[med-svn] [ncbi-vdb] branch upstream updated (4a7634b -> e3d3949)

Andreas Tille tille at debian.org
Wed Jul 20 15:30:44 UTC 2016


This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository ncbi-vdb.

      from  4a7634b   Imported Upstream version 2.6.3
       new  cd33d97   Imported Upstream version 2.7.0+dfsg
       new  e3d3949   Imported Upstream version 2.7.0+dfsg

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |     4 +
 CHANGES                                            |    18 +
 CHANGES.md                                         |    21 +-
 build/.gitignore                                   |     7 +-
 build/MSVC/2010/.gitignore                         |     3 -
 build/MSVC/2010/bz2.vcxproj                        |    38 -
 build/MSVC/2010/dll-project.props                  |    46 -
 build/MSVC/2010/exe-project.props                  |    54 -
 build/MSVC/2010/kapp-md.vcxproj                    |    48 -
 build/MSVC/2010/kapp.vcxproj                       |    39 -
 build/MSVC/2010/ktst-md.vcxproj                    |    41 -
 build/MSVC/2010/ktst.vcxproj                       |    31 -
 build/MSVC/2010/lib-project.props                  |    45 -
 build/MSVC/2010/load.vcxproj                       |    35 -
 build/MSVC/2010/loader.vcxproj                     |    37 -
 build/MSVC/2010/ncbi-vdb-dll-md.vcxproj            |  3425 ----
 build/MSVC/2010/ncbi-vdb-dll.filters               |  1348 --
 build/MSVC/2010/ncbi-vdb-dll.vcxproj               |  3422 ----
 build/MSVC/2010/ncbi-vdb.sln                       |   192 -
 build/MSVC/2010/ncbi-vdb.vcxproj                   |  3389 ----
 build/MSVC/2010/ncbi-vdb.vcxproj.filters           |  1348 --
 build/MSVC/2010/ncbi-wvdb-dll-md.vcxproj           |  3026 ----
 build/MSVC/2010/ncbi-wvdb-dll.vcxproj              |  3016 ----
 build/MSVC/2010/ncbi-wvdb.vcxproj                  |  2986 ----
 build/MSVC/2010/ncbi-wvdb.vcxproj.filters          |  1210 --
 build/MSVC/2010/ngs-c++.vcxproj                    |    34 -
 build/MSVC/2010/pileup_dev.vcxproj                 |    37 -
 build/MSVC/2010/test-agrep.vcxproj                 |    37 -
 build/MSVC/2010/test-asm.vcxproj                   |    34 -
 build/MSVC/2010/test-cc.vcxproj                    |    34 -
 build/MSVC/2010/test-dependencies.vcxproj          |    38 -
 build/MSVC/2010/test-http-dropconn.vcxproj         |    41 -
 build/MSVC/2010/test-http.vcxproj                  |    41 -
 build/MSVC/2010/test-judy.vcxproj                  |    33 -
 build/MSVC/2010/test-kapp.vcxproj                  |    35 -
 build/MSVC/2010/test-kdb.vcxproj                   |    38 -
 build/MSVC/2010/test-keystore.vcxproj              |    34 -
 build/MSVC/2010/test-kfc.vcxproj                   |    39 -
 build/MSVC/2010/test-kfg.vcxproj                   |    38 -
 build/MSVC/2010/test-kfs_cache.vcxproj             |    38 -
 build/MSVC/2010/test-kfs_kfs.vcxproj               |    38 -
 build/MSVC/2010/test-kfs_md5.vcxproj               |    38 -
 build/MSVC/2010/test-kfs_ramfile.vcxproj           |    38 -
 build/MSVC/2010/test-kfs_resolve.vcxproj           |    38 -
 build/MSVC/2010/test-klib.vcxproj                  |    34 -
 build/MSVC/2010/test-kns.vcxproj                   |    48 -
 build/MSVC/2010/test-kproc.vcxproj                 |    34 -
 build/MSVC/2010/test-krypto_encdec.vcxproj         |    39 -
 build/MSVC/2010/test-krypto_reenc.vcxproj          |    39 -
