[med-svn] [bioperl] 01/01: New upstream version 1.7.1
Andreas Tille
tille at debian.org
Mon Dec 5 21:21:22 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to annotated tag upstream/1.7.1
in repository bioperl.
commit 5a744a0af2b39258c501978c22b16cfbcd033c9f
Author: Andreas Tille <tille at debian.org>
Date: Mon Dec 5 22:02:27 2016 +0100
New upstream version 1.7.1
---
Bio/DB/SeqFeature/Store/LoadHelper.pm | 2 +-
Bio/Root/Build.pm | 29 +
Bio/Root/Version.pm | 2 +-
Bio/Tools/GFF.pm | 21 +-
Changes | 9 +
META.json | 2408 ++++++++++++++++++++++-----------
META.yml | 810 ++++++++++-
t/RemoteDB/GenBank.t | 3 +-
8 files changed, 2463 insertions(+), 821 deletions(-)
diff --git a/Bio/DB/SeqFeature/Store/LoadHelper.pm b/Bio/DB/SeqFeature/Store/LoadHelper.pm
index 2a50bdd..6a9491f 100644
--- a/Bio/DB/SeqFeature/Store/LoadHelper.pm
+++ b/Bio/DB/SeqFeature/Store/LoadHelper.pm
@@ -40,7 +40,7 @@ use File::Temp 'tempdir';
use File::Spec;
use Fcntl qw(O_CREAT O_RDWR);
-our $VERSION = '1.11';
+our $VERSION = '1.12';
my %DBHandles;
diff --git a/Bio/Root/Build.pm b/Bio/Root/Build.pm
index 1253f4a..36dbd47 100644
--- a/Bio/Root/Build.pm
+++ b/Bio/Root/Build.pm
@@ -329,6 +329,35 @@ sub ACTION_realclean {
}
}
+=head2 get_metadata
+
+This wraps the base metafile method to add in version information from
+Bio::Root::Version to META.json and META.yml if it isn't already present. Note
+this should be compliant with meta_add and meta_merge, but occurs after those
+steps. If a version is already set and dist_version differs from the set one, a
+warning is printed.
+
+=cut
+
+sub get_metadata {
+ my ($self, %args) = @_;
+ my $metadata = $self->SUPER::get_metadata(%args);
+
+ if (exists $metadata->{provides}) {
+ my $ver = $self->dist_version;
+ my $pkgs = $metadata->{provides};
+ for my $p (keys %{$pkgs}) {
+ if (!exists($pkgs->{$p}->{'version'})) {
+ $pkgs->{$p}->{'version'} = $ver;
+ } else {
+ $self->log_warn("Note: Module $p has a set version: ".$pkgs->{$p}->{'version'}."\n")
+ if $pkgs->{$p}->{'version'} ne $ver;
+ }
+ }
+ }
+ return $metadata;
+}
+
=head2 make_zip
Makes zip file for windows users and bzip2 files as well
diff --git a/Bio/Root/Version.pm b/Bio/Root/Version.pm
index 1c17082..e7bd376 100644
--- a/Bio/Root/Version.pm
+++ b/Bio/Root/Version.pm
@@ -36,7 +36,7 @@ variable set if it's not already.
=cut
-our $VERSION = '1.007000';
+our $VERSION = '1.007001';
sub import {
# try to handle multiple levels of inheritance:
diff --git a/Bio/Tools/GFF.pm b/Bio/Tools/GFF.pm
index e992916..8067bac 100644
--- a/Bio/Tools/GFF.pm
+++ b/Bio/Tools/GFF.pm
@@ -643,7 +643,6 @@ sub _from_gff3_string {
# taken from Bio::DB::GFF
sub unescape {
my $v = shift;
- $v =~ tr/+/ /;
$v =~ s/%([0-9a-fA-F]{2})/chr hex($1)/ge;
return $v;
}
@@ -1031,14 +1030,18 @@ sub _gff3_string {
for my $tag ( @all_tags ) {
next if exists $SKIPPED_TAGS{$tag};
# next if $tag eq 'Target';
- if ($tag eq 'Target' && ! $origfeat->isa('Bio::SeqFeature::FeaturePair')){
- # simple Target,start,stop
- my($target_id, $b,$e,$strand) = $feat->get_tag_values($tag);
- next unless(defined($e) && defined($b) && $target_id);
- ($b,$e)= ($e,$b) if(defined $strand && $strand<0);
- $target_id =~ s/([\t\n\r%&\=;,])/sprintf("%%%X",ord($1))/ge;
- push @groups, sprintf("Target=%s %d %d", $target_id,$b,$e);
- next;
+ if ($tag eq 'Target' && ! $origfeat->isa('Bio::SeqFeature::FeaturePair')){
+ my @values = $feat->get_tag_values($tag);
+ if(scalar(@values) > 1){ # How is it possible that Target is has a value list ??
+ # simple Target,start,stop
+ my ($target_id, $b,$e,$strand) = $feat->get_tag_values($tag);
+ next unless(defined($e) && defined($b) && $target_id);
+ ($b,$e)= ($e,$b) if(defined $strand && $strand<0);
+ #if we have the strand we will print it
+ if($strand){ push @groups, sprintf("Target=%s %d %d %s", $target_id,$b,$e,$strand); }
+ else{ push @groups, sprintf("Target=%s %d %d", $target_id,$b,$e); }
+ next;
+ }
}
my $valuestr;
diff --git a/Changes b/Changes
index 81b2e78..5a6aa44 100644
--- a/Changes
+++ b/Changes
@@ -31,6 +31,15 @@ them separately on CPAN. Modules considered obsolute (relies on a dead web
service or utilizes strict dependencies that are also considered obsolete) will
be removed.
+1.7.1 - "Election"
+
+ [Bugs]
+
+ * Minor release to incorporate fix for CPAN indexing, which
+ prevented proper updates [cjfields]
+ * Fix problem in managing Target attribute for gff3 [Jukes34]
+ * Minor bug fixes related to NCBI HTTPS support [cjfields]
+
1.7.0 - "Disney"
[New site]
diff --git a/META.json b/META.json
index aef7f69..4baa04f 100644
--- a/META.json
+++ b/META.json
@@ -80,2416 +80,3216 @@
},
"provides" : {
"Bio::Align::AlignI" : {
- "file" : "Bio/Align/AlignI.pm"
+ "file" : "Bio/Align/AlignI.pm",
+ "version" : "1.007001"
},
"Bio::Align::DNAStatistics" : {
- "file" : "Bio/Align/DNAStatistics.pm"
+ "file" : "Bio/Align/DNAStatistics.pm",
+ "version" : "1.007001"
},
"Bio::Align::Graphics" : {
- "file" : "Bio/Align/Graphics.pm"
+ "file" : "Bio/Align/Graphics.pm",
+ "version" : "1.007001"
},
"Bio::Align::PairwiseStatistics" : {
- "file" : "Bio/Align/PairwiseStatistics.pm"
+ "file" : "Bio/Align/PairwiseStatistics.pm",
+ "version" : "1.007001"
},
"Bio::Align::ProteinStatistics" : {
- "file" : "Bio/Align/ProteinStatistics.pm"
+ "file" : "Bio/Align/ProteinStatistics.pm",
+ "version" : "1.007001"
},
"Bio::Align::StatisticsI" : {
- "file" : "Bio/Align/StatisticsI.pm"
+ "file" : "Bio/Align/StatisticsI.pm",
+ "version" : "1.007001"
},
"Bio::Align::Utilities" : {
- "file" : "Bio/Align/Utilities.pm"
+ "file" : "Bio/Align/Utilities.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO" : {
- "file" : "Bio/AlignIO.pm"
+ "file" : "Bio/AlignIO.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::Handler::GenericAlignHandler" : {
- "file" : "Bio/AlignIO/Handler/GenericAlignHandler.pm"
+ "file" : "Bio/AlignIO/Handler/GenericAlignHandler.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::arp" : {
- "file" : "Bio/AlignIO/arp.pm"
+ "file" : "Bio/AlignIO/arp.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::bl2seq" : {
- "file" : "Bio/AlignIO/bl2seq.pm"
+ "file" : "Bio/AlignIO/bl2seq.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::clustalw" : {
- "file" : "Bio/AlignIO/clustalw.pm"
+ "file" : "Bio/AlignIO/clustalw.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::emboss" : {
- "file" : "Bio/AlignIO/emboss.pm"
+ "file" : "Bio/AlignIO/emboss.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::fasta" : {
- "file" : "Bio/AlignIO/fasta.pm"
+ "file" : "Bio/AlignIO/fasta.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::largemultifasta" : {
- "file" : "Bio/AlignIO/largemultifasta.pm"
+ "file" : "Bio/AlignIO/largemultifasta.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::maf" : {
- "file" : "Bio/AlignIO/maf.pm"
+ "file" : "Bio/AlignIO/maf.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::mase" : {
- "file" : "Bio/AlignIO/mase.pm"
+ "file" : "Bio/AlignIO/mase.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::mega" : {
- "file" : "Bio/AlignIO/mega.pm"
+ "file" : "Bio/AlignIO/mega.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::meme" : {
- "file" : "Bio/AlignIO/meme.pm"
+ "file" : "Bio/AlignIO/meme.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::metafasta" : {
- "file" : "Bio/AlignIO/metafasta.pm"
+ "file" : "Bio/AlignIO/metafasta.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::msf" : {
- "file" : "Bio/AlignIO/msf.pm"
+ "file" : "Bio/AlignIO/msf.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::nexml" : {
- "file" : "Bio/AlignIO/nexml.pm"
+ "file" : "Bio/AlignIO/nexml.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::nexus" : {
- "file" : "Bio/AlignIO/nexus.pm"
+ "file" : "Bio/AlignIO/nexus.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::pfam" : {
- "file" : "Bio/AlignIO/pfam.pm"
+ "file" : "Bio/AlignIO/pfam.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::phylip" : {
- "file" : "Bio/AlignIO/phylip.pm"
+ "file" : "Bio/AlignIO/phylip.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::po" : {
- "file" : "Bio/AlignIO/po.pm"
+ "file" : "Bio/AlignIO/po.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::proda" : {
- "file" : "Bio/AlignIO/proda.pm"
+ "file" : "Bio/AlignIO/proda.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::prodom" : {
- "file" : "Bio/AlignIO/prodom.pm"
+ "file" : "Bio/AlignIO/prodom.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::psi" : {
- "file" : "Bio/AlignIO/psi.pm"
+ "file" : "Bio/AlignIO/psi.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::selex" : {
- "file" : "Bio/AlignIO/selex.pm"
+ "file" : "Bio/AlignIO/selex.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::stockholm" : {
- "file" : "Bio/AlignIO/stockholm.pm"
+ "file" : "Bio/AlignIO/stockholm.pm",
+ "version" : "1.007001"
},
"Bio::AlignIO::xmfa" : {
- "file" : "Bio/AlignIO/xmfa.pm"
+ "file" : "Bio/AlignIO/xmfa.pm",
+ "version" : "1.007001"
},
"Bio::AnalysisI" : {
- "file" : "Bio/AnalysisI.pm"
+ "file" : "Bio/AnalysisI.pm",
+ "version" : "1.007001"
},
"Bio::AnalysisI::JobI" : {
- "file" : "Bio/AnalysisI.pm"
+ "file" : "Bio/AnalysisI.pm",
+ "version" : "1.007001"
},
"Bio::AnalysisParserI" : {
- "file" : "Bio/AnalysisParserI.pm"
+ "file" : "Bio/AnalysisParserI.pm",
+ "version" : "1.007001"
},
"Bio::AnalysisResultI" : {
- "file" : "Bio/AnalysisResultI.pm"
+ "file" : "Bio/AnalysisResultI.pm",
+ "version" : "1.007001"
},
"Bio::AnnotatableI" : {
- "file" : "Bio/AnnotatableI.pm"
+ "file" : "Bio/AnnotatableI.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::AnnotationFactory" : {
- "file" : "Bio/Annotation/AnnotationFactory.pm"
+ "file" : "Bio/Annotation/AnnotationFactory.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Collection" : {
- "file" : "Bio/Annotation/Collection.pm"
+ "file" : "Bio/Annotation/Collection.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Comment" : {
- "file" : "Bio/Annotation/Comment.pm"
+ "file" : "Bio/Annotation/Comment.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::DBLink" : {
- "file" : "Bio/Annotation/DBLink.pm"
+ "file" : "Bio/Annotation/DBLink.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::OntologyTerm" : {
- "file" : "Bio/Annotation/OntologyTerm.pm"
+ "file" : "Bio/Annotation/OntologyTerm.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Reference" : {
- "file" : "Bio/Annotation/Reference.pm"
+ "file" : "Bio/Annotation/Reference.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Relation" : {
- "file" : "Bio/Annotation/Relation.pm"
+ "file" : "Bio/Annotation/Relation.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::SimpleValue" : {
- "file" : "Bio/Annotation/SimpleValue.pm"
+ "file" : "Bio/Annotation/SimpleValue.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::StructuredValue" : {
- "file" : "Bio/Annotation/StructuredValue.pm"
+ "file" : "Bio/Annotation/StructuredValue.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::TagTree" : {
- "file" : "Bio/Annotation/TagTree.pm"
+ "file" : "Bio/Annotation/TagTree.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Target" : {
- "file" : "Bio/Annotation/Target.pm"
+ "file" : "Bio/Annotation/Target.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::Tree" : {
- "file" : "Bio/Annotation/Tree.pm"
+ "file" : "Bio/Annotation/Tree.pm",
+ "version" : "1.007001"
},
"Bio::Annotation::TypeManager" : {
- "file" : "Bio/Annotation/TypeManager.pm"
+ "file" : "Bio/Annotation/TypeManager.pm",
+ "version" : "1.007001"
},
"Bio::AnnotationCollectionI" : {
- "file" : "Bio/AnnotationCollectionI.pm"
+ "file" : "Bio/AnnotationCollectionI.pm",
+ "version" : "1.007001"
},
"Bio::AnnotationI" : {
- "file" : "Bio/AnnotationI.pm"
+ "file" : "Bio/AnnotationI.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::Contig" : {
- "file" : "Bio/Assembly/Contig.pm"
+ "file" : "Bio/Assembly/Contig.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::ContigAnalysis" : {
- "file" : "Bio/Assembly/ContigAnalysis.pm"
+ "file" : "Bio/Assembly/ContigAnalysis.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO" : {
- "file" : "Bio/Assembly/IO.pm"
+ "file" : "Bio/Assembly/IO.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::ace" : {
- "file" : "Bio/Assembly/IO/ace.pm"
+ "file" : "Bio/Assembly/IO/ace.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::bowtie" : {
- "file" : "Bio/Assembly/IO/bowtie.pm"
+ "file" : "Bio/Assembly/IO/bowtie.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::maq" : {
- "file" : "Bio/Assembly/IO/maq.pm"
+ "file" : "Bio/Assembly/IO/maq.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::phrap" : {
- "file" : "Bio/Assembly/IO/phrap.pm"
+ "file" : "Bio/Assembly/IO/phrap.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::sam" : {
- "file" : "Bio/Assembly/IO/sam.pm"
+ "file" : "Bio/Assembly/IO/sam.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::IO::tigr" : {
- "file" : "Bio/Assembly/IO/tigr.pm"
+ "file" : "Bio/Assembly/IO/tigr.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::Scaffold" : {
- "file" : "Bio/Assembly/Scaffold.pm"
+ "file" : "Bio/Assembly/Scaffold.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::ScaffoldI" : {
- "file" : "Bio/Assembly/ScaffoldI.pm"
+ "file" : "Bio/Assembly/ScaffoldI.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::Singlet" : {
- "file" : "Bio/Assembly/Singlet.pm"
+ "file" : "Bio/Assembly/Singlet.pm",
+ "version" : "1.007001"
},
"Bio::Assembly::Tools::ContigSpectrum" : {
- "file" : "Bio/Assembly/Tools/ContigSpectrum.pm"
+ "file" : "Bio/Assembly/Tools/ContigSpectrum.pm",
+ "version" : "1.007001"
},
"Bio::Cluster::ClusterFactory" : {
- "file" : "Bio/Cluster/ClusterFactory.pm"
+ "file" : "Bio/Cluster/ClusterFactory.pm",
+ "version" : "1.007001"
},
"Bio::Cluster::FamilyI" : {
- "file" : "Bio/Cluster/FamilyI.pm"
+ "file" : "Bio/Cluster/FamilyI.pm",
+ "version" : "1.007001"
},
"Bio::Cluster::SequenceFamily" : {
- "file" : "Bio/Cluster/SequenceFamily.pm"
+ "file" : "Bio/Cluster/SequenceFamily.pm",
+ "version" : "1.007001"
},
"Bio::Cluster::UniGene" : {
- "file" : "Bio/Cluster/UniGene.pm"
+ "file" : "Bio/Cluster/UniGene.pm",
+ "version" : "1.007001"
},
"Bio::Cluster::UniGeneI" : {
- "file" : "Bio/Cluster/UniGeneI.pm"
+ "file" : "Bio/Cluster/UniGeneI.pm",
+ "version" : "1.007001"
},
"Bio::ClusterI" : {
- "file" : "Bio/ClusterI.pm"
+ "file" : "Bio/ClusterI.pm",
+ "version" : "1.007001"
},
"Bio::ClusterIO" : {
- "file" : "Bio/ClusterIO.pm"
