[med-svn] [bioperl] 07/10: Delete previously applied patches.

[Charles Plessy]

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plessy pushed a commit to branch master
in repository bioperl.

commit 95b6743ba2f90151aa2c138bae19ca0c3eee8598
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Jul 11 21:51:40 2016 +0900

    Delete previously applied patches.
---
 debian/patches/BioPerl-1.006924-RT106756.patch | 21 ---------
 debian/patches/fix_examples_perl_location      | 60 --------------------------
 debian/patches/series                          |  3 --
 3 files changed, 84 deletions(-)

diff --git a/debian/patches/BioPerl-1.006924-RT106756.patch b/debian/patches/BioPerl-1.006924-RT106756.patch
deleted file mode 100644
index d9ce3d9..0000000
--- a/debian/patches/BioPerl-1.006924-RT106756.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-From b1c2d3e9b1eb9f5a20f17b36be7659ba2bf642e0 Mon Sep 17 00:00:00 2001
-From: Slaven Rezic <slaven at rezic.de>
-Date: Fri, 8 Apr 2016 08:27:25 +0200
-Bug-Debian: https://bugs.debian.org/825429
-Subject: [PATCH] fix my in my redeclaration (RT #106756)
-
----
- Bio/Tools/Alignment/Consed.pm | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
---- a/Bio/Tools/Alignment/Consed.pm
-+++ b/Bio/Tools/Alignment/Consed.pm
-@@ -1709,7 +1709,7 @@ Recursion is kewl, but this sub should l
- 
- 
- sub reverse_recurse($$) {
--    my ($r_source,my $r_destination) = @_;
-+    my ($r_source,$r_destination) = @_;
-     if (!@$r_source) {
-         return $r_destination;
-     }
diff --git a/debian/patches/fix_examples_perl_location b/debian/patches/fix_examples_perl_location
deleted file mode 100644
index 3ed1dd2..0000000
--- a/debian/patches/fix_examples_perl_location
+++ /dev/null
@@ -1,60 +0,0 @@
-Subject: fix perl location
-Description: wrong shebang perl location
-Author: Olivier Sallou <osallou at debian.org>
-Last-Updated: 02/03/2012
---- a/examples/db/getGenBank.pl
-+++ b/examples/db/getGenBank.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl
-+#!/usr/bin/perl
- #
- # How to retrieve GenBank entries over the Web
- #
---- a/examples/db/get_seqs.pl
-+++ b/examples/db/get_seqs.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl
-+#!/usr/bin/perl
- use strict;
- use vars qw($USAGE);
- use Carp;
---- a/examples/generate_random_seq.pl
-+++ b/examples/generate_random_seq.pl
-@@ -1,4 +1,4 @@
--#!/bin/perl
-+#!/usr/bin/perl
- use strict;
- use vars qw($USAGE);
- 
---- a/examples/searchio/psiblast_features.pl
-+++ b/examples/searchio/psiblast_features.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl 
-+#!/usr/bin/perl
- 
- # Example usage of a SearchIO::psiblast parser of traditional format Blast 
- # and PSI-Blast reports.
---- a/examples/structure/structure-io.pl
-+++ b/examples/structure/structure-io.pl
-@@ -1,4 +1,4 @@
--#!/bin/perl
-+#!/usr/bin/perl
- # Getting  Entry, Chain, Residue, and Atom objects given a PDB file
- 
- use Bio::Structure::IO;
---- a/examples/tk/hitdisplay.pl
-+++ b/examples/tk/hitdisplay.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl
-+#!/usr/bin/perl
- #
- # PROGRAM  : hitdisplay.pl
- # PURPOSE  : Demonstrate Bio::Tk::HitDisplay
---- a/examples/tools/gb_to_gff.pl
-+++ b/examples/tools/gb_to_gff.pl
-@@ -1,4 +1,4 @@
--#!/usr/local/bin/perl
-+#!/usr/bin/perl
- use strict;
- 
- use Bio::Tools::GFF;
diff --git a/debian/patches/series b/debian/patches/series
deleted file mode 100644
index e7a826a..0000000
--- a/debian/patches/series
+++ /dev/null
@@ -1,3 +0,0 @@
-fix_examples_perl_location
-#fix_berkeleydb3_temp_file_creation
-BioPerl-1.006924-RT106756.patch

-- 
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