[med-svn] [bioperl] 05/10: Merge tag 'upstream/1.7_rc4'

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch master
in repository bioperl.

commit 40a7b580b89960fcaa080cfa4125fc98551bded4
Merge: 63205c0 baf0367
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Jul 11 21:43:18 2016 +0900

    Merge tag 'upstream/1.7_rc4'
    
    Upstream version 1.7~rc4
    
    # gpg: Signature faite le lun. 11 juil. 2016 21:43:17 JST
    # gpg:                avec la clef RSA 0xC5BD6C8F2295D502
    # gpg: Bonne signature de « Charles Plessy <plessy at debian.org> »
    # Empreinte de clef principale : 7347 1499 CC60 ED9E EE80  5946 C5BD 6C8F 2295 D502

 Bio/Root/Version.pm                           |   2 +-
 Bio/Tools/Analysis/Protein/Mitoprot.pm        | 327 --------------------------
 Build.PL                                      |   7 +-
 DEPENDENCIES                                  |   2 -
 MANIFEST                                      |   2 -
 META.json                                     |  14 +-
 META.yml                                      |  13 +-
 examples/db/getGenBank.pl                     |   2 +-
 examples/db/get_seqs.pl                       |   2 +-
 examples/generate_random_seq.pl               |   2 +-
 examples/searchio/psiblast_features.pl        |   2 +-
 examples/structure/structure-io.pl            |   2 +-
 examples/tk/hitdisplay.pl                     |   2 +-
 examples/tools/gb_to_gff.pl                   |   2 +-
 maintenance/big_split/file_classification.csv |   4 -
 t/Assembly/ContigSpectrum.t                   |   9 +-
 t/LocalDB/Taxonomy/sqlite.t                   |  40 +---
 t/RemoteDB/Taxonomy.t                         |   1 -
 t/Root/IO.t                                   |  24 +-
 t/Seq/PrimarySeq.t                            |   7 +
 t/Tools/Analysis/Protein/Mitoprot.t           |  37 ---
 21 files changed, 56 insertions(+), 447 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bioperl.git