+ "file" : "Bio/ClusterIO.pm",
+ "version" : "1.007001"
},
"Bio::ClusterIO::dbsnp" : {
- "file" : "Bio/ClusterIO/dbsnp.pm"
+ "file" : "Bio/ClusterIO/dbsnp.pm",
+ "version" : "1.007001"
},
"Bio::ClusterIO::unigene" : {
- "file" : "Bio/ClusterIO/unigene.pm"
+ "file" : "Bio/ClusterIO/unigene.pm",
+ "version" : "1.007001"
},
"Bio::CodonUsage::IO" : {
- "file" : "Bio/CodonUsage/IO.pm"
+ "file" : "Bio/CodonUsage/IO.pm",
+ "version" : "1.007001"
},
"Bio::CodonUsage::Table" : {
- "file" : "Bio/CodonUsage/Table.pm"
+ "file" : "Bio/CodonUsage/Table.pm",
+ "version" : "1.007001"
},
"Bio::DB::Ace" : {
- "file" : "Bio/DB/Ace.pm"
+ "file" : "Bio/DB/Ace.pm",
+ "version" : "1.007001"
},
"Bio::DB::BioFetch" : {
- "file" : "Bio/DB/BioFetch.pm"
+ "file" : "Bio/DB/BioFetch.pm",
+ "version" : "1.007001"
},
"Bio::DB::CUTG" : {
- "file" : "Bio/DB/CUTG.pm"
+ "file" : "Bio/DB/CUTG.pm",
+ "version" : "1.007001"
},
"Bio::DB::DBFetch" : {
- "file" : "Bio/DB/DBFetch.pm"
+ "file" : "Bio/DB/DBFetch.pm",
+ "version" : "1.007001"
},
"Bio::DB::EMBL" : {
- "file" : "Bio/DB/EMBL.pm"
+ "file" : "Bio/DB/EMBL.pm",
+ "version" : "1.007001"
},
"Bio::DB::EntrezGene" : {
- "file" : "Bio/DB/EntrezGene.pm"
+ "file" : "Bio/DB/EntrezGene.pm",
+ "version" : "1.007001"
},
"Bio::DB::Expression" : {
- "file" : "Bio/DB/Expression.pm"
+ "file" : "Bio/DB/Expression.pm",
+ "version" : "1.007001"
},
"Bio::DB::Expression::geo" : {
- "file" : "Bio/DB/Expression/geo.pm"
+ "file" : "Bio/DB/Expression/geo.pm",
+ "version" : "1.007001"
},
"Bio::DB::Failover" : {
- "file" : "Bio/DB/Failover.pm"
+ "file" : "Bio/DB/Failover.pm",
+ "version" : "1.007001"
},
"Bio::DB::Fasta" : {
- "file" : "Bio/DB/Fasta.pm"
+ "file" : "Bio/DB/Fasta.pm",
+ "version" : "1.007001"
},
"Bio::DB::Fasta::Subdir" : {
- "file" : "Bio/DB/SeqFeature/Store/berkeleydb.pm"
+ "file" : "Bio/DB/SeqFeature/Store/berkeleydb.pm",
+ "version" : "1.007001"
},
"Bio::DB::FileCache" : {
- "file" : "Bio/DB/FileCache.pm"
+ "file" : "Bio/DB/FileCache.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat" : {
- "file" : "Bio/DB/Flat.pm"
+ "file" : "Bio/DB/Flat.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BDB" : {
- "file" : "Bio/DB/Flat/BDB.pm"
+ "file" : "Bio/DB/Flat/BDB.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BDB::embl" : {
- "file" : "Bio/DB/Flat/BDB/embl.pm"
+ "file" : "Bio/DB/Flat/BDB/embl.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BDB::fasta" : {
- "file" : "Bio/DB/Flat/BDB/fasta.pm"
+ "file" : "Bio/DB/Flat/BDB/fasta.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BDB::genbank" : {
- "file" : "Bio/DB/Flat/BDB/genbank.pm"
+ "file" : "Bio/DB/Flat/BDB/genbank.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BDB::swiss" : {
- "file" : "Bio/DB/Flat/BDB/swiss.pm"
+ "file" : "Bio/DB/Flat/BDB/swiss.pm",
+ "version" : "1.007001"
},
"Bio::DB::Flat::BinarySearch" : {
- "file" : "Bio/DB/Flat/BinarySearch.pm"
+ "file" : "Bio/DB/Flat/BinarySearch.pm",
+ "version" : "1.007001"
},
"Bio::DB::GFF" : {
- "file" : "Bio/DB/GFF.pm"
+ "file" : "Bio/DB/GFF.pm",
+ "version" : "1.007001"
},
"Bio::DB::GFF::Adaptor::ace" : {
- "file" : "Bio/DB/GFF/Adaptor/ace.pm"
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+ "file" : "Bio/Search/HSP/GenericHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::HMMERHSP" : {
- "file" : "Bio/Search/HSP/HMMERHSP.pm"
+ "file" : "Bio/Search/HSP/HMMERHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::HSPFactory" : {
- "file" : "Bio/Search/HSP/HSPFactory.pm"
+ "file" : "Bio/Search/HSP/HSPFactory.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::HSPI" : {
- "file" : "Bio/Search/HSP/HSPI.pm"
+ "file" : "Bio/Search/Tiling/MapTileUtils.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::HmmpfamHSP" : {
- "file" : "Bio/Search/HSP/HmmpfamHSP.pm"
+ "file" : "Bio/Search/HSP/HmmpfamHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::ModelHSP" : {
- "file" : "Bio/Search/HSP/ModelHSP.pm"
+ "file" : "Bio/Search/HSP/ModelHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::PSLHSP" : {
- "file" : "Bio/Search/HSP/PSLHSP.pm"
+ "file" : "Bio/Search/HSP/PSLHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::PsiBlastHSP" : {
- "file" : "Bio/Search/HSP/PsiBlastHSP.pm"
+ "file" : "Bio/Search/HSP/PsiBlastHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::PullHSPI" : {
- "file" : "Bio/Search/HSP/PullHSPI.pm"
+ "file" : "Bio/Search/HSP/PullHSPI.pm",
+ "version" : "1.007001"
},
"Bio::Search::HSP::WABAHSP" : {
- "file" : "Bio/Search/HSP/WABAHSP.pm"
+ "file" : "Bio/Search/HSP/WABAHSP.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::BlastHit" : {
- "file" : "Bio/Search/Hit/BlastHit.pm"
+ "file" : "Bio/Search/Hit/BlastHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::BlastPullHit" : {
- "file" : "Bio/Search/Hit/BlastPullHit.pm"
+ "file" : "Bio/Search/Hit/BlastPullHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::Fasta" : {
- "file" : "Bio/Search/Hit/Fasta.pm"
+ "file" : "Bio/Search/Hit/Fasta.pm",
+ "version" : "1.007001"
},
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- "file" : "Bio/Search/Hit/GenericHit.pm"
+ "file" : "Bio/Search/Hit/GenericHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::HMMERHit" : {
- "file" : "Bio/Search/Hit/HMMERHit.pm"
+ "file" : "Bio/Search/Hit/HMMERHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::HitFactory" : {
- "file" : "Bio/Search/Hit/HitFactory.pm"
+ "file" : "Bio/Search/Hit/HitFactory.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::HitI" : {
- "file" : "Bio/Search/Hit/HitI.pm"
+ "file" : "Bio/Search/Hit/HitI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::HmmpfamHit" : {
- "file" : "Bio/Search/Hit/HmmpfamHit.pm"
+ "file" : "Bio/Search/Hit/HmmpfamHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::ModelHit" : {
- "file" : "Bio/Search/Hit/ModelHit.pm"
+ "file" : "Bio/Search/Hit/ModelHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::PsiBlastHit" : {
- "file" : "Bio/Search/Hit/PsiBlastHit.pm"
+ "file" : "Bio/Search/Hit/PsiBlastHit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::PullHitI" : {
- "file" : "Bio/Search/Hit/PullHitI.pm"
+ "file" : "Bio/Search/Hit/PullHitI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Hit::hmmer3Hit" : {
- "file" : "Bio/Search/Hit/hmmer3Hit.pm"
+ "file" : "Bio/Search/Hit/hmmer3Hit.pm",
+ "version" : "1.007001"
},
"Bio::Search::Iteration::GenericIteration" : {
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+ "file" : "Bio/Search/Iteration/GenericIteration.pm",
+ "version" : "1.007001"
},
"Bio::Search::Iteration::IterationI" : {
- "file" : "Bio/Search/Iteration/IterationI.pm"
+ "file" : "Bio/Search/Iteration/IterationI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Processor" : {
- "file" : "Bio/Search/Processor.pm"
+ "file" : "Bio/Search/Processor.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::BlastPullResult" : {
- "file" : "Bio/Search/Result/BlastPullResult.pm"
+ "file" : "Bio/Search/Result/BlastPullResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::BlastResult" : {
- "file" : "Bio/Search/Result/BlastResult.pm"
+ "file" : "Bio/Search/Result/BlastResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::CrossMatchResult" : {
- "file" : "Bio/Search/Result/CrossMatchResult.pm"
+ "file" : "Bio/Search/Result/CrossMatchResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::GenericResult" : {
- "file" : "Bio/Search/Result/GenericResult.pm"
+ "file" : "Bio/Search/Result/GenericResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::HMMERResult" : {
- "file" : "Bio/Search/Result/HMMERResult.pm"
+ "file" : "Bio/Search/Result/HMMERResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::HmmpfamResult" : {
- "file" : "Bio/Search/Result/HmmpfamResult.pm"
+ "file" : "Bio/Search/Result/HmmpfamResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::INFERNALResult" : {
- "file" : "Bio/Search/Result/INFERNALResult.pm"
+ "file" : "Bio/Search/Result/INFERNALResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::PullResultI" : {
- "file" : "Bio/Search/Result/PullResultI.pm"
+ "file" : "Bio/Search/Result/PullResultI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::ResultFactory" : {
- "file" : "Bio/Search/Result/ResultFactory.pm"
+ "file" : "Bio/Search/Result/ResultFactory.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::ResultI" : {
- "file" : "Bio/Search/Result/ResultI.pm"
+ "file" : "Bio/Search/Result/ResultI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::WABAResult" : {
- "file" : "Bio/Search/Result/WABAResult.pm"
+ "file" : "Bio/Search/Result/WABAResult.pm",
+ "version" : "1.007001"
},
"Bio::Search::Result::hmmer3Result" : {
- "file" : "Bio/Search/Result/hmmer3Result.pm"
+ "file" : "Bio/Search/Result/hmmer3Result.pm",
+ "version" : "1.007001"
},
"Bio::Search::SearchUtils" : {
- "file" : "Bio/Search/SearchUtils.pm"
+ "file" : "Bio/Search/SearchUtils.pm",
+ "version" : "1.007001"
},
"Bio::Search::StatisticsI" : {
- "file" : "Bio/Search/StatisticsI.pm"
+ "file" : "Bio/Search/StatisticsI.pm",
+ "version" : "1.007001"
},
"Bio::Search::Tiling::MapTileUtils" : {
- "file" : "Bio/Search/Tiling/MapTileUtils.pm"
+ "file" : "Bio/Search/Tiling/MapTileUtils.pm",
+ "version" : "1.007001"
},
"Bio::Search::Tiling::MapTiling" : {
- "file" : "Bio/Search/Tiling/MapTiling.pm"
+ "file" : "Bio/Search/Tiling/MapTiling.pm",
+ "version" : "1.007001"
},
"Bio::Search::Tiling::TilingI" : {
- "file" : "Bio/Search/Tiling/TilingI.pm"
+ "file" : "Bio/Search/Tiling/TilingI.pm",
+ "version" : "1.007001"
},
"Bio::SearchDist" : {
- "file" : "Bio/SearchDist.pm"
+ "file" : "Bio/SearchDist.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO" : {
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+ "file" : "Bio/SearchIO.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::EventHandlerI" : {
- "file" : "Bio/SearchIO/EventHandlerI.pm"
+ "file" : "Bio/SearchIO/EventHandlerI.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::FastHitEventBuilder" : {
- "file" : "Bio/SearchIO/FastHitEventBuilder.pm"
+ "file" : "Bio/SearchIO/FastHitEventBuilder.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::IteratedSearchResultEventBuilder" : {
- "file" : "Bio/SearchIO/IteratedSearchResultEventBuilder.pm"
+ "file" : "Bio/SearchIO/IteratedSearchResultEventBuilder.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::SearchResultEventBuilder" : {
- "file" : "Bio/SearchIO/SearchResultEventBuilder.pm"
+ "file" : "Bio/SearchIO/SearchResultEventBuilder.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::SearchWriterI" : {
- "file" : "Bio/SearchIO/SearchWriterI.pm"
+ "file" : "Bio/SearchIO/SearchWriterI.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::GbrowseGFF" : {
- "file" : "Bio/SearchIO/Writer/GbrowseGFF.pm"
+ "file" : "Bio/SearchIO/Writer/GbrowseGFF.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::HSPTableWriter" : {
- "file" : "Bio/SearchIO/Writer/HSPTableWriter.pm"
+ "file" : "Bio/SearchIO/Writer/HSPTableWriter.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::HTMLResultWriter" : {
- "file" : "Bio/SearchIO/Writer/HTMLResultWriter.pm"
+ "file" : "Bio/SearchIO/Writer/HTMLResultWriter.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::HitTableWriter" : {
- "file" : "Bio/SearchIO/Writer/HitTableWriter.pm"
+ "file" : "Bio/SearchIO/Writer/HitTableWriter.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::ResultTableWriter" : {
- "file" : "Bio/SearchIO/Writer/ResultTableWriter.pm"
+ "file" : "Bio/SearchIO/Writer/ResultTableWriter.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::Writer::TextResultWriter" : {
- "file" : "Bio/SearchIO/Writer/TextResultWriter.pm"
+ "file" : "Bio/SearchIO/Writer/TextResultWriter.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::axt" : {
- "file" : "Bio/SearchIO/axt.pm"
+ "file" : "Bio/SearchIO/axt.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::blast" : {
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+ "file" : "Bio/SearchIO/blast.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SearchIO/blast_pull.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::blasttable" : {
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+ "file" : "Bio/SearchIO/blasttable.pm",
+ "version" : "1.007001"
},
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- "file" : "Bio/SearchIO/cross_match.pm"
+ "file" : "Bio/SearchIO/cross_match.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::erpin" : {
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+ "file" : "Bio/SearchIO/erpin.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::exonerate" : {
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+ "file" : "Bio/SearchIO/exonerate.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::fasta" : {
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+ "file" : "Bio/SearchIO/fasta.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::gmap_f9" : {
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+ "file" : "Bio/SearchIO/gmap_f9.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::hmmer" : {
- "file" : "Bio/SearchIO/hmmer.pm"
+ "file" : "Bio/SearchIO/hmmer.pm",
+ "version" : "1.007001"
},
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- "file" : "Bio/SearchIO/hmmer2.pm"
+ "file" : "Bio/SearchIO/hmmer2.pm",
+ "version" : "1.007001"
},
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- "file" : "Bio/SearchIO/hmmer3.pm"
+ "file" : "Bio/SearchIO/hmmer3.pm",
+ "version" : "1.007001"
},
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- "file" : "Bio/SearchIO/hmmer_pull.pm"
+ "file" : "Bio/SearchIO/hmmer_pull.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::infernal" : {
- "file" : "Bio/SearchIO/infernal.pm"
+ "file" : "Bio/SearchIO/infernal.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::megablast" : {
- "file" : "Bio/SearchIO/megablast.pm"
+ "file" : "Bio/SearchIO/megablast.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::psl" : {
- "file" : "Bio/SearchIO/psl.pm"
+ "file" : "Bio/SearchIO/psl.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::rnamotif" : {
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+ "file" : "Bio/SearchIO/rnamotif.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::sim4" : {
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+ "file" : "Bio/SearchIO/sim4.pm",
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},
"Bio::SearchIO::waba" : {
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+ "file" : "Bio/SearchIO/waba.pm",
