
+
+ return fieldNames;
+}
+
+const QMap< int, QString > & MeshDataModel::getDataNames() {
+ static QMap<int, QString> dataNames = initDataNames();
+
+ return dataNames;
+}
+
+QMap< int, QString > MeshDataModel::initFieldNames() {
+ QMap< int, QString > fieldNames;
+ fieldNames[MeshDataModel::POINTS] = "points";
+ fieldNames[MeshDataModel::CELLS] = "cells";
+ fieldNames[MeshDataModel::CELLS] = "mesh";
+
+ return fieldNames;
+}
+
+QMap< int, QString > MeshDataModel::initDataNames() {
+ QMap< int, QString > dataNames;
+ dataNames[MeshDataModel::SCALARS] = "scalars";
+ dataNames[MeshDataModel::VECTORS] = "vectors";
+ dataNames[MeshDataModel::TENSORS] = "tensors";
+ dataNames[MeshDataModel::OTHERS] = "";
+
+ return dataNames;
+}
+
+MeshDataFilterModel::MeshDataFilterModel(int fieldFilter, int dataFilter, QObject * parent) :
+ QSortFilterProxyModel(parent),
+ fieldTypeFilter(fieldFilter),
+ dataTypeFilter(dataFilter) {
+}
+
+void MeshDataFilterModel::setFieldTypeFilter(int fieldFilter) {
+ fieldTypeFilter = fieldFilter;
+}
+
+void MeshDataFilterModel::setDataTypeFilter(int dataFilter) {
+ dataTypeFilter = dataFilter;
+}
+
+bool MeshDataFilterModel::filterAcceptsRow(int sourceRow, const QModelIndex & sourceParent) const {
+ QModelIndex fieldIndex = sourceModel()->index(sourceRow, 1, sourceParent);
+ QModelIndex typeIndex = sourceModel()->index(sourceRow, 2, sourceParent);
+
+ return (MeshDataModel::getFieldNames().key(sourceModel()->data(fieldIndex).toString(), 0) & fieldTypeFilter) &&
+ (MeshDataModel::getDataNames().key(sourceModel()->data(typeIndex).toString(), 0) & dataTypeFilter);
+}
+
+}
diff --git a/sdk/libraries/core/component/mesh/MeshDataModel.h b/sdk/libraries/core/component/mesh/MeshDataModel.h
index 5a9f7d1..d4874d5 100644
--- a/sdk/libraries/core/component/mesh/MeshDataModel.h
+++ b/sdk/libraries/core/component/mesh/MeshDataModel.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -27,6 +27,7 @@
#define MESH_DATA_MODEL_H
#include <QAbstractTableModel>
+#include <QSortFilterProxyModel>
namespace camitk {
@@ -42,6 +43,21 @@ class MeshDataModel : public QAbstractTableModel {
public :
+ /// @enum FieldType Data fields can be applied to one of this
+ enum FieldType {
+ POINTS = 1, ///< data are attached to point
+ CELLS = 2, ///< data are attached to cells
+ MESH = 4 ///< data are attached to the whole mesh
+ };
+
+ /// @enum DataType Data fields can have different dimensions
+ enum DataType {
+ SCALARS = 1, ///< 1D (scalar value)
+ VECTORS = 2, ///< 3D (3D vector)
+ TENSORS = 4, ///< 9D (3x3 matrix)
+ OTHERS = 8 ///< other dimensions (warning: nothing special are managed by this class, no specific interaction)
+ };
+
/**
* @brief Constructor
*/
@@ -58,7 +74,7 @@ public :
int columnCount ( const QModelIndex &parent = QModelIndex() ) const;
/**
- * @brief Model data
+ * @brief Model data, called when the view is refreshing visualization
*/
QVariant data ( const QModelIndex &index, int role = Qt::DisplayRole ) const;
@@ -68,16 +84,67 @@ public :
QVariant headerData ( int section, Qt::Orientation orientation, int role = Qt::DisplayRole ) const;
/**
+ * @brief Edit data, called when the data are modified by the user (view)
+ */
+ bool setData ( const QModelIndex &index, const QVariant &value, int role );
+
+ /// Returns if a given model index is editable, checkable....
+ /// @see QAbstractTableModel
+ Qt::ItemFlags flags ( const QModelIndex &index ) const;
+
+ /// static method that returns the FieldType enum as a QString
+ static const QMap< int, QString >& getFieldNames();
+
+ /// static method that returns the DataType enum as a QString
+ static const QMap< int, QString >& getDataNames();
+
+ /**
* @brief Refresh the model
*/
void refresh();
private :
- MeshComponent* meshComponent; /// The component where the data are stored
+ /// The component where the data are stored
+ MeshComponent* meshComponent;
+
+ /// initialize FieldType QString map
+ static QMap< int, QString > initFieldNames();
+
+ /// initialize DataType QString map
+ static QMap< int, QString > initDataNames();
+
+ /// determine the current field type of the item depending on the row index, compute the index of the data in its field category
+ FieldType getFieldTypeOfRow(const int, int *dataIndex) const;
+
+};
+
+class MeshDataFilterModel : public QSortFilterProxyModel {
+
+ Q_OBJECT
+
+public :
+
+ MeshDataFilterModel(int fieldFilter = MeshDataModel::POINTS | MeshDataModel::CELLS | MeshDataModel::MESH,
+ int dataFilter = MeshDataModel::SCALARS | MeshDataModel::VECTORS | MeshDataModel::TENSORS | MeshDataModel::OTHERS,
+ QObject* parent = NULL);
+
+ void setFieldTypeFilter(int fieldFilter);
+
+ void setDataTypeFilter(int dataFilter);
+
+protected :
+
+ bool filterAcceptsRow(int sourceRow, const QModelIndex &sourceParent) const;
+
+private :
+
+ int fieldTypeFilter;
+
+ int dataTypeFilter;
};
}
-#endif
\ No newline at end of file
+#endif
diff --git a/sdk/libraries/core/component/mesh/MeshDataView.cpp b/sdk/libraries/core/component/mesh/MeshDataView.cpp
new file mode 100644
index 0000000..219b93f
--- /dev/null
+++ b/sdk/libraries/core/component/mesh/MeshDataView.cpp
@@ -0,0 +1,39 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "MeshDataView.h"
+
+using namespace camitk;
+
+MeshDataView::MeshDataView ( QWidget* parent ) : QTableView ( parent ) {
+
+}
+
+void MeshDataView::mousePressEvent ( QMouseEvent* event ) {
+ QModelIndex item = indexAt ( event->pos() );
+ if ( !item.isValid() )
+ this->selectionModel()->clearSelection();
+ QTableView::mousePressEvent ( event );
+}
diff --git a/sdk/libraries/core/component/mesh/MeshDataView.h b/sdk/libraries/core/component/mesh/MeshDataView.h
new file mode 100644
index 0000000..92703c9
--- /dev/null
+++ b/sdk/libraries/core/component/mesh/MeshDataView.h
@@ -0,0 +1,54 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef MESH_DATA_VIEW_H
+#define MESH_DATA_VIEW_H
+
+#include <QTableView>
+#include <QMouseEvent>
+
+namespace camitk {
+
+class MeshComponent;
+
+/**
+ * Qt view for mesh selection
+ * This class use the Qt model/view design.
+ */
+class MeshDataView : public QTableView {
+
+public :
+
+ MeshDataView ( QWidget* parent = 0 );
+
+protected :
+
+ void mousePressEvent ( QMouseEvent * event );
+
+};
+
+}
+
+#endif
diff --git a/sdk/libraries/core/component/mesh/MeshSelectionModel.cpp b/sdk/libraries/core/component/mesh/MeshSelectionModel.cpp
index 2f1c64a..c011041 100644
--- a/sdk/libraries/core/component/mesh/MeshSelectionModel.cpp
+++ b/sdk/libraries/core/component/mesh/MeshSelectionModel.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -26,13 +26,21 @@
#include "MeshDataModel.h"
#include "MeshComponent.h"
+#include <algorithm>
+
#include <vtkSelection.h>
#include <vtkSelectionNode.h>
+#include <vtkAbstractArray.h>
+#include <vtkExtractSelection.h>
+#include <vtkConvertSelection.h>
+#include <vtkIdTypeArray.h>
+
+#include <Log.h>
namespace camitk {
MeshSelectionModel::MeshSelectionModel ( MeshComponent* const meshComp ) :
- QAbstractTableModel ( meshComp ), meshComponent(meshComp) {
+ QAbstractTableModel ( meshComp ), meshComponent ( meshComp ) {
fieldName[vtkSelectionNode::POINT] = QString ( "Points" );
fieldName[vtkSelectionNode::CELL] = QString ( "Cells" );
@@ -42,7 +50,7 @@ MeshSelectionModel::MeshSelectionModel ( MeshComponent* const meshComp ) :
int MeshSelectionModel::rowCount ( const QModelIndex& parent ) const {
if ( !meshComponent )
return 0;
- return meshComponent->getNumberOfSelections();
+ return meshComponent->getSelections().size();
}
int MeshSelectionModel::columnCount ( const QModelIndex& parent ) const {
@@ -56,21 +64,26 @@ QVariant MeshSelectionModel::data ( const QModelIndex& index, int role ) const {
int row = index.row();
int col = index.column();
+ vtkSmartPointer< vtkSelectionNode > selNode = meshComponent->getSelections().at ( row );
+
switch ( role ) {
- case Qt::DisplayRole:
+ case Qt::DisplayRole : {
switch ( col ) {
case 0 :
- return QString ( meshComponent->getSelectionList().keys().at( row ) );
+ if ( selNode->GetSelectionList() )
+ return QString ( selNode->GetSelectionList()->GetName() );
+ else
+ return QString ( "Unknown" );
break;
case 1 :
- return QString ( fieldName[meshComponent->getSelectionAt ( row )->GetFieldType()] );
+ return QString ( fieldName[selNode->GetFieldType()] );
break;
case 2 :
- return QString ( contentName[meshComponent->getSelectionAt ( row )->GetContentType()] );
+ return QString ( contentName[selNode->GetContentType()] );
break;
case 3 :
- if ( meshComponent->getSelectionAt ( row )->GetSelectionList() )
- return QString::number ( meshComponent->getSelectionAt ( row )->GetSelectionList()->GetNumberOfTuples() );
+ if ( selNode->GetSelectionList() )
+ return QString::number ( selNode->GetSelectionList()->GetNumberOfTuples() );
else
return QString::number ( 0 );
break;
@@ -79,10 +92,24 @@ QVariant MeshSelectionModel::data ( const QModelIndex& index, int role ) const {
break;
}
break;
+ }
+ case Qt::DecorationRole : {
+ if ( col == 1 ) {
+ if ( selNode->GetFieldType() == vtkSelectionNode::POINT )
+ return QIcon ( ":/points" );
+ else if ( selNode->GetFieldType() == vtkSelectionNode::CELL )
+ return QIcon ( ":/cell" );
+ else
+ return QVariant();
+ } else
+ return QVariant();
+ break;
+ }
default :
return QVariant();
break;
}
+
return QVariant();
}
@@ -111,15 +138,152 @@ QVariant MeshSelectionModel::headerData ( int section, Qt::Orientation orientati
return QVariant();
}
-void MeshSelectionModel::updateSelection ( const QString& name ) {
- int index;
- if ((index = meshComponent->getSelectionList().keys().indexOf(name)) > -1) {
- emit dataChanged(this->index(index,0), this->index(index,3));
+int MeshSelectionModel::insertSelection ( const QString& name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, InsertionPolicy policy ) {
+ // TODO : check if a selection of the same name already exists ?
+
+ int index = meshComponent->getSelectionIndex ( name );
+
+ // if no selection with the same name exists, create it and add it to the model
+ // except if the insertion policy is SUBSTRACT
+ if ( ( index < 0 ) && ( policy != SUBSTRACT ) ) {
+ // insert the new row
+ beginInsertRows ( QModelIndex(), meshComponent->getSelections().size(), meshComponent->getSelections().size() );
+
+ vtkSmartPointer< vtkSelectionNode > selNode = vtkSmartPointer< vtkSelectionNode >::New();
+ array->SetName ( name.toStdString().c_str() );
+ selNode->SetFieldType ( fieldType );
+ selNode->SetContentType ( contentType );
+ selNode->SetSelectionList ( array );
+ // TODO direct manipulation of selection list should not be allowed outside MeshComponent
+ // meshComponent->addSelection(name,fieldType,contentType,array);
+ meshComponent->getSelections().append ( selNode );
+ endInsertRows();
+
+ index = meshComponent->getSelections().size()-1;
}
+ // else update the selection data according to insertion policy
+ else {
+ vtkSmartPointer< vtkSelectionNode > selNode = meshComponent->getSelections().at ( index );
+
+ // if the field types are different, the selection data cannot be merged or substracted
+ if ( fieldType != selNode->GetFieldType() && ( policy == MERGE || policy == SUBSTRACT ) )
+ index = -1;
+ else {
+ switch ( policy ) {
+ case REPLACE : {
+ // replace the selection data
+ array->SetName ( name.toStdString().c_str() );
+ selNode->SetFieldType ( fieldType );
+ selNode->SetContentType ( contentType );
+ selNode->SetSelectionList ( array );
+
+ emit ( dataChanged ( this->index ( index, 1 ), this->index ( index, 3 ) ) );
+ }
+ break;
+ // TODO the selection content must be the same
+ case MERGE : {
+ // merge the selection list
+ // in this case, the content type of the new selection list are indices
+ vtkSmartPointer< vtkSelectionNode > newSelNode = vtkSmartPointer< vtkSelectionNode >::New();
+ newSelNode->SetFieldType ( fieldType );
+ newSelNode->SetContentType ( contentType );
+ newSelNode->SetSelectionList ( array );
+
+ selNode->UnionSelectionList ( newSelNode );
+
+ emit ( dataChanged ( this->index ( index, 1 ), this->index ( index, 3 ) ) );
+ }
+ break;
+ case SUBSTRACT : {
+ // substract the selection list
+ // in this case, the content type of the new selection list are indices
+
+ vtkSmartPointer< vtkIdTypeArray > oldIdsArray = vtkIdTypeArray::SafeDownCast ( selNode->GetSelectionList() );
+ vtkSmartPointer< vtkIdTypeArray > newIdsArray = vtkIdTypeArray::SafeDownCast ( array );
+
+ if ( ( !newIdsArray ) || ( !oldIdsArray ) ) {
+ index = -1;
+ break;
+ }
+
+ const int nbOldIndices = oldIdsArray->GetNumberOfTuples();
+ const int nbNewIndices = newIdsArray->GetNumberOfTuples();
+
+ std::vector< vtkIdType > oldIndices ( nbOldIndices );
+ std::vector< vtkIdType > newIndices ( nbNewIndices );
+
+ // sort the indices
+ std::partial_sort_copy ( oldIdsArray->GetPointer ( 0 ), oldIdsArray->GetPointer ( 0 ) +nbOldIndices, oldIndices.begin(), oldIndices.end() );
+ std::partial_sort_copy ( newIdsArray->GetPointer ( 0 ), newIdsArray->GetPointer ( 0 ) +nbNewIndices, newIndices.begin(), newIndices.end() );
+
+ std::vector< vtkIdType > diff ( nbOldIndices );
+
+ // compute the difference between old and new indices
+ std::vector< vtkIdType >::iterator it;
+ it = std::set_difference ( oldIndices.begin(), oldIndices.end(), newIndices.begin(), newIndices.end(), diff.begin() );
+ diff.resize ( it-diff.begin() );
+
+ vtkSmartPointer< vtkIdTypeArray > diffArray = vtkSmartPointer< vtkIdTypeArray >::New();
+ diffArray->SetNumberOfValues ( diff.size() );
+ std::copy ( diff.begin(), diff.end(), diffArray->GetPointer ( 0 ) );
+
+ selNode->SetSelectionList ( diffArray );
+
+ // TODO SubtractSelectionList not available in 5.8 ...
+ //selNode->SubtractSelectionList(newSelNode);
+
+ emit ( dataChanged ( this->index ( index, 1 ), this->index ( index, 3 ) ) );
+ }
+ break;
+ case DISCARD :
+ default :
+ index = -1;
+ break;
+ }
+ }
+ }
+
+ return index;
}
-void MeshSelectionModel::refresh() {
- reset();
+int MeshSelectionModel::removeSelection ( const QString& name ) {
+ int index = meshComponent->getSelectionIndex ( name );
+
+ if ( index >= 0 ) {
+ beginRemoveRows ( QModelIndex(), index, index );
+ meshComponent->getSelections().removeAt ( index );
+ endRemoveRows();
+ }
+
+ return index;
}
-}
\ No newline at end of file
+bool MeshSelectionModel::setData ( const QModelIndex& index, const QVariant& value, int role ) {
+ if (
+ index.isValid() &&
+ role == Qt::EditRole &&
+ index.column() == 0 /*&&
+ index.row() > 0*/
+ ) {
+ // check if the name already exists
+ if ( meshComponent->getSelectionIndex ( value.toString() ) >=0 )
+ return false;
+
+ int row = index.row();
+ meshComponent->getSelections().at ( row )->GetSelectionList()->SetName ( value.toString().toStdString().c_str() );
+ emit ( dataChanged ( index, index ) );
+
+ return true;
+ }
+
+ return false;
+}
+
+Qt::ItemFlags MeshSelectionModel::flags ( const QModelIndex& index ) const {
+ if ( index.column() == 0 )
+ return Qt::ItemIsSelectable | Qt::ItemIsEditable | Qt::ItemIsEnabled ;
+ else
+ return Qt::ItemIsSelectable | Qt::ItemIsEnabled ;
+}
+
+}
diff --git a/sdk/libraries/core/component/mesh/MeshSelectionModel.h b/sdk/libraries/core/component/mesh/MeshSelectionModel.h
index 0658295..d651060 100644
--- a/sdk/libraries/core/component/mesh/MeshSelectionModel.h
+++ b/sdk/libraries/core/component/mesh/MeshSelectionModel.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -23,11 +23,15 @@
* $CAMITK_LICENCE_END$
****************************************************************************/
+#ifndef MESH_SELECTION_MODEL_H
+#define MESH_SELECTION_MODEL_H
+
#include <QAbstractTableModel>
#include<vtkSmartPointer.h>
class vtkSelectionNode;
+class vtkAbstractArray;
namespace camitk {
@@ -43,6 +47,13 @@ class MeshSelectionModel : public QAbstractTableModel {
public :
+ enum InsertionPolicy {
+ REPLACE,
+ MERGE,
+ SUBSTRACT,
+ DISCARD
+ };
+
/**
* @brief Constructor
*/
@@ -66,22 +77,36 @@ public :
/**
* @brief Data header
*/
- QVariant headerData(int section, Qt::Orientation orientation, int role = Qt::DisplayRole) const;
+ QVariant headerData ( int section, Qt::Orientation orientation, int role = Qt::DisplayRole ) const;
/**
- * @brief Get the selection list
+ * @brief Insert a selection.
*/
- QMap< QString, vtkSmartPointer<vtkSelectionNode> >& getSelectionList();
+ int insertSelection ( const QString& name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, InsertionPolicy policy = REPLACE );
- /**
- * @brief Update the selection
- */
- void updateSelection(const QString& name);
+ int removeSelection ( const QString& name );
/**
- * @brief Refresh the model
+ * @brief Edit selection data
*/
- void refresh();
+ bool setData ( const QModelIndex &index, const QVariant &value, int role );
+
+ Qt::ItemFlags flags ( const QModelIndex &index ) const;
+
+// /**
+// * @brief Get the selection list
+// */
+// QMap< QString, vtkSmartPointer<vtkSelectionNode> >& getSelectionList();
+//
+// /**
+// * @brief Update the selection
+// */
+// void updateSelection(const QString& name);
+//
+// /**
+// * @brief Refresh the model
+// */
+// void refresh();
private :
@@ -91,4 +116,6 @@ private :
};
-}
\ No newline at end of file
+}
+
+#endif
diff --git a/sdk/libraries/core/component/mesh/MeshSelectionView.cpp b/sdk/libraries/core/component/mesh/MeshSelectionView.cpp
new file mode 100644
index 0000000..227f8a8
--- /dev/null
+++ b/sdk/libraries/core/component/mesh/MeshSelectionView.cpp
@@ -0,0 +1,41 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "MeshSelectionView.h"
+
+using namespace camitk;
+
+MeshSelectionView::MeshSelectionView ( QWidget* parent ) : QTableView ( parent ) {
+
+}
+
+void MeshSelectionView::mousePressEvent ( QMouseEvent* event ) {
+ QModelIndex item = indexAt ( event->pos() );
+ if ( !item.isValid() )
+ this->selectionModel()->clearSelection();
+ QTableView::mousePressEvent ( event );
+}
+
+
diff --git a/sdk/libraries/core/component/mesh/MeshSelectionView.h b/sdk/libraries/core/component/mesh/MeshSelectionView.h
new file mode 100644
index 0000000..5250a36
--- /dev/null
+++ b/sdk/libraries/core/component/mesh/MeshSelectionView.h
@@ -0,0 +1,55 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef MESH_SELECTION_VIEW_H
+#define MESH_SELECTION_VIEW_H
+
+#include <QTableView>
+#include <QMouseEvent>
+
+namespace camitk {
+
+class MeshComponent;
+
+/**
+ * Qt view for mesh selection
+ * This class use the Qt model/view design.