 build/MSVC/2010/test-ktst.vcxproj                  |    34 -
 build/MSVC/2010/test-log.vcxproj                   |    34 -
 build/MSVC/2010/test-ncbi-vdb.sln                  |   516 -
 build/MSVC/2010/test-ngs.vcxproj                   |    44 -
 build/MSVC/2010/test-ngs_csra1-c++.vcxproj         |    41 -
 build/MSVC/2010/test-ngs_csra1.vcxproj             |    40 -
 build/MSVC/2010/test-ngs_csra1_pileup.vcxproj      |    40 -
 .../2010/test-ngs_csra1_readcollection.vcxproj     |    40 -
 build/MSVC/2010/test-ngs_csra1_refwin.vcxproj      |    40 -
 build/MSVC/2010/test-ngs_csra1pileup-c++.vcxproj   |    38 -
 build/MSVC/2010/test-ngs_referencesequence.vcxproj |    40 -
 build/MSVC/2010/test-ngs_sra-c++.vcxproj           |    37 -
 build/MSVC/2010/test-ngs_sra.vcxproj               |    40 -
 build/MSVC/2010/test-ngs_sradb-c++.vcxproj         |    41 -
 build/MSVC/2010/test-ngs_sradb.vcxproj             |    40 -
 build/MSVC/2010/test-out.vcxproj                   |    34 -
 build/MSVC/2010/test-path.vcxproj                  |    34 -
 build/MSVC/2010/test-printf.vcxproj                |    34 -
 build/MSVC/2010/test-project.props                 |    24 -
 build/MSVC/2010/test-ramfile.vcxproj               |    34 -
 build/MSVC/2010/test-repository.vcxproj            |    34 -
 build/MSVC/2010/test-resolve.vcxproj               |    34 -
 build/MSVC/2010/test-sra-release-version.vcxproj   |    34 -
 build/MSVC/2010/test-sraxf.vcxproj                 |    34 -
 build/MSVC/2010/test-vdb-dll-md.vcxproj            |    50 -
 build/MSVC/2010/test-vdb-dll.vcxproj               |    34 -
 build/MSVC/2010/test-vdb.vcxproj                   |    34 -
 build/MSVC/2010/test-vfs.vcxproj                   |    38 -
 build/MSVC/2010/test-vfsmanager.vcxproj            |    36 -
 build/MSVC/2010/test-vxf.vcxproj                   |    35 -
 build/MSVC/2010/test-wkdb.vcxproj                  |    38 -
 build/MSVC/2010/test-wvdb-dll-md.vcxproj           |    59 -
 build/MSVC/2010/test-wvdb-dll.vcxproj              |    43 -
 build/MSVC/2010/test-wvdb.vcxproj                  |    43 -
 build/MSVC/2010/tui.vcxproj                        |    53 -
 build/MSVC/2010/tui_cpp.vcxproj                    |    28 -
 build/MSVC/2010/vdb-common.props                   |    91 -
 build/MSVC/2010/wb-test-kfg.vcxproj                |    34 -
 build/MSVC/2010/xfs.vcxproj                        |    88 -
 build/MSVC/2010/zlib.vcxproj                       |    46 -
 build/MSVC/2013/bz2.vcxproj                        |    35 -
 build/MSVC/2013/bz2.vcxproj.user                   |     3 -
 build/MSVC/2013/dll-project.props                  |    46 -
 build/MSVC/2013/exe-project.props                  |    59 -
 build/MSVC/2013/kapp-md.vcxproj                    |    45 -
 build/MSVC/2013/kapp-md.vcxproj.user               |     3 -
 build/MSVC/2013/kapp.vcxproj                       |    35 -
 build/MSVC/2013/kapp.vcxproj.user                  |     3 -
 build/MSVC/2013/ktst-md.vcxproj                    |    41 -
 build/MSVC/2013/ktst-md.vcxproj.user               |     3 -
 build/MSVC/2013/ktst.vcxproj                       |    31 -
 build/MSVC/2013/ktst.vcxproj.user                  |     3 -
 build/MSVC/2013/lib-project.props                  |    49 -
 build/MSVC/2013/load.vcxproj                       |    32 -
 build/MSVC/2013/load.vcxproj.user                  |     3 -