+ "version" : "1.007001"
},
"Bio::SearchIO::wise" : {
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+ "file" : "Bio/SearchIO/wise.pm",
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},
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+ "file" : "Bio/Seq.pm",
+ "version" : "1.007001"
},
"Bio::Seq::BaseSeqProcessor" : {
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+ "file" : "Bio/Seq/BaseSeqProcessor.pm",
+ "version" : "1.007001"
},
"Bio::Seq::EncodedSeq" : {
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+ "file" : "Bio/Seq/EncodedSeq.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/LargeLocatableSeq.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/LargePrimarySeq.pm",
+ "version" : "1.007001"
},
"Bio::Seq::LargeSeq" : {
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+ "file" : "Bio/Seq/LargeSeq.pm",
+ "version" : "1.007001"
},
"Bio::Seq::LargeSeqI" : {
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+ "file" : "Bio/Seq/LargeSeqI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/Meta.pm",
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},
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+ "file" : "Bio/Seq/Meta/Array.pm",
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},
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+ "file" : "Bio/Seq/MetaI.pm",
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},
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+ "file" : "Bio/Seq/PrimaryQual.pm",
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},
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+ "file" : "Bio/DB/Qual.pm",
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},
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+ "file" : "Bio/Seq/PrimedSeq.pm",
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},
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+ "file" : "Bio/Seq/QualI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/Quality.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/RichSeq.pm",
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},
"Bio::Seq::RichSeqI" : {
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+ "file" : "Bio/Seq/RichSeqI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/SeqBuilder.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/SeqFactory.pm",
+ "version" : "1.007001"
},
"Bio::Seq::SeqFastaSpeedFactory" : {
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+ "file" : "Bio/Seq/SeqFastaSpeedFactory.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/SeqWithQuality.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/Seq/SequenceTrace.pm",
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},
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+ "file" : "Bio/Seq/SimulatedRead.pm",
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},
"Bio::Seq::TraceI" : {
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+ "file" : "Bio/Seq/TraceI.pm",
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},
"Bio::SeqAnalysisParserI" : {
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+ "file" : "Bio/SeqAnalysisParserI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqEvolution/DNAPoint.pm",
+ "version" : "1.007001"
},
"Bio::SeqEvolution::EvolutionI" : {
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+ "file" : "Bio/SeqEvolution/EvolutionI.pm",
+ "version" : "1.007001"
},
"Bio::SeqEvolution::Factory" : {
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+ "file" : "Bio/SeqEvolution/Factory.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Amplicon.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/AnnotationAdaptor.pm",
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},
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+ "file" : "Bio/SeqFeature/Collection.pm",
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},
"Bio::SeqFeature::CollectionI" : {
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+ "file" : "Bio/SeqFeature/CollectionI.pm",
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},
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+ "file" : "Bio/SeqFeature/Computation.pm",
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},
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+ "file" : "Bio/SeqFeature/FeaturePair.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/Exon.pm",
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},
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+ "file" : "Bio/SeqFeature/Gene/ExonI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/GeneStructure.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/GeneStructureI.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/Intron.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/NC_Feature.pm",
+ "version" : "1.007001"
},
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+ "file" : "Bio/SeqFeature/Gene/Poly_A_site.pm",
+ "version" : "1.007001"
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+ "file" : "Bio/SeqFeature/Gene/Promoter.pm",
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+ "file" : "Bio/SeqFeature/Gene/Transcript.pm",
+ "version" : "1.007001"
},
"Bio::SeqFeature::Gene::TranscriptI" : {
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+ "file" : "Bio/SeqFeature/Gene/TranscriptI.pm",
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- "file" : "Bio/Tools/Eponine.pm"
+ "file" : "Bio/Tools/Eponine.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Est2Genome" : {
- "file" : "Bio/Tools/Est2Genome.pm"
+ "file" : "Bio/Tools/Est2Genome.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Fgenesh" : {
- "file" : "Bio/Tools/Fgenesh.pm"
+ "file" : "Bio/Tools/Fgenesh.pm",
+ "version" : "1.007001"
},
"Bio::Tools::FootPrinter" : {
- "file" : "Bio/Tools/FootPrinter.pm"
+ "file" : "Bio/Tools/FootPrinter.pm",
+ "version" : "1.007001"
},
"Bio::Tools::GFF" : {
- "file" : "Bio/Tools/GFF.pm"
+ "file" : "Bio/Tools/GFF.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Gel" : {
- "file" : "Bio/Tools/Gel.pm"
+ "file" : "Bio/Tools/Gel.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Geneid" : {
- "file" : "Bio/Tools/Geneid.pm"
+ "file" : "Bio/Tools/Geneid.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Genemark" : {
- "file" : "Bio/Tools/Genemark.pm"
+ "file" : "Bio/Tools/Genemark.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Genewise" : {
- "file" : "Bio/Tools/Genewise.pm"
+ "file" : "Bio/Tools/Genewise.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Genomewise" : {
- "file" : "Bio/Tools/Genomewise.pm"
+ "file" : "Bio/Tools/Genomewise.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Genscan" : {
- "file" : "Bio/Tools/Genscan.pm"
+ "file" : "Bio/Tools/Genscan.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Glimmer" : {
- "file" : "Bio/Tools/Glimmer.pm"
+ "file" : "Bio/Tools/Glimmer.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Grail" : {
- "file" : "Bio/Tools/Grail.pm"
+ "file" : "Bio/Tools/Grail.pm",
+ "version" : "1.007001"
},
"Bio::Tools::GuessSeqFormat" : {
- "file" : "Bio/Tools/GuessSeqFormat.pm"
+ "file" : "Bio/Tools/GuessSeqFormat.pm",
+ "version" : "1.007001"
},
"Bio::Tools::HMMER::Domain" : {
- "file" : "Bio/Tools/HMMER/Domain.pm"
+ "file" : "Bio/Tools/HMMER/Domain.pm",
+ "version" : "1.007001"
},
"Bio::Tools::HMMER::Results" : {
- "file" : "Bio/Tools/HMMER/Results.pm"
+ "file" : "Bio/Tools/HMMER/Results.pm",
+ "version" : "1.007001"
},
"Bio::Tools::HMMER::Set" : {
- "file" : "Bio/Tools/HMMER/Set.pm"
+ "file" : "Bio/Tools/HMMER/Set.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Hmmpfam" : {
- "file" : "Bio/Tools/Hmmpfam.pm"
+ "file" : "Bio/Tools/Hmmpfam.pm",
+ "version" : "1.007001"
},
"Bio::Tools::IUPAC" : {
- "file" : "Bio/Tools/IUPAC.pm"
+ "file" : "Bio/Tools/IUPAC.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Lucy" : {
- "file" : "Bio/Tools/Lucy.pm"
+ "file" : "Bio/Tools/Lucy.pm",
+ "version" : "1.007001"
},
"Bio::Tools::MZEF" : {
- "file" : "Bio/Tools/MZEF.pm"
+ "file" : "Bio/Tools/MZEF.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Match" : {
- "file" : "Bio/Tools/Match.pm"
+ "file" : "Bio/Tools/Match.pm",
+ "version" : "1.007001"
},
"Bio::Tools::OddCodes" : {
- "file" : "Bio/Tools/OddCodes.pm"
+ "file" : "Bio/Tools/OddCodes.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::Gerp" : {
- "file" : "Bio/Tools/Phylo/Gerp.pm"
+ "file" : "Bio/Tools/Phylo/Gerp.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::Gumby" : {
- "file" : "Bio/Tools/Phylo/Gumby.pm"
+ "file" : "Bio/Tools/Phylo/Gumby.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::Molphy" : {
- "file" : "Bio/Tools/Phylo/Molphy.pm"
+ "file" : "Bio/Tools/Phylo/Molphy.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::Molphy::Result" : {
- "file" : "Bio/Tools/Phylo/Molphy/Result.pm"
+ "file" : "Bio/Tools/Phylo/Molphy/Result.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::PAML" : {
- "file" : "Bio/Tools/Phylo/PAML.pm"
+ "file" : "Bio/Tools/Phylo/PAML.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::PAML::Codeml" : {
- "file" : "Bio/Tools/Phylo/PAML/Codeml.pm"
+ "file" : "Bio/Tools/Phylo/PAML/Codeml.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::PAML::ModelResult" : {
- "file" : "Bio/Tools/Phylo/PAML/ModelResult.pm"
+ "file" : "Bio/Tools/Phylo/PAML/ModelResult.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::PAML::Result" : {
- "file" : "Bio/Tools/Phylo/PAML/Result.pm"
+ "file" : "Bio/Tools/Phylo/PAML/Result.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Phylo::Phylip::ProtDist" : {
- "file" : "Bio/Tools/Phylo/Phylip/ProtDist.pm"
+ "file" : "Bio/Tools/Phylo/Phylip/ProtDist.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Prediction::Exon" : {
- "file" : "Bio/Tools/Prediction/Exon.pm"
+ "file" : "Bio/Tools/Prediction/Exon.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Prediction::Gene" : {
- "file" : "Bio/Tools/Prediction/Gene.pm"
+ "file" : "Bio/Tools/Prediction/Gene.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Primer3" : {
- "file" : "Bio/Tools/Primer3.pm"
+ "file" : "Bio/Tools/Primer3.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Primer::Assessor::Base" : {
- "file" : "Bio/Tools/Primer/Assessor/Base.pm"
+ "file" : "Bio/Tools/Primer/Assessor/Base.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Primer::AssessorI" : {
- "file" : "Bio/Tools/Primer/AssessorI.pm"
+ "file" : "Bio/Tools/Primer/AssessorI.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Primer::Feature" : {
- "file" : "Bio/Tools/Primer/Feature.pm"
+ "file" : "Bio/Tools/Primer/Feature.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Primer::Pair" : {
- "file" : "Bio/Tools/Primer/Pair.pm"
+ "file" : "Bio/Tools/Primer/Pair.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Prints" : {
- "file" : "Bio/Tools/Prints.pm"
+ "file" : "Bio/Tools/Prints.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Profile" : {
- "file" : "Bio/Tools/Profile.pm"
+ "file" : "Bio/Tools/Profile.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Promoterwise" : {
- "file" : "Bio/Tools/Promoterwise.pm"
+ "file" : "Bio/Tools/Promoterwise.pm",
+ "version" : "1.007001"
},
"Bio::Tools::PrositeScan" : {
- "file" : "Bio/Tools/PrositeScan.pm"
+ "file" : "Bio/Tools/PrositeScan.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Protparam" : {
- "file" : "Bio/Tools/Protparam.pm"
+ "file" : "Bio/Tools/Protparam.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Pseudowise" : {
- "file" : "Bio/Tools/Pseudowise.pm"
+ "file" : "Bio/Tools/Pseudowise.pm",
+ "version" : "1.007001"
},
"Bio::Tools::QRNA" : {
- "file" : "Bio/Tools/QRNA.pm"
+ "file" : "Bio/Tools/QRNA.pm",
+ "version" : "1.007001"
},
"Bio::Tools::RandomDistFunctions" : {
- "file" : "Bio/Tools/RandomDistFunctions.pm"
+ "file" : "Bio/Tools/RandomDistFunctions.pm",
+ "version" : "1.007001"
},
"Bio::Tools::RepeatMasker" : {
- "file" : "Bio/Tools/RepeatMasker.pm"
+ "file" : "Bio/Tools/RepeatMasker.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Run::GenericParameters" : {
- "file" : "Bio/Tools/Run/GenericParameters.pm"
+ "file" : "Bio/Tools/Run/GenericParameters.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Run::ParametersI" : {
- "file" : "Bio/Tools/Run/ParametersI.pm"
+ "file" : "Bio/Tools/Run/ParametersI.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Run::RemoteBlast" : {
- "file" : "Bio/Tools/Run/RemoteBlast.pm"
+ "file" : "Bio/Tools/Run/RemoteBlast.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Seg" : {
- "file" : "Bio/Tools/Seg.pm"
+ "file" : "Bio/Tools/Seg.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SeqPattern" : {
- "file" : "Bio/Tools/SeqPattern.pm"
+ "file" : "Bio/Tools/SeqPattern.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SeqPattern::Backtranslate" : {
- "file" : "Bio/Tools/SeqPattern/Backtranslate.pm"
+ "file" : "Bio/Tools/SeqPattern/Backtranslate.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SeqStats" : {
- "file" : "Bio/Tools/SeqStats.pm"
+ "file" : "Bio/Tools/SeqStats.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SeqWords" : {
- "file" : "Bio/Tools/SeqWords.pm"
+ "file" : "Bio/Tools/SeqWords.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SiRNA" : {
- "file" : "Bio/Tools/SiRNA.pm"
+ "file" : "Bio/Tools/SiRNA.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SiRNA::Ruleset::saigo" : {
- "file" : "Bio/Tools/SiRNA/Ruleset/saigo.pm"
+ "file" : "Bio/Tools/SiRNA/Ruleset/saigo.pm",
+ "version" : "1.007001"
},
"Bio::Tools::SiRNA::Ruleset::tuschl" : {
- "file" : "Bio/Tools/SiRNA/Ruleset/tuschl.pm"
+ "file" : "Bio/Tools/SiRNA/Ruleset/tuschl.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Sigcleave" : {
- "file" : "Bio/Tools/Sigcleave.pm"
+ "file" : "Bio/Tools/Sigcleave.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Signalp" : {
- "file" : "Bio/Tools/Signalp.pm"
+ "file" : "Bio/Tools/Signalp.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Signalp::ExtendedSignalp" : {
- "file" : "Bio/Tools/Signalp/ExtendedSignalp.pm"
+ "file" : "Bio/Tools/Signalp/ExtendedSignalp.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Sim4::Exon" : {
- "file" : "Bio/Tools/Sim4/Exon.pm"
+ "file" : "Bio/Tools/Sim4/Exon.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Sim4::Results" : {
- "file" : "Bio/Tools/Sim4/Results.pm"
+ "file" : "Bio/Tools/Sim4/Results.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Spidey::Exon" : {