+ */
+class MeshSelectionView : public QTableView {
+
+public :
+
+ MeshSelectionView ( QWidget* parent = 0 );
+
+protected :
+
+ void mousePressEvent ( QMouseEvent * event );
+
+};
+
+}
+
+#endif
+
diff --git a/sdk/libraries/core/resources/CamiTKIcons.qrc b/sdk/libraries/core/resources/CamiTKIcons.qrc
index 531599c..adbbec9 100644
--- a/sdk/libraries/core/resources/CamiTKIcons.qrc
+++ b/sdk/libraries/core/resources/CamiTKIcons.qrc
@@ -1,5 +1,4 @@
-<!DOCTYPE RCC>
-<RCC version="1.0">
+<RCC>
<qresource prefix="/">
<file alias="camiTKIcon">camitk.png</file>
<file alias="fileNew">filenew.xpm</file>
@@ -32,11 +31,23 @@
<file alias="fileClose">dialogClose.png</file>
<file alias="fileSaveAll">documentSaveAll.png</file>
<file alias="fileSaveAs">documentSaveAs.png</file>
- <file alias="fileQuit">applicationExit.png</file>
- <file alias="showConsole">showConsole.png</file>
- <file alias="pick_cell">pick_cell.png</file>
- <file alias="pick_point">pick_point.png</file>
- <file alias="pick_cell_region">pick_cell_region.png</file>
- <file alias="pick_point_region">pick_point_region.png</file>
+ <file alias="fileQuit">applicationExit.png</file>
+ <file alias="showConsole">showConsole.png</file>
+ <file alias="pick_cell">pick_cell.png</file>
+ <file alias="pick_point">pick_point.png</file>
+ <file alias="pick_cell_region">pick_cell_region.png</file>
+ <file alias="pick_point_region">pick_point_region.png</file>
+ <file alias="points">points.png</file>
+ <file alias="cell">cell.png</file>
+ <file alias="settings">oxygen_icons/categories/applications-system.png</file>
+ <file alias="delete">oxygen_icons/actions/edit-delete.png</file>
+ <file alias="refresh">oxygen_icons/actions/view-refresh.png</file>
+ <file alias="scalars">scalars.png</file>
+ <file alias="vectors">vectors.png</file>
+ <file alias="play">oxygen_icons/actions/media-playback-start.png</file>
+ <file alias="pause">oxygen_icons/actions/media-playback-pause.png</file>
+ <file alias="stop">oxygen_icons/actions/media-playback-stop.png</file>
+ <file alias="backwrad">oxygen_icons/actions/media-skip-backward.png</file>
+ <file alias="forward">oxygen_icons/actions/media-skip-forward.png</file>
</qresource>
</RCC>
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new file mode 100644
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diff --git a/sdk/libraries/core/resources/cell.svg b/sdk/libraries/core/resources/cell.svg
new file mode 100644
index 0000000..21ad16e
--- /dev/null
+++ b/sdk/libraries/core/resources/cell.svg
@@ -0,0 +1,120 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<!-- Created with Inkscape (http://www.inkscape.org/) -->
+
+<svg
+ xmlns:osb="http://www.openswatchbook.org/uri/2009/osb"
+ xmlns:dc="http://purl.org/dc/elements/1.1/"
+ xmlns:cc="http://creativecommons.org/ns#"
+ xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+ xmlns:svg="http://www.w3.org/2000/svg"
+ xmlns="http://www.w3.org/2000/svg"
+ xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
+ xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
+ width="256"
+ height="256"
+ id="svg2"
+ version="1.1"
+ inkscape:version="0.48.3.1 r9886"
+ sodipodi:docname="cell.svg"
+ inkscape:export-filename="/home/mbailet/Dev/CamiTK/sdk/libraries/core/resources/cell.png"
+ inkscape:export-xdpi="90"
+ inkscape:export-ydpi="90">
+ <defs
+ id="defs4">
+ <linearGradient
+ id="linearGradient5227"
+ osb:paint="solid">
+ <stop
+ style="stop-color:#000000;stop-opacity:1;"
+ offset="0"
+ id="stop5229" />
+ </linearGradient>
+ <inkscape:perspective
+ sodipodi:type="inkscape:persp3d"
+ inkscape:vp_x="-74.958565 : 34.953753 : 0"
+ inkscape:vp_y="6.1230316e-14 : 999.99997 : 0"
+ inkscape:vp_z="115.82604 : 54.010568 : 0"
+ inkscape:persp3d-origin="132.74438 : 64.926708 : 1"
+ id="perspective2985" />
+ </defs>
+ <sodipodi:namedview
+ id="base"
+ pagecolor="#ffffff"
+ bordercolor="#666666"
+ borderopacity="1.0"
+ inkscape:pageopacity="0.0"
+ inkscape:pageshadow="2"
+ inkscape:zoom="1.42"
+ inkscape:cx="97.056393"
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+ inkscape:document-units="px"
+ inkscape:current-layer="layer1"
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+ inkscape:window-height="1004"
+ inkscape:window-x="-2"
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+ inkscape:window-maximized="1" />
+ <metadata
+ id="metadata7">
+ <rdf:RDF>
+ <cc:Work
+ rdf:about="">
+ <dc:format>image/svg+xml</dc:format>
+ <dc:type
+ rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+ <dc:title></dc:title>
+ </cc:Work>
+ </rdf:RDF>
+ </metadata>
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+ inkscape:label="Layer 1"
+ inkscape:groupmode="layer"
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+ id="path7381" />
+ </marker>
+ <marker
+ style="overflow:visible;"
+ id="Arrow1MendF"
+ refX="0.0"
+ refY="0.0"
+ orient="auto"
+ inkscape:stockid="Arrow1MendF">
+ <path
+ transform="scale(0.4) rotate(180) translate(10,0)"
+ style="stroke:#37c837;stroke-width:1.0pt;fill:#37c837;fill-rule:evenodd"
+ d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
+ id="path7384" />
+ </marker>
+ <marker
+ style="overflow:visible"
+ id="Arrow1Mendl-3"
+ refX="0"
+ refY="0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendl">
+ <path
+ transform="matrix(-0.4,0,0,-0.4,-4,0)"
+ style="fill:#2ca02c;fill-rule:evenodd;stroke:#2ca02c;stroke-width:1pt"
+ d="M 0,0 5,-5 -12.5,0 5,5 0,0 z"
+ id="path7360-8"
+ inkscape:connector-curvature="0" />
+ </marker>
+ <marker
+ style="overflow:visible"
+ id="Arrow1Mendl-7"
+ refX="0"
+ refY="0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendl">
+ <path
+ transform="matrix(-0.4,0,0,-0.4,-4,0)"
+ style="fill:#2ca02c;fill-rule:evenodd;stroke:#2ca02c;stroke-width:1pt"
+ d="M 0,0 5,-5 -12.5,0 5,5 0,0 z"
+ id="path7360-3"
+ inkscape:connector-curvature="0" />
+ </marker>
+ <marker
+ style="overflow:visible"
+ id="Arrow1Mendl-73"
+ refX="0"
+ refY="0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendl">
+ <path
+ transform="matrix(-0.4,0,0,-0.4,-4,0)"
+ style="fill:#2ca02c;fill-rule:evenodd;stroke:#2ca02c;stroke-width:1pt"
+ d="M 0,0 5,-5 -12.5,0 5,5 0,0 z"
+ id="path7360-1"
+ inkscape:connector-curvature="0" />
+ </marker>
+ <marker
+ style="overflow:visible"
+ id="Arrow1Mendl-4"
+ refX="0"
+ refY="0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendl">
+ <path
+ transform="matrix(-0.4,0,0,-0.4,-4,0)"
+ style="fill:#2ca02c;fill-rule:evenodd;stroke:#2ca02c;stroke-width:1pt"
+ d="M 0,0 5,-5 -12.5,0 5,5 0,0 z"
+ id="path7360-35"
+ inkscape:connector-curvature="0" />
+ </marker>
+ <marker
+ style="overflow:visible;"
+ id="Arrow1MendlC"
+ refX="0.0"
+ refY="0.0"
+ orient="auto"
+ inkscape:stockid="Arrow1MendlC">
+ <path
+ transform="scale(0.4) rotate(180) translate(10,0)"
+ style="fill-rule:evenodd;stroke:#8dd35f;stroke-width:1.0pt;fill:#8dd35f"
+ d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
+ id="path4194" />
+ </marker>
+ <marker
+ style="overflow:visible;"
+ id="Arrow1Mendlk"
+ refX="0.0"
+ refY="0.0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendlk">
+ <path
+ transform="scale(0.4) rotate(180) translate(10,0)"
+ style="fill-rule:evenodd;stroke:#5aa02c;stroke-width:1.0pt;fill:#5aa02c"
+ d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
+ id="path4197" />
+ </marker>
+ <marker
+ style="overflow:visible;"
+ id="Arrow1MendlI"
+ refX="0.0"
+ refY="0.0"
+ orient="auto"
+ inkscape:stockid="Arrow1MendlI">
+ <path
+ transform="scale(0.4) rotate(180) translate(10,0)"
+ style="fill-rule:evenodd;stroke:#71c837;stroke-width:1.0pt;fill:#71c837"
+ d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
+ id="path4200" />
+ </marker>
+ <marker
+ style="overflow:visible;"
+ id="Arrow1Mendlb"
+ refX="0.0"
+ refY="0.0"
+ orient="auto"
+ inkscape:stockid="Arrow1Mendlb">
+ <path
+ transform="scale(0.4) rotate(180) translate(10,0)"
+ style="fill-rule:evenodd;stroke:#71c837;stroke-width:1.0pt;fill:#71c837"
+ d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
+ id="path4203" />
+ </marker>
+ </defs>
+ <metadata
+ id="metadata5276">
+ <rdf:RDF>
+ <cc:Work
+ rdf:about="">
+ <dc:format>image/svg+xml</dc:format>
+ <dc:type
+ rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
+ <dc:title />
+ </cc:Work>
+ </rdf:RDF>
+ </metadata>
+ <g
+ transform="translate(0,-796.36218)"
+ id="layer1"
+ inkscape:groupmode="layer"
+ inkscape:label="Layer 1">
+ <path
+ sodipodi:nodetypes="cc"
+ inkscape:connector-curvature="0"
+ id="path3558-4-0-2"
+ d="M 121,913.36218 25.171076,820.36285"
+ style="fill:#5aa02c;fill-opacity:1;stroke:#5aa02c;stroke-width:10;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-opacity:1;stroke-dasharray:none;marker-start:none;marker-end:url(#Arrow1Mendlk)" />
+ <path
+ sodipodi:nodetypes="cc"
+ inkscape:connector-curvature="0"
+ id="path3558-4-0-2-9"
+ d="M 241,913.36218 144.48038,820.36285"
+ style="fill:#71c837;fill-opacity:1;stroke:#71c837;stroke-width:10;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-opacity:1;stroke-dasharray:none;marker-start:none;marker-end:url(#Arrow1Mendlb)" />
+ <path
+ sodipodi:nodetypes="cc"
+ inkscape:connector-curvature="0"
+ id="path3558-4-0-2-9-4"
+ d="M 116,1038.3622 25.171075,946.84251"
+ style="fill:#71c837;fill-opacity:1;stroke:#71c837;stroke-width:10;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-opacity:1;stroke-dasharray:none;marker-start:none;marker-end:url(#Arrow1MendlI)" />
+ <path
+ sodipodi:nodetypes="cc"
+ inkscape:connector-curvature="0"
+ id="path3558-4-0-2-9-4-1"
+ d="M 236,1038.3622 144.48038,946.84251"
+ style="fill:#d5ffd5;fill-opacity:1;stroke:#8dd35f;stroke-width:10;stroke-linecap:butt;stroke-linejoin:miter;stroke-miterlimit:4;stroke-opacity:1;stroke-dasharray:none;marker-start:none;marker-end:url(#Arrow1MendlC)" />
+ </g>
+</svg>
diff --git a/sdk/libraries/core/utils/AbortException.h b/sdk/libraries/core/utils/AbortException.h
index 44c2853..167663c 100644
--- a/sdk/libraries/core/utils/AbortException.h
+++ b/sdk/libraries/core/utils/AbortException.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/ConsoleStream.h b/sdk/libraries/core/utils/ConsoleStream.h
index 0c6a982..de0ddfe 100644
--- a/sdk/libraries/core/utils/ConsoleStream.h
+++ b/sdk/libraries/core/utils/ConsoleStream.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/Log.cpp b/sdk/libraries/core/utils/Log.cpp
index 78b4272..9ddfaba 100644
--- a/sdk/libraries/core/utils/Log.cpp
+++ b/sdk/libraries/core/utils/Log.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/Log.h b/sdk/libraries/core/utils/Log.h
index b42698f..c9a9107 100644
--- a/sdk/libraries/core/utils/Log.h
+++ b/sdk/libraries/core/utils/Log.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/ObjectController.cpp b/sdk/libraries/core/utils/ObjectController.cpp
index d014f29..fdc8527 100644
--- a/sdk/libraries/core/utils/ObjectController.cpp
+++ b/sdk/libraries/core/utils/ObjectController.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -35,11 +35,11 @@
#include "qtpropertymanager.h"
// -- QT stuff
-#include <QtCore/QMetaObject>
-#include <QtCore/QMetaProperty>
-#include <QtGui/QVBoxLayout>
-#include <QtGui/QScrollArea>
-#include <QtGui/QMessageBox>
+#include <QMetaObject>
+#include <QMetaProperty>
+#include <QVBoxLayout>
+#include <QScrollArea>
+#include <QMessageBox>
#include <QSize>
// -- stl stuff
@@ -360,6 +360,13 @@ void ObjectControllerPrivate::addDynamicProperties ( QObject *edited ) {
Q_RETURN_ARG(Property*, camitkProp),
Q_ARG(QString, pName));
+ // try harder (in case the edited object was not declared in the camitk namespace)
+ if (!getPropertyExist) {
+ getPropertyExist = QMetaObject::invokeMethod(edited, "getProperty", Qt::DirectConnection,
+ Q_RETURN_ARG(camitk::Property*, camitkProp),
+ Q_ARG(QString, pName));
+ }
+
if (!getPropertyExist || camitkProp==NULL) {
// the old way, build a simple dynamic variant property
subProperty = buildQtVariantProperty(pName, (QMetaType::Type) pValue.userType(), pValue, true, /* isWritable*/ true, false, false, true);
diff --git a/sdk/libraries/core/utils/ObjectController.h b/sdk/libraries/core/utils/ObjectController.h
index d583a68..9d7787d 100644
--- a/sdk/libraries/core/utils/ObjectController.h
+++ b/sdk/libraries/core/utils/ObjectController.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,7 +31,7 @@
#include <QtVariantProperty>
// -- QT stuff
-#include <QtGui/QWidget>
+#include <QWidget>
#include <QPushButton>
#include <QVBoxLayout>
#include <QScrollArea>
@@ -305,4 +305,7 @@ public:
}
+// to use this enum as a CamiTK property
+Q_DECLARE_METATYPE(camitk::ObjectController::ViewMode)
+
#endif
diff --git a/sdk/libraries/core/utils/PlaneC.cpp b/sdk/libraries/core/utils/PlaneC.cpp
index 85f719b..8e6b36d 100644
--- a/sdk/libraries/core/utils/PlaneC.cpp
+++ b/sdk/libraries/core/utils/PlaneC.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/PlaneC.h b/sdk/libraries/core/utils/PlaneC.h
index 1f256c9..8470167 100644
--- a/sdk/libraries/core/utils/PlaneC.h
+++ b/sdk/libraries/core/utils/PlaneC.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/Property.cpp b/sdk/libraries/core/utils/Property.cpp
index fa38830..a8ebdd5 100644
--- a/sdk/libraries/core/utils/Property.cpp
+++ b/sdk/libraries/core/utils/Property.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/Property.h b/sdk/libraries/core/utils/Property.h
index 7a01f04..f602fb6 100644
--- a/sdk/libraries/core/utils/Property.h
+++ b/sdk/libraries/core/utils/Property.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -49,7 +49,7 @@ namespace camitk {
*
* Properties can be grouped in subgroups, see Property::setGroupName().
*
- * Basically this is a way to overcomes the Qt Meta Object properties limitations.
+ * Basically this is a way to overcome the Qt Meta Object properties limitations.
* A camitk::Property enriches a Qt Meta Object property (a very simplified
* Decorator Design Pattern).
*
@@ -59,6 +59,71 @@ namespace camitk {
* Note that a camitk::Property is represented as a regular Qt Meta Object property
* as well (the value of the camitk::Property is in fact stored by the Qt Meta Object property)
*
+ * Here are some examples to get started with:
+ * \code
+ // Demonstrates how rich text can be used in description
+ addParameter(new Property("Bool Prop", false, "This a <i>normal</i> bool property.<br/><b>Note:</b> Rich text description!<br/>See also: <a href=\"http://camitk.imag.fr\">CamiTK web page</a>", ""));
+
+ // beware: the action takes ownership of the Property pointer
+ // This means that the line above does not generate memory leak.
+
+ // Demonstrates how properties can be set as read-only
+ // Demonstrates how properties can be grouped.
+ // Here all read-only properties are assemble in the same eponymic group
+ Property *readOnlyBool = new Property("Read Only Bool", true, "This a read-only boolean", "");
+ readOnlyBool->setReadOnly(true);
+ readOnlyBool->setGroupName("Read Only Properties");
+ addParameter(readOnlyBool);
+
+ // beware: the action takes ownership of the Property pointer
+ // This means that you should NOT delete readOnlyBool in the action desctructor
+
+ // Demonstrates how integer properties can be bounded
+ Property *boundedInt = new Property("Bounded Int", 12, "An integer bounded between 0 and 20", "");
+ boundedInt->setAttribute("minimum", 0);
+ boundedInt->setAttribute("maximum", 20);
+ boundedInt->setGroupName("Numeric Properties");
+ addParameter(boundedInt);
+
+ // Demonstrates how double properties can be half-bounded
+ Property *doubleWithMax = new Property("Double With Max", -10.0, "A double with a max value of -4.2", "");
+ doubleWithMax->setAttribute("maximum", -4.2);
+ doubleWithMax->setGroupName("Numeric Properties");
+ addParameter(doubleWithMax);
+
+ Property *intWithSingleStep = new Property("Int With Single Step", -10, "An integer with a single step of <i>5</i>", "");
+ intWithSingleStep->setAttribute("singleStep", 5);
+ intWithSingleStep->setGroupName("Numeric Properties");
+ addParameter(intWithSingleStep);
+
+ Property *doubleWithStepAndDecimal = new Property("Double With Single Step And Precision", 3.14159, "A double with 5 decimals and a single step of 1.10<sup>-5</sup>", "");
+ doubleWithStepAndDecimal->setAttribute("singleStep", 10e-6);
+ doubleWithStepAndDecimal->setAttribute("decimals", 5);
+ doubleWithStepAndDecimal->setGroupName("Numeric Properties");
+ addParameter(doubleWithStepAndDecimal);
+
+ Property *intWithDecimal = new Property("Int With Precision", 4, "An integer with a precision set to 5 decimals: this should not affect it.", "");
+ intWithDecimal->setAttribute("decimals", 5);
+ intWithDecimal->setGroupName("Numeric Properties");
+ addParameter(intWithDecimal);
+
+ Property *readOnlyQVector3D = new Property("Read Only QVector3D", QVector3D(-4.0, 2.0, 0.1), "A read-only QVector3D", "");
+ readOnlyQVector3D->setReadOnly(true);
+ readOnlyQVector3D->setGroupName("Read Only Properties");
+ addParameter(readOnlyQVector3D);
+
+ Property *stringWithRegExp = new Property("QString Constrained by RegExp", QString("loweronly"), "A QString contrained to lowercase characters only (no separators, numbers...)", "");
+ stringWithRegExp->setAttribute("regExp",QRegExp("[a-z]*"));
+ addParameter(stringWithRegExp);
+
+ Property *constrainedQRect = new Property("Constrained QRect", QRect(10,10,20,20), "A QRect contrained to (0,0,50,50)", "");
+ constrainedQRect->setAttribute("constraint", QRect(0,0,50,50));
+ addParameter(constrainedQRect);
+
+ Property *constrainedQVector3D = new Property("Constrained QVector3D", QVector3D(1.1, 2.2, 3.3), "A constrained QVector3D (not yet implemented)", "");
+ constrainedQVector3D->setAttribute("constraint", QVector3D(10.0, 10.0, 10.0));
+ addParameter(constrainedQVector3D);
+ \endcode
* @note
* To create a new Property, prefer using Property.
* To check if a Property has been added to your Component / Action, use either Component::getProperty() or Action::getProperty() methods.
@@ -188,7 +253,7 @@ namespace camitk {
\endcode
\note
This is not exactly a decorator pattern, as the Property class is not abstract. The Qt
- Meta Object is still hold by the QtObject inherited class (e.g. Component or Action).
+ Meta Object is still held by the QtObject inherited class (e.g. Component or Action).
The camitk::Property class adds description, readOnly status and specific attributes to
a QObject dynamic property.
*/
@@ -205,6 +270,9 @@ public:
*/
Property(QString name, const QVariant &variant, QString description, QString unit);
+ /// Destructor
+ virtual ~Property() {}
+
/// get the name of the property
const QString & getName() const;
diff --git a/sdk/libraries/core/utils/PropertyObject.cpp b/sdk/libraries/core/utils/PropertyObject.cpp
new file mode 100644
index 0000000..5fec9fa
--- /dev/null
+++ b/sdk/libraries/core/utils/PropertyObject.cpp
@@ -0,0 +1,63 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#include "PropertyObject.h"
+
+namespace camitk {
+
+// -------------------- Constructor --------------------
+PropertyObject::PropertyObject(QString name) : QObject() {
+ setObjectName(name);
+}
+
+// -------------------- Destructor --------------------
+PropertyObject::~PropertyObject() {
+ // delete all properties
+ foreach(Property* prop, propertiesMap.values())
+ delete prop;
+ propertiesMap.clear();
+}
+
+// -------------------- addProperty --------------------
+bool PropertyObject::addProperty(Property *prop) {
+ // add to the map
+ propertiesMap.insert(prop->getName(), prop);
+
+ // add a dynamic Qt Meta Object property with the same name
+ return setProperty(prop->getName().toStdString().c_str(), prop->getInitialValue() );
+}
+
+// -------------------- getProperty --------------------
+Property* PropertyObject::getProperty(QString name) {
+ return propertiesMap.value(name);
+}
+
+// -------------------- removeProperty --------------------
+void PropertyObject::removeProperty(Property *prop) {
+ // remove the given property from the object by setting its value to an invalid variant
+ setProperty(prop->getName().toStdString().c_str(), QVariant());
+}
+
+}
diff --git a/sdk/libraries/core/utils/PropertyObject.h b/sdk/libraries/core/utils/PropertyObject.h
new file mode 100644
index 0000000..4607c9b
--- /dev/null
+++ b/sdk/libraries/core/utils/PropertyObject.h
@@ -0,0 +1,103 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+#ifndef PROPERTYOBJECT_H
+#define PROPERTYOBJECT_H
+
+// Qt includes
+#include <QObject>
+
+// CamiTK includes
+#include "CamiTKAPI.h"
+#include "Property.h"
+
+namespace camitk {
+
+/**
+ * @ingroup group_sdk_libraries_core_utils
+ *
+ * @brief
+ * This class describes a property object.
+ *
+ * A property object is simply a QObject tagged with some CamiTK Properties
+ * The idea is to have an object which implements all the necessary methods to take advantages of the
+ * CamiTK Properties within the ObjectController
+ *
+ * @see ObjectController, Property
+ */
+class CAMITK_API PropertyObject : public QObject {
+
+ Q_OBJECT
+
+public:
+ /**
+ * Default constructor
+ * @param name The name of the PropertyObject instance. This one would be displayed in any SettingsDialog entries.
+ */
+ PropertyObject(QString name);
+
+ /// Destructor
+ virtual ~PropertyObject();
+
+ /**
+ * Tag a new CamiTK property to this object.
+ * If the property already exist, it will just change its value.
+ *
+ * \note
+ * The object takes ownership of the Property instance.
+ *
+ * @return false if the Qt Meta Object property was added by this method
+ * (otherwise the property was already defined and true is returned if it was successfully updated)
+ */
+ virtual bool addProperty(Property*);
+
+ /**
+ * Get a Property given its name
+ * @param name the property name
+ * @return NULL if the name does not match any property name
+ *
+ * @note
+ * This method is necessary by the ObjectController to take advantage of the camitk properties
+ *
+ * @see Property, ObjectController
+ */
+ Q_INVOKABLE virtual Property* getProperty(QString name);
+
+ /**
+ * Remove a CamiTK property of this object
+ */
+ virtual void removeProperty(Property*);
+
+private:
+ /// @name Property management
+ ///@{
+ /// list of CamiTK properties decorating the object
+ QMap<QString, Property*> propertiesMap;
+ ///@}
+};
+
+}
+
+#endif // PROPERTYOBJECT_H
diff --git a/sdk/libraries/core/utils/SliderSpinBoxWidget.cpp b/sdk/libraries/core/utils/SliderSpinBoxWidget.cpp
index 9131f22..bc68eea 100644
--- a/sdk/libraries/core/utils/SliderSpinBoxWidget.cpp
+++ b/sdk/libraries/core/utils/SliderSpinBoxWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/SliderSpinBoxWidget.h b/sdk/libraries/core/utils/SliderSpinBoxWidget.h
index 448ce6c..c82d4f2 100644
--- a/sdk/libraries/core/utils/SliderSpinBoxWidget.h
+++ b/sdk/libraries/core/utils/SliderSpinBoxWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/utils/SliderTextWidget.cpp b/sdk/libraries/core/utils/SliderTextWidget.cpp
index e0e2a17..140c083 100644
--- a/sdk/libraries/core/utils/SliderTextWidget.cpp
+++ b/sdk/libraries/core/utils/SliderTextWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -33,7 +33,7 @@
namespace camitk {
//------------ Constructor ------------------------
-SliderTextWidget::SliderTextWidget(QWidget* parent, Qt::WFlags fl) : QWidget(parent, fl) {
+SliderTextWidget::SliderTextWidget(QWidget* parent, Qt::WindowFlags fl) : QWidget(parent, fl) {
QVBoxLayout *vLayout= new QVBoxLayout(this);
diff --git a/sdk/libraries/core/utils/SliderTextWidget.h b/sdk/libraries/core/utils/SliderTextWidget.h
index 4acb797..db25066 100644
--- a/sdk/libraries/core/utils/SliderTextWidget.h
+++ b/sdk/libraries/core/utils/SliderTextWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -60,7 +60,7 @@ class CAMITK_API SliderTextWidget : public QWidget {
public:
/// Default constructor, name is automatically used as the text label
- SliderTextWidget(QWidget* parent = 0, Qt::WFlags fl = 0);
+ SliderTextWidget(QWidget* parent = 0, Qt::WindowFlags fl = 0);
/// Destructor
~SliderTextWidget();
diff --git a/sdk/libraries/core/viewer/.directory b/sdk/libraries/core/viewer/.directory
new file mode 100644
index 0000000..abeaf13
--- /dev/null
+++ b/sdk/libraries/core/viewer/.directory
@@ -0,0 +1,4 @@
+[Dolphin]
+Timestamp=2016,3,22,15,30,33
+Version=3
+ViewMode=2
diff --git a/sdk/libraries/core/viewer/ActionViewer.cpp b/sdk/libraries/core/viewer/ActionViewer.cpp
index 93d6d58..7aa501a 100644
--- a/sdk/libraries/core/viewer/ActionViewer.cpp
+++ b/sdk/libraries/core/viewer/ActionViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -324,6 +324,8 @@ void ActionViewer::embedActionWidget(Action *action) {
widgetHistory.insert(selected, action);
actionWidgetStack->setCurrentIndex(actionWidgetIndex);
actionWidgetStack->update();
+ // ignore size policy of widget so that it can be resized
+ actionWidgetStack->setSizePolicy(QSizePolicy::Ignored, QSizePolicy::Ignored);
// update search panel
familyComboBox->setCurrentIndex(familyComboBox->findText(action->getFamily()));
@@ -331,18 +333,6 @@ void ActionViewer::embedActionWidget(Action *action) {
nameComboBox->setCurrentIndex(nameComboBox->findText(action->getName()));
}
-
-
-
-
-
-
-
-
-
-
-
-
// ----------------------------------------------------------------
//
// OBSOLETE PUBLIC METHODS
diff --git a/sdk/libraries/core/viewer/ActionViewer.h b/sdk/libraries/core/viewer/ActionViewer.h
index 27b769b..c5e3e5a 100644
--- a/sdk/libraries/core/viewer/ActionViewer.h
+++ b/sdk/libraries/core/viewer/ActionViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/viewer/Explorer.cpp b/sdk/libraries/core/viewer/Explorer.cpp
index a1b4c0f..0740b28 100644
--- a/sdk/libraries/core/viewer/Explorer.cpp
+++ b/sdk/libraries/core/viewer/Explorer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -77,7 +77,7 @@ QWidget * Explorer::getWidget(QWidget * parent) {
headerTitles << "Name" << "Size" ;
explorerTree->setHeaderLabels(headerTitles);
explorerTree->header()->setStretchLastSection(false);
- explorerTree->header()->setResizeMode(0, QHeaderView::ResizeToContents); // First column stretch to what is needed
+ explorerTree->header()->setSectionResizeMode(0, QHeaderView::ResizeToContents); // First column stretch to what is needed
// Unsortable column
explorerTree->setSortingEnabled(false);
// Multiple selection (click + Shift or Control key)
diff --git a/sdk/libraries/core/viewer/Explorer.h b/sdk/libraries/core/viewer/Explorer.h
index 9f81d97..a98aad7 100644
--- a/sdk/libraries/core/viewer/Explorer.h
+++ b/sdk/libraries/core/viewer/Explorer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/viewer/FrameExplorer.cpp b/sdk/libraries/core/viewer/FrameExplorer.cpp
index edd7cc5..0a89161 100644
--- a/sdk/libraries/core/viewer/FrameExplorer.cpp
+++ b/sdk/libraries/core/viewer/FrameExplorer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -72,7 +72,7 @@ QWidget * FrameExplorer::getWidget(QWidget * parent) {
headerTitles << "Name" << "ComponentName" ;
explorerTree->setHeaderLabels(headerTitles);
explorerTree->header()->setStretchLastSection(false);
- explorerTree->header()->setResizeMode(0, QHeaderView::ResizeToContents); // First column stretch to what is needed
+ explorerTree->header()->setSectionResizeMode(0, QHeaderView::ResizeToContents); // First column stretch to what is needed
// Unsortable column
explorerTree->setSortingEnabled(false);
// Multiple selection (click + Shift or Control key)
diff --git a/sdk/libraries/core/viewer/FrameExplorer.h b/sdk/libraries/core/viewer/FrameExplorer.h
index fc428aa..f36b0ac 100644
--- a/sdk/libraries/core/viewer/FrameExplorer.h
+++ b/sdk/libraries/core/viewer/FrameExplorer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/viewer/InteractiveViewer.cpp b/sdk/libraries/core/viewer/InteractiveViewer.cpp
index ab28461..d86d047 100644
--- a/sdk/libraries/core/viewer/InteractiveViewer.cpp
+++ b/sdk/libraries/core/viewer/InteractiveViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -24,13 +24,14 @@
****************************************************************************/
// -- Core stuff
-#include "InteractiveViewer.h"
#include "RendererWidget.h"
+#include "InteractiveViewer.h"
#include "SliderSpinBoxWidget.h"
#include "Application.h"
#include "Log.h"
#include "Action.h"
#include "MeshComponent.h"
+#include "PropertyObject.h"
// -- stl stuff
#include <algorithm>
@@ -127,23 +128,27 @@ InteractiveViewer * InteractiveViewer::getViewer ( QString name ) {
// See Image Reorientation Action Documentation...
