[med-svn] [ariba] branch upstream updated (551da84 -> a05dfde)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch upstream
in repository ariba.

      from  551da84   Imported Upstream version 2.2.3+ds
       new  a05dfde   Imported Upstream version 2.2.4+ds

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ariba/reference_data.py                            |  2 +-
 ariba/report.py                                    | 48 +++++++++++++++-------
 ariba/report_filter.py                             |  4 +-
 ariba/summary_cluster_variant.py                   | 10 ++++-
 ariba/tests/cluster_test.py                        | 25 +++++++++--
 ...uster_full_run_smtls_known_snp_presabs_nonc.fa} |  0
 ...ster_full_run_smtls_known_snp_presabs_nonc.tsv} |  1 +
 .../reads_1.fq                                     |  0
 .../reads_2.fq                                     |  0
 .../references.fa                                  |  0
 ariba/tests/reference_data_test.py                 |  4 +-
 ariba/tests/report_filter_test.py                  |  3 +-
 ariba/tests/summary_cluster_variant_test.py        |  5 ++-
 setup.py                                           |  4 +-
 14 files changed, 77 insertions(+), 29 deletions(-)
 copy ariba/tests/data/{cluster_full_run_known_smtls_snp_presabs_nonc.fa => cluster_full_run_smtls_known_snp_presabs_nonc.fa} (100%)
 copy ariba/tests/data/{cluster_full_run_smtls_snp_presabs_nonc.tsv => cluster_full_run_smtls_known_snp_presabs_nonc.tsv} (54%)
 copy ariba/tests/data/{cluster_full_run_known_smtls_snp_presabs_gene => cluster_full_run_smtls_known_snp_presabs_nonc}/reads_1.fq (100%)
 copy ariba/tests/data/{cluster_full_run_known_smtls_snp_presabs_gene => cluster_full_run_smtls_known_snp_presabs_nonc}/reads_2.fq (100%)
 copy ariba/tests/data/{cluster_full_run_known_smtls_snp_presabs_nonc => cluster_full_run_smtls_known_snp_presabs_nonc}/references.fa (100%)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ariba.git