[med-svn] [permute] 02/07: Merge tag 'upstream/0.9-0'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository permute.

commit 633063418152c1b9d10676a2bf35f18e4f9097d0
Merge: 5e217cd 6808f9c
Author: Andreas Tille <tille at debian.org>
Date:   Mon Aug 8 09:15:48 2016 +0200

    Merge tag 'upstream/0.9-0'
    
    Upstream version 0.9-0

 DESCRIPTION                                   |  21 +-
 MD5                                           |  92 +++----
 NAMESPACE                                     |  37 +--
 R/Blocks.R                                    |   6 -
 R/allPerms.R                                  |  14 +-
 R/allStrata.R                                 |  10 +-
 R/as.matrix.allPerms.R                        |   6 +
 R/blocks.R                                    |  40 +++
 R/check.R                                     |  27 +-
 R/fixupCall.R                                 |  10 +-
 R/getFoo-methods.R                            | 129 +--------
 R/how.R                                       |   6 +-
 R/nobs-methods.R                              |   3 +
 R/numPerms.R                                  |  20 +-
 R/permCheck.R                                 |   5 -
 R/permuplot.R                                 | 198 --------------
 R/permute-deprecated.R                        |  43 ---
 R/permute.R                                   |  15 +-
 R/print.how.R                                 |   2 +-
 R/print.permutationMatrix.R                   |   5 +-
 R/setFoo-methods.R                            |  82 +-----
 R/shuffle-utils.R                             |   5 +-
 R/shuffle.R                                   | 146 ++++++----
 R/shuffle2.R                                  | 122 ---------
 R/shuffleSet.R                                | 216 +++++++++++----
 R/shuffleSet2.R                               | 205 --------------
 README.md                                     |  33 +++
 build/vignette.rds                            | Bin 230 -> 226 bytes
 data/jackal.rda                               | Bin 233 -> 233 bytes
 inst/ChangeLog                                |  58 +++-
 inst/NEWS                                     |  97 +++++++
 inst/NEWS.Rd                                  |  86 ------
 inst/doc/permutations.R                       |  10 +-
 inst/doc/permutations.Rnw                     |  12 +-
 inst/doc/permutations.pdf                     | Bin 315861 -> 312060 bytes
 inst/tests/test-allPerms.R                    | 127 ---------
 inst/tests/test-shuffleSet.R                  |  42 ---
 man/allPerms.Rd                               |  10 +
 man/check.Rd                                  | 112 ++++----
 man/how.Rd                                    |  10 +-
 man/permCheck-deprecated.Rd                   |  66 -----
 man/permControl-deprecated.Rd                 |  82 ------
 man/permute-deprecated.Rd                     |  25 --
 man/shuffleSet.Rd                             |  20 +-
 tests/Examples/permute-Ex.Rout.save           | 370 +++++++++++---------------
 tests/{test-all.R => testthat.R}              |   6 +-
 tests/testthat/test-allPerms.R                | 289 ++++++++++++++++++++
 tests/testthat/test-as-methods.R              |  18 ++
 tests/testthat/test-blocks.R                  |  11 +
 {inst/tests => tests/testthat}/test-check.R   |  15 +-
 tests/testthat/test-get-methods.R             |  22 ++
 tests/testthat/test-how.R                     |  14 +
 tests/testthat/test-nobs.R                    |  34 +++
 tests/testthat/test-numPerms.R                |  12 +
 tests/testthat/test-permute-fun.R             |  35 +++
 tests/testthat/test-set-methods.R             | 171 ++++++++++++
 tests/testthat/test-shuffle-utils.R           |  64 +++++
 {inst/tests => tests/testthat}/test-shuffle.R |  14 +-
 tests/testthat/test-shuffleSet.R              |  85 ++++++
 vignettes/Z.cls                               | 247 -----------------
 vignettes/permutations.Rnw                    |  12 +-
 61 files changed, 1711 insertions(+), 1963 deletions(-)

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