[med-svn] r22723 - in trunk/packages/biosquid/tags: . 1.9g+cvs20050121-6/debian 1.9g+cvs20050121-6/debian/patches
Sascha Steinbiss
satta at moszumanska.debian.org
Thu Aug 25 22:20:54 UTC 2016
Author: satta
Date: 2016-08-25 22:20:53 +0000 (Thu, 25 Aug 2016)
New Revision: 22723
Added:
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/reproducible.patch
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules
Removed:
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series
trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules
Log:
[svn-buildpackage] Tagging biosquid 1.9g+cvs20050121-6
Deleted: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog
===================================================================
--- trunk/packages/biosquid/trunk/debian/changelog 2016-08-18 20:13:55 UTC (rev 22696)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog 2016-08-25 22:20:53 UTC (rev 22723)
@@ -1,60 +0,0 @@
-biosquid (1.9g+cvs20050121-5) unstable; urgency=medium
-
- * Team upload.
- * d/tests/control: add build-essential dependency (thanks to Martin Pitt)
- Closes: #815883
- * Bump Standards-Version.
- * Fix outdated URL in watchfile.
- * Add homepage.
- * Use secure VCS URL.
-
- -- Sascha Steinbiss <sascha at steinbiss.name> Thu, 25 Feb 2016 22:48:31 +0000
-
-biosquid (1.9g+cvs20050121-4) unstable; urgency=medium
-
- * Fix segmentation fault with ambiguous arguments (thanks for the patch
- to artin Steghöfer <martin at steghoefer.eu>)
- Closes: #716353
- * cme fix dpkg-control
- * Add autopkgtest
- * Very basic DEP3 headers
- * Documentation how the package can be tested
- * Fix DEP5 name of license
-
- -- Andreas Tille <tille at debian.org> Thu, 09 Oct 2014 15:35:25 +0200
-
-biosquid (1.9g+cvs20050121-3) unstable; urgency=low
-
- * debian/control:
- - added myself to uploaders
- - cme fix dpkg-control
- - debhelper 9
- - Homepage field droped since homepage vanished
- - canonical Vcs fields
- - enhanced long description
- * debian/source/format: 3.0 (quilt)
- * debian/rules: use dh instead of cdbs
- * debian/copyright: DEP5
-
- -- Andreas Tille <tille at debian.org> Mon, 28 Oct 2013 14:04:02 +0100
-
-biosquid (1.9g+cvs20050121-2) unstable; urgency=low
-
- [ Andreas Tille ]
- * Use Homepage tag control field instead of putting it into
- long description (Closes: #466005).
-
- [ Nelson A. de Oliveira ]
- * Update watch file (Closes: #453579);
- * Updated Standards-Version;
- * Changed Maintainer to the Debian-Med Packaging Team;
- * Added Vcs-* fields.
-
- -- Nelson A. de Oliveira <naoliv at debian.org> Thu, 21 Feb 2008 22:41:01 -0300
-
-biosquid (1.9g+cvs20050121-1) unstable; urgency=low
-
- * Initial release (Closes: #319945).
-
- -- Nelson A. de Oliveira <naoliv at gmail.com> Sat, 5 Aug 2006 01:03:52 -0300
-
Copied: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog (from rev 22722, trunk/packages/biosquid/trunk/debian/changelog)
===================================================================
--- trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog (rev 0)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/changelog 2016-08-25 22:20:53 UTC (rev 22723)
@@ -0,0 +1,69 @@
+biosquid (1.9g+cvs20050121-6) unstable; urgency=medium
+
+ * Team upload.
+ * Make build reproducible.
+ * Enable full hardening.
+ * Bump Standards-Version.
+
+ -- Sascha Steinbiss <satta at debian.org> Thu, 25 Aug 2016 20:36:25 +0000
+
+biosquid (1.9g+cvs20050121-5) unstable; urgency=medium
+
+ * Team upload.
+ * d/tests/control: add build-essential dependency (thanks to Martin Pitt)
+ Closes: #815883
+ * Bump Standards-Version.
+ * Fix outdated URL in watchfile.
+ * Add homepage.
