[med-svn] [bart] branch master updated (94ced94 -> 08cf828)
Martin Uecker
uecker-guest at moszumanska.debian.org
Fri Jan 8 18:23:28 UTC 2016
This is an automated email from the git hooks/post-receive script.
uecker-guest pushed a change to branch master
in repository bart.
from 94ced94 really add bart_completion.sh
new d015d7f ecalib: add -S to help
new 3062d8e add target to (re-)produce release tarballs
new dcd088c add estdims to estimate noncartesian dimension
new c7741ca move estdims from TBASE to TRECO
new 3fb88f8 removed -lnoncart from bbox
new d675d5d Merge pull request #16 from frankong/master
new cfa99fd fix estdims modules
new 2b39268 fix estdims modules
new 7e941f0 Merge pull request #17 from frankong/master
new 9b9a9d7 fixed bart.m memory bug. bug: when bart.m errors, the tmp memories are not deleted
new 91ea04a Merge pull request #18 from frankong/master
new 6d0fbae use -lz only for static linking
new 95aaf2a add initial bart completion script
new 789ad1d prefer commands in TOOLBOX_PATH if set
new 1c416d3 improve bart script
new 088dc63 homodyne: input in image domain
new c8a1a96 homodyne: treat all dimensions as equals
new e350609 use ramp filter (but leave in staircase step filter)
new 7b4bd25 homodyne: add option to change the slope/size of the ramp filter, between 0 and 1
new 5e00882 homodyne: call num_init for parallelization
new 0560440 update help string
new b804fa8 add missing -g option
new 621bf72 Makefile fix
new 39931b9 typo
new becc3c0 bart matlab script: check for empty args + formatting
new 41dd453 move bart_completion.sh
new 8df9dea add least-absolute deviation
new 9830f0b add rdiag operator
new 577a1a2 remove some #ifdefs
new 89036fb new function for processing of cmline options
new 0d69d76 use cmdline in fft
new 7ff1d9d fix warnings
new 4aa8e3a update option processing
new 35b7ffa use 'cmdline' function in some tools
new ff7ac34 convert more tools
new e26804c add vec3/select
new 8f21cec cmdline: convert rest of the tools
new 57c42f0 Merge branch 'opts'
new 75398e9 update to grasp script (courtesy of tobias block)
new 0e8983c Makefile improvements
new 95693ac use libc's j1
new c306467 add our own modified bessel function
new 7723d83 use it
new fedc08b remove GSL
new 71c6c0a update README
new 995d182 Merge pull request #22 from mrirecon/specfun
new a8fda75 save command line options
new 2bf8053 always save cmdline
new e7aef89 quote function
new 44887f8 simplify
new e35513a remove deprecated commands
new 14eb376 remove imshow3.m (should be moved to matlab examples)
new f0f4204 README update
new 0833b88 references
new 1fd296b move update-* scripts to rules/
new 6f56708 name in manpage
new b77ea2e build fix
new 8b397d0 use xmalloc
new 2ecbbc7 copyright
new b89ebab system-wide addon commands
new 285366b makefile
new 3b3691f build fix cuda
new 3fc7a3a makefile fix
new e164461 type-save option macros, and formatting
new 5471c07 fix buffer overrun
new aca2437 add some help strings
new 4e98ed9 add MIP/mIP tool
new e943412 mip:copyright
new cda61b6 fix bug in nufft argument handling
new c8f24e8 allow lowercase 'd' as well
new ccc38ab remove sizeinit
new df2a6b4 deprecate upper-case vector options