// singletonInstance->toggleOrientationDecorations(false);
if ( name == defaultNames[1] ) { // Axial Viewer
- singletonInstance->getRendererWidget()->setCameraOrientation(RendererWidget::RIGHT_DOWN);
- QString letters[4] = {QString("R"), QString("L"), QString("A"), QString("P")};
- singletonInstance->getRendererWidget()->setOrientationDecorationsLetters(letters);
- singletonInstance->toggleOrientationDecorations(true);
- singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection(1);
+ singletonInstance->getRendererWidget()->setCameraOrientation ( RendererWidget::RIGHT_DOWN );
+ QString letters[4] = {QString ( "R" ), QString ( "L" ), QString ( "A" ), QString ( "P" ) };
+ singletonInstance->getRendererWidget()->setOrientationDecorationsLetters ( letters );
+ singletonInstance->toggleOrientationDecorations ( true );
+ singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection ( 1 );
} else if ( name == defaultNames[2] ) { // Coronal Viewer
- singletonInstance->getRendererWidget()->setCameraOrientation(RendererWidget::LEFT_BACK);
- QString letters[4] = {QString("R"), QString("L"), QString("S"), QString("I")};
- singletonInstance->getRendererWidget()->setOrientationDecorationsLetters(letters);
- singletonInstance->toggleOrientationDecorations(true);
- singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection(1);
+ singletonInstance->getRendererWidget()->setCameraOrientation ( RendererWidget::LEFT_BACK );
+ QString letters[4] = {QString ( "R" ), QString ( "L" ), QString ( "S" ), QString ( "I" ) };
+ singletonInstance->getRendererWidget()->setOrientationDecorationsLetters ( letters );
+ singletonInstance->toggleOrientationDecorations ( true );
+ singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection ( 1 );
} else if ( name == defaultNames[3] ) { // Sagittal Viewer
- singletonInstance->getRendererWidget()->setCameraOrientation(RendererWidget::BACK_DOWN);
- QString letters[4] = {QString("A"), QString("P"), QString("S"), QString("I")};
- singletonInstance->getRendererWidget()->setOrientationDecorationsLetters(letters);
- singletonInstance->toggleOrientationDecorations(true);
- singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection(1);
+ singletonInstance->getRendererWidget()->setCameraOrientation ( RendererWidget::BACK_DOWN );
+ QString letters[4] = {QString ( "A" ), QString ( "P" ), QString ( "S" ), QString ( "I" ) };
+ singletonInstance->getRendererWidget()->setOrientationDecorationsLetters ( letters );
+ singletonInstance->toggleOrientationDecorations ( true );
+ singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection ( 1 );
+ } else if ( name == defaultNames[4] ) { // Arbitrary Viewer
+// singletonInstance->getRendererWidget()->setCameraOrientation ( RendererWidget::RIGHT_DOWN );
+ singletonInstance->toggleOrientationDecorations ( false );
+// singletonInstance->getRendererWidget()->getActiveCamera()->SetParallelProjection ( 1 );
}
@@ -201,18 +206,32 @@ InteractiveViewer::InteractiveViewer ( QString & name, ViewerType type ) : Viewe
//-- set picking mode
pickingEffectIsSelecting = true; // default effect
+ isPicking = false; // by default, viewer is not picking
if (myType == SLICE_VIEWER)
// by default, the 2D scenes are set to pick slice pixels
- initPicking(InteractiveViewer::PIXEL_PICKING);
+ initPicking ( InteractiveViewer::PIXEL_PICKING );
else
// no picking
- initPicking(InteractiveViewer::NO_PICKING);
+ initPicking ( InteractiveViewer::NO_PICKING );
//-- connection for selection
connector = vtkSmartPointer<vtkEventQtSlotConnect>::New();
connector->Connect ( rendererWidget->GetInteractor(), vtkCommand::EndPickEvent, this, SLOT ( picked() ) );
+ // scalar data model
+ scalarDataModel = new MeshDataFilterModel(MeshDataModel::POINTS | MeshDataModel::CELLS,
+ MeshDataModel::SCALARS,
+ this);
+
+ // combo box for viewing the scalar data model
+ scalarDataComboBox = new QComboBox(viewerToolBar);
+ scalarDataComboBox->setModel(scalarDataModel);
+ scalarDataComboBox->setMinimumWidth(150);
+
+ // create the different properties of the viewers
+ createProperties();
+
// init from settings
initSettings();
}
@@ -234,30 +253,28 @@ InteractiveViewer::~InteractiveViewer() {
// ---------------------- initSettings ----------------------------
void InteractiveViewer::initSettings() {
QSettings & settings = Application::getSettings();
-
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
+ settings.beginGroup ( Application::getName() + ".InteractiveViewer." + objectName().simplified().replace(" ",""));
// the background color
QColor bg;
-
- if ( myType == GEOMETRY_VIEWER )
+ if ( myType == GEOMETRY_VIEWER ) {
// default is white
- bg = settings.value ( "backgroundColor", QColor::fromRgbF ( 1.0, 1.0, 1.0 ) ).value<QColor>();
- else
+ bg.setNamedColor(settings.value ( "backgroundColor", QColor::fromRgbF ( 1.0, 1.0, 1.0 ) ).toString());
+ propertyObject->setProperty(backgroundColorProperty->getName().toStdString().c_str(), bg);
+ } else {
// default is black
- bg = settings.value ( "backgroundColor", QColor::fromRgbF ( 0.0, 0.0, 0.0 ) ).value<QColor>();
-
- rendererWidget->setBackgroundColor ( bg.redF(), bg.greenF(), bg.blueF() );
+ bg.setNamedColor(settings.value ( "backgroundColor", QColor::fromRgbF ( 0.0, 0.0, 0.0 ) ).toString());
+ }
// the gradient background
bool gradientBackground;
- if ( myType == GEOMETRY_VIEWER )
+ if ( myType == GEOMETRY_VIEWER ) {
gradientBackground = settings.value ( "gradientBackground", true ).toBool();
- else
+ propertyObject->setProperty(backgroundGradientColorProperty->getName().toStdString().c_str(), gradientBackground);
+ } else {
gradientBackground = settings.value ( "gradientBackground", false ).toBool();
-
- rendererWidget->setGradientBackground ( gradientBackground );
+ }
// the control mode
RendererWidget::ControlMode controlMode;
@@ -275,22 +292,45 @@ void InteractiveViewer::initSettings() {
rendererWidget->setCameraOrientation ( cameraOrientation );
// highlight mode
- highlightMode = ( HighlightMode ) settings.value ( "highlightMode", SELECTION ).toInt();
+ HighlightMode highlightMode = ( HighlightMode ) settings.value ( "highlightMode", SELECTION ).toInt();
+ propertyObject->setProperty(highlightModeProperty->getName().toStdString().c_str(), highlightMode);
- // other
- linesAsTubes = settings.value ( "linesAsTubes", false ).toBool(); // default false
+ // lines as tubes
+ bool linesAsTubes = settings.value ( "linesAsTubes", false ).toBool(); // default false
+ propertyObject->setProperty(linesAsTubesProperty->getName().toStdString().c_str(), linesAsTubes);
+ // backface culling
bool backfaceCulling = settings.value ( "backfaceCulling", false ).toBool(); // default false
- rendererWidget->setBackfaceCulling ( backfaceCulling );
+ propertyObject->setProperty(backfaceCullingProperty->getName().toStdString().c_str(), backfaceCulling);
+ // point size
double pointSize = settings.value ( "pointSize", 4.0 ).toDouble();
- rendererWidget->setPointSize ( pointSize );
+ propertyObject->setProperty(pointSizeProperty->getName().toStdString().c_str(), pointSize);
// orientation letters
- if (myType == GEOMETRY_VIEWER)
- rendererWidget->toggleOrientationDecorations(false);
+ if ( myType == GEOMETRY_VIEWER )
+ rendererWidget->toggleOrientationDecorations ( false );
settings.endGroup();
+
+ // -- propertyObject event filter delegation
+ // This method changes the properties, which will automatically trigger the
+ // QEvent::DynamicPropertyChange
+ // This in turns will call eventFilter each time
+ // As the settings group is opened, it will generate nested beginGroup
+ // Therefore the event filter should only be installed at the end,
+ // when all properties are set.
+
+ // propertyObject is monitored by the 3D viewer instance (this) when its properties change
+ // All event filter on the property object are delegated to the InteractiveViewer class
+ // @see eventFilter()
+ if(myType == GEOMETRY_VIEWER) {
+ propertyObject->installEventFilter(this);
+ // trigger change for all the values
+ eventFilter(this,new QEvent(QEvent::DynamicPropertyChange));
+ }
+
+
}
// ---------------------- getWidget ----------------------------
@@ -414,7 +454,7 @@ QWidget * InteractiveViewer::getWidget ( QWidget * parent ) {
// ---------------------- getPropertyObject ----------------------------
QObject * InteractiveViewer::getPropertyObject() {
if ( myType == GEOMETRY_VIEWER )
- return this;
+ return propertyObject;
else
return NULL;
}
@@ -436,7 +476,7 @@ void InteractiveViewer::refresh ( Viewer * v ) {
if ( !frame )
return;
- //-- first removed non active Component (if InteractiveViewer was called by itself, no need to do that)
+ //-- first remove non active Component (if InteractiveViewer was called by itself, no need to do that)
if ( v != this ) {
//-- check all present
QList<Component*> compRendered = actorMap.keys();
@@ -465,6 +505,7 @@ void InteractiveViewer::refresh ( Viewer * v ) {
updateSelectionDisplay ( comp );
//-- check the line as tube representation
+ bool linesAsTubes = propertyObject->property(linesAsTubesProperty->getName().toStdString().c_str()).toBool();
if ( linesAsTubes )
comp->setLinesAsTubes ( linesAsTubes );
@@ -484,8 +525,8 @@ void InteractiveViewer::refresh ( Viewer * v ) {
}
}
}
- if (comp->getFrameVisibility(this)) {
- addActor(comp, comp->getFrameAxisActor());
+ if ( comp->getFrameVisibility ( this ) ) {
+ addActor ( comp, comp->getFrameAxisActor() );
}
}
@@ -556,8 +597,9 @@ void InteractiveViewer::refresh ( Viewer * v ) {
//-- see if there was some added/removed top-level component
if ( displayedTopLevelComponents == ( unsigned ) Application::getTopLevelComponents().size() ) {
rendererWidget->updateAxes();
- // reset camera only if in a slicer view
- if (myType == SLICE_VIEWER)
+
+ // refresh only camera on slice viewer which are not being picked or geometry viewer which needs additional refresh
+ if( ( (myType == SLICE_VIEWER) && !isPicking ) )
resetCamera();
rendererWidget->refresh();
} else {
@@ -606,8 +648,8 @@ QMenu * InteractiveViewer::getMenu() {
options->addAction ( backgroundColorAction );
options->addAction ( toggleCopyrightAction );
options->addAction ( toggleAxesAction );
- if (myType == SLICE_VIEWER)
- options->addAction( toggleOrientationDecorationsAction );
+ if ( myType == SLICE_VIEWER )
+ options->addAction ( toggleOrientationDecorationsAction );
// AxesView mode
QMenu * cameraOrientationMenu = new QMenu ( "Camera Orientation" );
@@ -681,12 +723,15 @@ QToolBar * InteractiveViewer::getToolBar() {
if ( colorAction )
viewerToolBar->addAction ( colorAction );
+ // TODO : finish this action
+ //viewerToolBar->addAction( scalarDataColorAction );
+
viewerToolBar->addAction ( glyphAction );
viewerToolBar->addAction ( toggleLabelAction );
viewerToolBar->addSeparator();
viewerToolBar->addAction ( toggleAxesAction );
- if (myType == SLICE_VIEWER)
- viewerToolBar->addAction( toggleOrientationDecorationsAction );
+ if ( myType == SLICE_VIEWER )
+ viewerToolBar->addAction ( toggleOrientationDecorationsAction );
viewerToolBar->addAction ( screenshotAction );
}
@@ -736,6 +781,9 @@ void InteractiveViewer::initActions() {
else
colorAction = NULL;
+ scalarDataColorAction = new QWidgetAction(this);
+ scalarDataColorAction->setDefaultWidget(scalarDataComboBox);
+
glyphAction = new QAction ( QPixmap ( ":/showGlyph" ), tr ( "Show/Hide &Glyph" ), this );
glyphAction->setCheckable ( true );
glyphAction->setStatusTip ( tr ( "Show/hide point glyph" ) );
@@ -750,7 +798,7 @@ void InteractiveViewer::initActions() {
// -- display mode
QActionGroup *displayGrp = new QActionGroup ( this );
- connect ( displayGrp, SIGNAL ( selected ( QAction* ) ), this, SLOT ( highlightModeChanged ( QAction* ) ) );
+ connect ( displayGrp, SIGNAL ( triggered ( QAction* ) ), this, SLOT ( highlightModeChanged ( QAction* ) ) );
highlightSelectionAction = new QAction ( tr ( "&Selection" ), displayGrp );
highlightSelectionAction->setCheckable ( true );
@@ -770,7 +818,7 @@ void InteractiveViewer::initActions() {
//-- camera mode
QActionGroup *cameraModeGrp = new QActionGroup ( this );
- connect ( cameraModeGrp, SIGNAL ( selected ( QAction* ) ), this, SLOT ( viewControlModeChanged ( QAction* ) ) );
+ connect ( cameraModeGrp, SIGNAL ( triggered ( QAction* ) ), this, SLOT ( viewControlModeChanged ( QAction* ) ) );
controlModeTrackballAction = new QAction ( tr ( "&Trackball" ), cameraModeGrp );
controlModeTrackballAction->setCheckable ( true );
@@ -786,7 +834,7 @@ void InteractiveViewer::initActions() {
//-- camera orientation mode
QActionGroup *cameraOrientationGrp = new QActionGroup ( this );
- connect ( cameraOrientationGrp, SIGNAL ( selected ( QAction* ) ), this, SLOT ( cameraOrientationChanged ( QAction* ) ) );
+ connect ( cameraOrientationGrp, SIGNAL ( triggered ( QAction* ) ), this, SLOT ( cameraOrientationChanged ( QAction* ) ) );
cameraOrientationRightDownAction = new QAction ( tr ( "x-right y-down z-back" ), cameraOrientationGrp );
cameraOrientationRightDownAction->setCheckable ( true );
@@ -810,6 +858,7 @@ void InteractiveViewer::initActions() {
backgroundColorAction = new QAction ( tr ( "Background &Color" ), this );
backgroundColorAction->setStatusTip ( tr ( "Change background color" ) );
backgroundColorAction->setWhatsThis ( tr ( "Change the color background of the InteractiveViewer" ) );
+
connect ( backgroundColorAction, SIGNAL ( triggered() ), this, SLOT ( backgroundColor() ) );
toggleCopyrightAction = new QAction ( tr ( "Show &Copyright Text" ), this );
@@ -825,32 +874,34 @@ void InteractiveViewer::initActions() {
toggleAxesAction->setWhatsThis ( tr ( "Display the coordinate axes of the InteractiveViewer" ) );
connect ( toggleAxesAction, SIGNAL ( toggled ( bool ) ), this, SLOT ( toggleAxes ( bool ) ) );
- if (myType == SLICE_VIEWER) {
- toggleOrientationDecorationsAction = new QAction ( tr (" Show Slice Orientation Decoration"), this);
- toggleOrientationDecorationsAction->setCheckable(true);
- toggleOrientationDecorationsAction->setStatusTip(tr("Display Slice Orientation Information (Right, Left, Anterior, Posterior, Superior, Inferior"));
- toggleOrientationDecorationsAction->setWhatsThis(tr("Display Slice Orientation Information (Right, Left, Anterior, Posterior, Superior, Inferior"));
- connect (toggleOrientationDecorationsAction, SIGNAL(toggled(bool)), this, SLOT (toggleOrientationDecorations(bool)));
+ if ( myType == SLICE_VIEWER ) {
+ toggleOrientationDecorationsAction = new QAction ( tr ( " Show Slice Orientation Decoration" ), this );
+ toggleOrientationDecorationsAction->setCheckable ( true );
+ toggleOrientationDecorationsAction->setStatusTip ( tr ( "Display Slice Orientation Information (Right, Left, Anterior, Posterior, Superior, Inferior" ) );
+ toggleOrientationDecorationsAction->setWhatsThis ( tr ( "Display Slice Orientation Information (Right, Left, Anterior, Posterior, Superior, Inferior" ) );
+ connect ( toggleOrientationDecorationsAction, SIGNAL ( toggled ( bool ) ), this, SLOT ( toggleOrientationDecorations ( bool ) ) );
}
if ( myType == GEOMETRY_VIEWER ) {
toggleLinesAsTubesAction = new QAction ( tr ( "Show Lines as Tubes" ), this );
toggleLinesAsTubesAction->setCheckable ( true );
- toggleLinesAsTubesAction->setChecked ( getLinesAsTubes() );
+
+ toggleLinesAsTubesAction->setChecked (propertyObject->property(linesAsTubesProperty->getName().toStdString().c_str()).toBool());
toggleLinesAsTubesAction->setStatusTip ( tr ( "Display the lines - if in a vtkDataSet - as tubes" ) );
toggleLinesAsTubesAction->setWhatsThis ( tr ( "Display the lines - if in a vtkDataSet - as tubes" ) );
connect ( toggleLinesAsTubesAction, SIGNAL ( toggled ( bool ) ), this, SLOT ( setLinesAsTubes ( bool ) ) );
toggleBackfaceCullingAction = new QAction ( tr ( "&Backface Culling" ), this );
toggleBackfaceCullingAction->setCheckable ( true );
- toggleBackfaceCullingAction->setChecked ( getBackfaceCulling() );
+ bool backfaceCulling = propertyObject->property(backfaceCullingProperty->getName().toStdString().c_str()).toBool();
+ toggleBackfaceCullingAction->setChecked ( backfaceCulling );
toggleBackfaceCullingAction->setStatusTip ( tr ( "Set cull face on/off\nIf backface culling is on, polygons facing away from camera are not drawn." ) );
toggleBackfaceCullingAction->setWhatsThis ( tr ( "Set cull face on/off\nIf backface culling is on, polygons facing away from camera are not drawn." ) );
connect ( toggleBackfaceCullingAction, SIGNAL ( toggled ( bool ) ), this, SLOT ( setBackfaceCulling ( bool ) ) );
//--- actions of the picking menu
QActionGroup *pickingGrp = new QActionGroup ( this );
- connect ( pickingGrp, SIGNAL ( selected ( QAction* ) ), this, SLOT ( pickingModeChanged ( QAction* ) ) );
+ connect ( pickingGrp, SIGNAL ( triggered ( QAction* ) ), this, SLOT ( pickingModeChanged ( QAction* ) ) );
pickCellAction = new QAction ( QPixmap ( ":/pick_cell" ), tr ( "Pick &cell" ), pickingGrp );
pickCellAction->setCheckable ( true );
@@ -1256,7 +1307,7 @@ void InteractiveViewer::keyPressEvent ( QKeyEvent* e ) {
while ( i < c->getNumberOfProp() && c->getProp ( i ) != p )
i++;
if ( i==c->getNumberOfProp() )
- debugStream << "\t- Unknow prop" << endl;
+ debugStream << "\t- Unknown Prop" << endl;
else
debugStream << "\t- Additional Prop #" << i << endl;
}
@@ -1403,17 +1454,12 @@ void InteractiveViewer::zAngleChanged ( double angle ) {
//--------------------- setGradientBackground --------------
void InteractiveViewer::setGradientBackground ( bool g ) {
- rendererWidget->setGradientBackground ( g );
- rendererWidget->refresh();
- QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
- settings.setValue ( "gradientBackground", g );
- settings.endGroup();
+ propertyObject->setProperty(backgroundGradientColorProperty->getName().toStdString().c_str(), g);
}
-//--------------------- getGradientBackground --------------
-bool InteractiveViewer::getGradientBackground() const {
- return rendererWidget->getGradientBackground();
+// --------------- setBackgroundColor --------------------
+void InteractiveViewer::setBackgroundColor ( QColor c ) {
+ propertyObject->setProperty(backgroundColorProperty->getName().toStdString().c_str(), c);
}
//--------------------- getBounds -------------------
@@ -1488,7 +1534,7 @@ void InteractiveViewer::toggleInterpolation() {
void InteractiveViewer::updateSelectionDisplay ( Component *comp ) {
InterfaceGeometry::EnhancedModes m = InterfaceGeometry::Normal;
- switch ( highlightMode ) { //set the option for the item(s) not selected
+ switch ( (HighlightMode) propertyObject->property(highlightModeProperty->getName().toStdString().c_str()).toInt() ) { //set the option for the item(s) not selected
case InteractiveViewer::SELECTION:
// nobody is highlighted
@@ -1582,7 +1628,7 @@ void InteractiveViewer::screenshot() {
}
// ask the user
- QString filename = QFileDialog::getSaveFileName ( NULL, tr ( "Save Screenshot As.." ), " / home", filter );
+ QString filename = QFileDialog::getSaveFileName ( NULL, tr ( "Save Screenshot As.." ), "", filter );
if ( !filename.isEmpty() ) {
screenshot ( filename );
@@ -1627,12 +1673,14 @@ void InteractiveViewer::updateActions() {
pointsAction->blockSignals ( true );
glyphAction->blockSignals ( true );
toggleLabelAction->blockSignals ( true );
+ scalarDataColorAction->blockSignals( true );
surfaceAction->setEnabled ( true );
wireframeAction->setEnabled ( true );
pointsAction->setEnabled ( true );
glyphAction->setEnabled ( true );
toggleLabelAction->setEnabled ( true );
+ scalarDataColorAction->setEnabled( false );
if ( colorAction )
colorAction->setEnabled ( true );
@@ -1660,6 +1708,14 @@ void InteractiveViewer::updateActions() {
pointsAction->setChecked ( first->getRenderingModes() & InterfaceGeometry::Points );
glyphAction->setChecked ( Application::getSelectedComponents().first()->getProp ( "glyph" )->GetVisibility() );
toggleLabelAction->setChecked ( Application::getSelectedComponents().first()->getProp ( "label" )->GetVisibility() );
+
+ MeshComponent* mesh = dynamic_cast< MeshComponent* >(first);
+ if (mesh) {
+ // active scalar data colors and populate combobox with scalar data from the component
+ scalarDataColorAction->setEnabled( true );
+ scalarDataModel->setSourceModel(mesh->getDataModel());
+ }
+
} else {
surfaceAction->setEnabled ( false );
wireframeAction->setEnabled ( false );
@@ -1709,6 +1765,7 @@ void InteractiveViewer::updateActions() {
pointsAction->blockSignals ( false );
glyphAction->blockSignals ( false );
toggleLabelAction->blockSignals ( false );
+ scalarDataColorAction->blockSignals( false );
if ( viewerMenu ) {
renderingMenu->setEnabled ( Application::getSelectedComponents().size() > 0 );
@@ -1739,25 +1796,25 @@ void InteractiveViewer::renderingActorsChanged() {
// --------------- setHighlightMode --------------------
void InteractiveViewer::setHighlightMode ( InteractiveViewer::HighlightMode h ) {
- highlightMode = h;
+ HighlightMode highlightMode = (HighlightMode) propertyObject->property(highlightModeProperty->getName().toStdString().c_str()).toInt();
refresh ( this );
QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
+ settings.beginGroup ( Application::getName() + ".InteractiveViewer." + objectName().simplified().replace(" ",""));
settings.setValue ( "highlightMode", highlightMode );
settings.endGroup();
}
-// --------------- getHighlightMode --------------------
-InteractiveViewer::HighlightMode InteractiveViewer::getHighlightMode() const {
- return highlightMode;
-}
+//// --------------- getHighlightMode --------------------
+//InteractiveViewer::HighlightMode InteractiveViewer::getHighlightMode() const {
+// return highlightMode;
+//}
// --------------- slotHighlightModeChanged -----------------------------------
void InteractiveViewer::highlightModeChanged ( QAction *selectedAction ) {
if ( selectedAction == highlightSelectionAction ) {
- highlightMode = InteractiveViewer::SELECTION;
+ propertyObject->setProperty(highlightModeProperty->getName().toStdString().c_str(), InteractiveViewer::SELECTION);
} else if ( selectedAction == highlightSelectionOnlyAction ) {
- highlightMode = InteractiveViewer::SELECTION_ONLY;
+ propertyObject->setProperty(highlightModeProperty->getName().toStdString().c_str(), InteractiveViewer::SELECTION_ONLY);
} else
/*
@@ -1767,7 +1824,7 @@ void InteractiveViewer::highlightModeChanged ( QAction *selectedAction ) {
else
*/
if ( selectedAction == highlightOffAction ) {
- highlightMode = InteractiveViewer::OFF;
+ propertyObject->setProperty(highlightModeProperty->getName().toStdString().c_str(), InteractiveViewer::OFF);
}
refresh ( this );
@@ -1790,7 +1847,7 @@ void InteractiveViewer::cameraOrientationChanged ( QAction *selectedAction ) {
}
QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
+ settings.beginGroup ( Application::getName() + ".InteractiveViewer." + objectName().simplified().replace(" ",""));
settings.setValue ( "cameraOrientation", rendererWidget->getCameraOrientation() );
refresh ( this );
settings.endGroup();
@@ -1804,35 +1861,14 @@ void InteractiveViewer::viewControlModeChanged ( QAction * selectedAction ) {
rendererWidget->setControlMode ( RendererWidget::JOYSTICK );
}
-// --------------- setBackgroundColor --------------------
-void InteractiveViewer::setBackgroundColor ( QColor c ) {
- rendererWidget->setBackgroundColor ( c.redF(), c.greenF(), c.blueF() );
- rendererWidget->refresh();
- QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
- settings.setValue ( "backgroundColor", c );
- settings.endGroup();
-}
-
-// --------------- getBackgroundColor --------------------
-QColor InteractiveViewer::getBackgroundColor() const {
- QColor c;
- double r, g, b;
- rendererWidget->getBackgroundColor ( r, g, b );
- c.setRgbF ( r, g, b );
- return c;
-}
-
// ------------- slotBackgroundColor -----------------
void InteractiveViewer::backgroundColor() {
- QColor oldColor = getBackgroundColor();
+ QColor oldColor = propertyObject->property(backgroundColorProperty->getName().toStdString().c_str()).value<QColor>();
QColor newColor = QColorDialog::getColor ( oldColor );
if ( newColor.isValid() ) {
- setBackgroundColor ( newColor );
+ propertyObject->setProperty(backgroundColorProperty->getName().toStdString().c_str(), newColor);
}
-
- rendererWidget->refresh();
}
// ------------- slotToggleAxes -----------------
@@ -1843,8 +1879,8 @@ void InteractiveViewer::toggleAxes ( bool f ) {
}
// ------------- toggleOrientationDecorations -----------------
-void InteractiveViewer::toggleOrientationDecorations( bool f ) {
- if (myType == SLICE_VIEWER) {
+void InteractiveViewer::toggleOrientationDecorations ( bool f ) {
+ if ( myType == SLICE_VIEWER ) {
rendererWidget->toggleOrientationDecorations ( f );
rendererWidget->refresh();
}
@@ -1880,59 +1916,24 @@ void InteractiveViewer::setGlyph ( bool b ) {
// ------------- setLinesAsTubes -----------------
void InteractiveViewer::setLinesAsTubes ( bool tubes ) {
- linesAsTubes = tubes;
- QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
- settings.setValue ( "linesAsTubes", linesAsTubes );
- settings.endGroup();
- refresh ( this );
-}
-
-// ------------- getLinesAsTubes -----------------
-bool InteractiveViewer::getLinesAsTubes() const {
- return linesAsTubes;
+ propertyObject->setProperty(linesAsTubesProperty->getName().toStdString().c_str(), tubes);
}
// -------------- setBackfaceCulling --------------
void InteractiveViewer::setBackfaceCulling ( bool b ) {
- rendererWidget->setBackfaceCulling ( b );
- rendererWidget->refresh();
- QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
- settings.setValue ( "backfaceCulling", b );
- settings.endGroup();
-}
-
-// -------------- getBackfaceCulling --------------
-bool InteractiveViewer::getBackfaceCulling() const {
- return rendererWidget->getBackfaceCulling();
-}
-
-// ------------- setPointSize -----------------
-void InteractiveViewer::setPointSize ( double ps ) {
- rendererWidget->setPointSize ( ps );
- rendererWidget->refresh();
- QSettings & settings = Application::getSettings();
- settings.beginGroup ( Application::getName().simplified() + ".InteractiveViewer." + objectName().simplified() );
- settings.setValue ( "pointSize", ps );
- settings.endGroup();
-}
-
-// ------------- getPointSize -----------------
-double InteractiveViewer::getPointSize() const {
- return rendererWidget->getPointSize();
+ propertyObject->setProperty(backfaceCullingProperty->getName().toStdString().c_str(), b);
}
//-------------------- slotPickingModeChanged ---------------------
void InteractiveViewer::pickingModeChanged ( QAction *selectedAction ) {
if ( selectedAction == pickCellAction ) {
- initPicking(CELL_PICKING);
+ initPicking ( CELL_PICKING );
} else if ( selectedAction == pickPointAction ) {
- initPicking(POINT_PICKING);
+ initPicking ( POINT_PICKING );
} else if ( selectedAction == pickCellRegionAction ) {
- initPicking(AREA_CELL_PICKING);
+ initPicking ( AREA_CELL_PICKING );
} else if ( selectedAction == pickPointRegionAction ) {
- initPicking(AREA_POINT_PICKING);
+ initPicking ( AREA_POINT_PICKING );
}
}
@@ -1940,7 +1941,7 @@ void InteractiveViewer::picked() {
vtkSmartPointer<vtkAbstractPropPicker> picker = vtkAbstractPropPicker::SafeDownCast ( this->rendererWidget->GetInteractor()->GetPicker() );
- if (!picker) {
+ if ( !picker ) {
pickingEffectUpdated = false;
return;
}