+ * Use secure VCS URL.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name> Thu, 25 Feb 2016 22:48:31 +0000
+
+biosquid (1.9g+cvs20050121-4) unstable; urgency=medium
+
+ * Fix segmentation fault with ambiguous arguments (thanks for the patch
+ to artin Steghöfer <martin at steghoefer.eu>)
+ Closes: #716353
+ * cme fix dpkg-control
+ * Add autopkgtest
+ * Very basic DEP3 headers
+ * Documentation how the package can be tested
+ * Fix DEP5 name of license
+
+ -- Andreas Tille <tille at debian.org> Thu, 09 Oct 2014 15:35:25 +0200
+
+biosquid (1.9g+cvs20050121-3) unstable; urgency=low
+
+ * debian/control:
+ - added myself to uploaders
+ - cme fix dpkg-control
+ - debhelper 9
+ - Homepage field droped since homepage vanished
+ - canonical Vcs fields
+ - enhanced long description
+ * debian/source/format: 3.0 (quilt)
+ * debian/rules: use dh instead of cdbs
+ * debian/copyright: DEP5
+
+ -- Andreas Tille <tille at debian.org> Mon, 28 Oct 2013 14:04:02 +0100
+
+biosquid (1.9g+cvs20050121-2) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * Use Homepage tag control field instead of putting it into
+ long description (Closes: #466005).
+
+ [ Nelson A. de Oliveira ]
+ * Update watch file (Closes: #453579);
+ * Updated Standards-Version;
+ * Changed Maintainer to the Debian-Med Packaging Team;
+ * Added Vcs-* fields.
+
+ -- Nelson A. de Oliveira <naoliv at debian.org> Thu, 21 Feb 2008 22:41:01 -0300
+
+biosquid (1.9g+cvs20050121-1) unstable; urgency=low
+
+ * Initial release (Closes: #319945).
+
+ -- Nelson A. de Oliveira <naoliv at gmail.com> Sat, 5 Aug 2006 01:03:52 -0300
+
Deleted: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control
===================================================================
--- trunk/packages/biosquid/trunk/debian/control 2016-08-18 20:13:55 UTC (rev 22696)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control 2016-08-25 22:20:53 UTC (rev 22723)
@@ -1,45 +0,0 @@
-Source: biosquid
-Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Nelson A. de Oliveira <naoliv at debian.org>,
- Andreas Tille <tille at debian.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 9),
- autoconf,
- autotools-dev
-Standards-Version: 3.9.7
-Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/biosquid/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biosquid/trunk/
-Homepage: http://eddylab.org/software.html
-
-Package: biosquid
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Recommends: hmmer
-Description: utilities for biological sequence analysis
- SQUID is a library of C code functions for sequence analysis. It also
- includes a number of small utility programs to convert, show statistics,
- manipulate and do other functions on sequence files.
- .
- The original name of the package is "squid", but since there is already
- a squid on the archive (a proxy cache), it was renamed to "biosquid".
- .
- This package contains some tools to demonstrate the features of the
- SQUID library.
-
-Package: biosquid-dev
-Architecture: any
-Section: devel
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Suggests: biosquid
-Description: headers and static library for biological sequence analysis
- SQUID is a library of C code functions for sequence analysis. It also
- includes a number of small utility programs to convert, show statistics,
- manipulate and do other functions on sequence files.
- .
- The original name of the package is "squid", but since there is already
- a squid on the archive (a proxy cache), it was renamed to "biosquid".
- .
- This package contains the header files and the static SQUID library.
Copied: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control (from rev 22722, trunk/packages/biosquid/trunk/debian/control)
===================================================================
--- trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control (rev 0)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/control 2016-08-25 22:20:53 UTC (rev 22723)
@@ -0,0 +1,45 @@
+Source: biosquid
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Nelson A. de Oliveira <naoliv at debian.org>,
+ Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ autoconf,
+ autotools-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/biosquid/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/biosquid/trunk/
+Homepage: http://eddylab.org/software.html
+
+Package: biosquid
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Recommends: hmmer
+Description: utilities for biological sequence analysis
+ SQUID is a library of C code functions for sequence analysis. It also
+ includes a number of small utility programs to convert, show statistics,
+ manipulate and do other functions on sequence files.
+ .
+ The original name of the package is "squid", but since there is already
+ a squid on the archive (a proxy cache), it was renamed to "biosquid".
+ .
+ This package contains some tools to demonstrate the features of the
+ SQUID library.
+
+Package: biosquid-dev
+Architecture: any
+Section: devel
+Depends: ${shlibs:Depends},
+ ${misc:Depends}
+Suggests: biosquid
+Description: headers and static library for biological sequence analysis
+ SQUID is a library of C code functions for sequence analysis. It also
+ includes a number of small utility programs to convert, show statistics,
+ manipulate and do other functions on sequence files.
+ .
