[med-svn] [phyml] 07/07: New upstream version

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository phyml.

commit 37c0958d151dc5f700090683702405839b526479
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jul 20 09:39:16 2016 +0200

    New upstream version
---
 debian/changelog                           | 3 ++-
 debian/patches/no-configure-ac-date        | 4 ++--
 debian/patches/no-stdc++.patch             | 2 +-
 debian/patches/sse_only_if_supported.patch | 4 ++--
 4 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index e7a610d..5ad3de9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-phyml (3:3.2.0+dfsg-3) UNRELEASED; urgency=medium
+phyml (3:3.2.20160530+dfsg-1) UNRELEASED; urgency=medium
 
   * Team upload
 
@@ -6,6 +6,7 @@ phyml (3:3.2.0+dfsg-3) UNRELEASED; urgency=medium
   * autopkgtest added
 
   [ Andreas Tille ]
+  * New upstream version
   * Add missing Depends: openmpi-bin
   * Use compression options in d/watch
 
diff --git a/debian/patches/no-configure-ac-date b/debian/patches/no-configure-ac-date
index f2218ad..0ee4163 100644
--- a/debian/patches/no-configure-ac-date
+++ b/debian/patches/no-configure-ac-date
@@ -9,8 +9,8 @@ Description: Enable reproducible build based on version number
  #                                               -*- Autoconf -*-
  # Process this file with autoconf to produce a configure script.
  
--AC_INIT([PhyML],esyscmd([sh -c "date \"+%Y%m%d\" | tr -d '\n'"]),[s.guindon at auckland.ac.nz])
+-AC_INIT([PhyML],esyscmd([sh -c "echo "3.2." | tr -d '\n' ; date \"+%Y%m%d\" | tr -d '\n'"]),[guindon at lirmm.fr])
 +AC_INIT([PhyML],esyscmd([sh -c "dpkg-parsechangelog | egrep '^Version:' | cut -f 2 -d ' ' | tr -d '\n'"]),[s.guindon at auckland.ac.nz])
  AM_INIT_AUTOMAKE([foreign])
  m4_ifdef([AM_SILENT_RULES], [AM_SILENT_RULES])
- 
+ AC_CONFIG_MACRO_DIR([m4])
diff --git a/debian/patches/no-stdc++.patch b/debian/patches/no-stdc++.patch
index 4a000ef..aaccbe7 100644
--- a/debian/patches/no-stdc++.patch
+++ b/debian/patches/no-stdc++.patch
@@ -4,7 +4,7 @@ Description: Do not uselessly link against libstdc++
 
 --- a/configure.ac
 +++ b/configure.ac
-@@ -110,7 +110,7 @@ AS_IF([test "x$enable_win" = "xyes"],[CC
+@@ -112,7 +112,7 @@ AM_CONDITIONAL([WANT_WIN], [test "$enabl
  AC_ARG_ENABLE([beagle], [AS_HELP_STRING([--enable-beagle], [Compute likelihoods using BEAGLE library.])], [beagle=yes],[beagle=no])
  AS_IF([test "x$enable_beagle" = "xyes"],[PKG_CHECK_MODULES(BEAGLE, hmsbeagle-1)])
  AS_IF([test "x$enable_beagle" = "xyes"],
diff --git a/debian/patches/sse_only_if_supported.patch b/debian/patches/sse_only_if_supported.patch
index 2b0fe27..b4bd66d 100644
--- a/debian/patches/sse_only_if_supported.patch
+++ b/debian/patches/sse_only_if_supported.patch
@@ -7,7 +7,7 @@ Description: Verify architecture whether we comiple on i386 or amd64 and
 
 --- a/configure.ac
 +++ b/configure.ac
-@@ -16,6 +16,16 @@ AC_CANONICAL_HOST
+@@ -17,6 +17,16 @@ AC_CANONICAL_HOST
  
  AC_PROG_CC([gcc])
  
@@ -24,7 +24,7 @@ Description: Verify architecture whether we comiple on i386 or amd64 and
  
  # Checks for libraries.
  AC_CHECK_LIB([m], [log])
-@@ -81,7 +91,7 @@ AC_ARG_ENABLE([gprof],
+@@ -82,7 +92,7 @@ AC_ARG_ENABLE([gprof],
                                [Remove optimization options and add profiling informations.])])
  AS_IF([test "x$enable_gprof" = "xyes"],
        [CFLAGS="-ansi -pedantic -Wall -std=c99 -O0 -g -pg"],

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