[med-svn] [python-cobra] branch upstream updated (e296849 -> 191cd73)

[Afif Elghraoui]

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afif pushed a change to branch upstream
in repository python-cobra.

      from  e296849   Imported Upstream version 0.4.1
       new  191cd73   Imported Upstream version 0.4.2~b1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .gitignore                           |   1 +
 INSTALL.md                           |  11 +--
 README.md                            |   7 +-
 appveyor.yml                         |  20 +++--
 appveyor/build_glpk.py               |   4 +-
 cobra/VERSION                        |   2 +-
 cobra/core/DictList.py               |   4 +-
 cobra/io/json.py                     |   4 +-
 cobra/io/mat.py                      |  10 ++-
 cobra/io/sbml.py                     |   5 ++
 cobra/manipulation/modify.py         |  52 +++++++++++-
 cobra/solvers/gurobi_solver.py       |   5 +-
 cobra/solvers/mosek.py               |   2 +
 cobra/test/flux_analysis.py          |  42 ++++++----
 cobra/test/manipulation.py           |  25 ++++++
 cobra/test/solvers.py                |   2 +-
 documentation_builder/loopless.ipynb | 156 +++++++++++++++++++++++++----------
 ez_setup.py                          |  77 ++++++++++++-----
 setup.py                             |   4 +-
 19 files changed, 318 insertions(+), 115 deletions(-)

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