[med-svn] [libssw] 01/02: debian/tests: use corrected test data
Afif Elghraoui
afif at moszumanska.debian.org
Tue Jul 19 10:52:08 UTC 2016
This is an automated email from the git hooks/post-receive script.
afif pushed a commit to branch debian/jessie-backports
in repository libssw.
commit f731781e0f604fc75b4bded49348c2a9784c64b2
Author: Afif Elghraoui <afif at debian.org>
Date: Tue Jul 19 03:14:13 2016 -0700
debian/tests: use corrected test data
---
debian/tests/run-example.out | 480 +++++++++++++++++++++----------------------
1 file changed, 240 insertions(+), 240 deletions(-)
diff --git a/debian/tests/run-example.out b/debian/tests/run-example.out
index 7fedb30..1e6ef03 100644
--- a/debian/tests/run-example.out
+++ b/debian/tests/run-example.out
@@ -74,335 +74,335 @@ target_name: chr2
query_name: chr1
optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971
-Target: 4437430 TTGATTCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATGC 4437489
- ||*||**|***||*********|*|*******|***|*||***|***|*******|****
-Query: 9 TTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACTACACAAT 68
+Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488
+ ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| |||
+Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56
-Target: 4437490 TAAGCTAATTAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCCTCCTCC 4437549
- |*******||***|*|****|**|||****|******|*|*****|*||******|*|**
-Query: 69 TCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAG 128
+Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543
+ |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**|
+Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104
-Target: 4437550 CTCCTCCTAGAAGCCTTTAAAATTCATGCATCATTTTAAAAGTTTTGAAATTTTTCAAGA 4437609
- *******|*******|***|||*|************* ******|*****||*|*|***
-Query: 129 GAAAAAATTATTTAATAATAAAATTTAATTGGCAAAA--TGAAGGTATGGCTTATAAGAG 186
+Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599
+ ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| ||
+Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156
-Target: 4437610 TTATGTTTAAGTATATTAAATATTTTGTTCAGTCATCCCAATTAGTTTTCAATGGCCCTT 4437669
- |**|*|***|*|*|*||*|*|*|*****|||*|**||**|||*|*|*****|********
-Query: 187 TGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGA 246
+Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655
+ ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| ||
+Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200
-Target: 4437670 TCCATTTAAAGAGTTTGGACATTCCATATAAAAAAGACAATGTCATCTACATTTTCTTTG 4437729
- |*|**|*|||*****|**|**|**|||*||*|******||****|**|*||||**|*|**
-Query: 247 TTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGT 306
+Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707
+ |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |*
+Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254
-Target: 4437730 TTTTCTTAATTATATCTTTTCCTTTTTACAAATTTCTTAAAAATAGGTGTAAGATCTCTG 4437789
- *||**||**||***********|*******|***|**|****|*|**|************
-Query: 307 ATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCATAGAACA 366
+Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752
+ ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*|
+Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312
-Target: 4437790 ATTTAACCTATGTGCGTCTTAATTTTTCAGCTTCTCTGTCATTTTATTAGATGTTTTTAT 4437849
- ********|*|*|*|*|**|************|*||**|||*|***|*|||****|***|
-Query: 367 CCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATGGTGATT 426
+Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806
+ ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*|
+Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363
-Target: 4437850 TGTTTTTAATTACTAAATTAATCTTAATCTATGCTTATTATATCATTCTCCATTACGTTA 4437909
- |*********||*||||*|*||***|*******|**|**|*|||**||||*|****||**
-Query: 427 TAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGT 486
+Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846
+ | *||*||||||| ||**| | |||||||| |*||| |||
+Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417
-Target: 4437910 TGGATACAACAACTTGGTGAATGTTTCTGAGATTAACACTAAAAATATTTAACAATCTCT 4437969
- **|**********|**|||**|||*|*|*|||***|*|***|*||*||||*||***|||*
-Query: 487 GTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACTCCCTCC 546
+Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898
+ ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**|||
+Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475
-Target: 4437970 CTCATTTTTATCTTTTCTTTCTTTTTCTCTTTGTCTTTCTCACTCTCTATTTATCCTGTT 4438029
- *|*|*|*|*|***|*|**||*|*|||*||*||**|||||********|*|||*||***|*
-Query: 547 ATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCTCTCCTA 606
+Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949
+ | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|**
+Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526
-Target: 4438030 ACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTTTTTTTAATATTTAAATAATGCTTCTG 4438089
- *****||***|||**|**|||****|**********|***|***|**||*|***|*****
-Query: 607 TTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAACAAAAT 666
+Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004
+ *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *|
+Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581