 build/MSVC/2013/loader.vcxproj                     |    34 -
 build/MSVC/2013/loader.vcxproj.user                |     3 -
 build/MSVC/2013/ncbi-vdb-dll-md.vcxproj            |  3421 ----
 build/MSVC/2013/ncbi-vdb-dll-md.vcxproj.user       |     3 -
 build/MSVC/2013/ncbi-vdb-dll.filters               |  1342 --
 build/MSVC/2013/ncbi-vdb-dll.vcxproj               |  3416 ----
 build/MSVC/2013/ncbi-vdb-dll.vcxproj.user          |     3 -
 build/MSVC/2013/ncbi-vdb.sln                       |   192 -
 build/MSVC/2013/ncbi-vdb.suo                       |   Bin 28160 -> 0 bytes
 build/MSVC/2013/ncbi-vdb.vcxproj                   |  3384 ----
 build/MSVC/2013/ncbi-vdb.vcxproj.filters           |  1349 --
 build/MSVC/2013/ncbi-vdb.vcxproj.user              |     3 -
 build/MSVC/2013/ncbi-wvdb-dll-md.vcxproj           |  3024 ----
 build/MSVC/2013/ncbi-wvdb-dll-md.vcxproj.user      |     3 -
 build/MSVC/2013/ncbi-wvdb-dll.vcxproj              |  3014 ----
 build/MSVC/2013/ncbi-wvdb-dll.vcxproj.user         |     3 -
 build/MSVC/2013/ncbi-wvdb.vcxproj                  |  2987 ----
 build/MSVC/2013/ncbi-wvdb.vcxproj.filters          |  1214 --
 build/MSVC/2013/ncbi-wvdb.vcxproj.user             |     3 -
 build/MSVC/2013/ngs-c++.vcxproj                    |    34 -
 build/MSVC/2013/ngs-c++.vcxproj.user               |     3 -
 build/MSVC/2013/pileup_dev.vcxproj                 |    37 -
 build/MSVC/2013/test-agrep.vcxproj                 |    36 -
 build/MSVC/2013/test-agrep.vcxproj.user            |     3 -
 build/MSVC/2013/test-asm.vcxproj                   |    33 -
 build/MSVC/2013/test-asm.vcxproj.user              |     3 -
 build/MSVC/2013/test-cc.vcxproj                    |    33 -
 build/MSVC/2013/test-cc.vcxproj.user               |     3 -
 build/MSVC/2013/test-dependencies.vcxproj          |    38 -
 build/MSVC/2013/test-http-dropconn.vcxproj         |    42 -
 build/MSVC/2013/test-http-dropconn.vcxproj.user    |     3 -
 build/MSVC/2013/test-http.vcxproj                  |    42 -
 build/MSVC/2013/test-http.vcxproj.user             |     3 -
 build/MSVC/2013/test-judy.vcxproj                  |    34 -
 build/MSVC/2013/test-judy.vcxproj.user             |     3 -
 build/MSVC/2013/test-kapp.vcxproj                  |    35 -
 build/MSVC/2013/test-kdb.vcxproj                   |    36 -
 build/MSVC/2013/test-kdb.vcxproj.user              |     3 -
 build/MSVC/2013/test-keystore.vcxproj              |    33 -
 build/MSVC/2013/test-keystore.vcxproj.user         |     3 -
 build/MSVC/2013/test-kfc.vcxproj                   |    35 -
 build/MSVC/2013/test-kfc.vcxproj.user              |     3 -
 build/MSVC/2013/test-kfg.vcxproj                   |    36 -
 build/MSVC/2013/test-kfg.vcxproj.user              |     3 -
 build/MSVC/2013/test-kfs_cache.vcxproj             |    36 -
 build/MSVC/2013/test-kfs_cache.vcxproj.user        |     3 -
 build/MSVC/2013/test-kfs_kfs.vcxproj               |    36 -
 build/MSVC/2013/test-kfs_kfs.vcxproj.user          |     3 -
 build/MSVC/2013/test-kfs_md5.vcxproj               |    36 -
 build/MSVC/2013/test-kfs_md5.vcxproj.user          |     3 -
 build/MSVC/2013/test-kfs_ramfile.vcxproj           |    36 -
 build/MSVC/2013/test-kfs_ramfile.vcxproj.user      |     3 -
 build/MSVC/2013/test-kfs_resolve.vcxproj           |    36 -
 build/MSVC/2013/test-kfs_resolve.vcxproj.user      |     3 -