@@ -1953,7 +1954,7 @@ void InteractiveViewer::picked() {
return;
vtkSmartPointer<vtkPicker> itemPicker;
- if ( !pickingEffectUpdated && (itemPicker = vtkPicker::SafeDownCast(picker)) ) {
+ if ( !pickingEffectUpdated && ( itemPicker = vtkPicker::SafeDownCast ( picker ) ) ) {
pickingEffectUpdated = true;
// decide of the state: if one of the possible picked is selected, then try unselect
bool hasSelected = false;
@@ -1985,6 +1986,8 @@ void InteractiveViewer::picked() {
}
if ( pickedPlanePts != NULL && pickedPlanePts->GetNumberOfPoints() > 0 ) {
+ // picking worked
+ isPicking = true;
//-- tells the Component it's been picked in (x,y,z)
comp->pixelPicked ( pickedPlanePts->GetPoint ( pointIndex ) [0], pickedPlanePts->GetPoint ( pointIndex ) [1], pickedPlanePts->GetPoint ( pointIndex ) [2] );
@@ -1995,7 +1998,6 @@ void InteractiveViewer::picked() {
}
}
break;
-
case POINT_PICKING: {
vtkSmartPointer<vtkPointPicker> pointPicker = vtkPointPicker::SafeDownCast ( picker );
if ( pointPicker ) {
@@ -2015,7 +2017,7 @@ void InteractiveViewer::picked() {
// pointPicked can have changed something
MeshComponent* mesh = dynamic_cast<MeshComponent*> ( comp );
if ( mesh ) {
- mesh->addToSelection ( "Selected Points", ids );
+ mesh->addToSelectedSelection ( vtkSelectionNode::POINT, vtkSelectionNode::INDICES, ids );
}
refresh ( this );
emit selectionChanged();
@@ -2037,77 +2039,46 @@ void InteractiveViewer::picked() {
Application::showStatusBarMessage ( "Picked : " + comp->getName() + ", Cell#" + QString::number ( currentId ) );
// cellPicked can have change something
- mesh->addToSelection ( "Selected Cells", ids );
+ mesh->addToSelectedSelection ( vtkSelectionNode::CELL, vtkSelectionNode::INDICES, ids );
refresh ( this );
emit selectionChanged();
}
}
- break;
}
+ break;
case AREA_CELL_PICKING : {
vtkSmartPointer<vtkRenderedAreaPicker> areaPicker = vtkRenderedAreaPicker::SafeDownCast ( this->rendererWidget->GetInteractor()->GetPicker() );
MeshComponent* mesh = dynamic_cast<MeshComponent*> ( comp );
if ( areaPicker && mesh ) {
- // old stuff using vtkHardwareSelector but it work only on polydata
- // and it is dependent on the graphics card (beurkk)
- // So we use frustum selection
- /*
- vtkSmartPointer<vtkRenderer> ren = rendererWidget->GetInteractor()->GetRenderWindow()->GetRenderers()->GetFirstRenderer();
- vtkSmartPointer<vtkHardwareSelector> hSel = vtkSmartPointer<vtkHardwareSelector>::New();
- hSel->SetRenderer ( ren );
-
- double x0 = ren->GetPickX1();
- double y0 = ren->GetPickY1();
- double x1 = ren->GetPickX2();
- double y1 = ren->GetPickY2();
-
- hSel->SetArea ( static_cast<int> ( x0 ),static_cast<int> ( y0 ),static_cast<int> ( x1 ),
- static_cast<int> ( y1 ) );
- hSel->SetFieldAssociation ( vtkDataObject::FIELD_ASSOCIATION_CELLS );
- vtkSmartPointer<vtkSelection> res;
- res.TakeReference ( hSel->Select() );
- if ( !res ) {
- cerr << "Selection not supported." << endl;
- }
- vtkSmartPointer<vtkSelectionNode> cellids = res->GetNode ( 0 );
- if ( cellids ) {
- mesh->addToSelection ( "Selected Cells", cellids->GetSelectionList() );
- refresh ( this );
- emit selectionChanged();
- }
- */
vtkSmartPointer<vtkExtractSelectedFrustum> extractor = vtkSmartPointer<vtkExtractSelectedFrustum>::New();
- vtkSmartPointer<vtkSelection> sel = vtkSmartPointer<vtkSelection>::New();
- vtkSmartPointer<vtkSelectionNode> selNode = vtkSmartPointer<vtkSelectionNode>::New();
- extractor->SetInput ( mesh->getPointSet() );
+ extractor->SetInputData( mesh->getPointSet() );
extractor->PreserveTopologyOff();
extractor->SetFrustum ( areaPicker->GetFrustum() );
extractor->Update();
vtkDataSet* dataSet = vtkDataSet::SafeDownCast ( extractor->GetOutput() );
if ( dataSet ) {
Application::showStatusBarMessage ( "Picked : " + comp->getName() + " (" + QString::number ( dataSet->GetCellData()->GetArray ( 0 )->GetNumberOfTuples() ) + " cells )" );
- mesh->addToSelection ( "Selected Cells", dataSet->GetCellData()->GetArray ( 0 ) );
+ mesh->addToSelectedSelection ( vtkSelectionNode::CELL, vtkSelectionNode::INDICES, dataSet->GetCellData()->GetArray ( 0 ) );
refresh ( this );
emit selectionChanged();
}
}
- break;
}
+ break;
case AREA_POINT_PICKING : {
vtkSmartPointer<vtkRenderedAreaPicker> areaPicker = vtkRenderedAreaPicker::SafeDownCast ( this->rendererWidget->GetInteractor()->GetPicker() );
MeshComponent* mesh = dynamic_cast<MeshComponent*> ( comp );
if ( areaPicker && mesh ) {
vtkSmartPointer<vtkExtractSelectedFrustum> extractor = vtkSmartPointer<vtkExtractSelectedFrustum>::New();
- vtkSmartPointer<vtkSelection> sel = vtkSmartPointer<vtkSelection>::New();
- vtkSmartPointer<vtkSelectionNode> selNode = vtkSmartPointer<vtkSelectionNode>::New();
- extractor->SetInput ( mesh->getPointSet() );
+ extractor->SetInputData( mesh->getPointSet() );
extractor->PreserveTopologyOff();
extractor->SetFrustum ( areaPicker->GetFrustum() );
+ extractor->SetFieldType( vtkSelection::POINT);
extractor->Update();
vtkDataSet* dataSet = vtkDataSet::SafeDownCast ( extractor->GetOutput() );
if ( dataSet ) {
Application::showStatusBarMessage ( "Picked : " + comp->getName() + " (" + QString::number ( dataSet->GetPointData()->GetArray ( 0 )->GetNumberOfTuples() ) + " points )" );
- mesh->addToSelection ( "Selected Points", dataSet->GetPointData()->GetArray ( 0 ) );
+ mesh->addToSelectedSelection ( vtkSelectionNode::POINT, vtkSelectionNode::INDICES, dataSet->GetPointData()->GetArray ( 0 ) );
refresh ( this );
emit selectionChanged();
}
@@ -2118,6 +2089,8 @@ void InteractiveViewer::picked() {
default :
break;
}
+ isPicking = false;
+ comp = NULL;
}
//-------------------- rightClick ---------------------
@@ -2132,6 +2105,96 @@ void InteractiveViewer::rightClick() {
}
+//-------------------- createProperties ---------------------
+void InteractiveViewer::createProperties() {
+
+ propertyObject = new PropertyObject(getName());
+
+ // 3D Viewer properties
+ // highlight mode
+ highlightModeProperty = new Property("Highlight Mode", InteractiveViewer::SELECTION,
+ "Select the highlight mode for selecting components. \n OFF: both selected and non-selected Components are in default mode \n SELECTION: the selected Components are in default mode, the non-selected Components are shaded \n ELECTION_ONLY: the selected Components are in default mode, the non-selected are hidden", "");
+ highlightModeProperty->setEnumTypeName("camitk::InteractiveViewer::HighlightMode");
+ QStringList highlightModeNames;
+ highlightModeNames << "Off" << "Selection" << "Selection only";
+ highlightModeProperty->setAttribute("enumNames", highlightModeNames);
+ propertyObject->addProperty(highlightModeProperty);
+
+ // background color
+ backgroundColorProperty = new Property("Background color", QColor(255, 255, 255), "The background color of this viewer.", "");
+ propertyObject->addProperty(backgroundColorProperty);
+
+ // background color property
+ backgroundGradientColorProperty = new Property("Use a background gradient color?", true, "Does this viewer use a gradient to render its background color?", "");
+ propertyObject->addProperty(backgroundGradientColorProperty);
+
+ // lines as tubes property
+ linesAsTubesProperty = new Property("Lines considered as tube?", false, "Does this viewer replace drawn lines as tubes?", "" );
+ propertyObject->addProperty(linesAsTubesProperty);
+
+ // backface culling property
+ backfaceCullingProperty = new Property("Backface culling", false, "Compute the non visible polygons and display them?", "");
+ propertyObject->addProperty(backfaceCullingProperty);
+
+ // point size property
+ pointSizeProperty = new Property("Point size?", 4.0, "The 3D point size of each node", "");
+ propertyObject->addProperty(pointSizeProperty);
+
+}
+
+// ---------------- eventFilter ----------------
+bool InteractiveViewer::eventFilter(QObject *object, QEvent *event) {
+ // watch propertyObject instance for dynamic property changes
+ if(event->type() == QEvent::DynamicPropertyChange) {
+ // first perform the proper action
+ // and then save the settings accordingly
+
+ // highlight mode update
+ HighlightMode highlightMode = (HighlightMode) propertyObject->property(highlightModeProperty->getName().toStdString().c_str()).toInt();
+
+ // background color update
+ QColor backgroundColor = propertyObject->property(backgroundColorProperty->getName().toStdString().c_str()).value<QColor>();
+ rendererWidget->setBackgroundColor(backgroundColor.redF(), backgroundColor.greenF(), backgroundColor.blueF());
+
+ // background gradient color
+ bool useGradientBackgroundColor = propertyObject->property(backgroundGradientColorProperty->getName().toStdString().c_str()).toBool();
+ rendererWidget->setGradientBackground (useGradientBackgroundColor);
+
+ // lines as tubes
+ bool linesAsTubes = propertyObject->property(linesAsTubesProperty->getName().toStdString().c_str()).toBool();
+
+ // backface culling
+ bool backfaceCulling = propertyObject->property(backfaceCullingProperty->getName().toStdString().c_str()).toBool();
+ rendererWidget->setBackfaceCulling ( backfaceCulling );
+
+ // point size
+ double pointSize = propertyObject->property(pointSizeProperty->getName().toStdString().c_str()).toDouble();
+ rendererWidget->setPointSize ( pointSize );
+
+ // ..and finally refresh
+ refresh(this);
+ rendererWidget->refresh();
+
+ // save the settings
+ QSettings &settings = Application::getSettings();
+ settings.beginGroup(Application::getName() + ".InteractiveViewer." + objectName().simplified().replace(" ",""));
+
+ settings.setValue("highlightMode", highlightMode );
+ settings.setValue("backgroundColor", backgroundColor.name() );
+ settings.setValue ("gradientBackground", useGradientBackgroundColor);
+ settings.setValue ( "linesAsTubes", linesAsTubes );
+ settings.setValue ( "backfaceCulling", backfaceCulling );
+ settings.setValue ( "pointSize", pointSize );
+
+ settings.endGroup();
+
+ return true;
+ } else {
+ // pass the event on to the parent class
+ return Viewer::eventFilter(object, event);
+ }
+
+}
//--------------------------------------------------------------
@@ -2145,6 +2208,12 @@ void InteractiveViewerFrame::keyPressEvent ( QKeyEvent* e ) {
QWidget::keyPressEvent ( e );
}
+// keep this include here (in the namespace camitk) as long as
+// CMake automoc generates a camitk namespace error on this moc
+// for the RendererWidget member of the InteractiveViewer class.
+// By including it, the file kept out library-camitkcore_automoc.cpp
+#include "moc_InteractiveViewer.cpp"
+
}
diff --git a/sdk/libraries/core/viewer/InteractiveViewer.h b/sdk/libraries/core/viewer/InteractiveViewer.h
index fc1263f..3a1801d 100644
--- a/sdk/libraries/core/viewer/InteractiveViewer.h
+++ b/sdk/libraries/core/viewer/InteractiveViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -31,6 +31,7 @@
#include "CamiTKAPI.h"
#include "Component.h"
#include "Viewer.h"
+#include "RendererWidget.h"
//-- QT stuff
#include <QFrame>
@@ -52,12 +53,14 @@ class vtkEventQtSlotConnect;
namespace camitk {
// -- Core stuff classes
-class RendererWidget;
class SliderSpinBoxWidget;
class GeometricObject;
class InterfaceGeometry;
class InterfaceBitMap;
class InteractiveViewer;
+class MeshDataFilterModel;
+class PropertyObject;
+class Property;
typedef vtkSmartPointer<vtkCamera> vtkSmartPointerCamera;
@@ -65,7 +68,7 @@ typedef vtkSmartPointer<vtkCamera> vtkSmartPointerCamera;
class InteractiveViewerFrame : public QFrame {
public:
/// default constructor
- InteractiveViewerFrame ( QWidget* parent, InteractiveViewer* s3D ) : QFrame ( parent ), myInteractiveViewer ( s3D ) {};
+ InteractiveViewerFrame ( QWidget* parent, InteractiveViewer* s3D ) : QFrame ( parent ), myInteractiveViewer ( s3D ) {}
/// Handle keyboard events in the scene frame, just send everything to InteractiveViewer!
void keyPressEvent ( QKeyEvent* );
@@ -78,8 +81,7 @@ protected:
* @ingroup group_sdk_libraries_core_viewer
*
* @brief
- * InteractiveViewer is used to view 3D objects and slices (anything that provides either a InterfaceBitMap
- * or a InterfaceGeometry).
+ * InteractiveViewer is used to view 3D objects and slices (anything that provides either a InterfaceBitMap or a InterfaceGeometry).
*
* It contains a renderer (class RendererWidget) that combines VTK and QT.
* The RendererWidget instance manage all the display at the VTK level.
@@ -137,12 +139,6 @@ protected:
class CAMITK_API InteractiveViewer : public Viewer {
Q_OBJECT
Q_ENUMS ( HighlightMode RendererWidget::ControlMode RendererWidget::CameraOrientation ) // so that it can be used in property editor
- Q_PROPERTY ( HighlightMode highlightMode READ getHighlightMode WRITE setHighlightMode )
- Q_PROPERTY ( QColor backgroundColor READ getBackgroundColor WRITE setBackgroundColor )
- Q_PROPERTY ( bool gradientBackground READ getGradientBackground WRITE setGradientBackground )
- Q_PROPERTY ( bool linesAsTubes READ getLinesAsTubes WRITE setLinesAsTubes )
- Q_PROPERTY ( bool backfaceCulling READ getBackfaceCulling WRITE setBackfaceCulling )
- Q_PROPERTY ( double pointSize READ getPointSize WRITE setPointSize )
public:
/// \enum ViewerType there is two possibilities: this InteractiveViewer is used to display slices or geometry
@@ -184,7 +180,7 @@ public:
static InteractiveViewer * getNewViewer ( QString , ViewerType type );
/// get a viewer by its name (return NULL if no instance has the given name, use getNewViewer to create one viewer)
- static InteractiveViewer *getViewer ( QString );
+ static InteractiveViewer * getViewer ( QString );
/// get the 3D viewer default InteractiveViewer (provided for convenience, equivalent to getViewer("3DViewer")
static InteractiveViewer * get3DViewer();
@@ -256,30 +252,23 @@ public slots:
void screenshot();
/// @}
- /** @name Viewing/Interaction Property
- */
- ///@{
-
public:
/// set gradient background on/off
virtual void setGradientBackground ( bool );
- /// get the current background gradient mode.
- bool getGradientBackground() const;
-
/// set background color
virtual void setBackgroundColor ( QColor );
- /// get the background color
- QColor getBackgroundColor() const;
-
+ /** @name Viewing/Interaction Property
+ */
+ ///@{
public slots:
/// set the backface culling mode (default is true).
void setBackfaceCulling ( bool );
public:
/// get the backface current culling mode.
- bool getBackfaceCulling() const;
+ // bool getBackfaceCulling() const;
public slots:
/** Update the visualization of lines (for all the InterfaceGeometry of the scene).
@@ -295,27 +284,9 @@ public:
/// Handle keyboard events in the scene, let to the parent widget if not processed here. This method is a friend of class InteractiveViewerFrame
void keyPressEvent ( QKeyEvent* e );
- /// get the boolean indicating if the lines are currently set to be displayed as tubes.
- bool getLinesAsTubes() const;
-
- /** update the visualization of points (for all object3D in the scene).
- *
- * This property acts directly on the actor, thus it can be changed outside the InterfaceGeometry,
- * thus the InterfaceGeometry should not be aware of its value (no method should be concerned with
- * this property)
- *
- */
- void setPointSize ( double size );
-
- /// get the current point size value
- double getPointSize() const;
-
/// Set the current highlighting mode.
virtual void setHighlightMode ( InteractiveViewer::HighlightMode );
- /// Return the current highlighting mode.
- InteractiveViewer::HighlightMode getHighlightMode() const;
-
/// return interactiveViewer RendererWidget
inline RendererWidget * getRendererWidget() {
return rendererWidget;
@@ -413,15 +384,9 @@ protected:
/// type of InteractiveViewer (display slice or geometry)
ViewerType myType;
- /// Are lines currently displayed as tubes (the actors have to add a vtkTubeFilter between the source and the mapper)
- bool linesAsTubes;
-
/// for InterfaceBitMap, toggle the interpolation mode (intern method, not a property because it can only be modified by the keyboard interaction)
void toggleInterpolation();
- /// keep the value of the hightlight mode
- HighlightMode highlightMode;
-
/// Update the display of the given Component, according to its selection state and the current HighlightMode.
void updateSelectionDisplay ( Component * );
@@ -466,6 +431,11 @@ protected:
/// the QToolBar for the InteractiveViewer
QToolBar *viewerToolBar;
+ /// the ComboBox for mesh scalar data
+ QComboBox* scalarDataComboBox;
+
+ MeshDataFilterModel* scalarDataModel;
+
/// init all the actions (called only once in the getWidget() method)
void initActions();
@@ -482,6 +452,7 @@ protected:
QAction *pointsAction;
QAction *colorAction;
QAction *glyphAction;
+ QWidgetAction *scalarDataColorAction;
/// display mode
QAction *highlightSelectionAction;
@@ -523,7 +494,6 @@ protected:
QAction *pickCellAction;
QAction* pickCellRegionAction;
QAction* pickPointRegionAction;
- //TODO QAction *pickRegionAction; /// to pick a region by selecting top left / bottom right corners
///@}
@@ -539,6 +509,9 @@ protected:
/** Current picking mode, NO_PICKING be default. */
PickingMode pickingMode;
+ /// Indicate that this viewer is picking.
+ bool isPicking;
+
/// picking effect while mouse button is kept pressed is selecting (depends on the selection state of the first component picked)
bool pickingEffectIsSelecting;
@@ -549,7 +522,6 @@ protected:
///@}
-
/** @name Help Whats This Utility
*/
/// @{
@@ -572,10 +544,65 @@ protected:
void addWhatsThisItem ( const QString & key, const QString & description );
/// @}
-protected slots:
- /** @name All the slots called by the menu actions
+ /**
+ * @name CamiTK Properties of this viewer
*/
///@{
+ /**
+ * The property object that holds the properties of this viewer
+ */
+ PropertyObject* propertyObject;
+
+ /**
+ * The property that stands for the type of highlight mode of the 3D viewer.
+ */
+ Property* highlightModeProperty;
+
+ /**
+ * The property that stands for the background color of the viewer.
+ */
+ Property* backgroundColorProperty;
+
+ /**
+ * Property that tells whether the viewer use a gradient background color or not.
+ */
+ Property* backgroundGradientColorProperty;
+
+ /**
+ * Property that tells whether the viewer uses lines as tubes or not.
+ */
+ Property* linesAsTubesProperty;
+
+ /**
+ * Property that tells whether the viewer uses the backface culling option or not.
+ */
+ Property* backfaceCullingProperty;
+
+ /**
+ * Property which defines the point size of each point in the 3D viewer.
+ */
+ Property* pointSizeProperty;
+
+ /**
+ * Create and handle the CamiTK properties of this viewer.
+ */
+ void createProperties();
+
+ /**
+ * Event filter of this class instance to watch its properties instances.
+ * Each time a property has dynamically changed, this method is called.
+ *
+ * @note Only used by Geometry viewers
+ */
+ bool eventFilter(QObject *object, QEvent *event);
+
+ ///@}
+
+protected slots:
+ /**
+ * @name All the slots called by the menu actions
+ */
+ ///@{
void renderingActorsChanged();
void highlightModeChanged ( QAction *selectedAction );
@@ -603,10 +630,14 @@ protected slots:
void setGlyph(bool);
///@}
+
+
+
};
}
+Q_DECLARE_METATYPE(camitk::InteractiveViewer::HighlightMode)
#endif
diff --git a/sdk/libraries/core/viewer/MedicalImageViewer.cpp b/sdk/libraries/core/viewer/MedicalImageViewer.cpp
index cf14b90..e4e1a18 100644
--- a/sdk/libraries/core/viewer/MedicalImageViewer.cpp
+++ b/sdk/libraries/core/viewer/MedicalImageViewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -165,7 +165,7 @@ QWidget * MedicalImageViewer::getWidget(QWidget * parent) {
// ---------------------- getPropertyObject ----------------------------
QObject * MedicalImageViewer::getPropertyObject() {
- return InteractiveViewer::get3DViewer();
+ return InteractiveViewer::get3DViewer()->getPropertyObject();
}
// -------------------- getMenu --------------------
@@ -192,8 +192,9 @@ QMenu * MedicalImageViewer::getMenu() {
layoutMenu->addAction(Application::getAction("Show Sagittal Viewer")->getQAction());
Application::getAction("Show Coronal Viewer")->getQAction()->setActionGroup(viewerGroup);
layoutMenu->addAction(Application::getAction("Show Coronal Viewer")->getQAction());
- Application::getAction("Show Arbitrary Viewer")->getQAction()->setActionGroup(viewerGroup);
- layoutMenu->addAction(Application::getAction("Show Arbitrary Viewer")->getQAction());
+ // disabled the arbitrary slice as long as it does not work correctly
+ // Application::getAction("Show Arbitrary Viewer")->getQAction()->setActionGroup(viewerGroup);
+ // layoutMenu->addAction(Application::getAction("Show Arbitrary Viewer")->getQAction());
for(unsigned int i=0; viewerVisibility[i]!=VIEWER_ALL; i++) {
// and viewer menu as submenu
diff --git a/sdk/libraries/core/viewer/MedicalImageViewer.h b/sdk/libraries/core/viewer/MedicalImageViewer.h
index 8e672d2..083a188 100644
--- a/sdk/libraries/core/viewer/MedicalImageViewer.h
+++ b/sdk/libraries/core/viewer/MedicalImageViewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/viewer/PropertyExplorer.cpp b/sdk/libraries/core/viewer/PropertyExplorer.cpp
index f30d092..5fce85f 100644
--- a/sdk/libraries/core/viewer/PropertyExplorer.cpp
+++ b/sdk/libraries/core/viewer/PropertyExplorer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -43,11 +43,17 @@ PropertyExplorer::PropertyExplorer() : Viewer("Property Explorer") {
revertButton = NULL;
applyButton = NULL;
currentComponent = NULL;
+
+ createProperties();
}
// ---------------- destructor ----------------
PropertyExplorer::~PropertyExplorer() {
clear();
+ if(propertyObject)
+ delete propertyObject;
+ if(viewModeProperty)
+ delete viewModeProperty;
}
//----------------------- getInstance ------------------------
@@ -125,13 +131,11 @@ QWidget * PropertyExplorer::getWidget(QWidget * parent) {
// get user pref for view mode
QSettings & settings = Application::getSettings();
settings.beginGroup("PropertyExplorer");
-
- // the background color
- ObjectController::ViewMode mode = (ObjectController::ViewMode) settings.value("viewMode", ObjectController::BUTTON).toInt();
+ ObjectController::ViewMode mode = (ObjectController::ViewMode) propertyObject->property(viewModeProperty->getName().toStdString().c_str()).toInt();
settings.endGroup();
// first the property editor
- theController = new ObjectController(propertyFrame,mode);
+ theController = new ObjectController(propertyFrame, mode);
propertyTabLayout->addWidget(theController);
// then the buttons
@@ -168,22 +172,7 @@ QWidget * PropertyExplorer::getWidget(QWidget * parent) {
// ---------------- getPropertyObject ----------------
QObject * PropertyExplorer::getPropertyObject() {
- return this;
-}
-
-
-// ---------------- getViewMode ----------------
-const ObjectController::ViewMode PropertyExplorer::getViewMode() {
- return theController->getViewMode();
-}
-
-// ---------------- setViewMode ----------------
-void PropertyExplorer::setViewMode(ObjectController::ViewMode mode) {
- theController->setViewMode(mode);
- QSettings & settings = Application::getSettings();
- settings.beginGroup("PropertyExplorer");
- settings.setValue("viewMode", mode);
- settings.endGroup();
+ return propertyObject;
}
// ---------------- clear ----------------
@@ -202,7 +191,7 @@ void PropertyExplorer::clear() {
void PropertyExplorer::selectWidget(QWidget* widget) {
// get the last component tab widgets
QWidget * customWidget;
- for (unsigned int i=0; i < this->tabWidget->count(); i++) {
+ for (int i=0; i < this->tabWidget->count(); i++) {
customWidget = this->tabWidget->widget(i);
if (customWidget && (customWidget == widget)) {
this->tabWidget->setCurrentWidget(widget);
@@ -213,7 +202,7 @@ void PropertyExplorer::selectWidget(QWidget* widget) {
// ---------------- selectIndex ----------------
void PropertyExplorer::selectIndex(unsigned int index) {
- if ((index >= 0) && (index < this->tabWidget->count()))
+ if ((index >= 0) && ((int)index < this->tabWidget->count()))
this->tabWidget->setCurrentIndex(index);
}
@@ -225,7 +214,48 @@ void PropertyExplorer::updateTabIndexToDisplay(int index) {
}
}
+// ---------------- eventFilter ----------------
+bool PropertyExplorer::eventFilter(QObject *object, QEvent *event) {
+ // watch propertyObject instance for dynamic property changes
+ if(event->type() == QEvent::DynamicPropertyChange) {
+ // objectcontroller view mode update
+ ObjectController::ViewMode mode = (ObjectController::ViewMode) propertyObject->property(viewModeProperty->getName().toStdString().c_str()).toInt();
+ theController->setViewMode(mode);
+ QSettings & settings = Application::getSettings();
+ settings.beginGroup("PropertyExplorer");
+ settings.setValue("viewMode", mode);
+ settings.endGroup();
+ return true;
+ } else {
+ // pass the event on to the parent class
+ return Viewer::eventFilter(object, event);
+ }
+
+}
+
+// ---------------- createProperties ----------------
+void PropertyExplorer::createProperties() {
+ // viewer properties
+ propertyObject = new PropertyObject("Property Explorer");
+
+ // view mode property
+ // get the value store in the application settings
+ QSettings & settings = Application::getSettings();
+ settings.beginGroup("PropertyExplorer");
+ ObjectController::ViewMode mode = (ObjectController::ViewMode) settings.value("viewMode", ObjectController::BUTTON).toInt();
+ settings.endGroup();
+
+ viewModeProperty = new Property("View mode", mode, "The display type of the PropertyExplorer", "");
+ viewModeProperty->setEnumTypeName("camitk::ObjectController::ViewMode");
+ QStringList viewModeNames;
+ viewModeNames << "Tree" << "Groupbox" << "Button";
+ viewModeProperty->setAttribute("enumNames", viewModeNames);
+ propertyObject->addProperty(viewModeProperty);
+
+ // propertyObject is monitored by the PropertyExplorer instance (this) when its properties change
+ propertyObject->installEventFilter(this);
+}
}
diff --git a/sdk/libraries/core/viewer/PropertyExplorer.h b/sdk/libraries/core/viewer/PropertyExplorer.h
index 61aa4db..a96f36a 100644
--- a/sdk/libraries/core/viewer/PropertyExplorer.h
+++ b/sdk/libraries/core/viewer/PropertyExplorer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -29,6 +29,7 @@
#include "Viewer.h"
#include "ObjectController.h"
#include "ActionViewer.h"
+#include "PropertyObject.h"
// -- QT stuff
#include <qteditorfactory.h>
@@ -82,8 +83,7 @@ class ObjectController;
*/
class CAMITK_API PropertyExplorer : public Viewer {
Q_OBJECT
- Q_ENUMS(camitk::ObjectController::ViewMode); // so that it can be used in property editor
- Q_PROPERTY(camitk::ObjectController::ViewMode viewMode READ getViewMode WRITE setViewMode);
+ Q_ENUMS(camitk::ObjectController::ViewMode) // so that it can be used in property editor
public:
/** @name General
@@ -115,16 +115,6 @@ public:
virtual QObject * getPropertyObject();
///@}
- /** @name Manage View mode (user preference)
- */
- ///@{
- /// get the current view mode
- const ObjectController::ViewMode getViewMode();
-
- /// set the view mode
- void setViewMode(ObjectController::ViewMode);
- ///@}
-
///@name Tab selection management
///@{
@@ -152,6 +142,32 @@ private:
/// the viewed Component
Component *currentComponent;
+ /**
+ * @name CamiTK Properties of this viewer
+ */
+ ///@{
+ /**
+ * The property object that holds the properties of this viewer
+ */
+ PropertyObject* propertyObject;
+
+ /**
+ * The CamiTK property that stands for the ObjectController view mode.