- "file" : "Bio/Tools/Spidey/Exon.pm"
+ "file" : "Bio/Tools/Spidey/Exon.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Spidey::Results" : {
- "file" : "Bio/Tools/Spidey/Results.pm"
+ "file" : "Bio/Tools/Spidey/Results.pm",
+ "version" : "1.007001"
},
"Bio::Tools::TandemRepeatsFinder" : {
- "file" : "Bio/Tools/TandemRepeatsFinder.pm"
+ "file" : "Bio/Tools/TandemRepeatsFinder.pm",
+ "version" : "1.007001"
},
"Bio::Tools::TargetP" : {
- "file" : "Bio/Tools/TargetP.pm"
+ "file" : "Bio/Tools/TargetP.pm",
+ "version" : "1.007001"
},
"Bio::Tools::Tmhmm" : {
- "file" : "Bio/Tools/Tmhmm.pm"
+ "file" : "Bio/Tools/Tmhmm.pm",
+ "version" : "1.007001"
},
"Bio::Tools::dpAlign" : {
- "file" : "Bio/Tools/dpAlign.pm"
+ "file" : "Bio/Tools/dpAlign.pm",
+ "version" : "1.007001"
},
"Bio::Tools::ipcress" : {
- "file" : "Bio/Tools/ipcress.pm"
+ "file" : "Bio/Tools/ipcress.pm",
+ "version" : "1.007001"
},
"Bio::Tools::isPcr" : {
- "file" : "Bio/Tools/isPcr.pm"
+ "file" : "Bio/Tools/isPcr.pm",
+ "version" : "1.007001"
},
"Bio::Tools::pICalculator" : {
- "file" : "Bio/Tools/pICalculator.pm"
+ "file" : "Bio/Tools/pICalculator.pm",
+ "version" : "1.007001"
},
"Bio::Tools::pSW" : {
- "file" : "Bio/Tools/pSW.pm"
+ "file" : "Bio/Tools/pSW.pm",
+ "version" : "1.007001"
},
"Bio::Tools::tRNAscanSE" : {
- "file" : "Bio/Tools/tRNAscanSE.pm"
+ "file" : "Bio/Tools/tRNAscanSE.pm",
+ "version" : "1.007001"
},
"Bio::Tree::AlleleNode" : {
- "file" : "Bio/Tree/AlleleNode.pm"
+ "file" : "Bio/Tree/AlleleNode.pm",
+ "version" : "1.007001"
},
"Bio::Tree::AnnotatableNode" : {
- "file" : "Bio/Tree/AnnotatableNode.pm"
+ "file" : "Bio/Tree/AnnotatableNode.pm",
+ "version" : "1.007001"
},
"Bio::Tree::Compatible" : {
- "file" : "Bio/Tree/Compatible.pm"
+ "file" : "Bio/Tree/Compatible.pm",
+ "version" : "1.007001"
},
"Bio::Tree::DistanceFactory" : {
- "file" : "Bio/Tree/DistanceFactory.pm"
+ "file" : "Bio/Tree/DistanceFactory.pm",
+ "version" : "1.007001"
},
"Bio::Tree::Draw::Cladogram" : {
- "file" : "Bio/Tree/Draw/Cladogram.pm"
+ "file" : "Bio/Tree/Draw/Cladogram.pm",
+ "version" : "1.007001"
},
"Bio::Tree::Node" : {
- "file" : "Bio/Tree/Node.pm"
+ "file" : "Bio/Tree/Node.pm",
+ "version" : "1.007001"
},
"Bio::Tree::NodeI" : {
- "file" : "Bio/Tree/NodeI.pm"
+ "file" : "Bio/Tree/NodeI.pm",
+ "version" : "1.007001"
},
"Bio::Tree::NodeNHX" : {
- "file" : "Bio/Tree/NodeNHX.pm"
+ "file" : "Bio/Tree/NodeNHX.pm",
+ "version" : "1.007001"
},
"Bio::Tree::RandomFactory" : {
- "file" : "Bio/Tree/RandomFactory.pm"
+ "file" : "Bio/Tree/RandomFactory.pm",
+ "version" : "1.007001"
},
"Bio::Tree::Statistics" : {
- "file" : "Bio/Tree/Statistics.pm"
+ "file" : "Bio/Tree/Statistics.pm",
+ "version" : "1.007001"
},
"Bio::Tree::Tree" : {
- "file" : "Bio/Tree/Tree.pm"
+ "file" : "Bio/Tree/Tree.pm",
+ "version" : "1.007001"
},
"Bio::Tree::TreeFunctionsI" : {
- "file" : "Bio/Tree/TreeFunctionsI.pm"
+ "file" : "Bio/Tree/TreeFunctionsI.pm",
+ "version" : "1.007001"
},
"Bio::Tree::TreeI" : {
- "file" : "Bio/Tree/TreeI.pm"
+ "file" : "Bio/Tree/TreeI.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO" : {
- "file" : "Bio/TreeIO.pm"
+ "file" : "Bio/TreeIO.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::NewickParser" : {
- "file" : "Bio/TreeIO/NewickParser.pm"
+ "file" : "Bio/TreeIO/NewickParser.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::TreeEventBuilder" : {
- "file" : "Bio/TreeIO/TreeEventBuilder.pm"
+ "file" : "Bio/TreeIO/TreeEventBuilder.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::cluster" : {
- "file" : "Bio/TreeIO/cluster.pm"
+ "file" : "Bio/TreeIO/cluster.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::lintree" : {
- "file" : "Bio/TreeIO/lintree.pm"
+ "file" : "Bio/TreeIO/lintree.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::newick" : {
- "file" : "Bio/TreeIO/newick.pm"
+ "file" : "Bio/TreeIO/newick.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::nexml" : {
- "file" : "Bio/TreeIO/nexml.pm"
+ "file" : "Bio/TreeIO/nexml.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::nexus" : {
- "file" : "Bio/TreeIO/nexus.pm"
+ "file" : "Bio/TreeIO/nexus.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::nhx" : {
- "file" : "Bio/TreeIO/nhx.pm"
+ "file" : "Bio/TreeIO/nhx.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::pag" : {
- "file" : "Bio/TreeIO/pag.pm"
+ "file" : "Bio/TreeIO/pag.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::phyloxml" : {
- "file" : "Bio/TreeIO/phyloxml.pm"
+ "file" : "Bio/TreeIO/phyloxml.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::svggraph" : {
- "file" : "Bio/TreeIO/svggraph.pm"
+ "file" : "Bio/TreeIO/svggraph.pm",
+ "version" : "1.007001"
},
"Bio::TreeIO::tabtree" : {
- "file" : "Bio/TreeIO/tabtree.pm"
+ "file" : "Bio/TreeIO/tabtree.pm",
+ "version" : "1.007001"
},
"Bio::UpdateableSeqI" : {
- "file" : "Bio/UpdateableSeqI.pm"
+ "file" : "Bio/UpdateableSeqI.pm",
+ "version" : "1.007001"
},
"Bio::Variation::AAChange" : {
- "file" : "Bio/Variation/AAChange.pm"
+ "file" : "Bio/Variation/AAChange.pm",
+ "version" : "1.007001"
},
"Bio::Variation::AAReverseMutate" : {
- "file" : "Bio/Variation/AAReverseMutate.pm"
+ "file" : "Bio/Variation/AAReverseMutate.pm",
+ "version" : "1.007001"
},
"Bio::Variation::Allele" : {
- "file" : "Bio/Variation/Allele.pm"
+ "file" : "Bio/Variation/Allele.pm",
+ "version" : "1.007001"
},
"Bio::Variation::DNAMutation" : {
- "file" : "Bio/Variation/DNAMutation.pm"
+ "file" : "Bio/Variation/DNAMutation.pm",
+ "version" : "1.007001"
},
"Bio::Variation::IO" : {
- "file" : "Bio/Variation/IO.pm"
+ "file" : "Bio/Variation/IO.pm",
+ "version" : "1.007001"
},
"Bio::Variation::IO::flat" : {
- "file" : "Bio/Variation/IO/flat.pm"
+ "file" : "Bio/Variation/IO/flat.pm",
+ "version" : "1.007001"
},
"Bio::Variation::IO::xml" : {
- "file" : "Bio/Variation/IO/xml.pm"
+ "file" : "Bio/Variation/IO/xml.pm",
+ "version" : "1.007001"
},
"Bio::Variation::RNAChange" : {
- "file" : "Bio/Variation/RNAChange.pm"
+ "file" : "Bio/Variation/RNAChange.pm",
+ "version" : "1.007001"
},
"Bio::Variation::SNP" : {
- "file" : "Bio/Variation/SNP.pm"
+ "file" : "Bio/Variation/SNP.pm",
+ "version" : "1.007001"
},
"Bio::Variation::SeqDiff" : {
- "file" : "Bio/Variation/SeqDiff.pm"
+ "file" : "Bio/Variation/SeqDiff.pm",
+ "version" : "1.007001"
},
"Bio::Variation::VariantI" : {
- "file" : "Bio/Variation/VariantI.pm"
+ "file" : "Bio/Variation/VariantI.pm",
+ "version" : "1.007001"
},
"Bio::WebAgent" : {
- "file" : "Bio/WebAgent.pm"
+ "file" : "Bio/WebAgent.pm",
+ "version" : "1.007001"
},
"FeatureStore" : {
- "file" : "Bio/DB/GFF/Adaptor/berkeleydb.pm"
+ "file" : "Bio/DB/GFF/Adaptor/berkeleydb.pm",
+ "version" : "1.007001"
}
},
"release_status" : "stable",
@@ -2498,5 +3298,5 @@
"http://dev.perl.org/licenses/"
]
},
- "version" : "1.007000"
+ "version" : "1.007001"
}
diff --git a/META.yml b/META.yml
index f4fc9c2..e36d406 100644
--- a/META.yml
+++ b/META.yml
@@ -20,1613 +20,2413 @@ name: BioPerl
provides:
Bio::Align::AlignI:
file: Bio/Align/AlignI.pm
+ version: '1.007001'
Bio::Align::DNAStatistics:
file: Bio/Align/DNAStatistics.pm
+ version: '1.007001'
Bio::Align::Graphics:
file: Bio/Align/Graphics.pm
+ version: '1.007001'
Bio::Align::PairwiseStatistics:
file: Bio/Align/PairwiseStatistics.pm
+ version: '1.007001'
Bio::Align::ProteinStatistics:
file: Bio/Align/ProteinStatistics.pm
+ version: '1.007001'
Bio::Align::StatisticsI:
file: Bio/Align/StatisticsI.pm
+ version: '1.007001'
Bio::Align::Utilities:
file: Bio/Align/Utilities.pm
+ version: '1.007001'
Bio::AlignIO:
file: Bio/AlignIO.pm
+ version: '1.007001'
Bio::AlignIO::Handler::GenericAlignHandler:
file: Bio/AlignIO/Handler/GenericAlignHandler.pm
+ version: '1.007001'
Bio::AlignIO::arp:
file: Bio/AlignIO/arp.pm
+ version: '1.007001'
Bio::AlignIO::bl2seq:
file: Bio/AlignIO/bl2seq.pm
+ version: '1.007001'
Bio::AlignIO::clustalw:
file: Bio/AlignIO/clustalw.pm
+ version: '1.007001'
Bio::AlignIO::emboss:
file: Bio/AlignIO/emboss.pm
+ version: '1.007001'
Bio::AlignIO::fasta:
file: Bio/AlignIO/fasta.pm
+ version: '1.007001'
Bio::AlignIO::largemultifasta:
file: Bio/AlignIO/largemultifasta.pm
+ version: '1.007001'
Bio::AlignIO::maf:
file: Bio/AlignIO/maf.pm
+ version: '1.007001'
Bio::AlignIO::mase:
file: Bio/AlignIO/mase.pm
+ version: '1.007001'
Bio::AlignIO::mega:
file: Bio/AlignIO/mega.pm
+ version: '1.007001'
Bio::AlignIO::meme:
file: Bio/AlignIO/meme.pm
+ version: '1.007001'
Bio::AlignIO::metafasta:
file: Bio/AlignIO/metafasta.pm
+ version: '1.007001'
Bio::AlignIO::msf:
file: Bio/AlignIO/msf.pm
+ version: '1.007001'
Bio::AlignIO::nexml:
file: Bio/AlignIO/nexml.pm
+ version: '1.007001'
Bio::AlignIO::nexus:
file: Bio/AlignIO/nexus.pm
+ version: '1.007001'
Bio::AlignIO::pfam:
file: Bio/AlignIO/pfam.pm
+ version: '1.007001'
Bio::AlignIO::phylip:
file: Bio/AlignIO/phylip.pm
+ version: '1.007001'
Bio::AlignIO::po:
file: Bio/AlignIO/po.pm
+ version: '1.007001'
Bio::AlignIO::proda:
file: Bio/AlignIO/proda.pm
+ version: '1.007001'
Bio::AlignIO::prodom:
file: Bio/AlignIO/prodom.pm
+ version: '1.007001'
Bio::AlignIO::psi:
file: Bio/AlignIO/psi.pm
+ version: '1.007001'
Bio::AlignIO::selex:
file: Bio/AlignIO/selex.pm
+ version: '1.007001'
Bio::AlignIO::stockholm:
file: Bio/AlignIO/stockholm.pm
+ version: '1.007001'
Bio::AlignIO::xmfa:
file: Bio/AlignIO/xmfa.pm
+ version: '1.007001'
Bio::AnalysisI:
file: Bio/AnalysisI.pm
+ version: '1.007001'
Bio::AnalysisI::JobI:
file: Bio/AnalysisI.pm
+ version: '1.007001'
Bio::AnalysisParserI:
file: Bio/AnalysisParserI.pm
+ version: '1.007001'
Bio::AnalysisResultI:
file: Bio/AnalysisResultI.pm
+ version: '1.007001'
Bio::AnnotatableI:
file: Bio/AnnotatableI.pm
+ version: '1.007001'
Bio::Annotation::AnnotationFactory:
file: Bio/Annotation/AnnotationFactory.pm
+ version: '1.007001'
Bio::Annotation::Collection:
file: Bio/Annotation/Collection.pm
+ version: '1.007001'
Bio::Annotation::Comment:
file: Bio/Annotation/Comment.pm
+ version: '1.007001'
Bio::Annotation::DBLink:
file: Bio/Annotation/DBLink.pm
+ version: '1.007001'
Bio::Annotation::OntologyTerm:
file: Bio/Annotation/OntologyTerm.pm
+ version: '1.007001'
Bio::Annotation::Reference:
file: Bio/Annotation/Reference.pm
+ version: '1.007001'
Bio::Annotation::Relation:
file: Bio/Annotation/Relation.pm
+ version: '1.007001'
Bio::Annotation::SimpleValue:
file: Bio/Annotation/SimpleValue.pm
+ version: '1.007001'
Bio::Annotation::StructuredValue:
file: Bio/Annotation/StructuredValue.pm
+ version: '1.007001'
Bio::Annotation::TagTree:
file: Bio/Annotation/TagTree.pm
+ version: '1.007001'
Bio::Annotation::Target:
file: Bio/Annotation/Target.pm
+ version: '1.007001'
Bio::Annotation::Tree:
file: Bio/Annotation/Tree.pm
+ version: '1.007001'
Bio::Annotation::TypeManager:
file: Bio/Annotation/TypeManager.pm
+ version: '1.007001'
Bio::AnnotationCollectionI:
file: Bio/AnnotationCollectionI.pm
+ version: '1.007001'
Bio::AnnotationI:
file: Bio/AnnotationI.pm
+ version: '1.007001'
Bio::Assembly::Contig:
file: Bio/Assembly/Contig.pm
+ version: '1.007001'
Bio::Assembly::ContigAnalysis:
file: Bio/Assembly/ContigAnalysis.pm
+ version: '1.007001'
Bio::Assembly::IO:
file: Bio/Assembly/IO.pm
+ version: '1.007001'
Bio::Assembly::IO::ace:
file: Bio/Assembly/IO/ace.pm
+ version: '1.007001'
Bio::Assembly::IO::bowtie:
file: Bio/Assembly/IO/bowtie.pm
+ version: '1.007001'
Bio::Assembly::IO::maq:
file: Bio/Assembly/IO/maq.pm
+ version: '1.007001'
Bio::Assembly::IO::phrap:
file: Bio/Assembly/IO/phrap.pm
+ version: '1.007001'
Bio::Assembly::IO::sam:
file: Bio/Assembly/IO/sam.pm
+ version: '1.007001'
Bio::Assembly::IO::tigr:
file: Bio/Assembly/IO/tigr.pm
+ version: '1.007001'
Bio::Assembly::Scaffold:
file: Bio/Assembly/Scaffold.pm
+ version: '1.007001'
Bio::Assembly::ScaffoldI:
file: Bio/Assembly/ScaffoldI.pm
+ version: '1.007001'
Bio::Assembly::Singlet:
file: Bio/Assembly/Singlet.pm
+ version: '1.007001'
Bio::Assembly::Tools::ContigSpectrum:
file: Bio/Assembly/Tools/ContigSpectrum.pm
+ version: '1.007001'
Bio::Cluster::ClusterFactory:
file: Bio/Cluster/ClusterFactory.pm
+ version: '1.007001'
Bio::Cluster::FamilyI:
file: Bio/Cluster/FamilyI.pm
+ version: '1.007001'
Bio::Cluster::SequenceFamily:
file: Bio/Cluster/SequenceFamily.pm
+ version: '1.007001'
Bio::Cluster::UniGene:
file: Bio/Cluster/UniGene.pm
+ version: '1.007001'
Bio::Cluster::UniGeneI:
file: Bio/Cluster/UniGeneI.pm
+ version: '1.007001'
Bio::ClusterI:
file: Bio/ClusterI.pm
+ version: '1.007001'
Bio::ClusterIO:
file: Bio/ClusterIO.pm
+ version: '1.007001'
Bio::ClusterIO::dbsnp:
file: Bio/ClusterIO/dbsnp.pm
+ version: '1.007001'
Bio::ClusterIO::unigene:
file: Bio/ClusterIO/unigene.pm
+ version: '1.007001'
Bio::CodonUsage::IO:
file: Bio/CodonUsage/IO.pm
+ version: '1.007001'
Bio::CodonUsage::Table:
file: Bio/CodonUsage/Table.pm
+ version: '1.007001'
Bio::DB::Ace:
file: Bio/DB/Ace.pm
+ version: '1.007001'
Bio::DB::BioFetch:
file: Bio/DB/BioFetch.pm
+ version: '1.007001'
Bio::DB::CUTG:
file: Bio/DB/CUTG.pm
+ version: '1.007001'
Bio::DB::DBFetch:
file: Bio/DB/DBFetch.pm
+ version: '1.007001'
Bio::DB::EMBL:
file: Bio/DB/EMBL.pm
+ version: '1.007001'
Bio::DB::EntrezGene:
file: Bio/DB/EntrezGene.pm
+ version: '1.007001'
Bio::DB::Expression:
file: Bio/DB/Expression.pm
+ version: '1.007001'
Bio::DB::Expression::geo:
file: Bio/DB/Expression/geo.pm
+ version: '1.007001'
Bio::DB::Failover:
file: Bio/DB/Failover.pm
+ version: '1.007001'
Bio::DB::Fasta:
file: Bio/DB/Fasta.pm
+ version: '1.007001'
Bio::DB::Fasta::Subdir:
file: Bio/DB/SeqFeature/Store/berkeleydb.pm
+ version: '1.007001'
Bio::DB::FileCache:
file: Bio/DB/FileCache.pm
+ version: '1.007001'
Bio::DB::Flat:
file: Bio/DB/Flat.pm
+ version: '1.007001'
Bio::DB::Flat::BDB:
file: Bio/DB/Flat/BDB.pm
+ version: '1.007001'
Bio::DB::Flat::BDB::embl:
file: Bio/DB/Flat/BDB/embl.pm
+ version: '1.007001'
Bio::DB::Flat::BDB::fasta:
file: Bio/DB/Flat/BDB/fasta.pm
+ version: '1.007001'
Bio::DB::Flat::BDB::genbank:
file: Bio/DB/Flat/BDB/genbank.pm
+ version: '1.007001'
Bio::DB::Flat::BDB::swiss:
file: Bio/DB/Flat/BDB/swiss.pm
+ version: '1.007001'
Bio::DB::Flat::BinarySearch:
file: Bio/DB/Flat/BinarySearch.pm
+ version: '1.007001'
Bio::DB::GFF:
file: Bio/DB/GFF.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::ace:
file: Bio/DB/GFF/Adaptor/ace.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::berkeleydb:
file: Bio/DB/GFF/Adaptor/berkeleydb.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::berkeleydb::iterator:
file: Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::biofetch:
file: Bio/DB/GFF/Adaptor/biofetch.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::biofetch_oracle:
file: Bio/DB/GFF/Adaptor/biofetch_oracle.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi:
file: Bio/DB/GFF/Adaptor/dbi.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::caching_handle:
file: Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::faux_dbh:
file: Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::iterator:
file: Bio/DB/GFF/Adaptor/dbi/iterator.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::mysql:
file: Bio/DB/GFF/Adaptor/dbi/mysql.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::mysqlace:
file: Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::mysqlcmap:
file: Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::mysqlopt:
file: Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::oracle:
file: Bio/DB/GFF/Adaptor/dbi/oracle.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::oracleace:
file: Bio/DB/GFF/Adaptor/dbi/oracleace.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::pg:
file: Bio/DB/GFF/Adaptor/dbi/pg.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::dbi::pg_fts:
file: Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::memory:
file: Bio/DB/GFF/Adaptor/memory.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::memory::feature_serializer:
file: Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
+ version: '1.007001'
Bio::DB::GFF::Adaptor::memory::iterator:
file: Bio/DB/GFF/Adaptor/memory/iterator.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator:
file: Bio/DB/GFF/Aggregator.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::alignment:
file: Bio/DB/GFF/Aggregator/alignment.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::clone:
file: Bio/DB/GFF/Aggregator/clone.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::coding:
file: Bio/DB/GFF/Aggregator/coding.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::gene:
file: Bio/DB/GFF/Aggregator/gene.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::match:
file: Bio/DB/GFF/Aggregator/match.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::none:
file: Bio/DB/GFF/Aggregator/none.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::orf:
file: Bio/DB/GFF/Aggregator/orf.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::processed_transcript:
file: Bio/DB/GFF/Aggregator/processed_transcript.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::so_transcript:
file: Bio/DB/GFF/Aggregator/so_transcript.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::transcript:
file: Bio/DB/GFF/Aggregator/transcript.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_acembly:
file: Bio/DB/GFF/Aggregator/ucsc_acembly.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_ensgene:
file: Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_genscan:
file: Bio/DB/GFF/Aggregator/ucsc_genscan.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_refgene:
file: Bio/DB/GFF/Aggregator/ucsc_refgene.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_sanger22:
file: Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo:
file: Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_softberry:
file: Bio/DB/GFF/Aggregator/ucsc_softberry.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_twinscan:
file: Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
+ version: '1.007001'
Bio::DB::GFF::Aggregator::ucsc_unigene:
file: Bio/DB/GFF/Aggregator/ucsc_unigene.pm
+ version: '1.007001'
Bio::DB::GFF::Featname:
file: Bio/DB/GFF/Featname.pm
+ version: '1.007001'
Bio::DB::GFF::Feature:
file: Bio/DB/GFF/Feature.pm
+ version: '1.007001'
Bio::DB::GFF::FeatureIterator:
file: Bio/DB/GFF.pm
+ version: '1.007001'
Bio::DB::GFF::Homol:
file: Bio/DB/GFF/Homol.pm
+ version: '1.007001'
Bio::DB::GFF::ID_Iterator:
file: Bio/DB/GFF.pm
+ version: '1.007001'
Bio::DB::GFF::RelSegment:
file: Bio/DB/GFF/RelSegment.pm
+ version: '1.007001'
Bio::DB::GFF::Segment:
file: Bio/DB/GFF/Segment.pm
+ version: '1.007001'
Bio::DB::GFF::Typename:
file: Bio/DB/GFF/Typename.pm
+ version: '1.007001'
Bio::DB::GFF::Util::Binning:
file: Bio/DB/GFF/Util/Binning.pm
+ version: '1.007001'
Bio::DB::GFF::Util::Rearrange:
file: Bio/DB/GFF/Util/Rearrange.pm
+ version: '1.007001'
Bio::DB::GenBank:
file: Bio/DB/GenBank.pm
+ version: '1.007001'
Bio::DB::GenPept:
file: Bio/DB/GenPept.pm
+ version: '1.007001'
Bio::DB::GenericWebAgent:
file: Bio/DB/GenericWebAgent.pm
+ version: '1.007001'
Bio::DB::HIV:
file: Bio/DB/HIV.pm
+ version: '1.007001'
Bio::DB::HIV::HIVAnnotProcessor:
file: Bio/DB/HIV/HIVAnnotProcessor.pm
+ version: '1.007001'
Bio::DB::HIV::HIVQueryHelper:
file: Bio/DB/HIV/HIVQueryHelper.pm
+ version: '1.007001'
Bio::DB::InMemoryCache:
file: Bio/DB/InMemoryCache.pm
+ version: '1.007001'
Bio::DB::Indexed::Stream:
file: Bio/DB/IndexedBase.pm
+ version: '1.007001'
Bio::DB::IndexedBase:
file: Bio/DB/IndexedBase.pm
+ version: '1.007001'
Bio::DB::LocationI:
file: Bio/DB/LocationI.pm
+ version: '1.007001'
Bio::DB::MeSH:
file: Bio/DB/MeSH.pm
+ version: '1.007001'
Bio::DB::NCBIHelper:
file: Bio/DB/NCBIHelper.pm
+ version: '1.007001'
Bio::DB::Qual:
file: Bio/DB/Qual.pm
+ version: '1.007001'
Bio::DB::Query::GenBank:
file: Bio/DB/Query/GenBank.pm
+ version: '1.007001'
Bio::DB::Query::HIVQuery:
file: Bio/DB/Query/HIVQuery.pm
+ version: '1.007001'
Bio::DB::Query::WebQuery:
file: Bio/DB/Query/WebQuery.pm
+ version: '1.007001'
Bio::DB::QueryI:
file: Bio/DB/QueryI.pm
+ version: '1.007001'
Bio::DB::RandomAccessI:
file: Bio/DB/RandomAccessI.pm
+ version: '1.007001'
Bio::DB::RefSeq:
file: Bio/DB/RefSeq.pm
+ version: '1.007001'
Bio::DB::ReferenceI:
file: Bio/DB/ReferenceI.pm
+ version: '1.007001'
Bio::DB::Registry:
file: Bio/DB/Registry.pm
+ version: '1.007001'
Bio::DB::SeqFeature:
file: Bio/DB/SeqFeature.pm
+ version: '1.007001'
Bio::DB::SeqFeature::NormalizedFeature:
file: Bio/DB/SeqFeature/NormalizedFeature.pm
+ version: '1.007001'
Bio::DB::SeqFeature::NormalizedFeatureI:
file: Bio/DB/SeqFeature/NormalizedFeatureI.pm
+ version: '1.007001'
Bio::DB::SeqFeature::NormalizedTableFeatureI:
file: Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Segment:
file: Bio/DB/SeqFeature/Segment.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store:
file: Bio/DB/SeqFeature/Store.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::DBI::Iterator:
file: Bio/DB/SeqFeature/Store/DBI/Iterator.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::DBI::Pg:
file: Bio/DB/SeqFeature/Store/DBI/Pg.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::DBI::SQLite:
file: Bio/DB/SeqFeature/Store/DBI/SQLite.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::DBI::mysql:
file: Bio/DB/SeqFeature/Store/DBI/mysql.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::FeatureFileLoader:
file: Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::FeatureIterator:
file: Bio/DB/SeqFeature/Store.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::GFF2Loader:
file: Bio/DB/SeqFeature/Store/GFF2Loader.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::GFF3Loader:
file: Bio/DB/SeqFeature/Store/GFF3Loader.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::LoadHelper:
file: Bio/DB/SeqFeature/Store/LoadHelper.pm
- version: '1.11'
+ version: '1.12'
Bio::DB::SeqFeature::Store::Loader:
file: Bio/DB/SeqFeature/Store/Loader.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::bdb:
file: Bio/DB/SeqFeature/Store/bdb.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::berkeleydb:
file: Bio/DB/SeqFeature/Store/berkeleydb.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::berkeleydb3:
file: Bio/DB/SeqFeature/Store/berkeleydb3.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::berkeleydb::Iterator:
file: Bio/DB/SeqFeature/Store/berkeleydb.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::memory:
file: Bio/DB/SeqFeature/Store/memory.pm
+ version: '1.007001'
Bio::DB::SeqFeature::Store::memory::Iterator:
file: Bio/DB/SeqFeature/Store/memory.pm
+ version: '1.007001'
Bio::DB::SeqI:
file: Bio/DB/SeqI.pm
+ version: '1.007001'
Bio::DB::SeqVersion:
file: Bio/DB/SeqVersion.pm
+ version: '1.007001'
Bio::DB::SeqVersion::gi:
file: Bio/DB/SeqVersion/gi.pm
+ version: '1.007001'
Bio::DB::SwissProt:
file: Bio/DB/SwissProt.pm
+ version: '1.007001'
Bio::DB::TFBS:
file: Bio/DB/TFBS.pm
+ version: '1.007001'
Bio::DB::TFBS::transfac_pro:
file: Bio/DB/TFBS/transfac_pro.pm
+ version: '1.007001'
Bio::DB::Taxonomy:
file: Bio/DB/Taxonomy.pm
+ version: '1.007001'
Bio::DB::Taxonomy::entrez:
file: Bio/DB/Taxonomy/entrez.pm
+ version: '1.007001'
Bio::DB::Taxonomy::flatfile:
file: Bio/DB/Taxonomy/flatfile.pm
+ version: '1.007001'
Bio::DB::Taxonomy::greengenes:
file: Bio/DB/Taxonomy/greengenes.pm
+ version: '1.007001'
Bio::DB::Taxonomy::list:
file: Bio/DB/Taxonomy/list.pm
+ version: '1.007001'
Bio::DB::Taxonomy::silva:
file: Bio/DB/Taxonomy/silva.pm
+ version: '1.007001'
Bio::DB::Taxonomy::sqlite:
file: Bio/DB/Taxonomy/sqlite.pm
+ version: '1.007001'
Bio::DB::Universal:
file: Bio/DB/Universal.pm
+ version: '1.007001'
Bio::DB::UpdateableSeqI:
file: Bio/DB/UpdateableSeqI.pm
+ version: '1.007001'
Bio::DB::WebDBSeqI:
file: Bio/DB/WebDBSeqI.pm
+ version: '1.007001'
Bio::DBLinkContainerI:
file: Bio/DBLinkContainerI.pm
+ version: '1.007001'
Bio::Das::FeatureTypeI:
file: Bio/Das/FeatureTypeI.pm
+ version: '1.007001'
Bio::Das::SegmentI:
file: Bio/Das/SegmentI.pm
+ version: '1.007001'
Bio::DasI:
file: Bio/DasI.pm
+ version: '1.007001'
Bio::DescribableI:
file: Bio/DescribableI.pm
+ version: '1.007001'
Bio::Draw::Pictogram:
file: Bio/Draw/Pictogram.pm
+ version: '1.007001'
Bio::Event::EventGeneratorI:
file: Bio/Event/EventGeneratorI.pm
+ version: '1.007001'
Bio::Event::EventHandlerI:
file: Bio/Event/EventHandlerI.pm
+ version: '1.007001'
Bio::Factory::AnalysisI:
file: Bio/Factory/AnalysisI.pm
+ version: '1.007001'
Bio::Factory::ApplicationFactoryI:
file: Bio/Factory/ApplicationFactoryI.pm
+ version: '1.007001'
Bio::Factory::DriverFactory:
file: Bio/Factory/DriverFactory.pm
+ version: '1.007001'
Bio::Factory::FTLocationFactory:
file: Bio/Factory/FTLocationFactory.pm
+ version: '1.007001'
Bio::Factory::LocationFactoryI:
file: Bio/Factory/LocationFactoryI.pm
+ version: '1.007001'
Bio::Factory::MapFactoryI:
file: Bio/Factory/MapFactoryI.pm
+ version: '1.007001'
Bio::Factory::ObjectBuilderI:
file: Bio/Factory/ObjectBuilderI.pm
+ version: '1.007001'
Bio::Factory::ObjectFactory:
file: Bio/Factory/ObjectFactory.pm
+ version: '1.007001'
Bio::Factory::ObjectFactoryI:
file: Bio/Factory/ObjectFactoryI.pm
+ version: '1.007001'
Bio::Factory::SeqAnalysisParserFactory:
file: Bio/Factory/SeqAnalysisParserFactory.pm
+ version: '1.007001'
Bio::Factory::SeqAnalysisParserFactoryI:
file: Bio/Factory/SeqAnalysisParserFactoryI.pm
+ version: '1.007001'
Bio::Factory::SequenceFactoryI:
file: Bio/Factory/SequenceFactoryI.pm
+ version: '1.007001'
Bio::Factory::SequenceProcessorI:
file: Bio/Factory/SequenceProcessorI.pm
+ version: '1.007001'
Bio::Factory::SequenceStreamI:
file: Bio/Factory/SequenceStreamI.pm
+ version: '1.007001'
Bio::Factory::TreeFactoryI:
file: Bio/Factory/TreeFactoryI.pm
+ version: '1.007001'
Bio::FeatureHolderI:
file: Bio/FeatureHolderI.pm
+ version: '1.007001'
Bio::HandlerBaseI:
file: Bio/HandlerBaseI.pm
+ version: '1.007001'
Bio::IdCollectionI:
file: Bio/IdCollectionI.pm
+ version: '1.007001'
Bio::IdentifiableI:
file: Bio/IdentifiableI.pm
+ version: '1.007001'
Bio::Index::Abstract:
file: Bio/Index/Abstract.pm
+ version: '1.007001'
Bio::Index::AbstractSeq:
file: Bio/Index/AbstractSeq.pm
+ version: '1.007001'
Bio::Index::Blast:
file: Bio/Index/Blast.pm
+ version: '1.007001'
Bio::Index::BlastTable:
file: Bio/Index/BlastTable.pm
+ version: '1.007001'
Bio::Index::EMBL:
file: Bio/Index/EMBL.pm
+ version: '1.007001'
Bio::Index::Fasta:
file: Bio/Index/Fasta.pm
+ version: '1.007001'
Bio::Index::Fastq:
file: Bio/Index/Fastq.pm
+ version: '1.007001'
Bio::Index::GenBank:
file: Bio/Index/GenBank.pm
+ version: '1.007001'
Bio::Index::Hmmer:
file: Bio/Index/Hmmer.pm
+ version: '1.007001'
Bio::Index::Qual:
file: Bio/Index/Qual.pm
+ version: '1.007001'
Bio::Index::Stockholm:
file: Bio/Index/Stockholm.pm
+ version: '1.007001'
Bio::Index::SwissPfam:
file: Bio/Index/SwissPfam.pm
+ version: '1.007001'
Bio::Index::Swissprot:
file: Bio/Index/Swissprot.pm
+ version: '1.007001'
Bio::LiveSeq::AARange:
file: Bio/LiveSeq/AARange.pm
+ version: '1.007001'
Bio::LiveSeq::Chain:
file: Bio/LiveSeq/Chain.pm
+ version: '1.007001'
Bio::LiveSeq::ChainI:
file: Bio/LiveSeq/ChainI.pm
+ version: '1.007001'
Bio::LiveSeq::DNA:
file: Bio/LiveSeq/DNA.pm
+ version: '1.007001'
Bio::LiveSeq::Exon:
file: Bio/LiveSeq/Exon.pm
+ version: '1.007001'
Bio::LiveSeq::Gene:
file: Bio/LiveSeq/Gene.pm
+ version: '1.007001'
Bio::LiveSeq::IO::BioPerl:
file: Bio/LiveSeq/IO/BioPerl.pm
+ version: '1.007001'
Bio::LiveSeq::IO::Loader:
file: Bio/LiveSeq/IO/Loader.pm
+ version: '1.007001'
Bio::LiveSeq::Intron:
file: Bio/LiveSeq/Intron.pm
+ version: '1.007001'
Bio::LiveSeq::Mutation:
file: Bio/LiveSeq/Mutation.pm
+ version: '1.007001'
Bio::LiveSeq::Mutator:
file: Bio/LiveSeq/Mutator.pm
+ version: '1.007001'
Bio::LiveSeq::Prim_Transcript:
file: Bio/LiveSeq/Prim_Transcript.pm
+ version: '1.007001'
Bio::LiveSeq::Range:
file: Bio/LiveSeq/Range.pm
+ version: '1.007001'
Bio::LiveSeq::Repeat_Region:
file: Bio/LiveSeq/Repeat_Region.pm
+ version: '1.007001'
Bio::LiveSeq::Repeat_Unit:
file: Bio/LiveSeq/Repeat_Unit.pm
+ version: '1.007001'
Bio::LiveSeq::SeqI:
file: Bio/LiveSeq/SeqI.pm
+ version: '1.007001'
Bio::LiveSeq::Transcript:
file: Bio/LiveSeq/Transcript.pm
+ version: '1.007001'
Bio::LiveSeq::Translation:
file: Bio/LiveSeq/Translation.pm
+ version: '1.007001'
Bio::LocatableSeq:
file: Bio/LocatableSeq.pm
+ version: '1.007001'
Bio::Location::Atomic:
file: Bio/Location/Atomic.pm
+ version: '1.007001'
Bio::Location::AvWithinCoordPolicy:
file: Bio/Location/AvWithinCoordPolicy.pm
+ version: '1.007001'
Bio::Location::CoordinatePolicyI:
file: Bio/Location/CoordinatePolicyI.pm
+ version: '1.007001'
Bio::Location::Fuzzy:
file: Bio/Location/Fuzzy.pm
+ version: '1.007001'
Bio::Location::FuzzyLocationI:
file: Bio/Location/FuzzyLocationI.pm
+ version: '1.007001'
Bio::Location::NarrowestCoordPolicy:
file: Bio/Location/NarrowestCoordPolicy.pm
+ version: '1.007001'
Bio::Location::Simple:
file: Bio/Location/Simple.pm