-Target: 4438090 TCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGTGAGATGGAGAATCTTTATTAAGATAG 4438149
- ***||*|***********|*|*|**|****|****|*| |*****||****||**|*|
-Query: 667 ATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAA---ATGCCATTATCCAAAGTGG 723
+Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063
+ ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**||
+Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627
-Target: 4438150 AAGACAAAGAGGGGATGATGTGGACACTTTCAGGATGTGGAATGGTTACATACATTATTC 4438209
- ****|*|*****|**************|*******|*********||**|***|**|*|*
-Query: 724 TTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGAGTA 783
+Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123
+ *|**|||*|***|||||| |**|*| || || || | ||*||*|*||
+Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668
-Target: 4438210 TGTTATCACAAGGTTAGCTAAACTCTCTTTCATAAAATCTCTCTTGTTTCTTACTCCCTA 4438269
- |*|||****|****||*|**************|****||**|*****||*******|*|*
-Query: 784 TATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGACTTG 843
+Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173
+ ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| ||||
+Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723
-Target: 4438270 AATCTCAAATAAGTGACTAAAAAATGCCTGGATGACCCCAAACAGTAAGAATAGCTTGTA 4438329
- ******||***|*******|****************|****|***|***|**|***|**|
-Query: 844 TCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCTTAA 903
+Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221
+ || || || |||| || || || |||*|||| |||| |*|| || ||| ||
+Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774
-Target: 4438330 GGTCTCTGAAGATGTTATCTTTTG-CCCTGGGAAGGTGGATTCCTATACTAACACCTGCA 4438388
- ***|*|*********|***||*** ***|****|**||*****||**|*|*********|
-Query: 904 TTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTCTAA 963
+Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278
+ || || |*|*|*||*||||| | ||*|| || |||*|*|| | || ||
+Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816
-Target: 4438389 CTTGAAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTACCACTGCAGGTAGCAT 4438448
- *||***|***|**|**|*|||||*******|*****|***********************
-Query: 964 TTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1023
+Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335
+ |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||*
+Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870
-Target: 4438449 GGGACACTTCTTTATTATTCACAAGAAGAGTTGCTTAATTTTTTCGTTTCCTGATGCTTT 4438508
- ******************** ************************************
-Query: 1024 ---- 1079
+Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392
+ |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| ||
+Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913
-Target: 4438509 CAGCATGGCCCCTTTGGCAGAGGACATTTAATTCTTCTGGGCTTCAGGGAACAAAAGTTG 4438568
- ******************** *************************************
-Query: 1080 --- 1136
+Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450
+ *|| | ||*||| ||*|*||||||||| || *|||| | *|| *|||
+Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954
-Target: 4438569 TGCTTACTTTGCCATTGGAG 4438588
- ********************
-Query: 1137 1156
+Target: 4438451 GACACTTCTTTATTATTCAC 4438470
+ *||||| |*|||*|||||
+Query: 955 --TACTTC-TAATTTTTCAC 971
target_name: chr3
query_name: chr1
optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998
-Target: 680970 TTAAATTGTCAACATGGTATATATGAAATGAATTGGGTTTATAATAGTAAACCAATCTTG 681029
- ||||*****************|||**|**|******||*******|****||*|**|***
-Query: 9 TTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACTACACAAT 68
+Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026
+ || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |*
+Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53
-Target: 681030 CATTCCTAAAATAAATCCTATTTAGTTATCGTGTGTTATTTTCTTAATACAGTGTTGGAT 681089
- **|**||****|***|***||*****|*||*|****|*||*|||***|**********|*
-Query: 69 TCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAG 128
+Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070
+ *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |*
+Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111
-Target: 681090 TAAGTTTGCTATTTTTTATTTTAAAATTTTACATTATTTTCTTCAGTGATATTGACCTGT 681149
- *||********||**|*||***|***** *|*******|**||**||**********
-Query: 129 GAAAAAATTATTTAATAATAAAATTTAA----TTGGCAAAATGAAGGTATGGCTTATAAG 184
+Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126
+ |||| ||*||| |*|||**||*| || |||*||**||||| |||| ||
+Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157
-Target: 681150 AGTTTTCTTTCATTATACTGTTTTATCAGATTTAGGTATCAGTGTTATAGTTTCTTCATG 681209
- |||*||*|***|||*|**|***|*******|****||***|******|*|******||*|
-Query: 185 AGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACCCAAG 244
+Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180
+ |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| |
+Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207
-Target: 681210 AAAGGAATTAAGATGTTTTCCTTCCCTTTCAATGTTCTGAATAATCATACAGCATTATGA 681269
- *|*****|*||******|*|**|*****|**||*|||***|*****|*|*****|*|***
-Query: 245 GATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACAT 304
+Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233
