[med-svn] r22439 - trunk/packages/macsyfinder/trunk/debian

[Andreas Tille]

Author: tille
Date: 2016-07-08 11:12:08 +0000 (Fri, 08 Jul 2016)
New Revision: 22439

Modified:
   trunk/packages/macsyfinder/trunk/debian/changelog
   trunk/packages/macsyfinder/trunk/debian/macsyfinder.1
Log:
Fix manpage


Modified: trunk/packages/macsyfinder/trunk/debian/changelog
===================================================================
--- trunk/packages/macsyfinder/trunk/debian/changelog	2016-07-08 11:01:44 UTC (rev 22438)
+++ trunk/packages/macsyfinder/trunk/debian/changelog	2016-07-08 11:12:08 UTC (rev 22439)
@@ -7,6 +7,7 @@
   * Add missing Build-Depends texlive-generic-extra
     Closes: #830407
   * Fix short description
+  * Fix manpage
 
  -- Andreas Tille <tille at debian.org>  Fri, 08 Jul 2016 12:28:19 +0200
 

Modified: trunk/packages/macsyfinder/trunk/debian/macsyfinder.1
===================================================================
--- trunk/packages/macsyfinder/trunk/debian/macsyfinder.1	2016-07-08 11:01:44 UTC (rev 22438)
+++ trunk/packages/macsyfinder/trunk/debian/macsyfinder.1	2016-07-08 11:12:08 UTC (rev 22439)
@@ -1,10 +1,9 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.46.2.
 .TH MACSYFINDER "1" "January 2015" "macsyfinder 1.0.2" "User Commands"
 .SH NAME
-macsyfinder \- manual page for macsyfinder 1.0.2
-.SH DESCRIPTION
-usage: macsyfinder [\-h] [\-\-sequence\-db SEQUENCE_DB]
-.IP
+macsyfinder \- detection of macromolecular systems in protein datasets
+.SH SYNOPSIS
+.B macsyfinder
+[\-h] [\-\-sequence\-db SEQUENCE_DB]
 [\-\-db\-type {unordered_replicon,ordered_replicon,gembase,unordered}]
 [\-\-replicon\-topology {linear,circular}]
 [\-\-topology\-file TOPOLOGY_FILE] [\-\-idx]
@@ -23,10 +22,15 @@
 [\-\-log LOG_FILE] [\-\-config CFG_FILE]
 [\-\-previous\-run PREVIOUS_RUN]
 systems [systems ...]
-.PP
-MacSyFinder is a tool for the detection of protein secretion systems
-of diderm bacteria from a protein dataset.
-.SS "positional arguments:"
+.SH DESCRIPTION
+MacSyFinder is a program to model and detect macromolecular systems,
+genetic pathways... in protein datasets. In prokaryotes, these systems
+have often evolutionarily conserved properties: they are made of conserved
+components, and are encoded in compact loci (conserved genetic architecture).
+The user models these systems with MacSyFinder to reflect these conserved
+features, and to allow their efficient detection
+.SH OPTIONS
+.SS positional arguments:
 .TP
 systems
 The systems to detect. This is an obligatory option
@@ -188,15 +192,3 @@
 \fB\-\-config\fR, \fB\-\-sequence\-db\fR, \fB\-\-profile\-suffix\fR, \fB\-\-resextract\-suffix\fR, \fB\-\-e\-value\-res\fR, \fB\-\-db\-type\fR, \fB\-\-hmmer\fR)
 .PP
 For more details, visit the MacSyFinder website and see the MacSyFinder documentation.
-.SH "SEE ALSO"
-The full documentation for
-.B macsyfinder
-is maintained as a Texinfo manual.  If the
-.B info
-and
-.B macsyfinder
-programs are properly installed at your site, the command
-.IP
-.B info macsyfinder
-.PP
-should give you access to the complete manual.