[med-svn] [perlprimer] 05/06: Fix spelling

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository perlprimer.

commit 939e95a1ccefad67a685ddc85595ec34c502ca45
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 3 14:00:39 2016 +0200

    Fix spelling
---
 debian/changelog              |  1 +
 debian/patches/series         |  1 +
 debian/patches/spelling.patch | 37 +++++++++++++++++++++++++++++++++++++
 debian/perlprimer.1           |  2 +-
 4 files changed, 40 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index 2705b25..f25f0c0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -19,6 +19,7 @@ perlprimer (1.1.21-3) UNRELEASED; urgency=medium
   [ Andreas Tille ]
   * cme fix dpkg-control
   * remove menu file
+  * fix spelling
 
  -- Canberk Koç <canberkkoc at gmail.com>  Sat, 2 Jul 2016 23:54:40 +0300
 
diff --git a/debian/patches/series b/debian/patches/series
index 8161130..d49e310 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 sytaxerrors.patch
 fixarray.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..9f5fce3
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,37 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 2 Jul 2016 23:54:40 +0300
+Description: Fix spelling
+
+--- a/ReadMe
++++ b/ReadMe
+@@ -28,7 +28,7 @@ Perlprimer's current features include th
+ * Ability to add cloning sequences to primers, automatically adjusted to be in-frame
+ * QPCR primer design without manual intron-exon boundary entry
+ 
+-Perlprimer calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters.  To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use default, standard, PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yeild of product when amplified.
++Perlprimer calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters.  To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use default, standard, PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yield of product when amplified.
+ 
+ Perlprimer is written in Perl and requires Perl/Tk.  In addition, for QPCR functionality perlprimer requires the open-source Spidey executable from NCBI.  The program is designed to be cross-platform and has been tested on both Microsoft Windows and GNU/Linux-based operating systems.  Users have also had success using the program under Mac OS X.
+ 
+--- a/ReadMe.txt
++++ b/ReadMe.txt
+@@ -28,7 +28,7 @@ Perlprimer's current features include th
+ * Ability to add cloning sequences to primers, automatically adjusted to be in-frame
+ * QPCR primer design without manual intron-exon boundary entry
+ 
+-Perlprimer calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters.  To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use default, standard, PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yeild of product when amplified.
++Perlprimer calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters.  To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use default, standard, PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yield of product when amplified.
+ 
+ Perlprimer is written in Perl and requires Perl/Tk.  In addition, for QPCR functionality perlprimer requires the open-source Spidey executable from NCBI.  The program is designed to be cross-platform and has been tested on both Microsoft Windows and GNU/Linux-based operating systems.  Users have also had success using the program under Mac OS X.
+ 
+--- a/perlprimer.pl
++++ b/perlprimer.pl
+@@ -3299,7 +3299,7 @@ sub primer_dimer_new {
+ 		}
+ 	}
+ 	
+-	# check for best binding for each possibility that yeilds two or more matched bases together
++	# check for best binding for each possibility that yields two or more matched bases together
+ 	my $last;
+ 	my @unequal_loops;
+ 	foreach my $i (@binding_data) {
diff --git a/debian/perlprimer.1 b/debian/perlprimer.1
index e02cd80..d1cc45a 100644
--- a/debian/perlprimer.1
+++ b/debian/perlprimer.1
@@ -6,7 +6,7 @@ perlprimer \- graphically specify amplicon of DNA or mRNA sequences and design p
 .B perlprimer
 .SH DESCRIPTION
 .B PerlPrimer
-calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters. To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use standard PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yeild of product when amplified. 
+calculates primer melting temperature using J. SantaLucia's extensive nearest-neighbour thermodynamic parameters. To adjust for the salt conditions of the PCR, PerlPrimer uses the empirical formula derived by von Ahsen, et al. (2001) and allows the user to specify the concentration of Mg2+, dNTPs and primers, or use standard PCR conditions. The result is a highly accurate prediction of primer melting temperature, giving rise to a maximum yield of product when amplified. 
 .BR
 PerlPrimer is written in Perl and requires Perl/Tk. In addition, for QPCR functionality PerlPrimer requires the open-source Spidey executable from NCBI. The program is designed to be cross-platform compatible and has been developed and tested on both Microsoft Windows and GNU/Linux-based operating systems. Users have also reported success using the program under Mac OS X. 
 .SH SEE ALSO

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