new 077fc93 Merge branch 'grlee77-nufft_bugfix'
new 95a4ba1 add 3d phantom
new d401ba0 phantom: permute dims
new 856d987 bump version
new 407104d Merge tag 'v0.3.00'
new 52121b7 remove GSL dependency
new eb31797 add README.Debian
new db38601 copyright
new 257a96f add files to bart-dev
new 08cf828 update changelog
The 82 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
LICENSE | 7 +-
Makefile | 91 +++--
README | 12 +-
debian/README.Debian | 23 ++
debian/bart-dev.install | 4 +
debian/changelog | 2 +-
debian/control | 2 +-
debian/copyright | 4 +-
doc/bart.1 | 6 +-
doc/references.txt | 292 ++++++++++++--
matlab/bart.m | 37 +-
matlab/imshow3.m | 50 ---
matlab/writecfl.m | 1 +
rules/misc.mk | 2 +-
update-if-changed.sh => rules/update-if-changed.sh | 0
update-version.sh => rules/update-version.sh | 2 +-
{debian => scripts}/bart_completion.sh | 0
scripts/grasp.sh | 57 ++-
src/bart.c | 42 +-
src/bench.c | 63 +--
src/bitmask.c | 57 +--
src/bpsense.c | 126 ++----
src/calib/direct.c | 18 +-
src/calmat.c | 86 +---
src/cc.c | 97 +----
src/cdf97.c | 62 +--
src/conv.c | 54 +--
src/ecalib.c | 194 +++------
src/ecaltwo.c | 92 ++---
src/estdims.c | 48 +++
src/estvar.c | 87 ++--
src/fakeksp.c | 75 +---
src/fft.c | 72 +---
src/filter.c | 60 +--
src/fmac.c | 74 +---
src/homodyne.c | 164 +++-----
src/iter/lad.c | 124 ++++++
src/iter/lad.h | 38 ++
src/join.c | 57 +--
src/linops/finite_diff.c | 1 +
src/linops/someops.c | 52 ++-
src/linops/someops.h | 1 +
src/lowrank/lrthresh.c | 1 +
src/lrmatrix.c | 206 ++++------
src/mip.c | 82 ++++
src/misc/debug.c | 65 +--
src/misc/misc.c | 136 +++++--
src/misc/misc.h | 4 +
src/misc/opts.c | 293 ++++++++++++++
src/misc/opts.h | 59 +++
src/nlinv.c | 98 ++---
src/noise.c | 78 +---
src/noncart/grid.c | 19 +-
src/nrmse.c | 54 +--
src/nufft.c | 105 ++---
src/num/gpuops.c | 3 +-
src/num/lapack.c | 1 +
src/num/sf.c | 77 ++++
src/num/sf.h | 5 +
src/phantom.c | 118 +++---
src/pics.c | 441 +++++++++------------
src/pocsense.c | 113 ++----
src/poisson.c | 129 ++----
src/relnorm.c | 84 ----
src/reshape.c | 55 +--
src/resize.c | 58 +--
src/rsense.c | 122 ++----
src/sake.c | 77 +---
src/sdot.c | 47 +--
src/sense/recon.c | 7 -
src/show.c | 56 +--
src/simu/phantom.c | 93 ++++-
src/simu/phantom.h | 4 +
src/simu/shepplogan.c | 149 +++++--
src/simu/shepplogan.h | 24 +-
src/svd.c | 55 +--
src/threshold.c | 77 +---
src/toimg.c | 3 +-
src/traj.c | 87 +---
src/twixread.c | 118 ++----
src/version.c | 3 +-
src/walsh.c | 82 +---
src/wave.c | 93 +----
version.txt | 2 +-
84 files changed, 2603 insertions(+), 3116 deletions(-)
create mode 100644 debian/README.Debian
delete mode 100644 matlab/imshow3.m
rename update-if-changed.sh => rules/update-if-changed.sh (100%)
rename update-version.sh => rules/update-version.sh (57%)
copy {debian => scripts}/bart_completion.sh (100%)
mode change 100755 => 100644 scripts/grasp.sh
create mode 100644 src/estdims.c
create mode 100644 src/iter/lad.c
create mode 100644 src/iter/lad.h
create mode 100755 src/mip.c
create mode 100644 src/misc/opts.c
create mode 100644 src/misc/opts.h
create mode 100644 src/num/sf.c
create mode 100644 src/num/sf.h
delete mode 100644 src/relnorm.c
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