[med-svn] [ncbi-vdb] 10/10: Use debian packaged libs

[Andreas Tille]

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tille pushed a commit to branch master
in repository ncbi-vdb.

commit 5b562fb5a40344ac42ba2f4712f77d143092a537
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jul 20 17:30:10 2016 +0200

    Use debian packaged libs
---
 debian/patches/series                         |  1 +
 debian/patches/use_debian_packaged_zlib.patch | 23 +++++++++++++++++++++++
 2 files changed, 24 insertions(+)

diff --git a/debian/patches/series b/debian/patches/series
index 00fb80b..872e970 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@ find_hdf5_serial.patch
 find_ngs-sdk.patch
 skip_failing_test.patch
 fix_install_target.patch
+use_debian_packaged_zlib.patch
diff --git a/debian/patches/use_debian_packaged_zlib.patch b/debian/patches/use_debian_packaged_zlib.patch
new file mode 100644
index 0000000..8e35018
--- /dev/null
+++ b/debian/patches/use_debian_packaged_zlib.patch
@@ -0,0 +1,23 @@
+--- a/libs/Makefile
++++ b/libs/Makefile
+@@ -35,7 +35,6 @@ include $(TOP)/build/Makefile.config
+ # default
+ #
+ SUBDIRS =    \
+-	ext      \
+ 	kfc      \
+ 	klib     \
+ 	kproc    \
+--- a/libs/ncbi-vdb/Makefile
++++ b/libs/ncbi-vdb/Makefile
+@@ -100,9 +100,7 @@ VDB_LIB_CMN =    \
+ 	klib         \
+ 	kproc        \
+ 	$(LIBKQ)     \
+-	kfc          \
+-	bz2          \
+-	z
++	kfc
+ 
+ VDB_LIB_RD =              \
+ 	align-reader          \

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