 build/MSVC/2013/test-klib.vcxproj                  |    33 -
 build/MSVC/2013/test-klib.vcxproj.user             |     3 -
 build/MSVC/2013/test-kns.vcxproj                   |    42 -
 build/MSVC/2013/test-kns.vcxproj.user              |     3 -
 build/MSVC/2013/test-kproc.vcxproj                 |    33 -
 build/MSVC/2013/test-kproc.vcxproj.user            |     3 -
 build/MSVC/2013/test-krypto_encdec.vcxproj         |    37 -
 build/MSVC/2013/test-krypto_encdec.vcxproj.user    |     3 -
 build/MSVC/2013/test-krypto_reenc.vcxproj          |    37 -
 build/MSVC/2013/test-krypto_reenc.vcxproj.user     |     3 -
 build/MSVC/2013/test-ktst.vcxproj                  |    33 -
 build/MSVC/2013/test-ktst.vcxproj.user             |     3 -
 build/MSVC/2013/test-log.vcxproj                   |    33 -
 build/MSVC/2013/test-log.vcxproj.user              |     3 -
 build/MSVC/2013/test-ncbi-vdb.sln                  |   506 -
 build/MSVC/2013/test-ncbi-vdb.suo                  |   Bin 61952 -> 0 bytes
 build/MSVC/2013/test-ngs.vcxproj                   |    41 -
 build/MSVC/2013/test-ngs.vcxproj.user              |     3 -
 build/MSVC/2013/test-ngs_csra1-c++.vcxproj         |    39 -
 build/MSVC/2013/test-ngs_csra1-c++.vcxproj.user    |     3 -
 build/MSVC/2013/test-ngs_csra1.vcxproj             |    38 -
 build/MSVC/2013/test-ngs_csra1.vcxproj.user        |     3 -
 build/MSVC/2013/test-ngs_csra1_pileup.vcxproj      |    38 -
 build/MSVC/2013/test-ngs_csra1_pileup.vcxproj.user |     3 -
 .../2013/test-ngs_csra1_readcollection.vcxproj     |    38 -
 .../test-ngs_csra1_readcollection.vcxproj.user     |     3 -
 build/MSVC/2013/test-ngs_csra1_refwin.vcxproj      |    38 -
 build/MSVC/2013/test-ngs_csra1_refwin.vcxproj.user |     3 -
 build/MSVC/2013/test-ngs_csra1pileup-c++.vcxproj   |    37 -
 .../2013/test-ngs_csra1pileup-c++.vcxproj.user     |     3 -
 build/MSVC/2013/test-ngs_referencesequence.vcxproj |    38 -
 .../2013/test-ngs_referencesequence.vcxproj.user   |     3 -
 build/MSVC/2013/test-ngs_sra-c++.vcxproj           |    36 -
 build/MSVC/2013/test-ngs_sra-c++.vcxproj.user      |     3 -
 build/MSVC/2013/test-ngs_sra.vcxproj               |    38 -
 build/MSVC/2013/test-ngs_sra.vcxproj.user          |     3 -
 build/MSVC/2013/test-ngs_sradb-c++.vcxproj         |    39 -
 build/MSVC/2013/test-ngs_sradb-c++.vcxproj.user    |     3 -
 build/MSVC/2013/test-ngs_sradb.vcxproj             |    38 -
 build/MSVC/2013/test-ngs_sradb.vcxproj.user        |     3 -
 build/MSVC/2013/test-out.vcxproj                   |    33 -
 build/MSVC/2013/test-out.vcxproj.user              |     3 -
 build/MSVC/2013/test-path.vcxproj                  |    33 -
 build/MSVC/2013/test-path.vcxproj.user             |     3 -
 build/MSVC/2013/test-printf.vcxproj                |    33 -
 build/MSVC/2013/test-printf.vcxproj.user           |     3 -
 build/MSVC/2013/test-project.props                 |    24 -
 build/MSVC/2013/test-ramfile.vcxproj               |    34 -
 build/MSVC/2013/test-repository.vcxproj            |    33 -
 build/MSVC/2013/test-repository.vcxproj.user       |     3 -
 build/MSVC/2013/test-resolve.vcxproj               |    34 -
 build/MSVC/2013/test-sra-release-version.vcxproj   |    33 -
 .../2013/test-sra-release-version.vcxproj.user     |     3 -
 build/MSVC/2013/test-sraxf.vcxproj                 |    34 -
 build/MSVC/2013/test-vdb-dll-md.vcxproj            |    48 -
