[med-svn] [sga] 04/05: Delete duplicated patch (sorry Gert for missing this :-()

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch debian/unstable
in repository sga.

commit e19a4ed1e1aa1f1e10894b23dcd5e4b10a329c32
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jul 5 16:22:32 2016 +0200

    Delete duplicated patch (sorry Gert for missing this :-()
---
 debian/patches/0007-fix-gcc-6.patch | 57 -------------------------------------
 1 file changed, 57 deletions(-)

diff --git a/debian/patches/0007-fix-gcc-6.patch b/debian/patches/0007-fix-gcc-6.patch
deleted file mode 100644
index 6cf498f..0000000
--- a/debian/patches/0007-fix-gcc-6.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-Author: Matei David <matei at cs.toronto.edu>
-Date: Wed, 3 Feb 2016 23:28:04 -0500
-Bug-Debian: https://bugs.debian.org/811664
-Description: Fix compilation with gcc-6 (i.e. -std >= c++11)
-
-diff --git a/src/SGA/rmdup.cpp b/src/SGA/rmdup.cpp
-index cc7727d..5abe0a1 100644
---- a/src/SGA/rmdup.cpp
-+++ b/src/SGA/rmdup.cpp
-@@ -232,7 +232,7 @@ std::string parseDupHits(const StringVector& hitsFilenames, const std::string& o
-     while(!done)
-     {
-         // Parse a line from the current file
--        bool valid = getline(*reader_vec[currReaderIdx], line);
-+        bool valid = static_cast<bool>(getline(*reader_vec[currReaderIdx], line));
-         ++numRead;
-         // Deal with switching the active reader and the end of files
-         if(!valid || numRead == buffer_size)
-diff --git a/src/SuffixTools/STCommon.h b/src/SuffixTools/STCommon.h
-index 13e0769..38d2be5 100644
---- a/src/SuffixTools/STCommon.h
-+++ b/src/SuffixTools/STCommon.h
-@@ -96,7 +96,7 @@ struct SAElem
-         // Masks
-         static const uint8_t ID_BITS = 36; // Allows up to 68 billion IDs
-         static const uint8_t POS_BITS = 64 - ID_BITS;
--        static const uint64_t HIGH_MASK = ~0 << POS_BITS;
-+        static const uint64_t HIGH_MASK = ~0llu << POS_BITS;
-         static const uint64_t LOW_MASK = ~HIGH_MASK;
- };
- 
-diff --git a/src/Util/ClusterReader.cpp b/src/Util/ClusterReader.cpp
-index 5c9460b..6b626e3 100644
---- a/src/Util/ClusterReader.cpp
-+++ b/src/Util/ClusterReader.cpp
-@@ -67,7 +67,7 @@ bool ClusterReader::generate(ClusterVector& out)
- bool ClusterReader::readCluster(ClusterRecord& record)
- {
-     std::string line;
--    bool good = getline(*m_pReader, line);
-+    bool good = static_cast<bool>(getline(*m_pReader, line));
-     if(!good || line.empty())
-         return false;
-     std::stringstream parser(line);
-diff --git a/src/Util/StdAlnTools.cpp b/src/Util/StdAlnTools.cpp
-index b6441eb..7e72101 100644
---- a/src/Util/StdAlnTools.cpp
-+++ b/src/Util/StdAlnTools.cpp
-@@ -119,7 +119,7 @@ std::string StdAlnTools::expandCigar(const std::string& cigar)
-     char code;
-     while(parser >> length)
-     {
--        bool success = parser >> code;
-+        bool success = static_cast<bool>(parser >> code);
-         expanded.append(length, code);
-         assert(success);
-         (void)success;

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/sga.git