[med-svn] [lambda-align] 04/15: Merge tag 'upstream/0.9.3+ds'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository lambda-align.

commit 42a254b7ce181e66be43450ef26c100b9e47265b
Merge: 95506bf 3f42e6b
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Sun Mar 13 14:09:44 2016 +0000

    Merge tag 'upstream/0.9.3+ds'
    
    Upstream version 0.9.3+ds

 include/seqan/.travis.yml                          |  30 +
 include/seqan/LICENSE                              |  27 +
 include/seqan/util/cmake/CMakeFindJavaCommon.cmake |  40 ++
 .../util/cmake/CMakeMacroParseArguments.cmake      | 138 ++++
 include/seqan/util/cmake/CTestConfig.cmake         |  13 +
 include/seqan/util/cmake/FeatureSummary.cmake      | 117 ++++
 include/seqan/util/cmake/FindBZip2.cmake           |  61 ++
 include/seqan/util/cmake/FindCXX11.cmake           |  39 ++
 include/seqan/util/cmake/FindCXX14.cmake           |  29 +
 include/seqan/util/cmake/FindGitInfo.cmake         |  64 ++
 include/seqan/util/cmake/FindJava.cmake            | 228 +++++++
 include/seqan/util/cmake/FindOpenCL.cmake          |  79 +++
 include/seqan/util/cmake/FindOpenMP.cmake          | 137 ++++
 .../util/cmake/FindPackageHandleStandardArgs.cmake | 261 ++++++++
 include/seqan/util/cmake/FindSeqAn.cmake           | 480 ++++++++++++++
 include/seqan/util/cmake/FindSphinx.cmake          | 145 ++++
 include/seqan/util/cmake/FindTBB/FindTBB.cmake     | 208 ++++++
 include/seqan/util/cmake/FindTBB/README            |   6 +
 include/seqan/util/cmake/FindZLIB.cmake            | 107 +++
 include/seqan/util/cmake/GetCurrentDate.cmake      |  57 ++
 include/seqan/util/cmake/GetCurrentDate.cpp        |  52 ++
 include/seqan/util/cmake/LibFindMacros.cmake       |  99 +++
 include/seqan/util/cmake/README                    |  84 +++
 include/seqan/util/cmake/SeqAnBuildSystem.cmake    | 731 +++++++++++++++++++++
 include/seqan/util/cmake/SeqAnContribs.cmake       | 117 ++++
 include/seqan/util/cmake/SeqAnCtdSetup.cmake       | 242 +++++++
 .../seqan/util/cmake/SeqAnUsabilityAnalyzer.cmake  |  98 +++
 include/seqan/util/cmake/SeqAnVersion.cpp          |  48 ++
 include/seqan/util/cmake/SetCPackSystemName.cmake  |  51 ++
 include/seqan/util/cmake/ctd/COPYRIGHT             |   2 +
 include/seqan/util/cmake/ctd/DESCRIPTION           |   7 +
 include/seqan/util/cmake/ctd/LICENSE               |  31 +
 .../cmake/ctd/configure_profile_properties.cmake   |  13 +
 include/seqan/util/cmake/ctd/icons/app.png         | Bin 0 -> 3931 bytes
 include/seqan/util/cmake/ctd/icons/category.png    | Bin 0 -> 2978 bytes
 include/seqan/util/cmake/ctd/icons/splash.png      | Bin 0 -> 9838 bytes
 include/seqan/util/cmake/ctd/mime.types            |  37 ++
 include/seqan/util/cmake/ctd/mimetypes.xml         |  23 +
 include/seqan/util/cmake/ctd/plugin.properties.in  |  15 +
 include/seqan/util/cmake/package.cmake             |  96 +++
 include/seqan/util/colornvcc                       | 259 ++++++++
 include/seqan/util/ctd2galaxy.py                   | 192 ++++++
 include/seqan/util/linux_binary_tests.sh           | 171 +++++
 include/seqan/util/makefile_project/Makefile       |  15 +
 include/seqan/util/makefile_project/Makefile.rules |  17 +
 include/seqan/util/makefile_project/README         |   1 +
 include/seqan/util/makefile_project/debug/Makefile |   3 +
 .../seqan/util/makefile_project/release/Makefile   |   3 +
 include/seqan/util/makefile_project/src/main.cpp   |  11 +
 .../seqan/util/raw_cmake_project/CMakeLists.txt    |  11 +
 include/seqan/util/raw_cmake_project/README        |   2 +
 .../util/raw_cmake_project/src/CMakeLists.txt      |  12 +
 include/seqan/util/raw_cmake_project/src/main.cpp  |  12 +
 53 files changed, 4721 insertions(+)

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