 build/MSVC/2013/test-vdb-dll-md.vcxproj.user       |     3 -
 build/MSVC/2013/test-vdb-dll.vcxproj               |    33 -
 build/MSVC/2013/test-vdb-dll.vcxproj.user          |     3 -
 build/MSVC/2013/test-vdb.vcxproj                   |    33 -
 build/MSVC/2013/test-vdb.vcxproj.user              |     3 -
 build/MSVC/2013/test-vfs.vcxproj                   |    34 -
 build/MSVC/2013/test-vfs.vcxproj.user              |     3 -
 build/MSVC/2013/test-vfsmanager.vcxproj            |    36 -
 build/MSVC/2013/test-vfsmanager.vcxproj.user       |     3 -
 build/MSVC/2013/test-vxf.vcxproj                   |    34 -
 build/MSVC/2013/test-vxf.vcxproj.user              |     3 -
 build/MSVC/2013/test-wkdb.vcxproj                  |    36 -
 build/MSVC/2013/test-wkdb.vcxproj.user             |     3 -
 build/MSVC/2013/test-wvdb-dll-md.vcxproj           |    55 -
 build/MSVC/2013/test-wvdb-dll-md.vcxproj.user      |     3 -
 build/MSVC/2013/test-wvdb-dll.vcxproj              |    40 -
 build/MSVC/2013/test-wvdb-dll.vcxproj.user         |     3 -
 build/MSVC/2013/test-wvdb.vcxproj                  |    40 -
 build/MSVC/2013/test-wvdb.vcxproj.user             |     3 -
 build/MSVC/2013/tui.vcxproj                        |    51 -
 build/MSVC/2013/tui.vcxproj.user                   |     3 -
 build/MSVC/2013/tui_cpp.vcxproj                    |    28 -
 build/MSVC/2013/tui_cpp.vcxproj.user               |     3 -
 build/MSVC/2013/vdb-common.props                   |    90 -
 build/MSVC/2013/wb-test-kfg.vcxproj                |    33 -
 build/MSVC/2013/wb-test-kfg.vcxproj.user           |     3 -
 build/MSVC/2013/xfs.vcxproj                        |    88 -
 build/MSVC/2013/zlib.vcxproj                       |    43 -
 build/MSVC/2013/zlib.vcxproj.user                  |     3 -
 build/Makefile.install                             |     4 -
 build/Makefile.linux                               |     2 +-
 build/Makefile.mac                                 |    81 -
 build/Makefile.sun                                 |    96 -
 build/Makefile.sun.cc                              |   155 -
 build/Makefile.sun.gcc                             |   138 -
 build/Makefile.vc++                                |    81 -
 test/kfg/config.linux.kfg => build/Makefile.vers   |     4 +-
 build/Makefile.win                                 |    79 -
 build/sun-c++.sh                                   |   100 -
 build/sun-cc.sh                                    |    93 -
 build/win-cc.sh                                    |   257 -
 interfaces/ext/bzlib.h                             |   282 -
 interfaces/ext/hdf5/H5ACpublic.h                   |   508 -
 interfaces/ext/hdf5/H5AbstractDs.h                 |    91 -
 interfaces/ext/hdf5/H5Apublic.h                    |   120 -
 interfaces/ext/hdf5/H5ArrayType.h                  |    62 -
 interfaces/ext/hdf5/H5AtomType.h                   |    81 -
 interfaces/ext/hdf5/H5Attribute.h                  |    98 -
 interfaces/ext/hdf5/H5Classes.h                    |    51 -
 interfaces/ext/hdf5/H5CommonFG.h                   |   172 -
 interfaces/ext/hdf5/H5CompType.h                   |   114 -
 interfaces/ext/hdf5/H5Cpp.h                        |    58 -
 interfaces/ext/hdf5/H5CppDoc.h                     |    91 -
 interfaces/ext/hdf5/H5Cpublic.h                    |    61 -
 interfaces/ext/hdf5/H5DSpublic.h                   |    79 -