+ *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*||
+Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263
-Target: 681270 CTATCTGCCATTTAAATCTTTAGAATAATTACCTTGTGAAACTATGTGGGCTTGGTGCTA 681329
- *|||******|||********|*******|******|*****|************|***|
-Query: 305 GTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCATAGAA 364
+Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280
+ | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| |
+Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318
-Target: 681330 TTTTGTGTAGTATTTATCTAATTGTTTCCTATATTTCTTCTATGAAATTGGTTGATTTAA 681389
- ******|***|*|||***||||*****|****|*|*****|****|||||*******|*|
-Query: 365 CACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATGGTGA 424
+Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334
+ *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***|
+Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370
-Target: 681390 TCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATTAAT 681449
- |*|**|*||***||||||**|||********|**|**||***|****|****|||*|**|
-Query: 425 TTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAACTGGT 484
+Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386
+ *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| |||||
+Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426
-Target: 681450 TCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAAAGGA 681509
- ***|*****|***|*****|*****|*||***************|***************
-Query: 485 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACTCCCT 544
+Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446
+ ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| |
+Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469
-Target: 681510 GGTTTCCTGTCATTTTAAAATTCTCTGTTGTTTTAATAGTAACTTGTTTCTTATTATTTA 681569
- ***|***|*|||***||***||*|||*||***||*****|***|**|*|**|*|***|**
-Query: 545 CCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCTCTCC 604
+Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505
+ ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****||||
+Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517
-Target: 681570 TAACTTTATATATTTGTACTTTTTCCTTTTTTATCAAATGAACTGAGTTTTAACATCGCA 681629
- ||****|*|***||**|****||**|*|*******||||*|****|*****||*|* **|
-Query: 605 TATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA-CAA 663
+Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547
+ | |||| | |||| || *| || |||| |||| |*||*|||| *|*
+Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571
-Target: 681630 TTTAATTTTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAATTGTCAGAAAT 681689
- **||****|**|*|*|***|*|||***|||*******||***********|***|*****
-Query: 664 AATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGG 723
+Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596
+ *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| |||||
+Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625
-Target: 681690 CTCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTTTAT 681749
- *|||**||*******|****|**|****|*|*****|**|*|*||**||****|******
-Query: 724 TTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGAGTA 783
+Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636
+ ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| ||
+Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683
-Target: 681750 GAACTTTAAATTACAGATCAGATATTTTTAGTAAAATTTTATCCAAACTAAGATGCAATA 681809
- *|******||********|***|*|****|*******|***|***||*|*|***|***|*
-Query: 784 TATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGACTTG 843
+Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690
+ |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*||
+Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735
-Target: 681810 TGAGTATAATCACTGATTCAAAAAGCTTCCTTTAGTGAGCATGAAATATCTCACTATTTT 681869
- |*|**|*|***|****|**|*******|**|*****************|*|*|*|*||**
-Query: 844 TCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCTTAA 903
+Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748
+ *||*|*|||||| |||| |*| | ||| || |||||**| || *|
+Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774
-Target: 681870 AATTTTAATATTGATTGTGTGTTAAA--ATAATAATAATTGCATTATATTATTGATAATG 681927
- ********|**||**|***|*****| *|***|****|**|**|**|*|*|***|****
-Query: 904 TTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTCTAA 963
+Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803
+ |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*|||
+Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827
-Target: 681928 TGTATTCTTGTCATGTTTCCATTCTTACTGGAAATGCCTCCAGTGTTTCTCCATCAAATA 681987
- |*|*|***|*|*********|*|**********|*************************
-Query: 964 TTTTTCACTTTACATCACATAATGAATGGATCCAAATA - 1022
+Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861
+ |||| |*|*|**|*| || |||| ||| || || *|*| || |||| |
+Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867
-Target: 681988 GTATACTGGCTCTAAGACTAATTTAAAGGACAAGATGGCCAACTAGACACAGCCAGGAAG 682047
- ***********************************************************
-Query: 1023 - 1081
+Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914
+ ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*|
+Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916
-Target: 682048 CACTGTTCCTACCCCCAAAAGACCAAAGTTTCAAGTAAACCAACATAACTTGGACAGATC 682107
