[med-svn] [idba] 04/04: Adapt patches + upload to unstable

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository idba.

commit 12107acac67ea7a92fa7d79c4a1f0b7c9b72ab67
Author: Andreas Tille <tille at debian.org>
Date:   Sat Aug 6 00:14:32 2016 +0200

    Adapt patches + upload to unstable
---
 debian/changelog               |  4 ++--
 debian/patches/clang.patch     | 27 ---------------------------
 debian/patches/run_tests.patch | 21 ---------------------
 debian/patches/series          |  2 --
 4 files changed, 2 insertions(+), 52 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index fa7469f..d252a37 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,8 @@
-idba (1.1.3-1) UNRELEASED; urgency=medium
+idba (1.1.3-1) unstable; urgency=medium
 
   * New upstream version
 
- -- Andreas Tille <tille at debian.org>  Sat, 06 Aug 2016 00:09:10 +0200
+ -- Andreas Tille <tille at debian.org>  Sat, 06 Aug 2016 00:11:30 +0200
 
 idba (1.1.2-2) unstable; urgency=medium
 
diff --git a/debian/patches/clang.patch b/debian/patches/clang.patch
deleted file mode 100644
index 1fe3ae3..0000000
--- a/debian/patches/clang.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-Author: Alexander Ovchinnikov <sanek23994 at gmail.com>
-Last-Update: Thu, 19 Jun 2014 17:12:39 -0400
-Bug-Debian: http://bugs.debian.org/752122
-Description: Enable building with clang
-
---- a/src/tools/parallel_rna_blat.cpp
-+++ b/src/tools/parallel_rna_blat.cpp
-@@ -61,7 +61,7 @@ void Append(const string &in_file, const
- 
- void SplitSequenceFile()
- {
--    FastaWriter writers[num_threads];
-+    FastaWriter *writers = static_cast<FastaWriter *>(alloca(sizeof(FastaWriter) * num_threads));
-     for (int i = 0; i < num_threads; ++i)
-         writers[i].Open(split_files[i]);
- 
---- a/src/release/parallel_blat.cpp
-+++ b/src/release/parallel_blat.cpp
-@@ -61,7 +61,7 @@ void Append(const string &in_file, const
- 
- void SplitSequenceFile()
- {
--    FastaWriter writers[num_threads];
-+    FastaWriter *writers = static_cast<FastaWriter *>(alloca(sizeof(FastaWriter) * num_threads));
-     for (int i = 0; i < num_threads; ++i)
-         writers[i].Open(split_files[i]);
- 
diff --git a/debian/patches/run_tests.patch b/debian/patches/run_tests.patch
deleted file mode 100644
index 30d0b71..0000000
--- a/debian/patches/run_tests.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-Description: run test suite during package build 
-Forwarded: yes
-Author: Gert Wollny <gw.fossdev at gmail.com>
-Last-Update: Fri, 1 Jul 2016
-
---- a/test/Makefile.am
-+++ b/test/Makefile.am
-@@ -16,7 +16,7 @@
- short_sequence_unittest_SOURCES = $(top_srcdir)/src/test/short_sequence_unittest.cpp
- hash_map_unittest_SOURCES = $(top_srcdir)/src/test/hash_map_unittest.cpp 
- 
--noinst_PROGRAMS = \
-+check_PROGRAMS = \
- 	compact_sequence_unittest \
- 	hash_table_unittest \
- 	bit_edges_unittest \
-@@ -30,3 +30,4 @@
- 	short_sequence_unittest \
- 	hash_map_unittest 
- 
-+TESTS=$(check_PROGRAMS)
diff --git a/debian/patches/series b/debian/patches/series
index a9a2390..8a37410 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,4 +1,2 @@
 use-atomic-for-mips.patch
-#clang.patch
-run_tests.patch
 spelling.patch

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/idba.git