+ version: '1.007001'
Bio::Location::Split:
file: Bio/Location/Split.pm
+ version: '1.007001'
Bio::Location::SplitLocationI:
file: Bio/Location/SplitLocationI.pm
+ version: '1.007001'
Bio::Location::WidestCoordPolicy:
file: Bio/Location/WidestCoordPolicy.pm
+ version: '1.007001'
Bio::LocationI:
file: Bio/LocationI.pm
+ version: '1.007001'
Bio::Map::Clone:
file: Bio/Map/Clone.pm
+ version: '1.007001'
Bio::Map::Contig:
file: Bio/Map/Contig.pm
+ version: '1.007001'
Bio::Map::CytoMap:
file: Bio/Map/CytoMap.pm
+ version: '1.007001'
Bio::Map::CytoMarker:
file: Bio/Map/CytoMarker.pm
+ version: '1.007001'
Bio::Map::CytoPosition:
file: Bio/Map/CytoPosition.pm
+ version: '1.007001'
Bio::Map::EntityI:
file: Bio/Map/EntityI.pm
+ version: '1.007001'
Bio::Map::FPCMarker:
file: Bio/Map/FPCMarker.pm
+ version: '1.007001'
Bio::Map::Gene:
file: Bio/Map/Gene.pm
+ version: '1.007001'
Bio::Map::GeneMap:
file: Bio/Map/GeneMap.pm
+ version: '1.007001'
Bio::Map::GenePosition:
file: Bio/Map/GenePosition.pm
+ version: '1.007001'
Bio::Map::GeneRelative:
file: Bio/Map/GeneRelative.pm
+ version: '1.007001'
Bio::Map::LinkageMap:
file: Bio/Map/LinkageMap.pm
+ version: '1.007001'
Bio::Map::LinkagePosition:
file: Bio/Map/LinkagePosition.pm
+ version: '1.007001'
Bio::Map::MapI:
file: Bio/Map/MapI.pm
+ version: '1.007001'
Bio::Map::Mappable:
file: Bio/Map/Mappable.pm
+ version: '1.007001'
Bio::Map::MappableI:
file: Bio/Map/MappableI.pm
+ version: '1.007001'
Bio::Map::Marker:
file: Bio/Map/Marker.pm
+ version: '1.007001'
Bio::Map::MarkerI:
file: Bio/Map/MarkerI.pm
+ version: '1.007001'
Bio::Map::Microsatellite:
file: Bio/Map/Microsatellite.pm
+ version: '1.007001'
Bio::Map::OrderedPosition:
file: Bio/Map/OrderedPosition.pm
+ version: '1.007001'
Bio::Map::OrderedPositionWithDistance:
file: Bio/Map/OrderedPositionWithDistance.pm
+ version: '1.007001'
Bio::Map::Physical:
file: Bio/Map/Physical.pm
+ version: '1.007001'
Bio::Map::Position:
file: Bio/Map/Position.pm
+ version: '1.007001'
Bio::Map::PositionHandler:
file: Bio/Map/PositionHandler.pm
+ version: '1.007001'
Bio::Map::PositionHandlerI:
file: Bio/Map/PositionHandlerI.pm
+ version: '1.007001'
Bio::Map::PositionI:
file: Bio/Map/PositionI.pm
+ version: '1.007001'
Bio::Map::PositionWithSequence:
file: Bio/Map/PositionWithSequence.pm
+ version: '1.007001'
Bio::Map::Prediction:
file: Bio/Map/Prediction.pm
+ version: '1.007001'
Bio::Map::Relative:
file: Bio/Map/Relative.pm
+ version: '1.007001'
Bio::Map::RelativeI:
file: Bio/Map/RelativeI.pm
+ version: '1.007001'
Bio::Map::SimpleMap:
file: Bio/Map/SimpleMap.pm
+ version: '1.007001'
Bio::Map::TranscriptionFactor:
file: Bio/Map/TranscriptionFactor.pm
+ version: '1.007001'
Bio::MapIO:
file: Bio/MapIO.pm
+ version: '1.007001'
Bio::MapIO::fpc:
file: Bio/MapIO/fpc.pm
+ version: '1.007001'
Bio::MapIO::mapmaker:
file: Bio/MapIO/mapmaker.pm
+ version: '1.007001'
Bio::Matrix::Generic:
file: Bio/Matrix/Generic.pm
+ version: '1.007001'
Bio::Matrix::IO:
file: Bio/Matrix/IO.pm
+ version: '1.007001'
Bio::Matrix::IO::mlagan:
file: Bio/Matrix/IO/mlagan.pm
+ version: '1.007001'
Bio::Matrix::IO::phylip:
file: Bio/Matrix/IO/phylip.pm
+ version: '1.007001'
Bio::Matrix::IO::scoring:
file: Bio/Matrix/IO/scoring.pm
+ version: '1.007001'
Bio::Matrix::MatrixI:
file: Bio/Matrix/MatrixI.pm
+ version: '1.007001'
Bio::Matrix::Mlagan:
file: Bio/Matrix/Mlagan.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO:
file: Bio/Matrix/PSM/IO.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO::mast:
file: Bio/Matrix/PSM/IO/mast.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO::masta:
file: Bio/Matrix/PSM/IO/masta.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO::meme:
file: Bio/Matrix/PSM/IO/meme.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO::psiblast:
file: Bio/Matrix/PSM/IO/psiblast.pm
+ version: '1.007001'
Bio::Matrix::PSM::IO::transfac:
file: Bio/Matrix/PSM/IO/transfac.pm
+ version: '1.007001'
Bio::Matrix::PSM::InstanceSite:
file: Bio/Matrix/PSM/InstanceSite.pm
+ version: '1.007001'
Bio::Matrix::PSM::InstanceSiteI:
file: Bio/Matrix/PSM/InstanceSiteI.pm
+ version: '1.007001'
Bio::Matrix::PSM::ProtMatrix:
file: Bio/Matrix/PSM/ProtMatrix.pm
+ version: '1.007001'
Bio::Matrix::PSM::ProtPsm:
file: Bio/Matrix/PSM/ProtPsm.pm
+ version: '1.007001'
Bio::Matrix::PSM::Psm:
file: Bio/Matrix/PSM/Psm.pm
+ version: '1.007001'
Bio::Matrix::PSM::PsmHeader:
file: Bio/Matrix/PSM/PsmHeader.pm
+ version: '1.007001'
Bio::Matrix::PSM::PsmHeaderI:
file: Bio/Matrix/PSM/PsmHeaderI.pm
+ version: '1.007001'
Bio::Matrix::PSM::PsmI:
file: Bio/Matrix/PSM/PsmI.pm
+ version: '1.007001'
Bio::Matrix::PSM::SiteMatrix:
file: Bio/Matrix/PSM/SiteMatrix.pm
+ version: '1.007001'
Bio::Matrix::PSM::SiteMatrixI:
file: Bio/Matrix/PSM/SiteMatrixI.pm
+ version: '1.007001'
Bio::Matrix::PhylipDist:
file: Bio/Matrix/PhylipDist.pm
+ version: '1.007001'
Bio::Matrix::Scoring:
file: Bio/Matrix/Scoring.pm
+ version: '1.007001'
Bio::MolEvol::CodonModel:
file: Bio/MolEvol/CodonModel.pm
+ version: '1.007001'
Bio::Nexml::Factory:
file: Bio/Nexml/Factory.pm
+ version: '1.007001'
Bio::NexmlIO:
file: Bio/NexmlIO.pm
+ version: '1.007001'
Bio::Ontology::DocumentRegistry:
file: Bio/Ontology/DocumentRegistry.pm
+ version: '1.007001'
Bio::Ontology::GOterm:
file: Bio/Ontology/GOterm.pm
+ version: '1.007001'
Bio::Ontology::InterProTerm:
file: Bio/Ontology/InterProTerm.pm
+ version: '1.007001'
Bio::Ontology::OBOEngine:
file: Bio/Ontology/OBOEngine.pm
+ version: '1.007001'
Bio::Ontology::OBOterm:
file: Bio/Ontology/OBOterm.pm
+ version: '1.007001'
Bio::Ontology::Ontology:
file: Bio/Ontology/Ontology.pm
+ version: '1.007001'
Bio::Ontology::OntologyEngineI:
file: Bio/Ontology/OntologyEngineI.pm
+ version: '1.007001'
Bio::Ontology::OntologyI:
file: Bio/Ontology/OntologyI.pm
+ version: '1.007001'
Bio::Ontology::OntologyStore:
file: Bio/Ontology/OntologyStore.pm
+ version: '1.007001'
Bio::Ontology::Path:
file: Bio/Ontology/Path.pm
+ version: '1.007001'
Bio::Ontology::PathI:
file: Bio/Ontology/PathI.pm
+ version: '1.007001'
Bio::Ontology::Relationship:
file: Bio/Ontology/Relationship.pm
+ version: '1.007001'
Bio::Ontology::RelationshipFactory:
file: Bio/Ontology/RelationshipFactory.pm
+ version: '1.007001'
Bio::Ontology::RelationshipI:
file: Bio/Ontology/RelationshipI.pm
+ version: '1.007001'
Bio::Ontology::RelationshipType:
file: Bio/Ontology/RelationshipType.pm
+ version: '1.007001'
Bio::Ontology::SimpleGOEngine::GraphAdaptor:
file: Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
+ version: '1.007001'
Bio::Ontology::SimpleOntologyEngine:
file: Bio/Ontology/SimpleOntologyEngine.pm
+ version: '1.007001'
Bio::Ontology::Term:
file: Bio/Ontology/Term.pm
+ version: '1.007001'
Bio::Ontology::TermFactory:
file: Bio/Ontology/TermFactory.pm
+ version: '1.007001'
Bio::Ontology::TermI:
file: Bio/Ontology/TermI.pm
+ version: '1.007001'
Bio::OntologyIO:
file: Bio/OntologyIO.pm
+ version: '1.007001'
Bio::OntologyIO::Handlers::BaseSAXHandler:
file: Bio/OntologyIO/Handlers/BaseSAXHandler.pm
+ version: '1.007001'
Bio::OntologyIO::Handlers::InterProHandler:
file: Bio/OntologyIO/Handlers/InterProHandler.pm
+ version: '1.007001'
Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler:
file: Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
+ version: '1.007001'
Bio::OntologyIO::InterProParser:
file: Bio/OntologyIO/InterProParser.pm
+ version: '1.007001'
Bio::OntologyIO::dagflat:
file: Bio/OntologyIO/dagflat.pm
+ version: '1.007001'
Bio::OntologyIO::goflat:
file: Bio/OntologyIO/goflat.pm
+ version: '1.007001'
Bio::OntologyIO::obo:
file: Bio/OntologyIO/obo.pm
+ version: '1.007001'
Bio::OntologyIO::simplehierarchy:
file: Bio/OntologyIO/simplehierarchy.pm
+ version: '1.007001'
Bio::OntologyIO::soflat:
file: Bio/OntologyIO/soflat.pm
+ version: '1.007001'
Bio::ParameterBaseI:
file: Bio/ParameterBaseI.pm
+ version: '1.007001'
Bio::Perl:
file: Bio/Perl.pm
+ version: '1.007001'
Bio::Phenotype::Correlate:
file: Bio/Phenotype/Correlate.pm
+ version: '1.007001'
Bio::Phenotype::MeSH::Term:
file: Bio/Phenotype/MeSH/Term.pm
+ version: '1.007001'
Bio::Phenotype::MeSH::Twig:
file: Bio/Phenotype/MeSH/Twig.pm
+ version: '1.007001'
Bio::Phenotype::Measure:
file: Bio/Phenotype/Measure.pm
+ version: '1.007001'
Bio::Phenotype::OMIM::MiniMIMentry:
file: Bio/Phenotype/OMIM/MiniMIMentry.pm
+ version: '1.007001'
Bio::Phenotype::OMIM::OMIMentry:
file: Bio/Phenotype/OMIM/OMIMentry.pm
+ version: '1.007001'
Bio::Phenotype::OMIM::OMIMentryAllelicVariant:
file: Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm
+ version: '1.007001'
Bio::Phenotype::OMIM::OMIMparser:
file: Bio/Phenotype/OMIM/OMIMparser.pm
+ version: '1.007001'
Bio::Phenotype::Phenotype:
file: Bio/Phenotype/Phenotype.pm
+ version: '1.007001'
Bio::Phenotype::PhenotypeI:
file: Bio/Phenotype/PhenotypeI.pm
+ version: '1.007001'
Bio::PhyloNetwork:
file: Bio/PhyloNetwork.pm
+ version: '1.007001'
Bio::PhyloNetwork::Factory:
file: Bio/PhyloNetwork/Factory.pm
+ version: '1.007001'
Bio::PhyloNetwork::FactoryX:
file: Bio/PhyloNetwork/FactoryX.pm
+ version: '1.007001'
Bio::PhyloNetwork::GraphViz:
file: Bio/PhyloNetwork/GraphViz.pm
+ version: '1.007001'
Bio::PhyloNetwork::RandomFactory:
file: Bio/PhyloNetwork/RandomFactory.pm
+ version: '1.007001'
Bio::PhyloNetwork::TreeFactory:
file: Bio/PhyloNetwork/TreeFactory.pm
+ version: '1.007001'
Bio::PhyloNetwork::TreeFactoryMulti:
file: Bio/PhyloNetwork/TreeFactoryMulti.pm
+ version: '1.007001'
Bio::PhyloNetwork::TreeFactoryX:
file: Bio/PhyloNetwork/TreeFactoryX.pm
+ version: '1.007001'
Bio::PhyloNetwork::muVector:
file: Bio/PhyloNetwork/muVector.pm
+ version: '1.007001'
Bio::PopGen::Genotype:
file: Bio/PopGen/Genotype.pm
+ version: '1.007001'
Bio::PopGen::GenotypeI:
file: Bio/PopGen/GenotypeI.pm
+ version: '1.007001'
Bio::PopGen::HtSNP:
file: Bio/PopGen/HtSNP.pm
+ version: '1.007001'
Bio::PopGen::IO:
file: Bio/PopGen/IO.pm
+ version: '1.007001'
Bio::PopGen::IO::csv:
file: Bio/PopGen/IO/csv.pm
+ version: '1.007001'
Bio::PopGen::IO::hapmap:
file: Bio/PopGen/IO/hapmap.pm
+ version: '1.007001'
Bio::PopGen::IO::phase:
file: Bio/PopGen/IO/phase.pm
+ version: '1.007001'
Bio::PopGen::IO::prettybase:
file: Bio/PopGen/IO/prettybase.pm
+ version: '1.007001'
Bio::PopGen::Individual:
file: Bio/PopGen/Individual.pm
+ version: '1.007001'
Bio::PopGen::IndividualI:
file: Bio/PopGen/IndividualI.pm
+ version: '1.007001'
Bio::PopGen::Marker:
file: Bio/PopGen/Marker.pm
+ version: '1.007001'
Bio::PopGen::MarkerI:
file: Bio/PopGen/MarkerI.pm
+ version: '1.007001'
Bio::PopGen::PopStats:
file: Bio/PopGen/PopStats.pm
+ version: '1.007001'
Bio::PopGen::Population:
file: Bio/PopGen/Population.pm
+ version: '1.007001'
Bio::PopGen::PopulationI:
file: Bio/PopGen/PopulationI.pm
+ version: '1.007001'
Bio::PopGen::Simulation::Coalescent:
file: Bio/PopGen/Simulation/Coalescent.pm
+ version: '1.007001'
Bio::PopGen::Simulation::GeneticDrift:
file: Bio/PopGen/Simulation/GeneticDrift.pm
+ version: '1.007001'
Bio::PopGen::Statistics:
file: Bio/PopGen/Statistics.pm
+ version: '1.007001'
Bio::PopGen::TagHaplotype:
file: Bio/PopGen/TagHaplotype.pm
+ version: '1.007001'
Bio::PopGen::Utilities:
file: Bio/PopGen/Utilities.pm
+ version: '1.007001'
Bio::PrimarySeq:
file: Bio/PrimarySeq.pm
+ version: '1.007001'
Bio::PrimarySeq::Fasta:
file: Bio/DB/Fasta.pm
+ version: '1.007001'
Bio::PrimarySeqI:
file: Bio/PrimarySeqI.pm
+ version: '1.007001'
Bio::PullParserI:
file: Bio/PullParserI.pm
+ version: '1.007001'
Bio::Range:
file: Bio/Range.pm
+ version: '1.007001'
Bio::RangeI:
file: Bio/RangeI.pm
+ version: '1.007001'
Bio::Restriction::Analysis:
file: Bio/Restriction/Analysis.pm
+ version: '1.007001'
Bio::Restriction::Enzyme:
file: Bio/Restriction/Enzyme.pm
+ version: '1.007001'
Bio::Restriction::Enzyme::MultiCut:
file: Bio/Restriction/Enzyme/MultiCut.pm
+ version: '1.007001'
Bio::Restriction::Enzyme::MultiSite:
file: Bio/Restriction/Enzyme/MultiSite.pm
+ version: '1.007001'
Bio::Restriction::EnzymeCollection:
file: Bio/Restriction/EnzymeCollection.pm
+ version: '1.007001'
Bio::Restriction::EnzymeI:
file: Bio/Restriction/EnzymeI.pm
+ version: '1.007001'
Bio::Restriction::IO:
file: Bio/Restriction/IO.pm
+ version: '1.007001'
Bio::Restriction::IO::bairoch:
file: Bio/Restriction/IO/bairoch.pm
+ version: '1.007001'
Bio::Restriction::IO::base:
file: Bio/Restriction/IO/base.pm
+ version: '1.007001'
Bio::Restriction::IO::itype2:
file: Bio/Restriction/IO/itype2.pm
+ version: '1.007001'
Bio::Restriction::IO::prototype:
file: Bio/Restriction/IO/prototype.pm
+ version: '1.007001'
Bio::Restriction::IO::withrefm:
file: Bio/Restriction/IO/withrefm.pm
+ version: '1.007001'
Bio::Root::Build:
file: Bio/Root/Build.pm
- version: '1.007000'
+ version: '1.007001'
Bio::Root::Exception:
file: Bio/Root/Exception.pm
+ version: '1.007001'
Bio::Root::HTTPget:
file: Bio/Root/HTTPget.pm
+ version: '1.007001'
Bio::Root::IO:
file: Bio/Root/IO.pm
+ version: '1.007001'
Bio::Root::Root:
file: Bio/Root/Root.pm
+ version: '1.007001'
Bio::Root::RootI:
file: Bio/Root/RootI.pm
+ version: '1.007001'
Bio::Root::Storable:
file: Bio/Root/Storable.pm
+ version: '1.007001'
Bio::Root::Test:
file: Bio/Root/Test.pm
+ version: '1.007001'
Bio::Root::TestObject:
file: Bio/Root/TestObject.pm
+ version: '1.007001'
Bio::Root::Utilities:
file: Bio/Root/Utilities.pm
+ version: '1.007001'
Bio::Root::Version:
file: Bio/Root/Version.pm
- version: '1.007000'
+ version: '1.007001'
Bio::Search::BlastStatistics:
file: Bio/Search/BlastStatistics.pm
+ version: '1.007001'
Bio::Search::BlastUtils:
file: Bio/Search/BlastUtils.pm
+ version: '1.007001'
Bio::Search::DatabaseI:
file: Bio/Search/DatabaseI.pm
+ version: '1.007001'
Bio::Search::GenericDatabase:
file: Bio/Search/GenericDatabase.pm
+ version: '1.007001'
Bio::Search::GenericStatistics:
file: Bio/Search/GenericStatistics.pm
+ version: '1.007001'
Bio::Search::HSP::BlastHSP:
file: Bio/Search/HSP/BlastHSP.pm
+ version: '1.007001'
Bio::Search::HSP::BlastPullHSP:
file: Bio/Search/HSP/BlastPullHSP.pm
+ version: '1.007001'
Bio::Search::HSP::FastaHSP:
file: Bio/Search/HSP/FastaHSP.pm
+ version: '1.007001'
Bio::Search::HSP::GenericHSP:
file: Bio/Search/HSP/GenericHSP.pm
+ version: '1.007001'
Bio::Search::HSP::HMMERHSP:
file: Bio/Search/HSP/HMMERHSP.pm
+ version: '1.007001'
Bio::Search::HSP::HSPFactory:
file: Bio/Search/HSP/HSPFactory.pm
+ version: '1.007001'
Bio::Search::HSP::HSPI:
- file: Bio/Search/HSP/HSPI.pm