+ */
+ Property* viewModeProperty;
+
+ /**
+ * Event filter of this class instance to watch its properties instances.
+ * Each time a property has dynamically changed, this method is called.
+ */
+ bool eventFilter(QObject *object, QEvent *event);
+
+ /**
+ * Create and handle the CamiTK properties of this viewer.
+ */
+ void createProperties();
+
+ ///@}
/** clear all the additional widgets, reset currentComponent (and update its visibility).
* \note this method does not delete the different widgets that were included in the tabs, the Component should do it.
diff --git a/sdk/libraries/core/viewer/RendererWidget.cpp b/sdk/libraries/core/viewer/RendererWidget.cpp
index ec0e62e..4e3f552 100644
--- a/sdk/libraries/core/viewer/RendererWidget.cpp
+++ b/sdk/libraries/core/viewer/RendererWidget.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -95,7 +95,7 @@
namespace camitk {
//--------------- Picking Interactor ---------------------------------------
-vtkCxxRevisionMacro(vtkInteractorStylePick, "$Revision: 1.1 $");
+vtkInstantiatorNewMacro(vtkInteractorStylePick);
vtkStandardNewMacro(vtkInteractorStylePick);
//--------------------------------------------------------------------------
vtkInteractorStylePick::vtkInteractorStylePick() {
@@ -325,7 +325,7 @@ void vtkInteractorStylePick::Pick() {
vtkAssemblyPath *path = NULL;
rwi->StartPickCallback();
- vtkAbstractPropPicker *picker =
+ vtkSmartPointer<vtkAbstractPropPicker> picker =
vtkAbstractPropPicker::SafeDownCast ( rwi->GetPicker() );
if ( picker != NULL ) {
vtkAreaPicker *areaPicker = vtkAreaPicker::SafeDownCast ( picker );
@@ -337,6 +337,7 @@ void vtkInteractorStylePick::Pick() {
0.0, this->CurrentRenderer );
}
path = picker->GetPath();
+ picker = NULL;
}
if ( path == NULL ) {
this->HighlightProp ( NULL );
@@ -386,12 +387,11 @@ RendererWidget::RendererWidget(QWidget* parent, ControlMode mode) : QVTKWidget(p
pointSize = 4.0;
//-- render window
- vtkSmartPointer<vtkRenderWindow> renderWindow = vtkRenderWindow::New();
+ vtkSmartPointer<vtkRenderWindow> renderWindow = GetRenderWindow();
//-- renderer
- renderer = vtkRenderer::New();
+ renderer = vtkSmartPointer<vtkRenderer>::New();
renderWindow->AddRenderer( renderer );
- SetRenderWindow( renderWindow );
//-- interactor
interactor = vtkSmartPointer<QVTKInteractor>::New();
@@ -476,7 +476,7 @@ RendererWidget::RendererWidget(QWidget* parent, ControlMode mode) : QVTKWidget(p
annotatedCube->SetXFaceTextRotation(90);
annotatedCube->SetZFaceTextRotation(90);
annotatedCube->SetFaceTextScale(0.65);
- vtkSmartPointer<vtkTransform> transform = vtkTransform::New();
+ vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
transform->Identity();
transform->Scale(0.05, 0.05, 0.05); // 5% of unit length
annotatedCube->GetAssembly()->SetPosition(0.0, 0.0, 0.0);
@@ -615,10 +615,10 @@ RendererWidget::RendererWidget(QWidget* parent, ControlMode mode) : QVTKWidget(p
//---------------------- Destructor ------------------------
RendererWidget::~RendererWidget() {
- // delete all properties
- foreach(ScreenshotFormatInfo* sfi, screenshotMap.values())
- delete sfi;
- screenshotMap.clear();
+ // delete all properties
+ foreach(ScreenshotFormatInfo* sfi, screenshotMap.values())
+ delete sfi;
+ screenshotMap.clear();
}
//---------------------- buildScreenshotMap ------------------------
@@ -696,23 +696,14 @@ void RendererWidget::screenshot(QString filename) {
break;
case EPS:
exporter = vtkSmartPointer<vtkGL2PSExporter>::New();
- vtkGL2PSExporter::SafeDownCast(exporter)->CompressOff();
- vtkGL2PSExporter::SafeDownCast(exporter)->SetFilePrefix(fileprefix);
- vtkGL2PSExporter::SafeDownCast(exporter)->DrawBackgroundOn();
vtkGL2PSExporter::SafeDownCast(exporter)->SetFileFormatToEPS();
break;
case PDF:
exporter = vtkSmartPointer<vtkGL2PSExporter>::New();
- vtkGL2PSExporter::SafeDownCast(exporter)->CompressOff();
- vtkGL2PSExporter::SafeDownCast(exporter)->SetFilePrefix(fileprefix);
- vtkGL2PSExporter::SafeDownCast(exporter)->DrawBackgroundOn();
vtkGL2PSExporter::SafeDownCast(exporter)->SetFileFormatToPDF();
break;
case TEX:
exporter = vtkSmartPointer<vtkGL2PSExporter>::New();
- vtkGL2PSExporter::SafeDownCast(exporter)->CompressOff();
- vtkGL2PSExporter::SafeDownCast(exporter)->SetFilePrefix(fileprefix);
- vtkGL2PSExporter::SafeDownCast(exporter)->DrawBackgroundOn();
vtkGL2PSExporter::SafeDownCast(exporter)->SetFileFormatToTeX();
break;
/* TODO export to POV and export to X3D using corresponding writer
@@ -723,9 +714,6 @@ void RendererWidget::screenshot(QString filename) {
*/
case SVG:
exporter = vtkGL2PSExporter::New();
- vtkGL2PSExporter::SafeDownCast(exporter)->CompressOff();
- vtkGL2PSExporter::SafeDownCast(exporter)->SetFilePrefix(fileprefix);
- vtkGL2PSExporter::SafeDownCast(exporter)->DrawBackgroundOn();
vtkGL2PSExporter::SafeDownCast(exporter)->SetFileFormatToSVG();
break;
case OBJ:
@@ -748,9 +736,25 @@ void RendererWidget::screenshot(QString filename) {
break;
}
+ // specific options for GL2PS exporter (Vtk 6 has a much better vtkGL2PSExporter)
+ vtkSmartPointer<vtkGL2PSExporter> gl2psExporter = vtkGL2PSExporter::SafeDownCast(exporter);
+ if (gl2psExporter) {
+ vtkGL2PSExporter::SafeDownCast(exporter)->CompressOff();
+ vtkGL2PSExporter::SafeDownCast(exporter)->SetSortToBSP();
+ vtkGL2PSExporter::SafeDownCast(exporter)->Write3DPropsAsRasterImageOff();
+ vtkGL2PSExporter::SafeDownCast(exporter)->SetFilePrefix(fileprefix);
+ vtkGL2PSExporter::SafeDownCast(exporter)->DrawBackgroundOff();
+ }
+
if (exporter) {
+ bool displayGradientBackup = displayGradient;
+ if (displayGradientBackup)
+ setGradientBackground(false);
exporter->SetInput(GetRenderWindow());
exporter->Write();
+ if (displayGradientBackup)
+ setGradientBackground(true);
+ refresh();
} else {
if (imageWriter) {
// create the proper vtk filter for export
@@ -799,6 +803,8 @@ void RendererWidget::setGradientBackground(bool gb) {
renderer->GradientBackgroundOn();
renderer->SetBackground(0.823, 0.823, 0.921); // light blue in the bottom
renderer->SetBackground2(1, 1, 1); // white on top
+ } else {
+ renderer->GradientBackgroundOff();
}
// have to do that to force the display of (c) on top
@@ -1027,12 +1033,12 @@ void RendererWidget::updateAxes() {
// the size of the annotated cube is about 5% of the size of the bound
maxLength /= 2.0;
- vtkSmartPointer<vtkTransform> transform = vtkTransform::New();
+ vtkSmartPointer<vtkTransform> transform = vtkSmartPointer<vtkTransform>::New();
transform->Identity();
transform->Scale(maxLength, maxLength, maxLength);
// free the last user transform used. Not freeing it, caused a memory leak on each viewer->refresh() call
- annotatedCube->GetAssembly()->GetUserTransform()->Delete();
+ // annotatedCube->GetAssembly()->GetUserTransform()->Delete();
annotatedCube->GetAssembly()->SetUserTransform(transform);
}
@@ -1246,15 +1252,19 @@ void RendererWidget::keyPressEvent(QKeyEvent* event) {
event->ignore();
}
+//--------------------- mousePressEvent ----------------------------------
void RendererWidget::mousePressEvent ( QMouseEvent* event ) {
if ( ( QApplication::keyboardModifiers() == Qt::ControlModifier ) &&
( event->button() == Qt::LeftButton ) ) {
startPicking();
pickInteractorStyle->OnLeftButtonDown();
- } else if ( event->button() == Qt::RightButton ) {
- emit rightButtonPressed();
+
+ } else {
+ if ( event->button() == Qt::RightButton ) {
+ emit rightButtonPressed();
+ }
+ QVTKWidget::mousePressEvent ( event );
}
- QVTKWidget::mousePressEvent ( event );
}
//--------------------- mouseReleaseEvent ----------------------------------
@@ -1409,5 +1419,4 @@ void RendererWidget::setPicker(vtkSmartPointer<vtkAbstractPropPicker> woodyWood)
}
}
-
}
diff --git a/sdk/libraries/core/viewer/RendererWidget.h b/sdk/libraries/core/viewer/RendererWidget.h
index 8ec305b..fbfc534 100644
--- a/sdk/libraries/core/viewer/RendererWidget.h
+++ b/sdk/libraries/core/viewer/RendererWidget.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
@@ -52,52 +52,55 @@ class vtkUnsignedCharArray;
class vtkTextMapper;
namespace camitk {
-// -- Core stuff classes
-class GeometricObject;
+ // -- Core stuff classes
+ class GeometricObject;
-/// Interactor used when we are in picking mode
-class vtkInteractorStylePick : public vtkInteractorStyle {
+ /// Interactor used when we are in picking mode
+ class vtkInteractorStylePick : public vtkInteractorStyle {
-public :
+ public:
- static vtkInteractorStylePick * New();
- vtkTypeRevisionMacro ( vtkInteractorStylePick, vtkInteractorStyle );
+ static vtkInteractorStylePick * New();
+ vtkTypeMacro(vtkInteractorStylePick, vtkInteractorStyle);
- void PrintSelf ( ostream& os, vtkIndent indent );
+ void PrintSelf(ostream& os, vtkIndent indent);
- void SetAreaPicking(bool b);
+ void SetAreaPicking(bool b);
- virtual void OnLeftButtonDown();
+ virtual void OnLeftButtonDown();
- virtual void OnLeftButtonUp();
+ virtual void OnLeftButtonUp();
- virtual void OnMouseMove();
+ virtual void OnMouseMove();
-protected :
+ protected:
- vtkInteractorStylePick();
- ~vtkInteractorStylePick();
+ vtkInteractorStylePick();
+ ~vtkInteractorStylePick();
- virtual void Pick();
+ virtual void Pick();
- void RedrawRubberBand();
+ void RedrawRubberBand();
- int StartPosition[2];
- int EndPosition[2];
+ int StartPosition[2];
+ int EndPosition[2];
- int Moving;
+ int Moving;
- vtkUnsignedCharArray* PixelArray;
+ vtkUnsignedCharArray* PixelArray;
- bool AreaPicking;
+ bool AreaPicking;
-// private :
-//
-// vtkInteractorStylePick ( const vtkInteractorStylePick& ); // Not implemented
-// void operator= ( const vtkInteractorStylePick& ); // Not implemented
+ // private :
+ //
+ // vtkInteractorStylePick ( const vtkInteractorStylePick& ); // Not implemented
+ // void operator= ( const vtkInteractorStylePick& ); // Not implemented
-};
+ };
+
+}
+namespace camitk{
/**
* @ingroup group_sdk_libraries_core_viewer
*
@@ -116,7 +119,6 @@ protected :
*
*
**/
-
class CAMITK_API RendererWidget : public QVTKWidget {
Q_OBJECT
Q_ENUMS(ControlMode CameraOrientation); // so that it can be used in property editor
diff --git a/sdk/libraries/core/viewer/Viewer.cpp b/sdk/libraries/core/viewer/Viewer.cpp
index cbf2acb..318887a 100644
--- a/sdk/libraries/core/viewer/Viewer.cpp
+++ b/sdk/libraries/core/viewer/Viewer.cpp
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/core/viewer/Viewer.h b/sdk/libraries/core/viewer/Viewer.h
index ca2b10a..c8a76fe 100644
--- a/sdk/libraries/core/viewer/Viewer.h
+++ b/sdk/libraries/core/viewer/Viewer.h
@@ -2,7 +2,7 @@
* $CAMITK_LICENCE_BEGIN$
*
* CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
*
* Visit http://camitk.imag.fr for more information
*
diff --git a/sdk/libraries/coreschema/Action.xsd b/sdk/libraries/coreschema/Action.xsd
deleted file mode 100644
index 61eec42..0000000
--- a/sdk/libraries/coreschema/Action.xsd
+++ /dev/null
@@ -1,20 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="ClassNames.xsd"/>
- <xsd:include schemaLocation="Classification.xsd"/>
- <xsd:include schemaLocation="Parameters.xsd"/>
- <xsd:include schemaLocation="ActionProperties.xsd"/>
-
- <xsd:element name="action" type="Action"/>
- <xsd:complexType name="Action">
- <xsd:sequence>
- <xsd:element name="name" type="xsd:string"/>
- <xsd:element name="description" type="xsd:string"/>
- <xsd:element name="classNames" type="ClassNames"/>
- <xsd:element name="classification" type="Classification"/>
- <xsd:element name="parameters" type="Parameters" minOccurs="0"/>
- <xsd:element name="properties" type="ActionProperties" minOccurs="0"/>
- </xsd:sequence>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ActionProperties.xsd b/sdk/libraries/coreschema/ActionProperties.xsd
deleted file mode 100644
index b50f69f..0000000
--- a/sdk/libraries/coreschema/ActionProperties.xsd
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:complexType name="ActionProperties">
- <xsd:attribute name="modal" type="xsd:boolean"/>
- <xsd:attribute name="embedded" type="xsd:boolean"/>
- <xsd:attribute name="delayed" type="xsd:boolean"/>
- </xsd:complexType>
-</xsd:schema>
-
diff --git a/sdk/libraries/coreschema/Actions.xsd b/sdk/libraries/coreschema/Actions.xsd
deleted file mode 100644
index ce77684..0000000
--- a/sdk/libraries/coreschema/Actions.xsd
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:complexType name="Actions">
- <xsd:sequence>
- <xsd:element name="actionFile" type="xsd:anyURI" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/CMakeLists.txt b/sdk/libraries/coreschema/CMakeLists.txt
deleted file mode 100644
index 13f0ac4..0000000
--- a/sdk/libraries/coreschema/CMakeLists.txt
+++ /dev/null
@@ -1,45 +0,0 @@
-project(coreschema)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_coreschema)
-else()
- set(LIB_NAME library-coreschema)
-endif()
-
-# XSD really needed
-find_package(XSD REQUIRED)
-
-# Create lib files from xsd
-file (GLOB_RECURSE XSD_INPUT_FILES *.xsd)
-
-# generates headers from scratch
-set (XSD_H)
-set (XSD_SRCS)
-
-if (XSD_COMMAND)
- set(XSD_COMMAND xsdcxx CACHE STRING "name of the XSD code synthesis compiler")
- # generates headers from scratch
- foreach(xsdFile ${XSD_INPUT_FILES})
- get_filename_component(xsdFileName ${xsdFile} NAME_WE)
- add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx
- COMMAND ${XSD_COMMAND}
- ARGS cxx-tree --generate-polymorphic --generate-serialization --namespace-map =coreschema --polymorphic-type Method --polymorphic-type Criteria ${xsdFile}
- DEPENDS ${xsdFile})
- set(XSD_H ${XSD_H} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.hxx)
- set(XSD_SRCS ${XSD_SRCS} ${CMAKE_CURRENT_BINARY_DIR}/${xsdFileName}.cxx)
- endforeach()
-else()
- message(FATAL_ERROR "Cannot find xsdcxx command: cannot generate mml from scratch, try with MML_GENERATE_XSD_LIB set to OFF")
- set(MML_GENERATE_XSD_LIB OFF)
-endif()
-
-camitk_library(STATIC
- SOURCES ${XSD_H} ${XSD_SRCS}
- NEEDS_XSD
- HEADERS_TO_INSTALL ${XSD_H}
- CEP_NAME SDK
- DESCRIPTION "Allows data-binding in XML of core basic classes. Required by the application wizard for instance."
-)
-
-# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
-set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/ClassNames.xsd b/sdk/libraries/coreschema/ClassNames.xsd
deleted file mode 100644
index 72019be..0000000
--- a/sdk/libraries/coreschema/ClassNames.xsd
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:complexType name="ClassNames">
- <xsd:sequence>
- <!-- No space in the name of the component -->
- <xsd:element name="componentClass" type="xsd:NMTOKEN"/>
- <xsd:element name="actionClass" type="xsd:NMTOKEN" minOccurs="0"/>
- <xsd:element name="extensionClass" type="xsd:NMTOKEN"/>
- </xsd:sequence>
- </xsd:complexType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/Classification.xsd b/sdk/libraries/coreschema/Classification.xsd
deleted file mode 100644
index 92e0c9c..0000000
--- a/sdk/libraries/coreschema/Classification.xsd
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="ClassNames.xsd"/>
- <xsd:include schemaLocation="ItkFilter.xsd"/>
- <xsd:complexType name="Classification">
- <xsd:sequence>
- <xsd:element name="family" type="xsd:string"/>
- <xsd:element name="tag" type="xsd:string" minOccurs="0" maxOccurs="unbounded"/>
- <xsd:element name="itkFilter" type="ItkFilter" minOccurs = "0" maxOccurs = "1"/>
- </xsd:sequence>
- </xsd:complexType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/Component.xsd b/sdk/libraries/coreschema/Component.xsd
deleted file mode 100644
index 25bf71f..0000000
--- a/sdk/libraries/coreschema/Component.xsd
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-
- <xsd:include schemaLocation="ClassNames.xsd"/>
- <xsd:include schemaLocation="Parameters.xsd"/>
- <xsd:include schemaLocation="Representation.xsd"/>
-
- <xsd:element name="component" type="Component"/>
- <xsd:complexType name="Component">
- <xsd:sequence>
- <xsd:element name="name" type="xsd:string"/>
- <xsd:element name="description" type="xsd:string"/>
- <xsd:element name="classNames" type="ClassNames"/>
- <xsd:element name="representation" type="Representation"/>
- <xsd:element name="properties" type="Parameters" minOccurs="0"/>
- </xsd:sequence>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ComponentExtension.xsd b/sdk/libraries/coreschema/ComponentExtension.xsd
deleted file mode 100644
index d2cdab6..0000000
--- a/sdk/libraries/coreschema/ComponentExtension.xsd
+++ /dev/null
@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:complexType name="ComponentExtension">
- <xsd:attribute name="name" type="xsd:NMTOKEN"/>
- </xsd:complexType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ComponentFile.xsd b/sdk/libraries/coreschema/ComponentFile.xsd
deleted file mode 100644
index 0542a78..0000000
--- a/sdk/libraries/coreschema/ComponentFile.xsd
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
-
- <xsd:complexType name="ComponentFile">
- <!-- <xsd:restriction base="xsd:anyURI"/> -->
- <xsd:attribute name="file" type="xsd:anyURI"/>
- <xsd:attribute name="TopLevel" type="xsd:boolean" default="true"/>
- </xsd:complexType>
-
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/Components.xsd b/sdk/libraries/coreschema/Components.xsd
deleted file mode 100644
index c4dc3ee..0000000
--- a/sdk/libraries/coreschema/Components.xsd
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="ComponentExtension.xsd"/>
- <xsd:include schemaLocation="ComponentFile.xsd"/>
-
- <xsd:complexType name="Components">
- <xsd:sequence>
- <xsd:element name="componentFile" maxOccurs="unbounded" type="ComponentFile"/>
- <xsd:element name="componentExtension" maxOccurs="unbounded" type="ComponentExtension"/>
- </xsd:sequence>
- </xsd:complexType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/Extension.xsd b/sdk/libraries/coreschema/Extension.xsd
deleted file mode 100644
index f27e3c0..0000000
--- a/sdk/libraries/coreschema/Extension.xsd
+++ /dev/null
@@ -1,24 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified">
- <xsd:include schemaLocation="Actions.xsd"/>
- <xsd:include schemaLocation="Components.xsd"/>
- <xsd:include schemaLocation="External.xsd"/>
- <xsd:include schemaLocation="ExtensionType.xsd"/>
-
- <xsd:element name="extension" type="Extension"/>
- <xsd:complexType name="Extension">
- <xsd:sequence>
- <xsd:element name="name" type="xsd:string"/>
- <xsd:element name="description" type="xsd:string"/>
- <xsd:element name="extensionClass" type="xsd:NCName"/>
- <xsd:choice>
- <xsd:element name="actions" type="Actions"/>
-<!-- <xsd:element name="application" type="Application"/> -->
- <xsd:element name="components" type="Components"/>
-<!-- <xsd:element name="viewer" type="viewer"/> -->
- </xsd:choice>
- <xsd:element name="external" minOccurs="0" maxOccurs="unbounded" type="External"/>
- </xsd:sequence>
- <xsd:attribute name="type" type="ExtensionType"/>
- </xsd:complexType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ExtensionType.xsd b/sdk/libraries/coreschema/ExtensionType.xsd
deleted file mode 100644
index fdcd0b0..0000000
--- a/sdk/libraries/coreschema/ExtensionType.xsd
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:simpleType name="ExtensionType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="action"/>
- <xsd:enumeration value="application"/>
- <xsd:enumeration value="component"/>
- <xsd:enumeration value="viewer"/>
- </xsd:restriction>
- </xsd:simpleType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/External.xsd b/sdk/libraries/coreschema/External.xsd
deleted file mode 100644
index 444bc32..0000000
--- a/sdk/libraries/coreschema/External.xsd
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified">
- <xsd:include schemaLocation="ExternalType.xsd"/>
- <xsd:complexType name="External">
- <xsd:attribute name="type" type="ExternalType" use="required"/>
- <xsd:attribute name="name" type="xsd:string" use="required"/>
- <xsd:attribute name="additional" type="xsd:string" use="optional"/>
- </xsd:complexType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ExternalType.xsd b/sdk/libraries/coreschema/ExternalType.xsd
deleted file mode 100644
index 5b9571a..0000000
--- a/sdk/libraries/coreschema/ExternalType.xsd
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified">
- <xsd:simpleType name="ExternalType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="library"/>
- <xsd:enumeration value="component"/>
- <xsd:enumeration value="tool"/>
- </xsd:restriction>
- </xsd:simpleType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/ITKOutputType.xsd b/sdk/libraries/coreschema/ITKOutputType.xsd
deleted file mode 100644
index a7db937..0000000
--- a/sdk/libraries/coreschema/ITKOutputType.xsd
+++ /dev/null
@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:simpleType name="ITKOutputType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="Same as Input"/>
- <xsd:enumeration value="unsigned char"/>
- <xsd:enumeration value="char"/>
- <xsd:enumeration value="unsigned short"/>
- <xsd:enumeration value="short"/>
- <xsd:enumeration value="unsigned int"/>
- <xsd:enumeration value="int" />
- <xsd:enumeration value="long"/>
- <xsd:enumeration value="double"/>
- </xsd:restriction>
- </xsd:simpleType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/ItkFilter.xsd b/sdk/libraries/coreschema/ItkFilter.xsd
deleted file mode 100644
index 32c12a8..0000000
--- a/sdk/libraries/coreschema/ItkFilter.xsd
+++ /dev/null
@@ -1,7 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="ITKOutputType.xsd"/>
- <xsd:complexType name="ItkFilter">
- <xsd:attribute name="outputType" type="ITKOutputType"/>
- </xsd:complexType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/Parameter.xsd b/sdk/libraries/coreschema/Parameter.xsd
deleted file mode 100644
index b135346..0000000
--- a/sdk/libraries/coreschema/Parameter.xsd
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="ParameterType.xsd"/>
-
- <xsd:complexType name="Parameter">
- <xsd:attribute name="name" use="required" type="xsd:NCName"/>
- <xsd:attribute name="type" use="required" type="ParameterType"/>
- <xsd:attribute name="defaultValue" type="xsd:string"/>
- <xsd:attribute name="editable" type="xsd:boolean" default="true"/>
- </xsd:complexType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/ParameterType.xsd b/sdk/libraries/coreschema/ParameterType.xsd
deleted file mode 100644
index 25718b0..0000000
--- a/sdk/libraries/coreschema/ParameterType.xsd
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <!-- The liste of possible parameters is more limited than the
- list of possible QVariant in Qt.
