[med-svn] [vcftools] 07/08: Fix manpage

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository vcftools.

commit 30ec66e5a514931987878ce643d5dde5804caad9
Author: Andreas Tille <tille at debian.org>
Date:   Sun Jul 3 22:21:51 2016 +0200

    Fix manpage
---
 debian/patches/manpage.patch  | 16 ++++++++++++++++
 debian/patches/series         |  1 +
 debian/patches/spelling.patch |  9 +++++++++
 3 files changed, 26 insertions(+)

diff --git a/debian/patches/manpage.patch b/debian/patches/manpage.patch
new file mode 100644
index 0000000..5d1d26b
--- /dev/null
+++ b/debian/patches/manpage.patch
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sun, 03 Jul 2016 22:13:17 +0200
+Description: Fix manpage syntax
+
+--- a/src/cpp/vcftools.1
++++ b/src/cpp/vcftools.1
+@@ -1,7 +1,7 @@
+ .\" Manpage for vcftools.
+-.TH vcftools man page 1 "27 August 2014" "0.1.13" "vcftools man page"
++.TH VCFTOOLS "1" "27 August 2014" "0.1.13" "vcftools man page"
+ .SH NAME
+-vcftools v0.1.13 \- Utilities for the variant call format (VCF) and binary variant call format (BCF)
++vcftools \- Utilities for the variant call format (VCF) and binary variant call format (BCF)
+ .SH SYNOPSIS
+ .B vcftools
+ [
diff --git a/debian/patches/series b/debian/patches/series
index ab12ab9..302b7fc 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 temporary_test_fix.patch
 spelling.patch
+manpage.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
index abcec0d..8dcfcba 100644
--- a/debian/patches/spelling.patch
+++ b/debian/patches/spelling.patch
@@ -44,3 +44,12 @@ Description: Fix spelling
  .br
  .RS 2
  .B vcftools
+@@ -663,7 +663,7 @@ This option is used to extract informati
+ .br
+ .B --recode-bcf
+ .RS 2
+-These options are used to generate a new file in either VCF or BCF from the input VCF or BCF file after applying the filtering options specified by the user. The output file has the suffix ".recode.vcf" or ".recode.bcf". By default, the INFO fields are removed from the output file, as the INFO values may be invalidated by the recoding (e.g. the total depth may need to be recalculated if individuals are removed). This behavior may be overriden by the following options. By default, BCF fi [...]
++These options are used to generate a new file in either VCF or BCF from the input VCF or BCF file after applying the filtering options specified by the user. The output file has the suffix ".recode.vcf" or ".recode.bcf". By default, the INFO fields are removed from the output file, as the INFO values may be invalidated by the recoding (e.g. the total depth may need to be recalculated if individuals are removed). This behavior may be overridden by the following options. By default, BCF f [...]
+ .RE
+ .PP
+ .B --recode-INFO 

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/vcftools.git