- ************** *******************************************
-Query: 1082 --- 1138
+Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971
+ |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*|
+Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964
-Target: 682108 TTCAAAGAGAAAATGCCCAGTGGATGAAGATGTGAT 682143
- ************************************
-Query: 1139 1174
+Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002
+ *|||| |*|||||*||| || |*|||*||*||
+Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998
target_name: chr4
query_name: chr1
optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001
-Target: 47000 AAACATCTTATAGCTACTGGATTCTTTTTTGCCTATGTATTTATATATGTGCTGTATCTA 47059
- |||||**|||********|***|**|**|*******||***||***|*************
-Query: 2 AAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACT 61
+Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050
+ |||||**|| ||*||*|| || | *|*| || ||||||| || || || |
+Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50
-Target: 47060 TGTAATGTCTATTTTTATAAAGCTCTAATTGACCTAGAGGAAAATGAGTTTTTGAATCAA 47119
- ****|**||||**|||**********|*******|**|***|******|*|*|** *|
-Query: 62 ACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTT---TA 118
+Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104
+ ||| || |||***||| |||| |||| |||| || ||| ||
+Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89
-Target: 47120 ATATTTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAAGTTCACATGACTAATCATTG 47179
- **|****|*|*|***||******||***|***|**|****|***|*||||**********
-Query: 119 GAAAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCT 178
+Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159
+ || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| |
+Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138
-Target: 47180 AGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAGATGTTAAAATATACATTTTT 47239
- ***||*|********||******||****|||**|**||****|**|||||*********
-Query: 179 TATAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACA 238
+Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219
+ || |||| ||||||| || |*|||||*||||*|*||
+Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170
-Target: 47240 GTTCAGGGTTAAAGGATTGTTCTGAATTAGATAAGATAAAGCTAAAAGTTTAAACAAGTT 47299
- ****|||*||*****|*****|********||*|**||*|******|**|*|||*****|
-Query: 239 CCCAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCAT 298
+Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264
+ ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*|
+Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226
-Target: 47300 ATAAAAAGTTTCTATAAAATTCATCTTGCCAAAGAAATTTTGTCCATGAACATTAAATTA 47359
- **|*|****|||**|****|**|********|**|**|****|*|**|***|********
-Query: 299 TCACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGC 358
+Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312
+ ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**||
+Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284
-Target: 47360 CGAAAGGTATTATATGTTTTTTTGGTAAATTAAGCATTTAAATAATAGCACAACAAGGTA 47419
- **|*|*********|*||||||****|********||*****|*||*****||****|*|
-Query: 359 ATAGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAA 418
+Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365
+ | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*|
+Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335
-Target: 47420 CTCTTAAGGCACTAATCTGCTCTTTAGCAAAATTTGTAAAGTGTTATAAACGGGTTTTAC 47479
- ***|*|****||*||*************|**|*****|*******|*|*|***||*|***
-Query: 419 TGGTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTA 478
+Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419
+ ||*| *||*|||| |||||**|| ||||*|||*|**||||
+Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378
-Target: 47480 TTTTGTAAATTTTTTGAAACAATTGTGGCAAAATAAATAACATGGTAATCTGGAATTCTA 47539
- **|*||***|*|*|*********||||******|**|**|****|**|*****||||**|
-Query: 479 ACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCA 538
+Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471
+ *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*|
+Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434
-Target: 47540 TTTCATAACATCAAGTGTTTTAAACCTCTAACATTTCTTCCCAAAATCAAACTTCAGTTT 47599
- *|*|*|******|**|******|**||*|****||||*|**|*****|***||****|||
-Query: 539 CTCCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTT 598
+Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525
+ | | |**|||| *||*||||||*|*||***||||| |***|||| ||||
+Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484
-Target: 47600 CAAAATTGTCTTTCCTCGTGCCTGACTTTTGAATGCTACAGAGGGCCCCTGGAGTATCCA 47659
- |*****|*|***|***|*|*|*|**|*||***||***|*|*|*****|*******|****
-Query: 599 CTCTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAAT 658
+Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575
+ *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*||||
+Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536
-Target: 47660 AAAGAGAGGTAAACTGGATTATTTGACATATTTAGTTACATG--GGATTGCCAATCTTCT 47717
- ||**|*|**||*|**|******||***|***|||*****|** **||**|*********
-Query: 659 AACAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAA 718
+Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620
+ | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*|||
+Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591
-Target: 47718 TTAGGTTATATAGGTTATATTTTGATAAATATTCTATAGGTTATATTTTGATAAATGATA 47777
- ***||||*|*|||******|**||***|***||**|||**|||*|*|*|**|*||**|*|
-Query: 719 AGTGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAA 778
+Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669
+ || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**|
+Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643
-Target: 47778 CTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAATT 47837
- ********|*****|*|**|*|*******|****|**|*|****||***|*||**|****
-Query: 779 GAGTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGG 838
+Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728
+ ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| ||||
+Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691
-Target: 47838 AAGGTTTTTATGTTAAGTTATTGTAAACCACAGAGATTATCAAACTTCTTTGTCAACTGT 47897
- |****|***************||||******|*|*****|********||||**|****|
-Query: 839 ACTTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAAT 898
+Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776
+ |||||| ||***|| || ||| | *||||*||| |*||**||||**|| ||
+Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747
-Target: 47898 GTTTCTGACTATAACTACCCTGGACATTTTGTTATTCAAAGACAATTGTCTTGTTTAGAT 47957
- *||**|*||*********|*|*******|**||*|***|***********|***|****|
-Query: 899 CTTAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACT 958
+Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836
+ |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || ||
+Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790
-Target: 47958 CCTTTTCAAGAGATAGTTTATAAGAAGCTACAGAACTGTGACAGGTGCTCTCAAATGCAG 48017
- *||**|*******|*******|***|* |**|****|***|*******************
-Query: 959 TCTAATTTTTCACTTTACATCACATAA-TGAATGGATCCAAATA 1017
+Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878
+ |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*|
+Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848
-Target: 48018 TTTTCCAAATAACTTTGGAGATCATGACATTGAAATAAAGTAAAACATACAAGACTCATG 48077
- ************************************************************
-Query: 1018 1077
+Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935
+ |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*|||
+Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894
-Target: 48078 AAGAGCTAAAATGTTCACAAATATCAAGCAGAACAAGGGTTAACTAAATGGACTGAACTA 48137
- ***************************** ******************************
-Query: 1078 - 1136
+Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993
+ || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*|
+Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939
-Target: 48138 ATAGAAAACTGAAATATTTTTTTTTTACTTATGGTTGGACGATTGCTGATTCTTGTTTTG 48197
- *********************** ***********************************
-Query: 1137 -- 1194
+Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048
+ ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| |
+Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986
-Target: 48198 TTTTTCAGAGTCAAGG 48213
- ****************
-Query: 1195 1210
+Target: 48049 GAA---AT--AAAGTA 48059
+ ||| || ||| ||
+Query: 987 GAATGGATCCAAA-TA 1001
target_name: chr5
query_name: chr1
optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974
-Target: 8806 AATGGCCAGGGCACTGAGGAGCTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTACCA 8865
- |||*||||*|*||**|**|***|**|****|***|******|*|****|***||**|***
-Query: 11 AATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACTACACAATTC 70
+Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863
+ |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*|||
+Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64
-Target: 8866 TTTCAGTGAGGCCATTCTCCA--AAAACTCTCTCCATCTTATTTCTTGGGGAAAGAGTTC 8923
- |**|**|*************| ****|**||****|**|*|*|*||*|**||*******
-Query: 71 TAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGA 130
+Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911
+ ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| |
+Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120
-Target: 8924 TTCTACTTACAATATGATCAACCTGATTAAGAATATATTGGTTTCTATAACTGTGATGCA 8983
- ****|*|****|*******||**|*|||***||*||***|||*|***|*|******||**
-Query: 131 AAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTATAAGAGTGTT 190
+Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955
+ *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| *
+Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179
-Target: 8984 GATTATAACTATACAAATGCCAATTACCAGAAGCTAAGCCACCCTGATTCCAAAATATAG 9043
- *********|*|*||*******|*|**|*|*****||************||||****|**
-Query: 191 TTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCT 250
+Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013
+ || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|*
+Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226
-Target: 9044 TCTCACATTTCATGGTTTCCTGGTATCAGAAATCCCTATGAGCCTGAGATTTTTTCCCTT 9103
- ****|***********||*****|***|************|***|*|******|****|*
-Query: 251 GTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTC 310
+Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063
+ | |*||**|*||||| *||||| *||||| || ||| |**||||| || *||||
+Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282