- Indeed, QVariant like QUrl, QVector2D, QVector4D and QMatrix4x4
- are note recognized by QPropertyViewer...
- -->
- <xsd:simpleType name="ParameterType">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="int" />
- <xsd:enumeration value="bool"/>
- <xsd:enumeration value="double" />
- <xsd:enumeration value="QString"/>
- <xsd:enumeration value="QDate"/>
- <xsd:enumeration value="QTime"/>
- <xsd:enumeration value="QColor" />
- <xsd:enumeration value="QPoint" />
- <xsd:enumeration value="QPointF"/>
- <xsd:enumeration value="QVector3D"/>
- <xsd:enumeration value="QVector4D"/>
- </xsd:restriction>
- </xsd:simpleType>
-</xsd:schema>
diff --git a/sdk/libraries/coreschema/Parameters.xsd b/sdk/libraries/coreschema/Parameters.xsd
deleted file mode 100644
index d5b87ae..0000000
--- a/sdk/libraries/coreschema/Parameters.xsd
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:include schemaLocation="Parameter.xsd"/>
-
- <xsd:complexType name="Parameters">
- <xsd:sequence>
- <xsd:element name="parameter" type="Parameter" minOccurs="1" maxOccurs="unbounded"/>
- </xsd:sequence>
- </xsd:complexType>
-</xsd:schema>
\ No newline at end of file
diff --git a/sdk/libraries/coreschema/Representation.xsd b/sdk/libraries/coreschema/Representation.xsd
deleted file mode 100644
index f616b0a..0000000
--- a/sdk/libraries/coreschema/Representation.xsd
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema">
- <xsd:simpleType name="Representation">
- <xsd:restriction base="xsd:string">
- <xsd:enumeration value="Image"/>
- <xsd:enumeration value="Mesh"/>
- <xsd:enumeration value="None"/>
- </xsd:restriction>
- </xsd:simpleType>
-</xsd:schema>
diff --git a/sdk/libraries/qtpropertybrowser/CMakeLists.txt b/sdk/libraries/qtpropertybrowser/CMakeLists.txt
index 54fa63e..82ba599 100644
--- a/sdk/libraries/qtpropertybrowser/CMakeLists.txt
+++ b/sdk/libraries/qtpropertybrowser/CMakeLists.txt
@@ -1,16 +1,6 @@
-project(QTPROPERTYBROWSER)
-
-if (PACKAGING_NSIS)
- set(LIB_NAME library_qtpropertybrowser)
-else()
- set(LIB_NAME library-qtpropertybrowser)
-endif()
-
# For last version of this code see
# http://qt.gitorious.org/qt-solutions/qt-solutions/trees/master/qtpropertybrowser
-cmake_minimum_required(VERSION 2.6)
-
# Is this tool is compiled inside or outside CAMITK (as a standalone)?
if (NOT CEP_NAME STREQUAL "SDK")
# if this tool is compiled independently from CamiTK
@@ -18,13 +8,8 @@ if (NOT CEP_NAME STREQUAL "SDK")
message(SEND_ERROR "Compilation of QTPROPERTYBROWSER outside CamiTK SDK not supported yet. Please contact us.")
endif()
-find_package(Qt4 4.6.0 REQUIRED)
-
-if(NOT QT4_FOUND)
- message(SEND_ERROR "Failed to find Qt 4.6 or greater. This is needed for qtpropertybrowser lib, and therefore for CamiTK.")
-endif()
-
-include(${QT_USE_FILE})
+# Instruct CMake to run moc automatically when needed.
+set(CMAKE_AUTOMOC ON)
set(qtpropertyeditor_SRCS
src/qtpropertybrowser.cpp
@@ -43,91 +28,14 @@ include_directories(${CMAKE_CURRENT_BINARY_DIR}
${QT_INCLUDE_DIR}
)
-qt4_generate_moc(
- src/qtpropertybrowser.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertybrowser.cpp
-)
-qt4_generate_moc(
- src/qtpropertymanager.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertymanager.cpp
-)
-qt4_generate_moc(
- src/qteditorfactory.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qteditorfactory.cpp
-)
-qt4_generate_moc(
- src/qtvariantproperty.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtvariantproperty.cpp
-)
-qt4_generate_moc(
- src/qttreepropertybrowser.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qttreepropertybrowser.cpp
-)
-qt4_generate_moc(
- src/qtbuttonpropertybrowser.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtbuttonpropertybrowser.cpp
-)
-qt4_generate_moc(
- src/qtgroupboxpropertybrowser.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtgroupboxpropertybrowser.cpp
-)
-qt4_generate_moc(
- src/qtpropertymanager.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/qtpropertymanager.moc
-)
-qt4_generate_moc(
- src/qteditorfactory.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/qteditorfactory.moc
-)
-qt4_generate_moc(
- src/qttreepropertybrowser.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/qttreepropertybrowser.moc
-)
-
-set(
- qtpropertyeditor_HEADERS_ONLY_MOC
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertybrowser.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertymanager.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qteditorfactory.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtvariantproperty.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qttreepropertybrowser.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtbuttonpropertybrowser.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtgroupboxpropertybrowser.cpp
- ${CMAKE_CURRENT_BINARY_DIR}/qtpropertymanager.moc
- ${CMAKE_CURRENT_BINARY_DIR}/qteditorfactory.moc
- ${CMAKE_CURRENT_BINARY_DIR}/qttreepropertybrowser.moc
-)
-
-set_source_files_properties(
- ${qtpropertyeditor_HEADERS_ONLY_MOC}
- PROPERTIES
- HEADER_FILE_ONLY true
-)
-
-qt4_generate_moc(
- src/qtpropertybrowserutils_p.h
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertybrowserutils_p.cpp
-)
-
-set(
- qtpropertyeditor_HEADERS_MOC
- ${CMAKE_CURRENT_BINARY_DIR}/moc_qtpropertybrowserutils_p.cpp
-)
-
-set(
- qtpropertyeditor_MOC
- ${qtpropertyeditor_HEADERS_MOC}
- ${qtpropertyeditor_HEADERS_ONLY_MOC}
-)
-
-qt4_add_resources(
+qt5_add_resources(
qtpropertyeditor_RESOURCES
src/qtpropertybrowser.qrc
)
-qt4_add_resources(RESOURCE_SRCS src/qtpropertybrowser.qrc)
+qt5_add_resources(RESOURCE_SRCS src/qtpropertybrowser.qrc)
-set(SRCS ${extension_MOC}
+set(SRCS ${extension_MOC}
${qtpropertyeditor_MOC}
${qtpropertyeditor_SRCS}
${qtpropertyeditor_RESOURCES}
@@ -141,12 +49,12 @@ file(GLOB HEADERS_UPPERCASE "src/Qt*")
camitk_library(SHARED
SOURCES ${SRCS}
- NEEDS_QT_MODULES
+ NEEDS_QT
PUBLIC #install directly in lib (or bin for Windows).
HEADERS_TO_INSTALL ${HEADERS_H} ${HEADERS_UPPERCASE}
CEP_NAME SDK
DESCRIPTION "Allows displaying and editing Qt Meta Object properties. Used to display component properties. This library is required."
-)
+ )
# Recursively update the shiboken path variable containing the CamiTK SDK tree structure
set(SHIBOKEN_CAMITK_SDK_PATH ${SHIBOKEN_CAMITK_SDK_PATH}:${CMAKE_CURRENT_SOURCE_DIR} CACHE INTERNAL "")
diff --git a/sdk/libraries/qtpropertybrowser/src/qtbuttonpropertybrowser.cpp b/sdk/libraries/qtpropertybrowser/src/qtbuttonpropertybrowser.cpp
index 7622f2e..79b1b8d 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtbuttonpropertybrowser.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtbuttonpropertybrowser.cpp
@@ -39,13 +39,13 @@
#include "qtbuttonpropertybrowser.h"
-#include <QtCore/QSet>
-#include <QtGui/QGridLayout>
-#include <QtGui/QLabel>
-#include <QtCore/QTimer>
-#include <QtCore/QMap>
-#include <QtGui/QToolButton>
-#include <QtGui/QStyle>
+#include <QSet>
+#include <QGridLayout>
+#include <QLabel>
+#include <QTimer>
+#include <QMap>
+#include <QToolButton>
+#include <QStyle>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
diff --git a/sdk/libraries/qtpropertybrowser/src/qteditorfactory.cpp b/sdk/libraries/qtpropertybrowser/src/qteditorfactory.cpp
index fb46670..47ba409 100644
--- a/sdk/libraries/qtpropertybrowser/src/qteditorfactory.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qteditorfactory.cpp
@@ -37,27 +37,29 @@
**
****************************************************************************/
+// Qt4 -> Qt5
+#define Q_TYPENAME typename
#include "qteditorfactory.h"
#include "qtpropertybrowserutils_p.h"
-#include <QtGui/QSpinBox>
-#include <QtGui/QScrollBar>
-#include <QtGui/QComboBox>
-#include <QtGui/QAbstractItemView>
-#include <QtGui/QLineEdit>
-#include <QtGui/QDateTimeEdit>
-#include <QtGui/QHBoxLayout>
-#include <QtGui/QMenu>
-#include <QtGui/QKeyEvent>
-#include <QtGui/QApplication>
-#include <QtGui/QLabel>
-#include <QtGui/QToolButton>
-#include <QtGui/QColorDialog>
-#include <QtGui/QFontDialog>
-#include <QtGui/QSpacerItem>
-#include <QtGui/QStyleOption>
-#include <QtGui/QPainter>
-#include <QtCore/QMap>
+#include <QSpinBox>
+#include <QScrollBar>
+#include <QComboBox>
+#include <QAbstractItemView>
+#include <QLineEdit>
+#include <QDateTimeEdit>
+#include <QHBoxLayout>
+#include <QMenu>
+#include <QKeyEvent>
+#include <QApplication>
+#include <QLabel>
+#include <QToolButton>
+#include <QColorDialog>
+#include <QFontDialog>
+#include <QSpacerItem>
+#include <QStyleOption>
+#include <QPainter>
+#include <QMap>
#if defined(Q_CC_MSVC)
# pragma warning(disable: 4786) /* MS VS 6: truncating debug info after 255 characters */
diff --git a/sdk/libraries/qtpropertybrowser/src/qtgroupboxpropertybrowser.cpp b/sdk/libraries/qtpropertybrowser/src/qtgroupboxpropertybrowser.cpp
index 1c7bd56..339007c 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtgroupboxpropertybrowser.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtgroupboxpropertybrowser.cpp
@@ -39,12 +39,12 @@
#include "qtgroupboxpropertybrowser.h"
-#include <QtCore/QSet>
-#include <QtGui/QGridLayout>
-#include <QtGui/QLabel>
-#include <QtGui/QGroupBox>
-#include <QtCore/QTimer>
-#include <QtCore/QMap>
+#include <QSet>
+#include <QGridLayout>
+#include <QLabel>
+#include <QGroupBox>
+#include <QTimer>
+#include <QMap>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
diff --git a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.cpp b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.cpp
index 58760b5..32eaba3 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.cpp
@@ -39,10 +39,10 @@
#include "qtpropertybrowser.h"
-#include <QtCore/QSet>
-#include <QtCore/QMap>
-#include <QtGui/QIcon>
-#include <QtGui/QLineEdit>
+#include <QSet>
+#include <QMap>
+#include <QIcon>
+#include <QLineEdit>
#if defined(Q_CC_MSVC)
# pragma warning(disable: 4786) /* MS VS 6: truncating debug info after 255 characters */
diff --git a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.h b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.h
index ae04ca6..4ac81b6 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.h
+++ b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowser.h
@@ -41,9 +41,9 @@
#ifndef QTPROPERTYBROWSER_H
#define QTPROPERTYBROWSER_H
-#include <QtGui/QWidget>
-#include <QtCore/QSet>
-#include <QtGui/QLineEdit>
+#include <QtWidgets/QWidget>
+#include <QSet>
+#include <QtWidgets/QLineEdit>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
diff --git a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils.cpp b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils.cpp
index f57779d..17a3ebd 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils.cpp
@@ -39,58 +39,39 @@
#include "qtpropertybrowserutils_p.h"
-#include <QtGui/QApplication>
-#include <QtGui/QPainter>
-#include <QtGui/QHBoxLayout>
-#include <QtGui/QMouseEvent>
-#include <QtGui/QCheckBox>
-#include <QtGui/QLineEdit>
-#include <QtGui/QMenu>
-#include <QtGui/QStyleOption>
+#include <QApplication>
+#include <QPainter>
+#include <QHBoxLayout>
+#include <QMouseEvent>
+#include <QCheckBox>
+#include <QLineEdit>
+#include <QMenu>
+#include <QStyleOption>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
#endif
QtCursorDatabase::QtCursorDatabase() {
- appendCursor(Qt::ArrowCursor, QApplication::translate("QtCursorDatabase", "Arrow", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-arrow.png")));
- appendCursor(Qt::UpArrowCursor, QApplication::translate("QtCursorDatabase", "Up Arrow", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-uparrow.png")));
- appendCursor(Qt::CrossCursor, QApplication::translate("QtCursorDatabase", "Cross", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-cross.png")));
- appendCursor(Qt::WaitCursor, QApplication::translate("QtCursorDatabase", "Wait", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-wait.png")));
- appendCursor(Qt::IBeamCursor, QApplication::translate("QtCursorDatabase", "IBeam", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-ibeam.png")));
- appendCursor(Qt::SizeVerCursor, QApplication::translate("QtCursorDatabase", "Size Vertical", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizev.png")));
- appendCursor(Qt::SizeHorCursor, QApplication::translate("QtCursorDatabase", "Size Horizontal", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeh.png")));
- appendCursor(Qt::SizeFDiagCursor, QApplication::translate("QtCursorDatabase", "Size Backslash", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizef.png")));
- appendCursor(Qt::SizeBDiagCursor, QApplication::translate("QtCursorDatabase", "Size Slash", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeb.png")));
- appendCursor(Qt::SizeAllCursor, QApplication::translate("QtCursorDatabase", "Size All", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeall.png")));
- appendCursor(Qt::BlankCursor, QApplication::translate("QtCursorDatabase", "Blank", 0,
- QApplication::UnicodeUTF8), QIcon());
- appendCursor(Qt::SplitVCursor, QApplication::translate("QtCursorDatabase", "Split Vertical", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-vsplit.png")));
- appendCursor(Qt::SplitHCursor, QApplication::translate("QtCursorDatabase", "Split Horizontal", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-hsplit.png")));
- appendCursor(Qt::PointingHandCursor, QApplication::translate("QtCursorDatabase", "Pointing Hand", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-hand.png")));
- appendCursor(Qt::ForbiddenCursor, QApplication::translate("QtCursorDatabase", "Forbidden", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-forbidden.png")));
- appendCursor(Qt::OpenHandCursor, QApplication::translate("QtCursorDatabase", "Open Hand", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-openhand.png")));
- appendCursor(Qt::ClosedHandCursor, QApplication::translate("QtCursorDatabase", "Closed Hand", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-closedhand.png")));
- appendCursor(Qt::WhatsThisCursor, QApplication::translate("QtCursorDatabase", "What's This", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-whatsthis.png")));
- appendCursor(Qt::BusyCursor, QApplication::translate("QtCursorDatabase", "Busy", 0,
- QApplication::UnicodeUTF8), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-busy.png")));
+ appendCursor(Qt::ArrowCursor, QApplication::translate("QtCursorDatabase", "Arrow", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-arrow.png")));
+ appendCursor(Qt::UpArrowCursor, QApplication::translate("QtCursorDatabase", "Up Arrow", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-uparrow.png")));
+ appendCursor(Qt::CrossCursor, QApplication::translate("QtCursorDatabase", "Cross", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-cross.png")));
+ appendCursor(Qt::WaitCursor, QApplication::translate("QtCursorDatabase", "Wait", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-wait.png")));
+ appendCursor(Qt::IBeamCursor, QApplication::translate("QtCursorDatabase", "IBeam", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-ibeam.png")));
+ appendCursor(Qt::SizeVerCursor, QApplication::translate("QtCursorDatabase", "Size Vertical", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizev.png")));
+ appendCursor(Qt::SizeHorCursor, QApplication::translate("QtCursorDatabase", "Size Horizontal", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeh.png")));
+ appendCursor(Qt::SizeFDiagCursor, QApplication::translate("QtCursorDatabase", "Size Backslash", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizef.png")));
+ appendCursor(Qt::SizeBDiagCursor, QApplication::translate("QtCursorDatabase", "Size Slash", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeb.png")));
+ appendCursor(Qt::SizeAllCursor, QApplication::translate("QtCursorDatabase", "Size All", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-sizeall.png")));
+ appendCursor(Qt::BlankCursor, QApplication::translate("QtCursorDatabase", "Blank", 0), QIcon());
+ appendCursor(Qt::SplitVCursor, QApplication::translate("QtCursorDatabase", "Split Vertical", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-vsplit.png")));
+ appendCursor(Qt::SplitHCursor, QApplication::translate("QtCursorDatabase", "Split Horizontal", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-hsplit.png")));
+ appendCursor(Qt::PointingHandCursor, QApplication::translate("QtCursorDatabase", "Pointing Hand", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-hand.png")));
+ appendCursor(Qt::ForbiddenCursor, QApplication::translate("QtCursorDatabase", "Forbidden", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-forbidden.png")));
+ appendCursor(Qt::OpenHandCursor, QApplication::translate("QtCursorDatabase", "Open Hand", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-openhand.png")));
+ appendCursor(Qt::ClosedHandCursor, QApplication::translate("QtCursorDatabase", "Closed Hand", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-closedhand.png")));
+ appendCursor(Qt::WhatsThisCursor, QApplication::translate("QtCursorDatabase", "What's This", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-whatsthis.png")));
+ appendCursor(Qt::BusyCursor, QApplication::translate("QtCursorDatabase", "Busy", 0), QIcon(QLatin1String(":/trolltech/qtpropertybrowser/images/cursor-busy.png")));
}
void QtCursorDatabase::appendCursor(Qt::CursorShape shape, const QString &name, const QIcon &icon) {
@@ -164,7 +145,7 @@ QIcon QtPropertyBrowserUtils::brushValueIcon(const QBrush &b) {
}
QString QtPropertyBrowserUtils::colorValueText(const QColor &c) {
- return QApplication::translate("QtPropertyBrowserUtils", "[%1, %2, %3] (%4)", 0, QApplication::UnicodeUTF8)
+ return QApplication::translate("QtPropertyBrowserUtils", "[%1, %2, %3] (%4)", 0)
.arg(QString::number(c.red()))
.arg(QString::number(c.green()))
.arg(QString::number(c.blue()))
@@ -191,7 +172,7 @@ QIcon QtPropertyBrowserUtils::fontValueIcon(const QFont &f) {
}
QString QtPropertyBrowserUtils::fontValueText(const QFont &f) {
- return QApplication::translate("QtPropertyBrowserUtils", "[%1, %2]", 0, QApplication::UnicodeUTF8)
+ return QApplication::translate("QtPropertyBrowserUtils", "[%1, %2]", 0)
.arg(f.family())
.arg(f.pointSize());
}
diff --git a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils_p.h b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils_p.h
index 9c7e01a..b3bd1cc 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils_p.h
+++ b/sdk/libraries/qtpropertybrowser/src/qtpropertybrowserutils_p.h
@@ -52,10 +52,10 @@
#ifndef QTPROPERTYBROWSERUTILS_H
#define QTPROPERTYBROWSERUTILS_H
-#include <QtCore/QMap>
-#include <QtGui/QIcon>
-#include <QtGui/QWidget>
-#include <QtCore/QStringList>
+#include <QMap>
+#include <QIcon>
+#include <QWidget>
+#include <QStringList>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
diff --git a/sdk/libraries/qtpropertybrowser/src/qtpropertymanager.cpp b/sdk/libraries/qtpropertybrowser/src/qtpropertymanager.cpp
index 767d827..eb5faad 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtpropertymanager.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtpropertymanager.cpp
@@ -37,24 +37,26 @@
**
****************************************************************************/
+// Qt4 -> Qt5
+#define Q_TYPENAME typename
#include "qtpropertymanager.h"
#include "qtpropertybrowserutils_p.h"
-#include <QtCore/QDateTime>
-#include <QtCore/QLocale>
-#include <QtCore/QMap>
-#include <QtCore/QTimer>
-#include <QtGui/QIcon>
-#include <QtCore/QMetaEnum>
-#include <QtGui/QFontDatabase>
-#include <QtGui/QStyleOption>
-#include <QtGui/QStyle>
-#include <QtGui/QApplication>
-#include <QtGui/QPainter>
-#include <QtGui/QLabel>
-#include <QtGui/QVector3D>
-#include <QtGui/QCheckBox>
-#include <QtGui/QLineEdit>
+#include <QDateTime>
+#include <QLocale>
+#include <QMap>
+#include <QTimer>
+#include <QIcon>
+#include <QMetaEnum>
+#include <QFontDatabase>
+#include <QStyleOption>
+#include <QStyle>
+#include <QApplication>
+#include <QPainter>
+#include <QLabel>
+#include <QVector3D>
+#include <QCheckBox>
+#include <QLineEdit>
#include <limits.h>
#include <float.h>
diff --git a/sdk/libraries/qtpropertybrowser/src/qttreepropertybrowser.cpp b/sdk/libraries/qtpropertybrowser/src/qttreepropertybrowser.cpp
index fc1e36d..056238e 100644
--- a/sdk/libraries/qtpropertybrowser/src/qttreepropertybrowser.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qttreepropertybrowser.cpp
@@ -39,17 +39,17 @@
#include "qttreepropertybrowser.h"
-#include <QtCore/QSet>
-#include <QtGui/QIcon>
-#include <QtGui/QTreeWidget>
-#include <QtGui/QItemDelegate>
-#include <QtGui/QHBoxLayout>
-#include <QtGui/QHeaderView>
-#include <QtGui/QPainter>
-#include <QtGui/QApplication>
-#include <QtGui/QFocusEvent>
-#include <QtGui/QStyle>
-#include <QtGui/QPalette>
+#include <QSet>
+#include <QIcon>
+#include <QTreeWidget>
+#include <QItemDelegate>
+#include <QHBoxLayout>
+#include <QHeaderView>
+#include <QPainter>
+#include <QApplication>
+#include <QFocusEvent>
+#include <QStyle>
+#include <QPalette>
#if QT_VERSION >= 0x040400
QT_BEGIN_NAMESPACE
@@ -463,16 +463,17 @@ void QtTreePropertyBrowserPrivate::init(QWidget *parent) {
m_treeWidget->setColumnCount(2);
QStringList labels;
- labels.append(QApplication::translate("QtTreePropertyBrowser", "Property", 0, QApplication::UnicodeUTF8));
- labels.append(QApplication::translate("QtTreePropertyBrowser", "Value", 0, QApplication::UnicodeUTF8));
+ labels.append(QApplication::translate("QtTreePropertyBrowser", "Property", 0));
+ labels.append(QApplication::translate("QtTreePropertyBrowser", "Value", 0));
m_treeWidget->setHeaderLabels(labels);
m_treeWidget->setAlternatingRowColors(true);
m_treeWidget->setEditTriggers(QAbstractItemView::EditKeyPressed);
m_delegate = new QtPropertyEditorDelegate(parent);
m_delegate->setEditorPrivate(this);
m_treeWidget->setItemDelegate(m_delegate);
- m_treeWidget->header()->setMovable(false);
- m_treeWidget->header()->setResizeMode(QHeaderView::Stretch);
+ // Deprecated in Qt5
+ /* m_treeWidget->header()->setMovable(false);
+ m_treeWidget->header()->setResizeMode(QHeaderView::Stretch);*/
m_expandIcon = drawIndicatorIcon(q_ptr->palette(), q_ptr->style());
@@ -860,7 +861,8 @@ void QtTreePropertyBrowser::setResizeMode(QtTreePropertyBrowser::ResizeMode mode
m = QHeaderView::Stretch;
break;
}
- d_ptr->m_treeWidget->header()->setResizeMode(m);
+ // deprecated in Qt5
+ //d_ptr->m_treeWidget->header()->setResizeMode(m);
}
/*!