+ file: Bio/Search/Tiling/MapTileUtils.pm
+ version: '1.007001'
Bio::Search::HSP::HmmpfamHSP:
file: Bio/Search/HSP/HmmpfamHSP.pm
+ version: '1.007001'
Bio::Search::HSP::ModelHSP:
file: Bio/Search/HSP/ModelHSP.pm
+ version: '1.007001'
Bio::Search::HSP::PSLHSP:
file: Bio/Search/HSP/PSLHSP.pm
+ version: '1.007001'
Bio::Search::HSP::PsiBlastHSP:
file: Bio/Search/HSP/PsiBlastHSP.pm
+ version: '1.007001'
Bio::Search::HSP::PullHSPI:
file: Bio/Search/HSP/PullHSPI.pm
+ version: '1.007001'
Bio::Search::HSP::WABAHSP:
file: Bio/Search/HSP/WABAHSP.pm
+ version: '1.007001'
Bio::Search::Hit::BlastHit:
file: Bio/Search/Hit/BlastHit.pm
+ version: '1.007001'
Bio::Search::Hit::BlastPullHit:
file: Bio/Search/Hit/BlastPullHit.pm
+ version: '1.007001'
Bio::Search::Hit::Fasta:
file: Bio/Search/Hit/Fasta.pm
+ version: '1.007001'
Bio::Search::Hit::GenericHit:
file: Bio/Search/Hit/GenericHit.pm
+ version: '1.007001'
Bio::Search::Hit::HMMERHit:
file: Bio/Search/Hit/HMMERHit.pm
+ version: '1.007001'
Bio::Search::Hit::HitFactory:
file: Bio/Search/Hit/HitFactory.pm
+ version: '1.007001'
Bio::Search::Hit::HitI:
file: Bio/Search/Hit/HitI.pm
+ version: '1.007001'
Bio::Search::Hit::HmmpfamHit:
file: Bio/Search/Hit/HmmpfamHit.pm
+ version: '1.007001'
Bio::Search::Hit::ModelHit:
file: Bio/Search/Hit/ModelHit.pm
+ version: '1.007001'
Bio::Search::Hit::PsiBlastHit:
file: Bio/Search/Hit/PsiBlastHit.pm
+ version: '1.007001'
Bio::Search::Hit::PullHitI:
file: Bio/Search/Hit/PullHitI.pm
+ version: '1.007001'
Bio::Search::Hit::hmmer3Hit:
file: Bio/Search/Hit/hmmer3Hit.pm
+ version: '1.007001'
Bio::Search::Iteration::GenericIteration:
file: Bio/Search/Iteration/GenericIteration.pm
+ version: '1.007001'
Bio::Search::Iteration::IterationI:
file: Bio/Search/Iteration/IterationI.pm
+ version: '1.007001'
Bio::Search::Processor:
file: Bio/Search/Processor.pm
+ version: '1.007001'
Bio::Search::Result::BlastPullResult:
file: Bio/Search/Result/BlastPullResult.pm
+ version: '1.007001'
Bio::Search::Result::BlastResult:
file: Bio/Search/Result/BlastResult.pm
+ version: '1.007001'
Bio::Search::Result::CrossMatchResult:
file: Bio/Search/Result/CrossMatchResult.pm
+ version: '1.007001'
Bio::Search::Result::GenericResult:
file: Bio/Search/Result/GenericResult.pm
+ version: '1.007001'
Bio::Search::Result::HMMERResult:
file: Bio/Search/Result/HMMERResult.pm
+ version: '1.007001'
Bio::Search::Result::HmmpfamResult:
file: Bio/Search/Result/HmmpfamResult.pm
+ version: '1.007001'
Bio::Search::Result::INFERNALResult:
file: Bio/Search/Result/INFERNALResult.pm
+ version: '1.007001'
Bio::Search::Result::PullResultI:
file: Bio/Search/Result/PullResultI.pm
+ version: '1.007001'
Bio::Search::Result::ResultFactory:
file: Bio/Search/Result/ResultFactory.pm
+ version: '1.007001'
Bio::Search::Result::ResultI:
file: Bio/Search/Result/ResultI.pm
+ version: '1.007001'
Bio::Search::Result::WABAResult:
file: Bio/Search/Result/WABAResult.pm
+ version: '1.007001'
Bio::Search::Result::hmmer3Result:
file: Bio/Search/Result/hmmer3Result.pm
+ version: '1.007001'
Bio::Search::SearchUtils:
file: Bio/Search/SearchUtils.pm
+ version: '1.007001'
Bio::Search::StatisticsI:
file: Bio/Search/StatisticsI.pm
+ version: '1.007001'
Bio::Search::Tiling::MapTileUtils:
file: Bio/Search/Tiling/MapTileUtils.pm
+ version: '1.007001'
Bio::Search::Tiling::MapTiling:
file: Bio/Search/Tiling/MapTiling.pm
+ version: '1.007001'
Bio::Search::Tiling::TilingI:
file: Bio/Search/Tiling/TilingI.pm
+ version: '1.007001'
Bio::SearchDist:
file: Bio/SearchDist.pm
+ version: '1.007001'
Bio::SearchIO:
file: Bio/SearchIO.pm
+ version: '1.007001'
Bio::SearchIO::EventHandlerI:
file: Bio/SearchIO/EventHandlerI.pm
+ version: '1.007001'
Bio::SearchIO::FastHitEventBuilder:
file: Bio/SearchIO/FastHitEventBuilder.pm
+ version: '1.007001'
Bio::SearchIO::IteratedSearchResultEventBuilder:
file: Bio/SearchIO/IteratedSearchResultEventBuilder.pm
+ version: '1.007001'
Bio::SearchIO::SearchResultEventBuilder:
file: Bio/SearchIO/SearchResultEventBuilder.pm
+ version: '1.007001'
Bio::SearchIO::SearchWriterI:
file: Bio/SearchIO/SearchWriterI.pm
+ version: '1.007001'
Bio::SearchIO::Writer::GbrowseGFF:
file: Bio/SearchIO/Writer/GbrowseGFF.pm
+ version: '1.007001'
Bio::SearchIO::Writer::HSPTableWriter:
file: Bio/SearchIO/Writer/HSPTableWriter.pm
+ version: '1.007001'
Bio::SearchIO::Writer::HTMLResultWriter:
file: Bio/SearchIO/Writer/HTMLResultWriter.pm
+ version: '1.007001'
Bio::SearchIO::Writer::HitTableWriter:
file: Bio/SearchIO/Writer/HitTableWriter.pm
+ version: '1.007001'
Bio::SearchIO::Writer::ResultTableWriter:
file: Bio/SearchIO/Writer/ResultTableWriter.pm
+ version: '1.007001'
Bio::SearchIO::Writer::TextResultWriter:
file: Bio/SearchIO/Writer/TextResultWriter.pm
+ version: '1.007001'
Bio::SearchIO::axt:
file: Bio/SearchIO/axt.pm
+ version: '1.007001'
Bio::SearchIO::blast:
file: Bio/SearchIO/blast.pm
+ version: '1.007001'
Bio::SearchIO::blast_pull:
file: Bio/SearchIO/blast_pull.pm
+ version: '1.007001'
Bio::SearchIO::blasttable:
file: Bio/SearchIO/blasttable.pm
+ version: '1.007001'
Bio::SearchIO::cross_match:
file: Bio/SearchIO/cross_match.pm
+ version: '1.007001'
Bio::SearchIO::erpin:
file: Bio/SearchIO/erpin.pm
+ version: '1.007001'
Bio::SearchIO::exonerate:
file: Bio/SearchIO/exonerate.pm
+ version: '1.007001'
Bio::SearchIO::fasta:
file: Bio/SearchIO/fasta.pm
+ version: '1.007001'
Bio::SearchIO::gmap_f9:
file: Bio/SearchIO/gmap_f9.pm
+ version: '1.007001'
Bio::SearchIO::hmmer:
file: Bio/SearchIO/hmmer.pm
+ version: '1.007001'
Bio::SearchIO::hmmer2:
file: Bio/SearchIO/hmmer2.pm
+ version: '1.007001'
Bio::SearchIO::hmmer3:
file: Bio/SearchIO/hmmer3.pm
+ version: '1.007001'
Bio::SearchIO::hmmer_pull:
file: Bio/SearchIO/hmmer_pull.pm
+ version: '1.007001'
Bio::SearchIO::infernal:
file: Bio/SearchIO/infernal.pm
+ version: '1.007001'
Bio::SearchIO::megablast:
file: Bio/SearchIO/megablast.pm
+ version: '1.007001'
Bio::SearchIO::psl:
file: Bio/SearchIO/psl.pm
+ version: '1.007001'
Bio::SearchIO::rnamotif:
file: Bio/SearchIO/rnamotif.pm
+ version: '1.007001'
Bio::SearchIO::sim4:
file: Bio/SearchIO/sim4.pm
+ version: '1.007001'
Bio::SearchIO::waba:
file: Bio/SearchIO/waba.pm
+ version: '1.007001'
Bio::SearchIO::wise:
file: Bio/SearchIO/wise.pm
+ version: '1.007001'
Bio::Seq:
file: Bio/Seq.pm
+ version: '1.007001'
Bio::Seq::BaseSeqProcessor:
file: Bio/Seq/BaseSeqProcessor.pm
+ version: '1.007001'
Bio::Seq::EncodedSeq:
file: Bio/Seq/EncodedSeq.pm
+ version: '1.007001'
Bio::Seq::LargeLocatableSeq:
file: Bio/Seq/LargeLocatableSeq.pm
+ version: '1.007001'
Bio::Seq::LargePrimarySeq:
file: Bio/Seq/LargePrimarySeq.pm
+ version: '1.007001'
Bio::Seq::LargeSeq:
file: Bio/Seq/LargeSeq.pm
+ version: '1.007001'
Bio::Seq::LargeSeqI:
file: Bio/Seq/LargeSeqI.pm
+ version: '1.007001'
Bio::Seq::Meta:
file: Bio/Seq/Meta.pm
+ version: '1.007001'
Bio::Seq::Meta::Array:
file: Bio/Seq/Meta/Array.pm
+ version: '1.007001'
Bio::Seq::MetaI:
file: Bio/Seq/MetaI.pm
+ version: '1.007001'
Bio::Seq::PrimaryQual:
file: Bio/Seq/PrimaryQual.pm
+ version: '1.007001'
Bio::Seq::PrimaryQual::Qual:
file: Bio/DB/Qual.pm
+ version: '1.007001'
Bio::Seq::PrimedSeq:
file: Bio/Seq/PrimedSeq.pm
+ version: '1.007001'
Bio::Seq::QualI:
file: Bio/Seq/QualI.pm
+ version: '1.007001'
Bio::Seq::Quality:
file: Bio/Seq/Quality.pm
+ version: '1.007001'
Bio::Seq::RichSeq:
file: Bio/Seq/RichSeq.pm
+ version: '1.007001'
Bio::Seq::RichSeqI:
file: Bio/Seq/RichSeqI.pm
+ version: '1.007001'
Bio::Seq::SeqBuilder:
file: Bio/Seq/SeqBuilder.pm
+ version: '1.007001'
Bio::Seq::SeqFactory:
file: Bio/Seq/SeqFactory.pm
+ version: '1.007001'
Bio::Seq::SeqFastaSpeedFactory:
file: Bio/Seq/SeqFastaSpeedFactory.pm
+ version: '1.007001'
Bio::Seq::SeqWithQuality:
file: Bio/Seq/SeqWithQuality.pm
+ version: '1.007001'
Bio::Seq::SequenceTrace:
file: Bio/Seq/SequenceTrace.pm
+ version: '1.007001'
Bio::Seq::SimulatedRead:
file: Bio/Seq/SimulatedRead.pm
+ version: '1.007001'
Bio::Seq::TraceI:
file: Bio/Seq/TraceI.pm
+ version: '1.007001'
Bio::SeqAnalysisParserI:
file: Bio/SeqAnalysisParserI.pm
+ version: '1.007001'
Bio::SeqEvolution::DNAPoint:
file: Bio/SeqEvolution/DNAPoint.pm
+ version: '1.007001'
Bio::SeqEvolution::EvolutionI:
file: Bio/SeqEvolution/EvolutionI.pm
+ version: '1.007001'
Bio::SeqEvolution::Factory:
file: Bio/SeqEvolution/Factory.pm
+ version: '1.007001'
Bio::SeqFeature::Amplicon:
file: Bio/SeqFeature/Amplicon.pm
+ version: '1.007001'
Bio::SeqFeature::AnnotationAdaptor:
file: Bio/SeqFeature/AnnotationAdaptor.pm
+ version: '1.007001'
Bio::SeqFeature::Collection:
file: Bio/SeqFeature/Collection.pm
+ version: '1.007001'
Bio::SeqFeature::CollectionI:
file: Bio/SeqFeature/CollectionI.pm
+ version: '1.007001'
Bio::SeqFeature::Computation:
file: Bio/SeqFeature/Computation.pm
+ version: '1.007001'
Bio::SeqFeature::FeaturePair:
file: Bio/SeqFeature/FeaturePair.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::Exon:
file: Bio/SeqFeature/Gene/Exon.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::ExonI:
file: Bio/SeqFeature/Gene/ExonI.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::GeneStructure:
file: Bio/SeqFeature/Gene/GeneStructure.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::GeneStructureI:
file: Bio/SeqFeature/Gene/GeneStructureI.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::Intron:
file: Bio/SeqFeature/Gene/Intron.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::NC_Feature:
file: Bio/SeqFeature/Gene/NC_Feature.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::Poly_A_site:
file: Bio/SeqFeature/Gene/Poly_A_site.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::Promoter:
file: Bio/SeqFeature/Gene/Promoter.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::Transcript:
file: Bio/SeqFeature/Gene/Transcript.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::TranscriptI:
file: Bio/SeqFeature/Gene/TranscriptI.pm
+ version: '1.007001'
Bio::SeqFeature::Gene::UTR:
file: Bio/SeqFeature/Gene/UTR.pm
+ version: '1.007001'
Bio::SeqFeature::Generic:
file: Bio/SeqFeature/Generic.pm
+ version: '1.007001'
Bio::SeqFeature::Lite:
file: Bio/SeqFeature/Lite.pm
+ version: '1.007001'
Bio::SeqFeature::PositionProxy:
file: Bio/SeqFeature/PositionProxy.pm
+ version: '1.007001'
Bio::SeqFeature::Primer:
file: Bio/SeqFeature/Primer.pm
+ version: '1.007001'
Bio::SeqFeature::SiRNA::Oligo:
file: Bio/SeqFeature/SiRNA/Oligo.pm
+ version: '1.007001'
Bio::SeqFeature::SiRNA::Pair:
file: Bio/SeqFeature/SiRNA/Pair.pm
+ version: '1.007001'
Bio::SeqFeature::Similarity:
file: Bio/SeqFeature/Similarity.pm
+ version: '1.007001'
Bio::SeqFeature::SimilarityPair:
file: Bio/SeqFeature/SimilarityPair.pm
+ version: '1.007001'
Bio::SeqFeature::SubSeq:
file: Bio/SeqFeature/SubSeq.pm
+ version: '1.007001'
Bio::SeqFeature::Tools::FeatureNamer:
file: Bio/SeqFeature/Tools/FeatureNamer.pm
+ version: '1.007001'
Bio::SeqFeature::Tools::IDHandler:
file: Bio/SeqFeature/Tools/IDHandler.pm
+ version: '1.007001'
Bio::SeqFeature::Tools::TypeMapper:
file: Bio/SeqFeature/Tools/TypeMapper.pm
+ version: '1.007001'
Bio::SeqFeature::Tools::Unflattener:
file: Bio/SeqFeature/Tools/Unflattener.pm
+ version: '1.007001'
Bio::SeqFeature::TypedSeqFeatureI:
file: Bio/SeqFeature/TypedSeqFeatureI.pm
+ version: '1.007001'
Bio::SeqFeatureI:
file: Bio/SeqFeatureI.pm
+ version: '1.007001'
Bio::SeqI:
file: Bio/SeqI.pm
+ version: '1.007001'
Bio::SeqIO:
file: Bio/SeqIO.pm
+ version: '1.007001'
Bio::SeqIO::FTHelper:
file: Bio/SeqIO/FTHelper.pm
+ version: '1.007001'
Bio::SeqIO::Handler::GenericRichSeqHandler:
file: Bio/SeqIO/Handler/GenericRichSeqHandler.pm
+ version: '1.007001'
Bio::SeqIO::MultiFile:
file: Bio/SeqIO/MultiFile.pm
+ version: '1.007001'
Bio::SeqIO::abi:
file: Bio/SeqIO/abi.pm
+ version: '1.007001'
Bio::SeqIO::ace:
file: Bio/SeqIO/ace.pm
+ version: '1.007001'
Bio::SeqIO::agave:
file: Bio/SeqIO/agave.pm
+ version: '1.007001'
Bio::SeqIO::alf:
file: Bio/SeqIO/alf.pm
+ version: '1.007001'
Bio::SeqIO::asciitree:
file: Bio/SeqIO/asciitree.pm
+ version: '1.007001'
Bio::SeqIO::bsml:
file: Bio/SeqIO/bsml.pm
+ version: '1.007001'
Bio::SeqIO::bsml_sax:
file: Bio/SeqIO/bsml_sax.pm
+ version: '1.007001'
Bio::SeqIO::chadoxml:
file: Bio/SeqIO/chadoxml.pm
+ version: '1.007001'
Bio::SeqIO::chaos:
file: Bio/SeqIO/chaos.pm
+ version: '1.007001'
Bio::SeqIO::chaosxml:
file: Bio/SeqIO/chaosxml.pm
+ version: '1.007001'
Bio::SeqIO::ctf:
file: Bio/SeqIO/ctf.pm
+ version: '1.007001'
Bio::SeqIO::embl:
file: Bio/SeqIO/embl.pm
+ version: '1.007001'
Bio::SeqIO::embldriver:
file: Bio/SeqIO/embldriver.pm
+ version: '1.007001'
Bio::SeqIO::entrezgene:
file: Bio/SeqIO/entrezgene.pm
+ version: '1.007001'
Bio::SeqIO::excel:
file: Bio/SeqIO/excel.pm
+ version: '1.007001'
Bio::SeqIO::exp:
file: Bio/SeqIO/exp.pm
+ version: '1.007001'
Bio::SeqIO::fasta:
file: Bio/SeqIO/fasta.pm
+ version: '1.007001'
Bio::SeqIO::fastq:
file: Bio/SeqIO/fastq.pm
+ version: '1.007001'
Bio::SeqIO::flybase_chadoxml:
file: Bio/SeqIO/flybase_chadoxml.pm
+ version: '1.007001'
Bio::SeqIO::game:
file: Bio/SeqIO/game.pm
+ version: '1.007001'
Bio::SeqIO::game::featHandler:
file: Bio/SeqIO/game/featHandler.pm
+ version: '1.007001'
Bio::SeqIO::game::gameHandler:
file: Bio/SeqIO/game/gameHandler.pm
+ version: '1.007001'
Bio::SeqIO::game::gameSubs:
file: Bio/SeqIO/game/gameSubs.pm
+ version: '1.007001'
Bio::SeqIO::game::gameWriter:
file: Bio/SeqIO/game/gameWriter.pm
+ version: '1.007001'
Bio::SeqIO::game::seqHandler:
file: Bio/SeqIO/game/seqHandler.pm
+ version: '1.007001'
Bio::SeqIO::gbdriver:
file: Bio/SeqIO/gbdriver.pm
+ version: '1.007001'
Bio::SeqIO::gbxml:
file: Bio/SeqIO/gbxml.pm
+ version: '1.007001'
Bio::SeqIO::gcg:
file: Bio/SeqIO/gcg.pm
+ version: '1.007001'
Bio::SeqIO::genbank:
file: Bio/SeqIO/genbank.pm
+ version: '1.007001'
Bio::SeqIO::interpro:
file: Bio/SeqIO/interpro.pm
+ version: '1.007001'
Bio::SeqIO::kegg:
file: Bio/SeqIO/kegg.pm
+ version: '1.007001'
Bio::SeqIO::largefasta:
file: Bio/SeqIO/largefasta.pm
+ version: '1.007001'
Bio::SeqIO::lasergene:
file: Bio/SeqIO/lasergene.pm
+ version: '1.007001'
Bio::SeqIO::locuslink:
file: Bio/SeqIO/locuslink.pm
+ version: '1.007001'
Bio::SeqIO::mbsout:
file: Bio/SeqIO/mbsout.pm
+ version: '1.007001'
Bio::SeqIO::metafasta:
file: Bio/SeqIO/metafasta.pm
+ version: '1.007001'
Bio::SeqIO::msout:
file: Bio/SeqIO/msout.pm
+ version: '1.007001'
Bio::SeqIO::nexml:
file: Bio/SeqIO/nexml.pm
+ version: '1.007001'
Bio::SeqIO::phd:
file: Bio/SeqIO/phd.pm
+ version: '1.007001'