 interfaces/ext/hdf5/H5DataSet.h                    |   132 -
 interfaces/ext/hdf5/H5DataSpace.h                  |   131 -
 interfaces/ext/hdf5/H5DataType.h                   |   139 -
 interfaces/ext/hdf5/H5DcreatProp.h                 |   126 -
 interfaces/ext/hdf5/H5Dpublic.h                    |   154 -
 interfaces/ext/hdf5/H5DxferProp.h                  |   111 -
 interfaces/ext/hdf5/H5EnumType.h                   |    77 -
 interfaces/ext/hdf5/H5Epubgen.h                    |   360 -
 interfaces/ext/hdf5/H5Epublic.h                    |   228 -
 interfaces/ext/hdf5/H5Exception.h                  |   164 -
 interfaces/ext/hdf5/H5FDcore.h                     |    42 -
 interfaces/ext/hdf5/H5FDdirect.h                   |    57 -
 interfaces/ext/hdf5/H5FDfamily.h                   |    44 -
 interfaces/ext/hdf5/H5FDlog.h                      |    69 -
 interfaces/ext/hdf5/H5FDmpi.h                      |   123 -
 interfaces/ext/hdf5/H5FDmpio.h                     |    65 -
 interfaces/ext/hdf5/H5FDmpiposix.h                 |    56 -
 interfaces/ext/hdf5/H5FDmulti.h                    |    52 -
 interfaces/ext/hdf5/H5FDpublic.h                   |   279 -
 interfaces/ext/hdf5/H5FDsec2.h                     |    42 -
 interfaces/ext/hdf5/H5FDstdio.h                    |    41 -
 interfaces/ext/hdf5/H5FaccProp.h                   |   142 -
 interfaces/ext/hdf5/H5FcreatProp.h                 |    79 -
 interfaces/ext/hdf5/H5File.h                       |   148 -
 interfaces/ext/hdf5/H5FloatType.h                  |    74 -
 interfaces/ext/hdf5/H5Fpublic.h                    |   181 -
 interfaces/ext/hdf5/H5Gpublic.h                    |   178 -
 interfaces/ext/hdf5/H5Group.h                      |    76 -
 interfaces/ext/hdf5/H5IMpublic.h                   |    87 -
 interfaces/ext/hdf5/H5IdComponent.h                |    99 -
 interfaces/ext/hdf5/H5Include.h                    |    30 -
 interfaces/ext/hdf5/H5IntType.h                    |    56 -
 interfaces/ext/hdf5/H5Ipublic.h                    |   104 -
 interfaces/ext/hdf5/H5LTpublic.h                   |   351 -
 interfaces/ext/hdf5/H5Library.h                    |    70 -
 interfaces/ext/hdf5/H5Lpublic.h                    |   202 -
 interfaces/ext/hdf5/H5MMpublic.h                   |    47 -
 interfaces/ext/hdf5/H5Object.h                     |   133 -
 interfaces/ext/hdf5/H5Opublic.h                    |   203 -
 interfaces/ext/hdf5/H5PTpublic.h                   |   127 -
 interfaces/ext/hdf5/H5PacketTable.h                |   244 -
 interfaces/ext/hdf5/H5Ppublic.h                    |   432 -
 interfaces/ext/hdf5/H5PredType.h                   |   250 -
 interfaces/ext/hdf5/H5PropList.h                   |   122 -
 interfaces/ext/hdf5/H5Rpublic.h                    |    92 -
 interfaces/ext/hdf5/H5Spublic.h                    |   152 -
 interfaces/ext/hdf5/H5StrType.h                    |    68 -
 interfaces/ext/hdf5/H5TBpublic.h                   |   233 -
 interfaces/ext/hdf5/H5Tpublic.h                    |   621 -
 interfaces/ext/hdf5/H5VarLenType.h                 |    52 -
 interfaces/ext/hdf5/H5Zpublic.h                    |   249 -
 interfaces/ext/hdf5/H5api_adpt.h                   |   408 -
 interfaces/ext/hdf5/H5f90i.h                       |    43 -
 interfaces/ext/hdf5/H5f90i_gen.h                   |    48 -
 interfaces/ext/hdf5/H5overflow.h                   |  1939 ---
