[med-svn] [cd-hit] 01/01: Autopkgtest added with error

[Canberk Koç]

This is an automated email from the git hooks/post-receive script.

cbk-guest pushed a commit to branch master
in repository cd-hit.

commit 91306cf3b408ee7de1c0c0cf939efd7db46cd25c
Author: cbk-guest <cbk-guests at scm.alioth.debian.org>
Date:   Thu Aug 11 08:10:39 2016 +0300

    Autopkgtest added with error
---
 debian/cd-hit.examples         |  1 +
 debian/changelog               |  8 +++++++-
 debian/tests.cd-hit/example.fa | 42 ++++++++++++++++++++++++++++++++++++++++++
 debian/tests/control           |  3 +++
 debian/tests/run-unit-test     | 23 +++++++++++++++++++++++
 5 files changed, 76 insertions(+), 1 deletion(-)

diff --git a/debian/cd-hit.examples b/debian/cd-hit.examples
new file mode 100644
index 0000000..71caadb
--- /dev/null
+++ b/debian/cd-hit.examples
@@ -0,0 +1 @@
+debian/tests.cd-hit/*
diff --git a/debian/changelog b/debian/changelog
index 5f10e9d..37ddd3b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,15 @@
 cd-hit (4.6.6-1) UNRELEASED; urgency=medium
 
+  * Team upload
+
+  [ Andreas Tille ]
   * New upstream version
   * Moved from SVN to Git
 
- -- Andreas Tille <tille at debian.org>  Wed, 03 Aug 2016 22:13:30 +0200
+  [ Canberk Koç ]
+  * Autopkgtest added
+
+ -- Canberk Koç <canberkkoc at gmail.com>  Thu, 11 Aug 2016 08:09:28 +0300
 
 cd-hit (4.6.5-2) unstable; urgency=medium
 
diff --git a/debian/tests.cd-hit/example.fa b/debian/tests.cd-hit/example.fa
new file mode 100644
index 0000000..ff8aa63
--- /dev/null
+++ b/debian/tests.cd-hit/example.fa
@@ -0,0 +1,42 @@
+>CALM_HUMAN
+MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD
+GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLT
+DEEVDEMIREADIDGDGQVNYEEFVQMMTAK
+>AF01595 Human telomerase reverse transcriptase (hTRT) mRNA
+MPRAPRCRAVRSLLRSHYREVLPLATFVRRLGPQGWRLVQRGDPAAFRALVAQCLVCVP
+WDARPPPAAPSFRQVSCLKELVARVLQRLCERGAKNVLAFGFALLDGARGGPPEAFTTS
+VRSYLPNTVTDALRGSGAWGLLLRRVGDDVLVHLLARCALFVLVAPSCAYQVCGPPLYQ
+LGAATQARPPPHASGPRRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPLPK
+RPRRGAAPEPERTPVGQGSWAHPGRTRGPSDRGFCVVSPARPAEEATSLEGALSGTRHS
+HPSVGRQHHAGPPSTSRPPRPWDTPCPPVYAETKHFLYSSGDKEQLRPSFLLSSLRPSL
+TGARRLVETIFLGSRPWMPGTPRRLPRLPQRYWQMRPLFLELLGNHAQCPYGVLLKTHC
+PLRAAVTPAAGVCAREKPQGSVAAPEEEDTDPRRLVQLLRQHSSPWQVYGFVRACLRRL
+VPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWKMSVRDCAWLRRSPGVGCVPA
+AEHRLREEILAKFLHWLMSVYVVELLRSFFYVTETTFQKNRLFFYRKSVWSKLQSIGIR
+QHLKRVQLRELSEAEVRQHREARPALLTSRLRFIPKPDGLRPIVNMDYVVGARTFRREK
+RAERLTSRVKALFSVLNYERARRPGLLGASVLGLDDIHRAWRTFVLRVRAQDPPPELYF
+VKVDVTGAYDTIPQDRLTEVIASIIKPQNTYCVRRYAVVQKAAHGHVRKAFKSHVSTLT
+DLQPYMRQFVAHLQETSPLRDAVVIEQSSSLNEASSGLFDVFLRFMCHHAVRIRGKSYV
+QCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLLVTPHLTHAKTFLR
+TLVRGVPEYGCVVNLRKTVVNFPVEDEALGGTAFVQMPAHGLFPWCGLLLDTRTLEVQS
+DYSSYARTSIRASLTFNRGFKAGRNMRRKLFGVLRLKCHSLFLDLQVNSLQTVCTNIYK
+ILLLQAYRFHACVLQLPFHQQVWKNPTFFLRVISDTASLCYSILKAKNAGMSLGAKGAA
+GPLPSEAVQWLCHQAFLLKLTRHRVTYVPLLGSLRTAQTQLSRKLPGTTLTALEAAANP
+ALPSDFKTILD
+>P53_HUMAN
+MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP
+DEAPRMPEAAPPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAK
+SVTCTYSPALNKMFCQLAKTCPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE
+RCSDSDGLAPPQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNS
+SCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGRDRRTEEENLRKKGEPHHELP
+PGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALELKDAQAGKEPG
+GSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD
+>TUBE_DROME
+MAYGWNGCGMGVQVNGSNGAIGLSSKYSRNTELRRVEDNDIYRLAKILDENSCWRKLMS
+IIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDEAANRLPPDQSKSQMMIDEWK
+TSGKLNERPTVGVLLQLLVQAELFSAADFVALDFLNESTPARPVDGPGALISLELLEEE
+MEVDNEGLSLKYQSSTATLGADAQGSVGLNLDNFEKDIVRRDKSVPQPSGNTPPIAPPR
+RQQRSTTNSNFATLTGTGTTSTTIPNVPNLTILNPSEQIQEPVLQPRPMNIPDLSILIS
+NSGDLRATVSDNPSNRTSSTDPPNIPRITLLIDNSGDVNSRPNHAPAKASTATTPTASS
+NNLPMISALNISKGSKETLRPESRSSSSSLSKDDDDDNDGEEDGEEEYPDAFLPNLSNS
+EQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSNDDYACNIPDLSELQQ
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..d2aa55a
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
new file mode 100644
index 0000000..3d51d40
--- /dev/null
+++ b/debian/tests/run-unit-test
@@ -0,0 +1,23 @@
+#!/bin/bash
+set -e
+
+pkg="cd-hit"
+
+if [ "$AUTOPKGTEST_TMP" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
+
+cd $AUTOPKGTEST_TMP
+find . -name "*.gz" -exec gunzip \{\} \;
+
+echo "==== CD_HIT-PARA ===="
+cd-hit-para -i example.fa -o db90 -c 0.9 -n 5 -M 16000 –d 0 -T 0
+echo "==== CD_HIT-2D-PARA ===="
+cd-hit-2d-para -i example.fa -i2 example.fa -o db2novel -c 0.9 -n 5 -d 0 -M 16000 -T 0
+echo "==== cd-hit-div ===="
+cd-hit-div -i example.fa -o output -div n
+
+echo "PASS"

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/cd-hit.git