Bio::SeqIO::pir:
file: Bio/SeqIO/pir.pm
+ version: '1.007001'
Bio::SeqIO::pln:
file: Bio/SeqIO/pln.pm
+ version: '1.007001'
Bio::SeqIO::qual:
file: Bio/SeqIO/qual.pm
+ version: '1.007001'
Bio::SeqIO::raw:
file: Bio/SeqIO/raw.pm
+ version: '1.007001'
Bio::SeqIO::scf:
file: Bio/SeqIO/scf.pm
+ version: '1.007001'
Bio::SeqIO::seqxml:
file: Bio/SeqIO/seqxml.pm
+ version: '1.007001'
Bio::SeqIO::strider:
file: Bio/SeqIO/strider.pm
+ version: '1.007001'
Bio::SeqIO::swiss:
file: Bio/SeqIO/swiss.pm
+ version: '1.007001'
Bio::SeqIO::swissdriver:
file: Bio/SeqIO/swissdriver.pm
+ version: '1.007001'
Bio::SeqIO::tab:
file: Bio/SeqIO/tab.pm
+ version: '1.007001'
Bio::SeqIO::table:
file: Bio/SeqIO/table.pm
+ version: '1.007001'
Bio::SeqIO::tigr:
file: Bio/SeqIO/tigr.pm
+ version: '1.007001'
Bio::SeqIO::tigrxml:
file: Bio/SeqIO/tigrxml.pm
+ version: '1.007001'
Bio::SeqIO::tinyseq:
file: Bio/SeqIO/tinyseq.pm
+ version: '1.007001'
Bio::SeqIO::tinyseq::tinyseqHandler:
file: Bio/SeqIO/tinyseq/tinyseqHandler.pm
+ version: '1.007001'
Bio::SeqIO::ztr:
file: Bio/SeqIO/ztr.pm
+ version: '1.007001'
Bio::SeqUtils:
file: Bio/SeqUtils.pm
+ version: '1.007001'
Bio::SimpleAlign:
file: Bio/SimpleAlign.pm
+ version: '1.007001'
Bio::SimpleAnalysisI:
file: Bio/SimpleAnalysisI.pm
+ version: '1.007001'
Bio::Species:
file: Bio/Species.pm
+ version: '1.007001'
Bio::Structure::Atom:
file: Bio/Structure/Atom.pm
+ version: '1.007001'
Bio::Structure::Chain:
file: Bio/Structure/Chain.pm
+ version: '1.007001'
Bio::Structure::Entry:
file: Bio/Structure/Entry.pm
+ version: '1.007001'
Bio::Structure::IO:
file: Bio/Structure/IO.pm
+ version: '1.007001'
Bio::Structure::IO::pdb:
file: Bio/Structure/IO/pdb.pm
+ version: '1.007001'
Bio::Structure::Model:
file: Bio/Structure/Model.pm
+ version: '1.007001'
Bio::Structure::Residue:
file: Bio/Structure/Residue.pm
+ version: '1.007001'
Bio::Structure::SecStr::DSSP::Res:
file: Bio/Structure/SecStr/DSSP/Res.pm
+ version: '1.007001'
Bio::Structure::SecStr::STRIDE::Res:
file: Bio/Structure/SecStr/STRIDE/Res.pm
+ version: '1.007001'
Bio::Structure::StructureI:
file: Bio/Structure/StructureI.pm
+ version: '1.007001'
Bio::Symbol::Alphabet:
file: Bio/Symbol/Alphabet.pm
+ version: '1.007001'
Bio::Symbol::AlphabetI:
file: Bio/Symbol/AlphabetI.pm
+ version: '1.007001'
Bio::Symbol::DNAAlphabet:
file: Bio/Symbol/DNAAlphabet.pm
+ version: '1.007001'
Bio::Symbol::ProteinAlphabet:
file: Bio/Symbol/ProteinAlphabet.pm
+ version: '1.007001'
Bio::Symbol::Symbol:
file: Bio/Symbol/Symbol.pm
+ version: '1.007001'
Bio::Symbol::SymbolI:
file: Bio/Symbol/SymbolI.pm
+ version: '1.007001'
Bio::Taxon:
file: Bio/Taxon.pm
+ version: '1.007001'
Bio::Taxonomy:
file: Bio/Taxonomy.pm
+ version: '1.007001'
Bio::Taxonomy::FactoryI:
file: Bio/Taxonomy/FactoryI.pm
+ version: '1.007001'
Bio::Taxonomy::Node:
file: Bio/Taxonomy/Node.pm
+ version: '1.007001'
Bio::Taxonomy::Taxon:
file: Bio/Taxonomy/Taxon.pm
+ version: '1.007001'
Bio::Taxonomy::Tree:
file: Bio/Taxonomy/Tree.pm
+ version: '1.007001'
Bio::Tools::AlignFactory:
file: Bio/Tools/AlignFactory.pm
+ version: '1.007001'
Bio::Tools::Alignment::Consed:
file: Bio/Tools/Alignment/Consed.pm
+ version: '1.007001'
Bio::Tools::Alignment::Trim:
file: Bio/Tools/Alignment/Trim.pm
+ version: '1.007001'
Bio::Tools::AmpliconSearch:
file: Bio/Tools/AmpliconSearch.pm
+ version: '1.007001'
Bio::Tools::Analysis::DNA::ESEfinder:
file: Bio/Tools/Analysis/DNA/ESEfinder.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::Domcut:
file: Bio/Tools/Analysis/Protein/Domcut.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::ELM:
file: Bio/Tools/Analysis/Protein/ELM.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::GOR4:
file: Bio/Tools/Analysis/Protein/GOR4.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::HNN:
file: Bio/Tools/Analysis/Protein/HNN.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::NetPhos:
file: Bio/Tools/Analysis/Protein/NetPhos.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::Scansite:
file: Bio/Tools/Analysis/Protein/Scansite.pm
+ version: '1.007001'
Bio::Tools::Analysis::Protein::Sopma:
file: Bio/Tools/Analysis/Protein/Sopma.pm
+ version: '1.007001'
Bio::Tools::Analysis::SimpleAnalysisBase:
file: Bio/Tools/Analysis/SimpleAnalysisBase.pm
+ version: '1.007001'
Bio::Tools::AnalysisResult:
file: Bio/Tools/AnalysisResult.pm
+ version: '1.007001'
Bio::Tools::Blat:
file: Bio/Tools/Blat.pm
+ version: '1.007001'
Bio::Tools::CodonTable:
file: Bio/Tools/CodonTable.pm
+ version: '1.007001'
Bio::Tools::Coil:
file: Bio/Tools/Coil.pm
+ version: '1.007001'
Bio::Tools::ECnumber:
file: Bio/Tools/ECnumber.pm
+ version: '1.007001'
Bio::Tools::EMBOSS::Palindrome:
file: Bio/Tools/EMBOSS/Palindrome.pm
+ version: '1.007001'
Bio::Tools::EPCR:
file: Bio/Tools/EPCR.pm
+ version: '1.007001'
Bio::Tools::ESTScan:
file: Bio/Tools/ESTScan.pm
+ version: '1.007001'
Bio::Tools::Eponine:
file: Bio/Tools/Eponine.pm
+ version: '1.007001'
Bio::Tools::Est2Genome:
file: Bio/Tools/Est2Genome.pm
+ version: '1.007001'
Bio::Tools::Fgenesh:
file: Bio/Tools/Fgenesh.pm
+ version: '1.007001'
Bio::Tools::FootPrinter:
file: Bio/Tools/FootPrinter.pm
+ version: '1.007001'
Bio::Tools::GFF:
file: Bio/Tools/GFF.pm
+ version: '1.007001'
Bio::Tools::Gel:
file: Bio/Tools/Gel.pm
+ version: '1.007001'
Bio::Tools::Geneid:
file: Bio/Tools/Geneid.pm
+ version: '1.007001'
Bio::Tools::Genemark:
file: Bio/Tools/Genemark.pm
+ version: '1.007001'
Bio::Tools::Genewise:
file: Bio/Tools/Genewise.pm
+ version: '1.007001'
Bio::Tools::Genomewise:
file: Bio/Tools/Genomewise.pm
+ version: '1.007001'
Bio::Tools::Genscan:
file: Bio/Tools/Genscan.pm
+ version: '1.007001'
Bio::Tools::Glimmer:
file: Bio/Tools/Glimmer.pm
+ version: '1.007001'
Bio::Tools::Grail:
file: Bio/Tools/Grail.pm
+ version: '1.007001'
Bio::Tools::GuessSeqFormat:
file: Bio/Tools/GuessSeqFormat.pm
+ version: '1.007001'
Bio::Tools::HMMER::Domain:
file: Bio/Tools/HMMER/Domain.pm
+ version: '1.007001'
Bio::Tools::HMMER::Results:
file: Bio/Tools/HMMER/Results.pm
+ version: '1.007001'
Bio::Tools::HMMER::Set:
file: Bio/Tools/HMMER/Set.pm
+ version: '1.007001'
Bio::Tools::Hmmpfam:
file: Bio/Tools/Hmmpfam.pm
+ version: '1.007001'
Bio::Tools::IUPAC:
file: Bio/Tools/IUPAC.pm
+ version: '1.007001'
Bio::Tools::Lucy:
file: Bio/Tools/Lucy.pm
+ version: '1.007001'
Bio::Tools::MZEF:
file: Bio/Tools/MZEF.pm
+ version: '1.007001'
Bio::Tools::Match:
file: Bio/Tools/Match.pm
+ version: '1.007001'
Bio::Tools::OddCodes:
file: Bio/Tools/OddCodes.pm
+ version: '1.007001'
Bio::Tools::Phylo::Gerp:
file: Bio/Tools/Phylo/Gerp.pm
+ version: '1.007001'
Bio::Tools::Phylo::Gumby:
file: Bio/Tools/Phylo/Gumby.pm
+ version: '1.007001'
Bio::Tools::Phylo::Molphy:
file: Bio/Tools/Phylo/Molphy.pm
+ version: '1.007001'
Bio::Tools::Phylo::Molphy::Result:
file: Bio/Tools/Phylo/Molphy/Result.pm
+ version: '1.007001'
Bio::Tools::Phylo::PAML:
file: Bio/Tools/Phylo/PAML.pm
+ version: '1.007001'
Bio::Tools::Phylo::PAML::Codeml:
file: Bio/Tools/Phylo/PAML/Codeml.pm
+ version: '1.007001'
Bio::Tools::Phylo::PAML::ModelResult:
file: Bio/Tools/Phylo/PAML/ModelResult.pm
+ version: '1.007001'
Bio::Tools::Phylo::PAML::Result:
file: Bio/Tools/Phylo/PAML/Result.pm
+ version: '1.007001'
Bio::Tools::Phylo::Phylip::ProtDist:
file: Bio/Tools/Phylo/Phylip/ProtDist.pm
+ version: '1.007001'
Bio::Tools::Prediction::Exon:
file: Bio/Tools/Prediction/Exon.pm
+ version: '1.007001'
Bio::Tools::Prediction::Gene:
file: Bio/Tools/Prediction/Gene.pm
+ version: '1.007001'
Bio::Tools::Primer3:
file: Bio/Tools/Primer3.pm
+ version: '1.007001'
Bio::Tools::Primer::Assessor::Base:
file: Bio/Tools/Primer/Assessor/Base.pm
+ version: '1.007001'
Bio::Tools::Primer::AssessorI:
file: Bio/Tools/Primer/AssessorI.pm
+ version: '1.007001'
Bio::Tools::Primer::Feature:
file: Bio/Tools/Primer/Feature.pm
+ version: '1.007001'
Bio::Tools::Primer::Pair:
file: Bio/Tools/Primer/Pair.pm
+ version: '1.007001'
Bio::Tools::Prints:
file: Bio/Tools/Prints.pm
+ version: '1.007001'
Bio::Tools::Profile:
file: Bio/Tools/Profile.pm
+ version: '1.007001'
Bio::Tools::Promoterwise:
file: Bio/Tools/Promoterwise.pm
+ version: '1.007001'
Bio::Tools::PrositeScan:
file: Bio/Tools/PrositeScan.pm
+ version: '1.007001'
Bio::Tools::Protparam:
file: Bio/Tools/Protparam.pm
+ version: '1.007001'
Bio::Tools::Pseudowise:
file: Bio/Tools/Pseudowise.pm
+ version: '1.007001'
Bio::Tools::QRNA:
file: Bio/Tools/QRNA.pm
+ version: '1.007001'
Bio::Tools::RandomDistFunctions:
file: Bio/Tools/RandomDistFunctions.pm
+ version: '1.007001'
Bio::Tools::RepeatMasker:
file: Bio/Tools/RepeatMasker.pm
+ version: '1.007001'
Bio::Tools::Run::GenericParameters:
file: Bio/Tools/Run/GenericParameters.pm
+ version: '1.007001'
Bio::Tools::Run::ParametersI:
file: Bio/Tools/Run/ParametersI.pm
+ version: '1.007001'
Bio::Tools::Run::RemoteBlast:
file: Bio/Tools/Run/RemoteBlast.pm
+ version: '1.007001'
Bio::Tools::Seg:
file: Bio/Tools/Seg.pm
+ version: '1.007001'
Bio::Tools::SeqPattern:
file: Bio/Tools/SeqPattern.pm
+ version: '1.007001'
Bio::Tools::SeqPattern::Backtranslate:
file: Bio/Tools/SeqPattern/Backtranslate.pm
+ version: '1.007001'
Bio::Tools::SeqStats:
file: Bio/Tools/SeqStats.pm
+ version: '1.007001'
Bio::Tools::SeqWords:
file: Bio/Tools/SeqWords.pm
+ version: '1.007001'
Bio::Tools::SiRNA:
file: Bio/Tools/SiRNA.pm
+ version: '1.007001'
Bio::Tools::SiRNA::Ruleset::saigo:
file: Bio/Tools/SiRNA/Ruleset/saigo.pm
+ version: '1.007001'
Bio::Tools::SiRNA::Ruleset::tuschl:
file: Bio/Tools/SiRNA/Ruleset/tuschl.pm
+ version: '1.007001'
Bio::Tools::Sigcleave:
file: Bio/Tools/Sigcleave.pm
+ version: '1.007001'
Bio::Tools::Signalp:
file: Bio/Tools/Signalp.pm
+ version: '1.007001'
Bio::Tools::Signalp::ExtendedSignalp:
file: Bio/Tools/Signalp/ExtendedSignalp.pm
+ version: '1.007001'
Bio::Tools::Sim4::Exon:
file: Bio/Tools/Sim4/Exon.pm
+ version: '1.007001'
Bio::Tools::Sim4::Results:
file: Bio/Tools/Sim4/Results.pm
+ version: '1.007001'
Bio::Tools::Spidey::Exon:
file: Bio/Tools/Spidey/Exon.pm
+ version: '1.007001'
Bio::Tools::Spidey::Results:
file: Bio/Tools/Spidey/Results.pm
+ version: '1.007001'
Bio::Tools::TandemRepeatsFinder:
file: Bio/Tools/TandemRepeatsFinder.pm
+ version: '1.007001'
Bio::Tools::TargetP:
file: Bio/Tools/TargetP.pm
+ version: '1.007001'
Bio::Tools::Tmhmm:
file: Bio/Tools/Tmhmm.pm
+ version: '1.007001'
Bio::Tools::dpAlign:
file: Bio/Tools/dpAlign.pm
+ version: '1.007001'
Bio::Tools::ipcress:
file: Bio/Tools/ipcress.pm
+ version: '1.007001'
Bio::Tools::isPcr:
file: Bio/Tools/isPcr.pm
+ version: '1.007001'
Bio::Tools::pICalculator:
file: Bio/Tools/pICalculator.pm
+ version: '1.007001'
Bio::Tools::pSW:
file: Bio/Tools/pSW.pm
+ version: '1.007001'
Bio::Tools::tRNAscanSE:
file: Bio/Tools/tRNAscanSE.pm
+ version: '1.007001'
Bio::Tree::AlleleNode:
file: Bio/Tree/AlleleNode.pm
+ version: '1.007001'
Bio::Tree::AnnotatableNode:
file: Bio/Tree/AnnotatableNode.pm
+ version: '1.007001'
Bio::Tree::Compatible:
file: Bio/Tree/Compatible.pm
+ version: '1.007001'
Bio::Tree::DistanceFactory:
file: Bio/Tree/DistanceFactory.pm
+ version: '1.007001'
Bio::Tree::Draw::Cladogram:
file: Bio/Tree/Draw/Cladogram.pm
+ version: '1.007001'
Bio::Tree::Node:
file: Bio/Tree/Node.pm
+ version: '1.007001'
Bio::Tree::NodeI:
file: Bio/Tree/NodeI.pm
+ version: '1.007001'
Bio::Tree::NodeNHX:
file: Bio/Tree/NodeNHX.pm
+ version: '1.007001'
Bio::Tree::RandomFactory:
file: Bio/Tree/RandomFactory.pm
+ version: '1.007001'
Bio::Tree::Statistics:
file: Bio/Tree/Statistics.pm
+ version: '1.007001'
Bio::Tree::Tree:
file: Bio/Tree/Tree.pm
+ version: '1.007001'
Bio::Tree::TreeFunctionsI:
file: Bio/Tree/TreeFunctionsI.pm
+ version: '1.007001'
Bio::Tree::TreeI:
file: Bio/Tree/TreeI.pm
+ version: '1.007001'
Bio::TreeIO:
file: Bio/TreeIO.pm
+ version: '1.007001'
Bio::TreeIO::NewickParser:
file: Bio/TreeIO/NewickParser.pm
+ version: '1.007001'
Bio::TreeIO::TreeEventBuilder:
file: Bio/TreeIO/TreeEventBuilder.pm
+ version: '1.007001'
Bio::TreeIO::cluster:
file: Bio/TreeIO/cluster.pm
+ version: '1.007001'
Bio::TreeIO::lintree:
file: Bio/TreeIO/lintree.pm
+ version: '1.007001'
Bio::TreeIO::newick:
file: Bio/TreeIO/newick.pm
+ version: '1.007001'
Bio::TreeIO::nexml:
file: Bio/TreeIO/nexml.pm
+ version: '1.007001'
Bio::TreeIO::nexus:
file: Bio/TreeIO/nexus.pm
+ version: '1.007001'
Bio::TreeIO::nhx:
file: Bio/TreeIO/nhx.pm
+ version: '1.007001'
Bio::TreeIO::pag:
file: Bio/TreeIO/pag.pm
+ version: '1.007001'
Bio::TreeIO::phyloxml:
file: Bio/TreeIO/phyloxml.pm
+ version: '1.007001'
Bio::TreeIO::svggraph:
file: Bio/TreeIO/svggraph.pm
+ version: '1.007001'
Bio::TreeIO::tabtree:
file: Bio/TreeIO/tabtree.pm
+ version: '1.007001'
Bio::UpdateableSeqI:
file: Bio/UpdateableSeqI.pm
+ version: '1.007001'
Bio::Variation::AAChange:
file: Bio/Variation/AAChange.pm
+ version: '1.007001'
Bio::Variation::AAReverseMutate:
file: Bio/Variation/AAReverseMutate.pm
+ version: '1.007001'
Bio::Variation::Allele:
file: Bio/Variation/Allele.pm
+ version: '1.007001'
Bio::Variation::DNAMutation:
file: Bio/Variation/DNAMutation.pm
+ version: '1.007001'
Bio::Variation::IO:
file: Bio/Variation/IO.pm
+ version: '1.007001'
Bio::Variation::IO::flat:
file: Bio/Variation/IO/flat.pm
+ version: '1.007001'
Bio::Variation::IO::xml:
file: Bio/Variation/IO/xml.pm
+ version: '1.007001'
Bio::Variation::RNAChange:
file: Bio/Variation/RNAChange.pm
+ version: '1.007001'
Bio::Variation::SNP:
file: Bio/Variation/SNP.pm
+ version: '1.007001'
Bio::Variation::SeqDiff:
file: Bio/Variation/SeqDiff.pm
+ version: '1.007001'
Bio::Variation::VariantI:
file: Bio/Variation/VariantI.pm
+ version: '1.007001'
Bio::WebAgent:
file: Bio/WebAgent.pm
+ version: '1.007001'
FeatureStore:
file: Bio/DB/GFF/Adaptor/berkeleydb.pm
+ version: '1.007001'
recommends:
Algorithm::Munkres: '0'
Array::Compare: '0'
@@ -1674,4 +2474,4 @@ requires:
perl: v5.6.1
resources:
license: http://dev.perl.org/licenses/
-version: '1.007000'
+version: '1.007001'
diff --git a/t/RemoteDB/GenBank.t b/t/RemoteDB/GenBank.t
index 62fa9a4..f8e4fa0 100755
--- a/t/RemoteDB/GenBank.t
+++ b/t/RemoteDB/GenBank.t
@@ -18,11 +18,12 @@ BEGIN {
my %expected_lengths = (
'MUSIGHBA1' => 408,
+ 'J00522.1' => 408,
'AF303112' => 1611,
'AF303112.1' => 1611,
'AF041456' => 1156,
'CELRABGDI' => 1743,
- 'JH374761' => 38055
+ 'JH374761' => 38055,
);
my ($gb, $seq, $seqio, $seqin);
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bioperl.git
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