+ The original name of the package is "squid", but since there is already
+ a squid on the archive (a proxy cache), it was renamed to "biosquid".
+ .
+ This package contains the header files and the static SQUID library.
Copied: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/reproducible.patch (from rev 22721, trunk/packages/biosquid/trunk/debian/patches/reproducible.patch)
===================================================================
--- trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/reproducible.patch (rev 0)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/reproducible.patch 2016-08-25 22:20:53 UTC (rev 22723)
@@ -0,0 +1,14 @@
+Description: make build reproducible
+ This patch removes the CFLAGS from the testsuite Makefile.in, which contain
+ the build directory.
+Author: Sascha Steinbiss <satta at debian.org>
+--- a/Testsuite/Makefile.in
++++ b/Testsuite/Makefile.in
+@@ -13,7 +13,6 @@
+
+ SHELL = /bin/sh
+ CC = @CC@
+-CFLAGS = @CFLAGS@
+ DEFS = @DEFS@
+ LIBS = -lsquid @LIBS@ -lm
+
Deleted: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series
===================================================================
--- trunk/packages/biosquid/trunk/debian/patches/series 2016-08-18 20:13:55 UTC (rev 22696)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series 2016-08-25 22:20:53 UTC (rev 22723)
@@ -1,10 +0,0 @@
-afetch.man.patch
-alistat.man.patch
-compstruct.man.patch
-Makefile.in.patch
-seqstat.man.patch
-sfetch.man.patch
-shuffle.man.patch
-sindex.man.patch
-sreformat.man.patch
-getopt-segmentation-fault.patch
Copied: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series (from rev 22721, trunk/packages/biosquid/trunk/debian/patches/series)
===================================================================
--- trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series (rev 0)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/patches/series 2016-08-25 22:20:53 UTC (rev 22723)
@@ -0,0 +1,11 @@
+afetch.man.patch
+alistat.man.patch
+compstruct.man.patch
+Makefile.in.patch
+seqstat.man.patch
+sfetch.man.patch
+shuffle.man.patch
+sindex.man.patch
+sreformat.man.patch
+getopt-segmentation-fault.patch
+reproducible.patch
Deleted: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules
===================================================================
--- trunk/packages/biosquid/trunk/debian/rules 2016-08-18 20:13:55 UTC (rev 22696)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules 2016-08-25 22:20:53 UTC (rev 22723)
@@ -1,32 +0,0 @@
-#!/usr/bin/make -f
-
-# Uncomment this to turn on verbose mode.
-export DH_VERBOSE=1
-
-%:
- dh $@ --with autotools_dev
-
-override_dh_auto_clean:
- dh_auto_clean
- rm -f configure
-
-override_dh_auto_configure:
- # autoreconf && true
- autoconf
- dh_auto_configure -- --enable-lfs
-
-override_dh_auto_install:
- dh_auto_install -- prefix=$(CURDIR)/debian/tmp/usr
-
-override_dh_install:
- mv $(CURDIR)/debian/tmp/usr/bin/translate $(CURDIR)/debian/tmp/usr/bin/stranslate
- dh_install
-
-override_dh_installexamples:
- dh_installexamples
- cd $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean
- sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Formats/*.pl
-
-override_dh_auto_test:
- chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch*
- dh_auto_test
Copied: trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules (from rev 22722, trunk/packages/biosquid/trunk/debian/rules)
===================================================================
--- trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules (rev 0)
+++ trunk/packages/biosquid/tags/1.9g+cvs20050121-6/debian/rules 2016-08-25 22:20:53 UTC (rev 22723)
@@ -0,0 +1,34 @@
+#!/usr/bin/make -f
+
+export DEB_BUILD_MAINT_OPTIONS = hardening=+all
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=1
+
+%:
+ dh $@ --with autotools_dev
+
+override_dh_auto_clean:
+ dh_auto_clean
+ rm -f configure
+
+override_dh_auto_configure:
+ # autoreconf && true
+ autoconf
+ dh_auto_configure -- --enable-lfs
+
+override_dh_auto_install:
+ dh_auto_install -- prefix=$(CURDIR)/debian/tmp/usr
+
+override_dh_install:
+ mv $(CURDIR)/debian/tmp/usr/bin/translate $(CURDIR)/debian/tmp/usr/bin/stranslate
+ dh_install
+
+override_dh_installexamples:
+ dh_installexamples
+ cd $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean
+ sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(CURDIR)/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Formats/*.pl
+
+override_dh_auto_test:
+ chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch*
+ dh_auto_test
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