-Target: 9104 AAAGCAAATACTGAAGATAAGAAACCAATTAATTTCATTGTTGCTATCTTGTATCCAATG 9163
- |*************|*||*||*|***|******|***|******|**|*|**|*|****|
-Query: 311 ATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCATAGAACACCCG 370
+Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109
+ *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| ||||
+Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335
-Target: 9164 GCATAAAATCTATACTAACTTGATTAGAAATTCTGCCAATGAACAACTTTATTGTTTTGA 9223
- |*******|**|||*|******|*||****|**|*|********|***|**|**|||***
-Query: 371 GGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATGGTGATTTAAC 430
+Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147
+ |||*||| ||*|| | |||| ||| *||| *||||| |**|||
+Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393
-Target: 9224 GTGATGAAGCCCCATTTGAGAATATAGGCTCAATGGCCTTGCTCTTAACTGTTCTCTATG 9283
- *******|******||****||***|*||***|***|*|***|||**|************
-Query: 431 AAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGT 490
+Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197
+ ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*|
+Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448
-Target: 9284 CAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTGAATACATTGATTTAAATAC 9343
- **||***|*|*|*******|***********|*|||*|***|||*********|**|||*
-Query: 491 GTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACTCCCTCCATAA 550
+Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229
+ | |||||| ||||*|| | || | ||| |*||*||| ||
+Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507
-Target: 9344 ATAGATATATAAATAGATATTTAAATATGCAATATATATGGATACTTTATATATTGATTT 9403
- ||*******||******|*|||*****|*|**|*** |*|*|**|*|*|*|*|****||
-Query: 551 ATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCC--TTGCTCTTCTTTCTCTCCTATT 608
+Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270
+ |||****| |||| |*|*|***|||*| ||*|*| ||| ||
+Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562
-Target: 9404 AAACATTTTCCTCTCATAGATGAAAAATCACTCTAACATGTATTGATGGCTTCACAAGAA 9463
- *******||*|**|******|*|*|||**|*****|****|||*||******||*||*|*
-Query: 609 GCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAACAAAATAT 668
+Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329
+ *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*|
+Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615
-Target: 9464 ATCATTTACAGAAAATAATTGCATATGATACAGTGTTTGTGCCAAAATGTATTCATGGCT 9523
- |*****|**|*****|*|*|****|*|*|||******||*****|*****|*|**|****
-Query: 669 AGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC 728
+Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383
+ *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*|||
+Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673
-Target: 9524 TTAAAAACTTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTG 9583
- |**|*|***|*|*****|***|****|****|*|***|********||||**|**|**|*
-Query: 729 TAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGAGTATATTA 788
+Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421
+ | | || |||| ||||| |*|| |||| ||||*||| |||| ||
+Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730
-Target: 9584 TTTTCTTGCTAAGTTTGAGCTGCTTATAGATGATGGATATTGACC-CCTTATAGATGTTG 9642
- **|******||***||**|***|**|****||******|****** |***|****|****
-Query: 789 CATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGACTTGTCAAC 848
+Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473
+ || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*|
+Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778
-Target: 9643 GATATTGACCCCTTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGC 9702
- *|***|*|**|**|*|*|***************||******|***|*|*******|***|
-Query: 849 AAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCTTAATTACC 908
+Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531
+ ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*||
+Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830
-Target: 9703 ACACTGTTGATTGTTTCCTTTGCTGGGTAGAAGTTTTTTGGTTTGATGTAATCCTATTTG 9762
- *|**|*|**|||*|||**|****|****|*|*||***|********|*********|||*
-Query: 909 CCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTCTAATTTTT 968
+Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591
+ ||*|*||||**||||*| || |*|| |||||**||*|| | |||
+Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869
-Target: 9763 TTTAGTTTTACTTTTGTTGCTTGCACTTTTGGTGTTAAGTCCAAAAGAAAATTGCAAACA 9822
- *****|****|***|**| *******|*****|*************************
-Query: 969 CACTTTACATCACATAAT---GAATGGATCCAAATA 1025
+Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650
+ *||| || |||*| || *||**||| || ||| ||*|| | ||| |
+Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906
-Target: 9823 CCAATGTCGTGTAATTTTTACTCTCTGTTTTCTTCTGGTAGTTTTAGAGCAAGTTTATCC 9882
- ************* **********************************************
-Query: 1026 - 1084
+Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706
+ |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *||
+Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957
-Target: 9883 AACCTGTGGTCTGTGGGC 9900
- ******************
-Query: 1085 1102
+Target: 9707 TGTTGATTGTTTC-CTTT 9723
+ |**|*||| |||| ||||
+Query: 958 TTCTAATT-TTTCACTTT 974
--
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