diff --git a/sdk/libraries/qtpropertybrowser/src/qtvariantproperty.cpp b/sdk/libraries/qtpropertybrowser/src/qtvariantproperty.cpp
index 4e9f65a..232fb65 100644
--- a/sdk/libraries/qtpropertybrowser/src/qtvariantproperty.cpp
+++ b/sdk/libraries/qtpropertybrowser/src/qtvariantproperty.cpp
@@ -1553,77 +1553,77 @@ void QtVariantPropertyManager::setValue(QtProperty *property, const QVariant &va
QtAbstractPropertyManager *manager = internProp->propertyManager();
if (QtIntPropertyManager *intManager = qobject_cast<QtIntPropertyManager *>(manager)) {
- intManager->setValue(internProp, qVariantValue<int>(val));
+ intManager->setValue(internProp, val.value<int>());
return;
} else if (QtDoublePropertyManager *doubleManager = qobject_cast<QtDoublePropertyManager *>(manager)) {
- doubleManager->setValue(internProp, qVariantValue<double>(val));
+ doubleManager->setValue(internProp, val.value<double>());
return;
} else if (QtBoolPropertyManager *boolManager = qobject_cast<QtBoolPropertyManager *>(manager)) {
- boolManager->setValue(internProp, qVariantValue<bool>(val));
+ boolManager->setValue(internProp, val.value<bool>());
return;
} else if (QtStringPropertyManager *stringManager = qobject_cast<QtStringPropertyManager *>(manager)) {
- stringManager->setValue(internProp, qVariantValue<QString>(val));
+ stringManager->setValue(internProp, val.value<QString>());
return;
} else if (QtDatePropertyManager *dateManager = qobject_cast<QtDatePropertyManager *>(manager)) {
- dateManager->setValue(internProp, qVariantValue<QDate>(val));
+ dateManager->setValue(internProp, val.value<QDate>());
return;
} else if (QtTimePropertyManager *timeManager = qobject_cast<QtTimePropertyManager *>(manager)) {
- timeManager->setValue(internProp, qVariantValue<QTime>(val));
+ timeManager->setValue(internProp, val.value<QTime>());
return;
} else if (QtDateTimePropertyManager *dateTimeManager = qobject_cast<QtDateTimePropertyManager *>(manager)) {
- dateTimeManager->setValue(internProp, qVariantValue<QDateTime>(val));
+ dateTimeManager->setValue(internProp, val.value<QDateTime>());
return;
} else if (QtKeySequencePropertyManager *keySequenceManager = qobject_cast<QtKeySequencePropertyManager *>(manager)) {
- keySequenceManager->setValue(internProp, qVariantValue<QKeySequence>(val));
+ keySequenceManager->setValue(internProp, val.value<QKeySequence>());
return;
} else if (QtCharPropertyManager *charManager = qobject_cast<QtCharPropertyManager *>(manager)) {
- charManager->setValue(internProp, qVariantValue<QChar>(val));
+ charManager->setValue(internProp, val.value<QChar>());
return;
} else if (QtLocalePropertyManager *localeManager = qobject_cast<QtLocalePropertyManager *>(manager)) {
- localeManager->setValue(internProp, qVariantValue<QLocale>(val));
+ localeManager->setValue(internProp, val.value<QLocale>());
return;
} else if (QtPointPropertyManager *pointManager = qobject_cast<QtPointPropertyManager *>(manager)) {
- pointManager->setValue(internProp, qVariantValue<QPoint>(val));
+ pointManager->setValue(internProp, val.value<QPoint>());
return;
} else if (QtPointFPropertyManager *pointFManager = qobject_cast<QtPointFPropertyManager *>(manager)) {
- pointFManager->setValue(internProp, qVariantValue<QPointF>(val));
+ pointFManager->setValue(internProp, val.value<QPointF>());
return;
} else if (QtSizePropertyManager *sizeManager = qobject_cast<QtSizePropertyManager *>(manager)) {
- sizeManager->setValue(internProp, qVariantValue<QSize>(val));
+ sizeManager->setValue(internProp, val.value<QSize>());
return;
} else if (QtSizeFPropertyManager *sizeFManager = qobject_cast<QtSizeFPropertyManager *>(manager)) {
- sizeFManager->setValue(internProp, qVariantValue<QSizeF>(val));
+ sizeFManager->setValue(internProp, val.value<QSizeF>());
return;
} else if (QtRectPropertyManager *rectManager = qobject_cast<QtRectPropertyManager *>(manager)) {
- rectManager->setValue(internProp, qVariantValue<QRect>(val));
+ rectManager->setValue(internProp, val.value<QRect>());
return;
} else if (QtRectFPropertyManager *rectFManager = qobject_cast<QtRectFPropertyManager *>(manager)) {
- rectFManager->setValue(internProp, qVariantValue<QRectF>(val));
+ rectFManager->setValue(internProp, val.value<QRectF>());
return;
} else if (QtColorPropertyManager *colorManager = qobject_cast<QtColorPropertyManager *>(manager)) {
- colorManager->setValue(internProp, qVariantValue<QColor>(val));
+ colorManager->setValue(internProp, val.value<QColor>());
return;
} else if (QtEnumPropertyManager *enumManager = qobject_cast<QtEnumPropertyManager *>(manager)) {
- enumManager->setValue(internProp, qVariantValue<int>(val));
+ enumManager->setValue(internProp, val.value<int>());
return;
} else if (QtSizePolicyPropertyManager *sizePolicyManager =
qobject_cast<QtSizePolicyPropertyManager *>(manager)) {
- sizePolicyManager->setValue(internProp, qVariantValue<QSizePolicy>(val));
+ sizePolicyManager->setValue(internProp, val.value<QSizePolicy>());
return;
} else if (QtFontPropertyManager *fontManager = qobject_cast<QtFontPropertyManager *>(manager)) {
- fontManager->setValue(internProp, qVariantValue<QFont>(val));
+ fontManager->setValue(internProp, val.value<QFont>());
return;
// CAMITK ADDED
} else if (QtVector3DPropertyManager *vector3DManager = qobject_cast<QtVector3DPropertyManager *>(manager)) {
- vector3DManager->setValue(internProp, qVariantValue<QVector3D>(val));
+ vector3DManager->setValue(internProp, val.value<QVector3D>());
return;
#ifndef QT_NO_CURSOR
} else if (QtCursorPropertyManager *cursorManager = qobject_cast<QtCursorPropertyManager *>(manager)) {
- cursorManager->setValue(internProp, qVariantValue<QCursor>(val));
+ cursorManager->setValue(internProp, val.value<QCursor>());
return;
#endif
} else if (QtFlagPropertyManager *flagManager = qobject_cast<QtFlagPropertyManager *>(manager)) {
- flagManager->setValue(internProp, qVariantValue<int>(val));
+ flagManager->setValue(internProp, val.value <int>());
return;
}
}
@@ -1640,17 +1640,17 @@ void QtVariantPropertyManager::setValue(QtProperty *property, const QVariant &va
\sa attributeValue(), QtVariantProperty::setAttribute(), attributeChanged()
*/
void QtVariantPropertyManager::setAttribute(QtProperty *property,
- const QString &attribute, const QVariant &value) {
+ const QString &attribute, const QVariant &val) {
QVariant oldAttr = attributeValue(property, attribute);
if (!oldAttr.isValid())
return;
- int attrType = value.userType();
+ int attrType = val.userType();
if (!attrType)
return;
if (attrType != attributeType(propertyType(property), attribute) &&
- !value.canConvert((QVariant::Type)attrType))
+ !val.canConvert((QVariant::Type)attrType))
return;
QtProperty *internProp = propertyToWrappedProperty()->value(property, 0);
@@ -1660,71 +1660,71 @@ void QtVariantPropertyManager::setAttribute(QtProperty *property,
QtAbstractPropertyManager *manager = internProp->propertyManager();
if (QtIntPropertyManager *intManager = qobject_cast<QtIntPropertyManager *>(manager)) {
if (attribute == d_ptr->m_maximumAttribute)
- intManager->setMaximum(internProp, qVariantValue<int>(value));
+ intManager->setMaximum(internProp, val.value<int>());
else if (attribute == d_ptr->m_minimumAttribute)
- intManager->setMinimum(internProp, qVariantValue<int>(value));
+ intManager->setMinimum(internProp, val.value<int>());
else if (attribute == d_ptr->m_singleStepAttribute)
- intManager->setSingleStep(internProp, qVariantValue<int>(value));
+ intManager->setSingleStep(internProp, val.value<int>());
return;
} else if (QtDoublePropertyManager *doubleManager = qobject_cast<QtDoublePropertyManager *>(manager)) {
if (attribute == d_ptr->m_maximumAttribute)
- doubleManager->setMaximum(internProp, qVariantValue<double>(value));
+ doubleManager->setMaximum(internProp, val.value<double>());
if (attribute == d_ptr->m_minimumAttribute)
- doubleManager->setMinimum(internProp, qVariantValue<double>(value));
+ doubleManager->setMinimum(internProp, val.value<double>());
if (attribute == d_ptr->m_singleStepAttribute)
- doubleManager->setSingleStep(internProp, qVariantValue<double>(value));
+ doubleManager->setSingleStep(internProp, val.value<double>());
if (attribute == d_ptr->m_decimalsAttribute)
- doubleManager->setDecimals(internProp, qVariantValue<int>(value));
+ doubleManager->setDecimals(internProp, val.value<int>());
return;
} else if (QtStringPropertyManager *stringManager = qobject_cast<QtStringPropertyManager *>(manager)) {
if (attribute == d_ptr->m_regExpAttribute)
- stringManager->setRegExp(internProp, qVariantValue<QRegExp>(value));
+ stringManager->setRegExp(internProp, val.value<QRegExp>());
if (attribute == d_ptr->m_echoModeAttribute)
- stringManager->setEchoMode(internProp, (EchoMode)qVariantValue<int>(value));
+ stringManager->setEchoMode(internProp, (EchoMode)val.value<int>());
return;
} else if (QtDatePropertyManager *dateManager = qobject_cast<QtDatePropertyManager *>(manager)) {
if (attribute == d_ptr->m_maximumAttribute)
- dateManager->setMaximum(internProp, qVariantValue<QDate>(value));
+ dateManager->setMaximum(internProp, val.value<QDate>());
if (attribute == d_ptr->m_minimumAttribute)
- dateManager->setMinimum(internProp, qVariantValue<QDate>(value));
+ dateManager->setMinimum(internProp, val.value<QDate>());
return;
} else if (QtPointFPropertyManager *pointFManager = qobject_cast<QtPointFPropertyManager *>(manager)) {
if (attribute == d_ptr->m_decimalsAttribute)
- pointFManager->setDecimals(internProp, qVariantValue<int>(value));
+ pointFManager->setDecimals(internProp, val.value<int>());
return;
} else if (QtSizePropertyManager *sizeManager = qobject_cast<QtSizePropertyManager *>(manager)) {
if (attribute == d_ptr->m_maximumAttribute)
- sizeManager->setMaximum(internProp, qVariantValue<QSize>(value));
+ sizeManager->setMaximum(internProp, val.value<QSize>());
if (attribute == d_ptr->m_minimumAttribute)
- sizeManager->setMinimum(internProp, qVariantValue<QSize>(value));
+ sizeManager->setMinimum(internProp, val.value<QSize>());
return;
} else if (QtSizeFPropertyManager *sizeFManager = qobject_cast<QtSizeFPropertyManager *>(manager)) {
if (attribute == d_ptr->m_maximumAttribute)
- sizeFManager->setMaximum(internProp, qVariantValue<QSizeF>(value));
+ sizeFManager->setMaximum(internProp, val.value<QSizeF>());
if (attribute == d_ptr->m_minimumAttribute)
- sizeFManager->setMinimum(internProp, qVariantValue<QSizeF>(value));
+ sizeFManager->setMinimum(internProp, val.value<QSizeF>());
if (attribute == d_ptr->m_decimalsAttribute)
- sizeFManager->setDecimals(internProp, qVariantValue<int>(value));
+ sizeFManager->setDecimals(internProp, val.value<int>());
return;
} else if (QtRectPropertyManager *rectManager = qobject_cast<QtRectPropertyManager *>(manager)) {
if (attribute == d_ptr->m_constraintAttribute)
- rectManager->setConstraint(internProp, qVariantValue<QRect>(value));
+ rectManager->setConstraint(internProp, val.value<QRect>());
return;
} else if (QtRectFPropertyManager *rectFManager = qobject_cast<QtRectFPropertyManager *>(manager)) {
if (attribute == d_ptr->m_constraintAttribute)
- rectFManager->setConstraint(internProp, qVariantValue<QRectF>(value));
+ rectFManager->setConstraint(internProp, val.value<QRectF>());
if (attribute == d_ptr->m_decimalsAttribute)
- rectFManager->setDecimals(internProp, qVariantValue<int>(value));
+ rectFManager->setDecimals(internProp, val.value<int>());
return;
} else if (QtEnumPropertyManager *enumManager = qobject_cast<QtEnumPropertyManager *>(manager)) {
if (attribute == d_ptr->m_enumNamesAttribute)
- enumManager->setEnumNames(internProp, qVariantValue<QStringList>(value));
+ enumManager->setEnumNames(internProp, val.value<QStringList>());
if (attribute == d_ptr->m_enumIconsAttribute)
- enumManager->setEnumIcons(internProp, qVariantValue<QtIconMap>(value));
+ enumManager->setEnumIcons(internProp, val.value<QtIconMap>());
return;
} else if (QtFlagPropertyManager *flagManager = qobject_cast<QtFlagPropertyManager *>(manager)) {
if (attribute == d_ptr->m_flagNamesAttribute)
- flagManager->setFlagNames(internProp, qVariantValue<QStringList>(value));
+ flagManager->setFlagNames(internProp, val.value<QStringList>());
return;
}
}
@@ -1976,87 +1976,87 @@ QtVariantEditorFactory::~QtVariantEditorFactory() {
Reimplemented from the QtAbstractEditorFactory class.
*/
void QtVariantEditorFactory::connectPropertyManager(QtVariantPropertyManager *manager) {
- QList<QtIntPropertyManager *> intPropertyManagers = qFindChildren<QtIntPropertyManager *>(manager);
+ QList<QtIntPropertyManager *> intPropertyManagers = manager->findChildren<QtIntPropertyManager *>();
QListIterator<QtIntPropertyManager *> itInt(intPropertyManagers);
while (itInt.hasNext())
d_ptr->m_spinBoxFactory->addPropertyManager(itInt.next());
- QList<QtDoublePropertyManager *> doublePropertyManagers = qFindChildren<QtDoublePropertyManager *>(manager);
+ QList<QtDoublePropertyManager *> doublePropertyManagers = manager->findChildren<QtDoublePropertyManager *>();
QListIterator<QtDoublePropertyManager *> itDouble(doublePropertyManagers);
while (itDouble.hasNext())
d_ptr->m_doubleSpinBoxFactory->addPropertyManager(itDouble.next());
- QList<QtBoolPropertyManager *> boolPropertyManagers = qFindChildren<QtBoolPropertyManager *>(manager);
+ QList<QtBoolPropertyManager *> boolPropertyManagers = manager->findChildren<QtBoolPropertyManager *>();
QListIterator<QtBoolPropertyManager *> itBool(boolPropertyManagers);
while (itBool.hasNext())
d_ptr->m_checkBoxFactory->addPropertyManager(itBool.next());
- QList<QtStringPropertyManager *> stringPropertyManagers = qFindChildren<QtStringPropertyManager *>(manager);
+ QList<QtStringPropertyManager *> stringPropertyManagers = manager->findChildren<QtStringPropertyManager *>();
QListIterator<QtStringPropertyManager *> itString(stringPropertyManagers);
while (itString.hasNext())
d_ptr->m_lineEditFactory->addPropertyManager(itString.next());
- QList<QtDatePropertyManager *> datePropertyManagers = qFindChildren<QtDatePropertyManager *>(manager);
+ QList<QtDatePropertyManager *> datePropertyManagers = manager->findChildren<QtDatePropertyManager *>();
QListIterator<QtDatePropertyManager *> itDate(datePropertyManagers);
while (itDate.hasNext())
d_ptr->m_dateEditFactory->addPropertyManager(itDate.next());
- QList<QtTimePropertyManager *> timePropertyManagers = qFindChildren<QtTimePropertyManager *>(manager);
+ QList<QtTimePropertyManager *> timePropertyManagers = manager->findChildren<QtTimePropertyManager *>();
QListIterator<QtTimePropertyManager *> itTime(timePropertyManagers);
while (itTime.hasNext())
d_ptr->m_timeEditFactory->addPropertyManager(itTime.next());
- QList<QtDateTimePropertyManager *> dateTimePropertyManagers = qFindChildren<QtDateTimePropertyManager *>(manager);
+ QList<QtDateTimePropertyManager *> dateTimePropertyManagers = manager->findChildren<QtDateTimePropertyManager *>();
QListIterator<QtDateTimePropertyManager *> itDateTime(dateTimePropertyManagers);
while (itDateTime.hasNext())
d_ptr->m_dateTimeEditFactory->addPropertyManager(itDateTime.next());
- QList<QtKeySequencePropertyManager *> keySequencePropertyManagers = qFindChildren<QtKeySequencePropertyManager *>(manager);
+ QList<QtKeySequencePropertyManager *> keySequencePropertyManagers = manager->findChildren<QtKeySequencePropertyManager *>();
QListIterator<QtKeySequencePropertyManager *> itKeySequence(keySequencePropertyManagers);
while (itKeySequence.hasNext())
d_ptr->m_keySequenceEditorFactory->addPropertyManager(itKeySequence.next());
- QList<QtCharPropertyManager *> charPropertyManagers = qFindChildren<QtCharPropertyManager *>(manager);
+ QList<QtCharPropertyManager *> charPropertyManagers = manager->findChildren<QtCharPropertyManager *>();
QListIterator<QtCharPropertyManager *> itChar(charPropertyManagers);
while (itChar.hasNext())
d_ptr->m_charEditorFactory->addPropertyManager(itChar.next());
- QList<QtLocalePropertyManager *> localePropertyManagers = qFindChildren<QtLocalePropertyManager *>(manager);
+ QList<QtLocalePropertyManager *> localePropertyManagers = manager->findChildren<QtLocalePropertyManager *>();
QListIterator<QtLocalePropertyManager *> itLocale(localePropertyManagers);
while (itLocale.hasNext())
d_ptr->m_comboBoxFactory->addPropertyManager(itLocale.next()->subEnumPropertyManager());
- QList<QtPointPropertyManager *> pointPropertyManagers = qFindChildren<QtPointPropertyManager *>(manager);
+ QList<QtPointPropertyManager *> pointPropertyManagers = manager->findChildren<QtPointPropertyManager *>();
QListIterator<QtPointPropertyManager *> itPoint(pointPropertyManagers);
while (itPoint.hasNext())
d_ptr->m_spinBoxFactory->addPropertyManager(itPoint.next()->subIntPropertyManager());
- QList<QtPointFPropertyManager *> pointFPropertyManagers = qFindChildren<QtPointFPropertyManager *>(manager);
+ QList<QtPointFPropertyManager *> pointFPropertyManagers = manager->findChildren<QtPointFPropertyManager *>();
QListIterator<QtPointFPropertyManager *> itPointF(pointFPropertyManagers);
while (itPointF.hasNext())
d_ptr->m_doubleSpinBoxFactory->addPropertyManager(itPointF.next()->subDoublePropertyManager());
- QList<QtSizePropertyManager *> sizePropertyManagers = qFindChildren<QtSizePropertyManager *>(manager);
+ QList<QtSizePropertyManager *> sizePropertyManagers = manager->findChildren<QtSizePropertyManager *>();
QListIterator<QtSizePropertyManager *> itSize(sizePropertyManagers);
while (itSize.hasNext())
d_ptr->m_spinBoxFactory->addPropertyManager(itSize.next()->subIntPropertyManager());
- QList<QtSizeFPropertyManager *> sizeFPropertyManagers = qFindChildren<QtSizeFPropertyManager *>(manager);
+ QList<QtSizeFPropertyManager *> sizeFPropertyManagers = manager->findChildren<QtSizeFPropertyManager *>();
QListIterator<QtSizeFPropertyManager *> itSizeF(sizeFPropertyManagers);
while (itSizeF.hasNext())
d_ptr->m_doubleSpinBoxFactory->addPropertyManager(itSizeF.next()->subDoublePropertyManager());
- QList<QtRectPropertyManager *> rectPropertyManagers = qFindChildren<QtRectPropertyManager *>(manager);
+ QList<QtRectPropertyManager *> rectPropertyManagers = manager->findChildren<QtRectPropertyManager *>();
QListIterator<QtRectPropertyManager *> itRect(rectPropertyManagers);
while (itRect.hasNext())
d_ptr->m_spinBoxFactory->addPropertyManager(itRect.next()->subIntPropertyManager());
- QList<QtRectFPropertyManager *> rectFPropertyManagers = qFindChildren<QtRectFPropertyManager *>(manager);
+ QList<QtRectFPropertyManager *> rectFPropertyManagers = manager->findChildren<QtRectFPropertyManager *>();
QListIterator<QtRectFPropertyManager *> itRectF(rectFPropertyManagers);
while (itRectF.hasNext())
d_ptr->m_doubleSpinBoxFactory->addPropertyManager(itRectF.next()->subDoublePropertyManager());
- QList<QtColorPropertyManager *> colorPropertyManagers = qFindChildren<QtColorPropertyManager *>(manager);
+ QList<QtColorPropertyManager *> colorPropertyManagers = manager->findChildren<QtColorPropertyManager *>();
QListIterator<QtColorPropertyManager *> itColor(colorPropertyManagers);
while (itColor.hasNext()) {
QtColorPropertyManager *manager = itColor.next();
@@ -2064,12 +2064,12 @@ void QtVariantEditorFactory::connectPropertyManager(QtVariantPropertyManager *ma
d_ptr->m_spinBoxFactory->addPropertyManager(manager->subIntPropertyManager());
}
- QList<QtEnumPropertyManager *> enumPropertyManagers = qFindChildren<QtEnumPropertyManager *>(manager);
+ QList<QtEnumPropertyManager *> enumPropertyManagers = manager->findChildren<QtEnumPropertyManager *>();
QListIterator<QtEnumPropertyManager *> itEnum(enumPropertyManagers);
while (itEnum.hasNext())
d_ptr->m_comboBoxFactory->addPropertyManager(itEnum.next());
- QList<QtSizePolicyPropertyManager *> sizePolicyPropertyManagers = qFindChildren<QtSizePolicyPropertyManager *>(manager);
+ QList<QtSizePolicyPropertyManager *> sizePolicyPropertyManagers = manager->findChildren<QtSizePolicyPropertyManager *>();
QListIterator<QtSizePolicyPropertyManager *> itSizePolicy(sizePolicyPropertyManagers);
while (itSizePolicy.hasNext()) {
QtSizePolicyPropertyManager *manager = itSizePolicy.next();
@@ -2077,7 +2077,7 @@ void QtVariantEditorFactory::connectPropertyManager(QtVariantPropertyManager *ma
d_ptr->m_comboBoxFactory->addPropertyManager(manager->subEnumPropertyManager());
}
- QList<QtFontPropertyManager *> fontPropertyManagers = qFindChildren<QtFontPropertyManager *>(manager);
+ QList<QtFontPropertyManager *> fontPropertyManagers = manager->findChildren<QtFontPropertyManager *>();
QListIterator<QtFontPropertyManager *> itFont(fontPropertyManagers);
while (itFont.hasNext()) {
QtFontPropertyManager *manager = itFont.next();
@@ -2087,12 +2087,12 @@ void QtVariantEditorFactory::connectPropertyManager(QtVariantPropertyManager *ma
d_ptr->m_checkBoxFactory->addPropertyManager(manager->subBoolPropertyManager());
}
- QList<QtCursorPropertyManager *> cursorPropertyManagers = qFindChildren<QtCursorPropertyManager *>(manager);
+ QList<QtCursorPropertyManager *> cursorPropertyManagers = manager->findChildren<QtCursorPropertyManager *>();
QListIterator<QtCursorPropertyManager *> itCursor(cursorPropertyManagers);
while (itCursor.hasNext())
d_ptr->m_cursorEditorFactory->addPropertyManager(itCursor.next());
- QList<QtFlagPropertyManager *> flagPropertyManagers = qFindChildren<QtFlagPropertyManager *>(manager);
+ QList<QtFlagPropertyManager *> flagPropertyManagers = manager->findChildren<QtFlagPropertyManager *>();
QListIterator<QtFlagPropertyManager *> itFlag(flagPropertyManagers);
while (itFlag.hasNext())
d_ptr->m_checkBoxFactory->addPropertyManager(itFlag.next()->subBoolPropertyManager());
@@ -2118,87 +2118,87 @@ QWidget *QtVariantEditorFactory::createEditor(QtVariantPropertyManager *manager,
Reimplemented from the QtAbstractEditorFactory class.
