[med-svn] [adapterremoval] 01/01: Try to reduce the benchmark length (but no visible change - the pIRS process takes ages to generate several GB sized files)

[Andreas Tille]

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tille pushed a commit to branch master
in repository adapterremoval.

commit 117a7482aea2ee0373f8713ca8d3dc40838b40b7
Author: Andreas Tille <tille at debian.org>
Date:   Thu Aug 4 15:20:57 2016 +0200

    Try to reduce the benchmark length (but no visible change - the pIRS process takes ages to generate several GB sized files)
---
 debian/patches/reduce_benchmark_length.patch | 11 +++++++++++
 debian/patches/series                        |  1 +
 2 files changed, 12 insertions(+)

diff --git a/debian/patches/reduce_benchmark_length.patch b/debian/patches/reduce_benchmark_length.patch
new file mode 100644
index 0000000..2b99101
--- /dev/null
+++ b/debian/patches/reduce_benchmark_length.patch
@@ -0,0 +1,11 @@
+--- a/benchmark/benchmark.sh
++++ b/benchmark/benchmark.sh
+@@ -44,7 +44,7 @@ ADAPTER_ID_INSERT_SIZES=($(seq 250 5 350
+ MAX_THREADS=4
+ 
+ # Number of read (pairs) to simulate using pIRS for each replicate
+-SIMULATED_NREADS=1000000
++SIMULATED_NREADS=100
+ 
+ results=$(mktemp -d /tmp/adapter-benchmark.XXXXXX)
+ echo "*** Results will be found in $results ***"
diff --git a/debian/patches/series b/debian/patches/series
index bc193d6..fb2682a 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 hardening.patch
 adapt-benchmarking.patch
+reduce_benchmark_length.patch

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