[med-svn] [permute] branch master updated (5e217cd -> ca5c593)
Andreas Tille
tille at debian.org
Mon Aug 8 07:44:50 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository permute.
from 5e217cd Upload to unstable
new 6808f9c Imported Upstream version 0.9-0
new 6330634 Merge tag 'upstream/0.9-0'
new 5689871 New upstream version
new 157ab37 cme fix dpkg-control
new de8d038 fix autopkgtest
new cadc8fa update d/copyright
new ca5c593 Upload to unstable
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
DESCRIPTION | 21 +-
MD5 | 92 +++----
NAMESPACE | 37 +--
R/Blocks.R | 6 -
R/allPerms.R | 14 +-
R/allStrata.R | 10 +-
R/as.matrix.allPerms.R | 6 +
R/blocks.R | 40 +++
R/check.R | 27 +-
R/fixupCall.R | 10 +-
R/getFoo-methods.R | 129 +--------
R/how.R | 6 +-
R/nobs-methods.R | 3 +
R/numPerms.R | 20 +-
R/permCheck.R | 5 -
R/permuplot.R | 198 --------------
R/permute-deprecated.R | 43 ---
R/permute.R | 15 +-
R/print.how.R | 2 +-
R/print.permutationMatrix.R | 5 +-
R/setFoo-methods.R | 82 +-----
R/shuffle-utils.R | 5 +-
R/shuffle.R | 146 ++++++----
R/shuffle2.R | 122 ---------
R/shuffleSet.R | 216 +++++++++++----
R/shuffleSet2.R | 205 --------------
README.md | 33 +++
build/vignette.rds | Bin 230 -> 226 bytes
data/jackal.rda | Bin 233 -> 233 bytes
debian/changelog | 9 +
debian/control | 10 +-
debian/copyright | 24 +-
debian/tests/run-unit-test | 5 +-
inst/ChangeLog | 58 +++-
inst/NEWS | 97 +++++++
inst/NEWS.Rd | 86 ------
inst/doc/permutations.R | 10 +-
inst/doc/permutations.Rnw | 12 +-
inst/doc/permutations.pdf | Bin 315861 -> 312060 bytes
inst/tests/test-allPerms.R | 127 ---------
inst/tests/test-shuffleSet.R | 42 ---
man/allPerms.Rd | 10 +
man/check.Rd | 112 ++++----
man/how.Rd | 10 +-
man/permCheck-deprecated.Rd | 66 -----
man/permControl-deprecated.Rd | 82 ------
man/permute-deprecated.Rd | 25 --
man/shuffleSet.Rd | 20 +-
tests/Examples/permute-Ex.Rout.save | 370 +++++++++++---------------
tests/{test-all.R => testthat.R} | 6 +-
tests/testthat/test-allPerms.R | 289 ++++++++++++++++++++
tests/testthat/test-as-methods.R | 18 ++
tests/testthat/test-blocks.R | 11 +
{inst/tests => tests/testthat}/test-check.R | 15 +-
tests/testthat/test-get-methods.R | 22 ++
tests/testthat/test-how.R | 14 +
tests/testthat/test-nobs.R | 34 +++
tests/testthat/test-numPerms.R | 12 +
tests/testthat/test-permute-fun.R | 35 +++
tests/testthat/test-set-methods.R | 171 ++++++++++++
tests/testthat/test-shuffle-utils.R | 64 +++++
{inst/tests => tests/testthat}/test-shuffle.R | 14 +-
tests/testthat/test-shuffleSet.R | 85 ++++++
vignettes/Z.cls | 247 -----------------
vignettes/permutations.Rnw | 12 +-
65 files changed, 1736 insertions(+), 1986 deletions(-)
delete mode 100644 R/Blocks.R
create mode 100644 R/as.matrix.allPerms.R
create mode 100644 R/blocks.R
delete mode 100644 R/permCheck.R
delete mode 100644 R/permuplot.R
delete mode 100644 R/permute-deprecated.R
delete mode 100644 R/shuffle2.R
delete mode 100644 R/shuffleSet2.R
create mode 100644 README.md
create mode 100644 inst/NEWS
delete mode 100644 inst/NEWS.Rd
delete mode 100644 inst/tests/test-allPerms.R
delete mode 100644 inst/tests/test-shuffleSet.R
delete mode 100644 man/permCheck-deprecated.Rd
delete mode 100644 man/permControl-deprecated.Rd
delete mode 100644 man/permute-deprecated.Rd
rename tests/{test-all.R => testthat.R} (59%)
create mode 100644 tests/testthat/test-allPerms.R
create mode 100644 tests/testthat/test-as-methods.R
create mode 100644 tests/testthat/test-blocks.R
rename {inst/tests => tests/testthat}/test-check.R (61%)
create mode 100644 tests/testthat/test-get-methods.R
create mode 100644 tests/testthat/test-how.R
create mode 100644 tests/testthat/test-nobs.R
create mode 100644 tests/testthat/test-numPerms.R
create mode 100644 tests/testthat/test-permute-fun.R
create mode 100644 tests/testthat/test-set-methods.R
create mode 100644 tests/testthat/test-shuffle-utils.R
rename {inst/tests => tests/testthat}/test-shuffle.R (76%)
create mode 100644 tests/testthat/test-shuffleSet.R
delete mode 100644 vignettes/Z.cls
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