*/
void QtVariantEditorFactory::disconnectPropertyManager(QtVariantPropertyManager *manager) {
- QList<QtIntPropertyManager *> intPropertyManagers = qFindChildren<QtIntPropertyManager *>(manager);
+ QList<QtIntPropertyManager *> intPropertyManagers = manager->findChildren<QtIntPropertyManager *>();
QListIterator<QtIntPropertyManager *> itInt(intPropertyManagers);
while (itInt.hasNext())
d_ptr->m_spinBoxFactory->removePropertyManager(itInt.next());
- QList<QtDoublePropertyManager *> doublePropertyManagers = qFindChildren<QtDoublePropertyManager *>(manager);
+ QList<QtDoublePropertyManager *> doublePropertyManagers = manager->findChildren<QtDoublePropertyManager *>();
QListIterator<QtDoublePropertyManager *> itDouble(doublePropertyManagers);
while (itDouble.hasNext())
d_ptr->m_doubleSpinBoxFactory->removePropertyManager(itDouble.next());
- QList<QtBoolPropertyManager *> boolPropertyManagers = qFindChildren<QtBoolPropertyManager *>(manager);
+ QList<QtBoolPropertyManager *> boolPropertyManagers = manager->findChildren<QtBoolPropertyManager *>();
QListIterator<QtBoolPropertyManager *> itBool(boolPropertyManagers);
while (itBool.hasNext())
d_ptr->m_checkBoxFactory->removePropertyManager(itBool.next());
- QList<QtStringPropertyManager *> stringPropertyManagers = qFindChildren<QtStringPropertyManager *>(manager);
+ QList<QtStringPropertyManager *> stringPropertyManagers = manager->findChildren<QtStringPropertyManager *>();
QListIterator<QtStringPropertyManager *> itString(stringPropertyManagers);
while (itString.hasNext())
d_ptr->m_lineEditFactory->removePropertyManager(itString.next());
- QList<QtDatePropertyManager *> datePropertyManagers = qFindChildren<QtDatePropertyManager *>(manager);
+ QList<QtDatePropertyManager *> datePropertyManagers = manager->findChildren<QtDatePropertyManager *>();
QListIterator<QtDatePropertyManager *> itDate(datePropertyManagers);
while (itDate.hasNext())
d_ptr->m_dateEditFactory->removePropertyManager(itDate.next());
- QList<QtTimePropertyManager *> timePropertyManagers = qFindChildren<QtTimePropertyManager *>(manager);
+ QList<QtTimePropertyManager *> timePropertyManagers = manager->findChildren<QtTimePropertyManager *>();
QListIterator<QtTimePropertyManager *> itTime(timePropertyManagers);
while (itTime.hasNext())
d_ptr->m_timeEditFactory->removePropertyManager(itTime.next());
- QList<QtDateTimePropertyManager *> dateTimePropertyManagers = qFindChildren<QtDateTimePropertyManager *>(manager);
+ QList<QtDateTimePropertyManager *> dateTimePropertyManagers = manager->findChildren<QtDateTimePropertyManager *>();
QListIterator<QtDateTimePropertyManager *> itDateTime(dateTimePropertyManagers);
while (itDateTime.hasNext())
d_ptr->m_dateTimeEditFactory->removePropertyManager(itDateTime.next());
- QList<QtKeySequencePropertyManager *> keySequencePropertyManagers = qFindChildren<QtKeySequencePropertyManager *>(manager);
+ QList<QtKeySequencePropertyManager *> keySequencePropertyManagers = manager->findChildren<QtKeySequencePropertyManager *>();
QListIterator<QtKeySequencePropertyManager *> itKeySequence(keySequencePropertyManagers);
while (itKeySequence.hasNext())
d_ptr->m_keySequenceEditorFactory->removePropertyManager(itKeySequence.next());
- QList<QtCharPropertyManager *> charPropertyManagers = qFindChildren<QtCharPropertyManager *>(manager);
+ QList<QtCharPropertyManager *> charPropertyManagers = manager->findChildren<QtCharPropertyManager *>();
QListIterator<QtCharPropertyManager *> itChar(charPropertyManagers);
while (itChar.hasNext())
d_ptr->m_charEditorFactory->removePropertyManager(itChar.next());
- QList<QtLocalePropertyManager *> localePropertyManagers = qFindChildren<QtLocalePropertyManager *>(manager);
+ QList<QtLocalePropertyManager *> localePropertyManagers = manager->findChildren<QtLocalePropertyManager *>();
QListIterator<QtLocalePropertyManager *> itLocale(localePropertyManagers);
while (itLocale.hasNext())
d_ptr->m_comboBoxFactory->removePropertyManager(itLocale.next()->subEnumPropertyManager());
- QList<QtPointPropertyManager *> pointPropertyManagers = qFindChildren<QtPointPropertyManager *>(manager);
+ QList<QtPointPropertyManager *> pointPropertyManagers = manager->findChildren<QtPointPropertyManager *>();
QListIterator<QtPointPropertyManager *> itPoint(pointPropertyManagers);
while (itPoint.hasNext())
d_ptr->m_spinBoxFactory->removePropertyManager(itPoint.next()->subIntPropertyManager());
- QList<QtPointFPropertyManager *> pointFPropertyManagers = qFindChildren<QtPointFPropertyManager *>(manager);
+ QList<QtPointFPropertyManager *> pointFPropertyManagers = manager->findChildren<QtPointFPropertyManager *>();
QListIterator<QtPointFPropertyManager *> itPointF(pointFPropertyManagers);
while (itPointF.hasNext())
d_ptr->m_doubleSpinBoxFactory->removePropertyManager(itPointF.next()->subDoublePropertyManager());
- QList<QtSizePropertyManager *> sizePropertyManagers = qFindChildren<QtSizePropertyManager *>(manager);
+ QList<QtSizePropertyManager *> sizePropertyManagers = manager->findChildren<QtSizePropertyManager *>();
QListIterator<QtSizePropertyManager *> itSize(sizePropertyManagers);
while (itSize.hasNext())
d_ptr->m_spinBoxFactory->removePropertyManager(itSize.next()->subIntPropertyManager());
- QList<QtSizeFPropertyManager *> sizeFPropertyManagers = qFindChildren<QtSizeFPropertyManager *>(manager);
+ QList<QtSizeFPropertyManager *> sizeFPropertyManagers = manager->findChildren<QtSizeFPropertyManager *>();
QListIterator<QtSizeFPropertyManager *> itSizeF(sizeFPropertyManagers);
while (itSizeF.hasNext())
d_ptr->m_doubleSpinBoxFactory->removePropertyManager(itSizeF.next()->subDoublePropertyManager());
- QList<QtRectPropertyManager *> rectPropertyManagers = qFindChildren<QtRectPropertyManager *>(manager);
+ QList<QtRectPropertyManager *> rectPropertyManagers = manager->findChildren<QtRectPropertyManager *>();
QListIterator<QtRectPropertyManager *> itRect(rectPropertyManagers);
while (itRect.hasNext())
d_ptr->m_spinBoxFactory->removePropertyManager(itRect.next()->subIntPropertyManager());
- QList<QtRectFPropertyManager *> rectFPropertyManagers = qFindChildren<QtRectFPropertyManager *>(manager);
+ QList<QtRectFPropertyManager *> rectFPropertyManagers = manager->findChildren<QtRectFPropertyManager *>();
QListIterator<QtRectFPropertyManager *> itRectF(rectFPropertyManagers);
while (itRectF.hasNext())
d_ptr->m_doubleSpinBoxFactory->removePropertyManager(itRectF.next()->subDoublePropertyManager());
- QList<QtColorPropertyManager *> colorPropertyManagers = qFindChildren<QtColorPropertyManager *>(manager);
+ QList<QtColorPropertyManager *> colorPropertyManagers = manager->findChildren<QtColorPropertyManager *>();
QListIterator<QtColorPropertyManager *> itColor(colorPropertyManagers);
while (itColor.hasNext()) {
QtColorPropertyManager *manager = itColor.next();
@@ -2206,12 +2206,12 @@ void QtVariantEditorFactory::disconnectPropertyManager(QtVariantPropertyManager
d_ptr->m_spinBoxFactory->removePropertyManager(manager->subIntPropertyManager());
}
- QList<QtEnumPropertyManager *> enumPropertyManagers = qFindChildren<QtEnumPropertyManager *>(manager);
+ QList<QtEnumPropertyManager *> enumPropertyManagers = manager->findChildren<QtEnumPropertyManager *>();
QListIterator<QtEnumPropertyManager *> itEnum(enumPropertyManagers);
while (itEnum.hasNext())
d_ptr->m_comboBoxFactory->removePropertyManager(itEnum.next());
- QList<QtSizePolicyPropertyManager *> sizePolicyPropertyManagers = qFindChildren<QtSizePolicyPropertyManager *>(manager);
+ QList<QtSizePolicyPropertyManager *> sizePolicyPropertyManagers = manager->findChildren<QtSizePolicyPropertyManager *>();
QListIterator<QtSizePolicyPropertyManager *> itSizePolicy(sizePolicyPropertyManagers);
while (itSizePolicy.hasNext()) {
QtSizePolicyPropertyManager *manager = itSizePolicy.next();
@@ -2219,7 +2219,7 @@ void QtVariantEditorFactory::disconnectPropertyManager(QtVariantPropertyManager
d_ptr->m_comboBoxFactory->removePropertyManager(manager->subEnumPropertyManager());
}
- QList<QtFontPropertyManager *> fontPropertyManagers = qFindChildren<QtFontPropertyManager *>(manager);
+ QList<QtFontPropertyManager *> fontPropertyManagers = manager->findChildren<QtFontPropertyManager *>();
QListIterator<QtFontPropertyManager *> itFont(fontPropertyManagers);
while (itFont.hasNext()) {
QtFontPropertyManager *manager = itFont.next();
@@ -2229,12 +2229,12 @@ void QtVariantEditorFactory::disconnectPropertyManager(QtVariantPropertyManager
d_ptr->m_checkBoxFactory->removePropertyManager(manager->subBoolPropertyManager());
}
- QList<QtCursorPropertyManager *> cursorPropertyManagers = qFindChildren<QtCursorPropertyManager *>(manager);
+ QList<QtCursorPropertyManager *> cursorPropertyManagers = manager->findChildren<QtCursorPropertyManager *>();
QListIterator<QtCursorPropertyManager *> itCursor(cursorPropertyManagers);
while (itCursor.hasNext())
d_ptr->m_cursorEditorFactory->removePropertyManager(itCursor.next());
- QList<QtFlagPropertyManager *> flagPropertyManagers = qFindChildren<QtFlagPropertyManager *>(manager);
+ QList<QtFlagPropertyManager *> flagPropertyManagers = manager->findChildren<QtFlagPropertyManager *>();
QListIterator<QtFlagPropertyManager *> itFlag(flagPropertyManagers);
while (itFlag.hasNext())
d_ptr->m_checkBoxFactory->removePropertyManager(itFlag.next()->subBoolPropertyManager());
diff --git a/sdk/testapplications/testactions/CMakeLists.txt b/sdk/testapplications/testactions/CMakeLists.txt
index dd8505e..896d842 100644
--- a/sdk/testapplications/testactions/CMakeLists.txt
+++ b/sdk/testapplications/testactions/CMakeLists.txt
@@ -3,7 +3,6 @@
# CamiTK Open Source CEP Set
#
#--------------------------------------------
-cmake_minimum_required(VERSION 2.6)
camitk_application( ADDITIONAL_SOURCES CommandLineOptions.cxx CommandLineOptions.hxx CommandLineOptions.ixx
CEP_NAME SDK
DESCRIPTION "Test application to test actions"
diff --git a/sdk/testapplications/testactions/CommonTestsActions.cpp b/sdk/testapplications/testactions/CommonTestsActions.cpp
deleted file mode 100644
index 31f46f2..0000000
--- a/sdk/testapplications/testactions/CommonTestsActions.cpp
+++ /dev/null
@@ -1,148 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// -- Core stuff
-#include <Application.h>
-#include <MainWindow.h>
-#include <InteractiveViewer.h>
-#include <Core.h>
-#include <ExtensionManager.h>
-#include <Action.h>
-
-
-using namespace camitk;
-
-// CLI stuff
-#include "CommandLineOptions.hxx"
-
-// Description:
-//This is a test application, it is not intended to be used as a CamiTK application.
-//-a <file> action to load (.dll file)
-//-i <file> is the file to open - will not be modified
-
-// usage for this application
-void usage(char *appName) {
- std::cerr << appName << std::endl;
- std::cerr << std::endl;
- std::cerr << "Usage: " << appName << " [options]" << std::endl;
- std::cerr << "Build using " << Core::version << std::endl;
- std::cerr << std::endl;
- std::cerr << "Options:" << endl;
- options::print_usage(std::cerr);
-}
-
-int main(int argc, char *argv[]) {
- try {
-
- int end; // End of options.
- options o(argc, argv, end);
- int ret = EXIT_SUCCESS;
-
- // if specific help or no options provided
- if ( o.help()
- || (o.input() == "" && o.action() == "")
- ) {
- std::cout << "Help or no arguments: " << std::endl;
- usage(argv[0]);
- } else if( o.input() == "" || o.action() == "" ) {
- std::cout << "Bad arguments: " << std::endl;
- usage(argv[0]);
- } else {
- std::cout << "Arguments OK: " << std::endl;
- bool extOpen = false;
- // init the camitk application context
- Application a( "testactions", argc, argv, false, false );// No autoload + registerFileExtension false to avoid the execution of this testapp hampered by PopUp message
-
- // avoid all redirection to console
- MainWindow *defaultMainWindow = dynamic_cast<MainWindow*>(a.getMainWindow());
- defaultMainWindow->redirectToConsole(false);
-
- // Remember, autoload search for extension dynamic libraries in the lib/actions and lib/components subdirectories of
- // the following trees:
- // * current working directory (build)
- // * local installation
- // * global installation
- // If it finds duplicates, it keeps the first found.
- ExtensionManager::autoload( ExtensionManager::COMPONENT );
-
- std::cout << "Open data file " << o.input() << std::endl;
- Component* comp = Application::open( o.input().data() );
-
- if( comp ) {
- std::cout << "Component loaded: " << o.input() << std::endl;
- Action::ApplyStatus status;
- comp->setSelected( true, true );
- // Find the actions directory, according to this application's location
- // If the application directory is in the build/bin directory, then the action directory will point on the build/lib/camitk-version/actions directory
- // Note : do not use Core::getActionDirectories as it uses Core::getCurrentWorkingDir which is clearly less accurate
- QString actionsDirectory = Application::instance()->applicationDirPath() + "/../lib/" + Core::shortVersion + "/actions/";
-
- //Load the action extension defined in the entry parameters
- if (!(actionsDirectory.isEmpty())
- && (ExtensionManager::loadExtension(ExtensionManager::ACTION, actionsDirectory + o.action().data()))) {
- std::cout << "load action extension "<< o.action().data() << std::endl;
- ActionList actl = Application::getActions( comp );
- if( !( actl.isEmpty() )) {
- std::cout << "Action list is not empty. " << std::endl;
-
- foreach( Action *action , actl ) {
- std::cout << "Test action " << action->getName().toStdString() << std::endl;
- action->setInputComponent( comp );
- std::cout << action->getName().toStdString() << " call apply() " << std::endl;
- status = action->apply();
-
- if( status != Action::SUCCESS ) {
- std::cout << "Apply action " << action->getName().toStdString() << " on file " << comp->getFileName().toStdString() << " FAILED" << std::endl;
- ret = EXIT_FAILURE;
- } else {
- std::cout << "Apply action " << action->getName().toStdString() << " on file " << comp->getFileName().toStdString() << " SUCCESS" << std::endl;
- }
- }
- } else {
- //you cannot apply this action extension on this comp
- std::cout << "this action EXTENSION is not compatible with this component type - " << o.action() << std::endl;
- }
- } else {
- std::cout << "Loading action extension :" << o.action() << " FAILED" << std::endl;
- }
- } else {
- std::cout << "Loading data file :" << o.input() << " FAILED" << std::endl;
- }
- }
- return ret;
- } catch (camitk::AbortException& e) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
- std::cout << argv[0] << " aborted..." << std::endl << "camitk AbortException:" << std::endl << e.what() << std::endl;
- return EXIT_FAILURE;
- } catch (std::exception& e) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
- std::cout << argv[0] << " aborted..." << std::endl << "std AbortException:" << std::endl << e.what() << std::endl;
- return EXIT_FAILURE;
- } catch (...) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "Unknown Exception");
- std::cout << argv[0] << " aborted..." << std::endl << "Unknown Exception" << std::endl;
- return EXIT_FAILURE;
- }
-}
diff --git a/sdk/testapplications/testactions/main.cpp b/sdk/testapplications/testactions/main.cpp
new file mode 100644
index 0000000..7ba6b53
--- /dev/null
+++ b/sdk/testapplications/testactions/main.cpp
@@ -0,0 +1,151 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// -- Core stuff
+#include <Application.h>
+#include <MainWindow.h>
+#include <InteractiveViewer.h>
+#include <Core.h>
+#include <ExtensionManager.h>
+#include <Action.h>
+
+
+using namespace camitk;
+
+// CLI stuff
+#include "CommandLineOptions.hxx"
+
+// Description:
+//This is a test application, it is not intended to be used as a CamiTK application.
+//-a <file> action to load (.dll file)
+//-i <file> is the file to open - will not be modified
+
+// usage for this application
+void usage(char *appName) {
+ std::cerr << appName << std::endl;
+ std::cerr << std::endl;
+ std::cerr << "Usage: " << appName << " [options]" << std::endl;
+ std::cerr << "Build using " << Core::version << std::endl;
+ std::cerr << std::endl;
+ std::cerr << "Options:" << endl;
+ options::print_usage(std::cerr);
+}
+
+int main(int argc, char *argv[]) {
+ try {
+
+ int end; // End of options.
+ options o(argc, argv, end);
+
+ // if specific help or no options provided
+ if ( o.help()
+ || (o.input() == "" && o.action() == "")
+ ) {
+ std::cout << "Help or no arguments: " << std::endl;
+ usage(argv[0]);
+ return EXIT_SUCCESS;
+ } else if( o.input() == "" || o.action() == "" ) {
+ std::cout << "Bad arguments: " << std::endl;
+ usage(argv[0]);
+ return EXIT_FAILURE;
+ } else {
+ std::cout << "Arguments OK: " << std::endl;
+ bool extOpen = false;
+ // init the camitk application contextEXIT_SUCCESS
+ Application a( "testactions", argc, argv, false, false );// No autoload + registerFileExtension false to avoid the execution of this testapp hampered by PopUp message
+
+ // avoid all redirection to console
+ MainWindow *defaultMainWindow = dynamic_cast<MainWindow*>(a.getMainWindow());
+ defaultMainWindow->redirectToConsole(false);
+
+ // Remember, autoload search for extension dynamic libraries in the lib/actions and lib/components subdirectories of
+ // the following trees:
+ // * current working directory (build)
+ // * local installation
+ // * global installation
+ // If it finds duplicates, it keeps the first found.
+ ExtensionManager::autoload( ExtensionManager::COMPONENT );
+
+ std::cout << "Open data file " << o.input() << std::endl;
+ Component* comp = Application::open( o.input().data() );
+
+ if( comp ) {
+ std::cout << "Component loaded: " << o.input() << std::endl;
+ Action::ApplyStatus status;
+ comp->setSelected( true, true );
+ // Find the actions directory, according to this application's location
+ // If the application directory is in the build/bin directory, then the action directory will point on the build/lib/camitk-version/actions directory
+ // Note : do not use Core::getActionDirectories as it uses Core::getCurrentWorkingDir which is clearly less accurate
+ QString actionsDirectory = Application::instance()->applicationDirPath() + "/../lib/" + Core::shortVersion + "/actions/";
+
+ //Load the action extension defined in the entry parameters
+ if (!(actionsDirectory.isEmpty())
+ && (ExtensionManager::loadExtension(ExtensionManager::ACTION, actionsDirectory + o.action().data()))) {
+ std::cout << "Loaded action extension "<< o.action().data() << std::endl;
+ // ActionExtension* actionExtension = ExtensionManager::getActionExtensions().value(o.action().data());
+ ActionList actl = Application::getActions( comp );
+ if( !( actl.isEmpty() )) {
+ std::cout << "Action extension contains " << actl.size() << "actions." << std::endl;
+
+ foreach( Action *action , actl ) {
+ std::cout << "Test action " << action->getName().toStdString() << std::endl;
+ action->setInputComponent( comp );
+ std::cout << action->getName().toStdString() << "Call apply() ...";
+ status = action->apply();
+ std::cout << "ok." << std::endl;
+
+ if( status != Action::SUCCESS ) {
+ std::cout << "Apply action " << action->getName().toStdString() << " on file " << comp->getFileName().toStdString() << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ } else {
+ std::cout << "Apply action " << action->getName().toStdString() << " on file " << comp->getFileName().toStdString() << " SUCCESS" << std::endl;
+ return EXIT_SUCCESS;
+ }
+ }
+ } else {
+ //you cannot apply this action extension on this comp
+ std::cout << "this action EXTENSION is not compatible with this component type - " << o.action() << std::endl;
+ return EXIT_SUCCESS;
+ }
+ } else {
+ std::cout << "Loading action extension :" << o.action() << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ }
+ } else {
+ std::cout << "Loading data file :" << o.input() << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ }
+ }
+ } catch (camitk::AbortException& e) {
+ std::cout << argv[0] << " aborted..." << std::endl << "camitk AbortException:" << std::endl << e.what() << std::endl;
+ return EXIT_FAILURE;
+ } catch (std::exception& e) {
+ std::cout << argv[0] << " aborted..." << std::endl << "std AbortException:" << std::endl << e.what() << std::endl;
+ return EXIT_FAILURE;
+ } catch (...) {
+ std::cout << argv[0] << " aborted..." << std::endl << "Unknown Exception" << std::endl;
+ return EXIT_FAILURE;
+ }
+}
diff --git a/sdk/testapplications/testcomponents/CMakeLists.txt b/sdk/testapplications/testcomponents/CMakeLists.txt
index bd152ad..7bbb08e 100644
--- a/sdk/testapplications/testcomponents/CMakeLists.txt
+++ b/sdk/testapplications/testcomponents/CMakeLists.txt
@@ -3,7 +3,6 @@
# CamiTK Open Source CEP Set
#
#--------------------------------------------
-cmake_minimum_required(VERSION 2.6)
camitk_application( CEP_NAME SDK
ADDITIONAL_SOURCES CommandLineOptions.cxx CommandLineOptions.hxx CommandLineOptions.ixx
DESCRIPTION "Test application to load components and interact with them"
diff --git a/sdk/testapplications/testcomponents/CommonTestsComponents.cpp b/sdk/testapplications/testcomponents/CommonTestsComponents.cpp
deleted file mode 100644
index 277c797..0000000
--- a/sdk/testapplications/testcomponents/CommonTestsComponents.cpp
+++ /dev/null
@@ -1,135 +0,0 @@
-/*****************************************************************************
- * $CAMITK_LICENCE_BEGIN$
- *
- * CamiTK - Computer Assisted Medical Intervention ToolKit
- * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
- *
- * Visit http://camitk.imag.fr for more information
- *
- * This file is part of CamiTK.
- *
- * CamiTK is free software: you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License version 3
- * only, as published by the Free Software Foundation.
- *
- * CamiTK is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License version 3 for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
- *
- * $CAMITK_LICENCE_END$
- ****************************************************************************/
-
-// -- Core stuff
-#include <Application.h>
-#include <MainWindow.h>
-#include <InteractiveViewer.h>
-#include <Core.h>
-#include <ExtensionManager.h>
-#include <stdlib.h>
-#include <QDir>
-
-// Different test levels to procede
-const int LEVEL1 = 1;// Open application - Open extension - Open component
-const int LEVEL2 = 2;// Save component
-
-using namespace camitk;
-
-// CLI stuff
-#include "CommandLineOptions.hxx"
-
-// Description:
-//This is a test application, it is not intended to be used as a CamiTK application
-//-i <file> is the file to open
-//-o <path> is the directory where the output file will be saved
-//-c <component> is the component extension to be tested (provide full path of the dynamic library)
-//-l <level> is the test level to proceed
-
-// usage for this application
-void usage(char *appName) {
- std::cerr << appName << std::endl;
- std::cerr << std::endl;
- std::cerr << "Usage: " << appName << " [options]" << std::endl;
- std::cerr << "Build using " << Core::version << std::endl;
- std::cerr << std::endl;
- std::cerr << "Options:" << endl;
- options::print_usage(std::cerr);
-}
-
-int main(int argc, char *argv[]) {
- try {
- int end; // End of options.
- options o(argc, argv, end);
- int ret = EXIT_SUCCESS;
-
- if ( o.help()
- || (o.input() == "" && o.component() == "" && o.level() == "")
- ) {
- std::cout << "Help or no arguments: " << std::endl;
- usage(argv[0]);
- } else if (o.input() == "" || o.component() == "" || o.level() == "") {
- std::cout << "Bad arguments: " << std::endl;
- usage(argv[0]);
- } else {
- std::cout << "Arguments OK: " << std::endl;
- QFileInfo ifile(o.input().c_str());
- QFileInfo icomponent(o.component().c_str());
- QString odirectory;
- if (o.odir() == "") { //optional argument
- odirectory = QDir::temp().absolutePath();
- } else {
- odirectory = o.odir().c_str();
- }
-
- int level = atoi(o.level().c_str());
-
- // init the camitk application context
- Application a("camitk-testcomponents", argc, argv, false, false);//No autoload + registerFileExtension false to avoid the execution of this testapp hampered by PopUp message
-
- // avoid all redirection to console
- MainWindow *defaultMainWindow = dynamic_cast<MainWindow*>(a.getMainWindow());
- defaultMainWindow->redirectToConsole( false );
-
- std::cout << "Load extension: " << icomponent.absoluteFilePath().toStdString() << std::endl;
-
- //Load the component extension defined in the command line
- if ( ExtensionManager::loadExtension(ExtensionManager::COMPONENT, icomponent.absoluteFilePath()) ) {
- Component* comp = Application::open(ifile.absoluteFilePath());
-
- if (comp) {
- std::cout << "Open component: " << ifile.fileName().toStdString() << " SUCCESS" << std::endl;
- comp->setFileName(odirectory + "/" + ifile.fileName());
- if (level >= LEVEL2) {
- std::cout << "Save component: " << ifile.fileName().toStdString() << std::endl;
- if ( !Application::save(comp) ) {
- std::cout << "Save component: " << ifile.fileName().toStdString() << " FAILED" << std::endl;
- ret = EXIT_FAILURE;
- }
- }
- } else {
- std::cout << "Open component: " << ifile.fileName().toStdString() << " FAILED" << std::endl;
- ret = EXIT_FAILURE;
- }
- } else {
- std::cout << "Loading component extension: " << icomponent.fileName().toStdString() << " FAILED" << std::endl;
- }
- }
- return ret;
- } catch (camitk::AbortException& e) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
- std::cout << argv[0] << " aborted..." << std::endl << "camitk AbortException:" << std::endl << e.what() << std::endl;
- return EXIT_FAILURE;
- } catch (std::exception& e) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
- std::cout << argv[0] << " aborted..." << std::endl << "std AbortException:" << std::endl << e.what() << std::endl;
- return EXIT_FAILURE;
- } catch (...) {
- //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "Unknown Exception");
- std::cout << argv[0] << " aborted..." << std::endl << "Unknown Exception" << std::endl;
- return EXIT_FAILURE;
- }
-
-}
diff --git a/sdk/testapplications/testcomponents/main.cpp b/sdk/testapplications/testcomponents/main.cpp
new file mode 100644
index 0000000..6325f06
--- /dev/null
+++ b/sdk/testapplications/testcomponents/main.cpp
@@ -0,0 +1,155 @@
+/*****************************************************************************
+ * $CAMITK_LICENCE_BEGIN$
+ *
+ * CamiTK - Computer Assisted Medical Intervention ToolKit
+ * (c) 2001-2016 Univ. Grenoble Alpes, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
+ *
+ * Visit http://camitk.imag.fr for more information
+ *
+ * This file is part of CamiTK.
+ *
+ * CamiTK is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License version 3
+ * only, as published by the Free Software Foundation.
+ *
+ * CamiTK is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU Lesser General Public License version 3 for more details.
+ *
+ * You should have received a copy of the GNU Lesser General Public License
+ * version 3 along with CamiTK. If not, see <http://www.gnu.org/licenses/>.
+ *
+ * $CAMITK_LICENCE_END$
+ ****************************************************************************/
+
+// -- Core stuff
+#include <Application.h>
+#include <MainWindow.h>
+#include <InteractiveViewer.h>
+#include <Core.h>
+#include <ExtensionManager.h>
+#include <stdlib.h>
+#include <QDir>
+
+// Different test levels to procede
+const int LEVEL1 = 1;// Open application - Open extension - Open component
+const int LEVEL2 = 2;// Open application - Open extension - Open component - Save component - Close component
+
+using namespace camitk;
+
+// CLI stuff
+#include "CommandLineOptions.hxx"
+
+// Description:
+//This is a test application, it is not intended to be used as a CamiTK application
+//-i <file> is the file to open
+//-o <path> is the directory where the output file will be saved
+//-c <component> is the component extension to be tested (provide full path of the dynamic library)
+//-l <level> is the test level to proceed
+
+// usage for this application
+void usage(char *appName) {
+ std::cerr << appName << std::endl;
+ std::cerr << std::endl;
+ std::cerr << "Usage: " << appName << " [options]" << std::endl;
+ std::cerr << "Build using " << Core::version << std::endl;
+ std::cerr << std::endl;
+ std::cerr << "Options:" << endl;
+ options::print_usage(std::cerr);
+}
+
+int main(int argc, char *argv[]) {
+ try {
+ int end; // End of options.
+ options o(argc, argv, end);
+
+ if ( o.help()
+ || (o.input() == "" && o.component() == "" && o.level() == "")
+ ) {
+ std::cout << "Help or no arguments: " << std::endl;
+ usage(argv[0]);
+ return EXIT_SUCCESS;
+ } else if (o.input() == "" || o.component() == "" || o.level() == "") {
+ std::cout << "Bad arguments: " << std::endl;
+ usage(argv[0]);
+ return EXIT_FAILURE;
+ } else {
+ std::cout << "Arguments OK: " << std::endl;
+ QFileInfo ifile(o.input().c_str());
+ QFileInfo icomponent(o.component().c_str());
+ QString odirectory;
+ if (o.odir() == "") { //optional argument
+ odirectory = QDir::temp().absolutePath();
+ } else {
+ odirectory = o.odir().c_str();
+ }
+
+ int level = atoi(o.level().c_str());
+
+ // init the camitk application context
+ Application a("camitk-testcomponents", argc, argv, false, false);//No autoload + registerFileExtension false to avoid the execution of this testapp hampered by PopUp message
+
+ // avoid all redirection to console
+ MainWindow *defaultMainWindow = dynamic_cast<MainWindow*>(a.getMainWindow());
+ defaultMainWindow->redirectToConsole( false );
+
+ std::cout << "Load extension: " << icomponent.absoluteFilePath().toStdString() << std::endl;
+
+ //Load the component extension defined in the command line
+ if ( ExtensionManager::loadExtension(ExtensionManager::COMPONENT, icomponent.absoluteFilePath()) ) {
+ Component* comp = Application::open(ifile.absoluteFilePath());
+
+ if (comp) {
+ std::cout << "Open component: " << ifile.fileName().toStdString() << " SUCCESS" << std::endl;
+ comp->setFileName(odirectory + "/" + ifile.fileName());
+ if (level >= LEVEL2) {
+ std::cout << "Saving component " << ifile.fileName().toStdString();
+ if ( !Application::save(comp) ) {
+ std::cout << "FAILED " << std::endl;
+ return EXIT_FAILURE;
+ }
+ std::cout << " SUCESS " << std::endl;
+ std::cout << "Closing component " << ifile.fileName().toStdString();
+ if ( !Application::close(comp) ) {
+ std::cout << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ }
+ std::cout << " SUCESS " << std::endl;
+ // we successfully saved and closed our component, yehhaww !
+ return EXIT_SUCCESS;
+ }
+ else {
+ if (!Application::close(comp)) {
+ std::cout << "Close component: " << ifile.fileName().toStdString() << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ }
+ else {
+ return EXIT_SUCCESS;
+ }
+ }
+ } else {
+ std::cout << "Open component: " << ifile.fileName().toStdString() << " FAILED" << std::endl;
+ return EXIT_FAILURE;
+ }
+ } else {
+ std::cout << "Loading component extension: " << icomponent.fileName().toStdString() << " FAILED" << std::endl;
+
+ return EXIT_FAILURE;
+ }
+ }
+ } catch (camitk::AbortException& e) {
+ //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
+ std::cout << argv[0] << " aborted..." << std::endl << "camitk AbortException:" << std::endl << e.what() << std::endl;
+ return EXIT_FAILURE;
+ } catch (std::exception& e) {
+ //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "AbortException:" + QString(e.what()));
+ std::cout << argv[0] << " aborted..." << std::endl << "std AbortException:" << std::endl << e.what() << std::endl;
+ return EXIT_FAILURE;
+ } catch (...) {
+ //QMessageBox::warning(NULL, QString(argv[0]) + " aborted...", "Unknown Exception");
+ std::cout << argv[0] << " aborted..." << std::endl << "Unknown Exception" << std::endl;
+ return EXIT_FAILURE;
+ }
+
+}
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/camitk.git
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