 interfaces/ext/hdf5/H5pubconf.h                    |   723 -
 interfaces/ext/hdf5/H5public.h                     |   310 -
 interfaces/ext/hdf5/H5version.h                    |   419 -
 interfaces/ext/hdf5/h5_dble_interface.mod          |  2194 ---
 interfaces/ext/hdf5/h5a.mod                        |  2637 ---
 interfaces/ext/hdf5/h5d.mod                        |  3040 ----
 interfaces/ext/hdf5/h5e.mod                        |  1399 --
 interfaces/ext/hdf5/h5f.mod                        |  1513 --
 interfaces/ext/hdf5/h5fortran_types.mod            |    73 -
 interfaces/ext/hdf5/h5g.mod                        |  1600 --
 interfaces/ext/hdf5/h5global.mod                   |  1354 --
 interfaces/ext/hdf5/h5i.mod                        |  1421 --
 interfaces/ext/hdf5/h5im.mod                       | 16518 ------------------
 interfaces/ext/hdf5/h5l.mod                        |  1568 --
 interfaces/ext/hdf5/h5lib.mod                      |    56 -
 interfaces/ext/hdf5/h5lt.mod                       | 17284 -------------------
 interfaces/ext/hdf5/h5o.mod                        |  1398 --
 interfaces/ext/hdf5/h5p.mod                        |  2804 ---
 interfaces/ext/hdf5/h5r.mod                        |  1458 --
 interfaces/ext/hdf5/h5s.mod                        |  1658 --
 interfaces/ext/hdf5/h5t.mod                        |  1943 ---
 interfaces/ext/hdf5/h5tb.mod                       | 16846 ------------------
 interfaces/ext/hdf5/h5z.mod                        |  1383 --
 interfaces/ext/hdf5/hdf5.h                         |    55 -
 interfaces/ext/hdf5/hdf5.mod                       | 16361 ------------------
 interfaces/ext/hdf5/hdf5_hl.h                      |    32 -
 interfaces/ext/libxml/DOCBparser.h                 |    96 -
 interfaces/ext/libxml/HTMLparser.h                 |   303 -
 interfaces/ext/libxml/HTMLtree.h                   |   147 -
 interfaces/ext/libxml/SAX.h                        |   173 -
 interfaces/ext/libxml/SAX2.h                       |   176 -
 interfaces/ext/libxml/c14n.h                       |   115 -
 interfaces/ext/libxml/catalog.h                    |   182 -
 interfaces/ext/libxml/chvalid.h                    |   230 -
 interfaces/ext/libxml/debugXML.h                   |   217 -
 interfaces/ext/libxml/dict.h                       |    69 -
 interfaces/ext/libxml/encoding.h                   |   226 -
 interfaces/ext/libxml/entities.h                   |   150 -
 interfaces/ext/libxml/globals.h                    |   491 -
 interfaces/ext/libxml/hash.h                       |   233 -
 interfaces/ext/libxml/list.h                       |   137 -
 interfaces/ext/libxml/nanoftp.h                    |   143 -
 interfaces/ext/libxml/nanohttp.h                   |    81 -
 interfaces/ext/libxml/parser.h                     |  1226 --
 interfaces/ext/libxml/parserInternals.h            |   611 -
 interfaces/ext/libxml/pattern.h                    |   100 -
 interfaces/ext/libxml/relaxng.h                    |   213 -
 interfaces/ext/libxml/schemasInternals.h           |   958 -
 interfaces/ext/libxml/schematron.h                 |   142 -
 interfaces/ext/libxml/threads.h                    |    84 -
 interfaces/ext/libxml/tree.h                       |  1252 --
 interfaces/ext/libxml/uri.h                        |    94 -
 interfaces/ext/libxml/valid.h                      |   458 -
 interfaces/ext/libxml/xinclude.h                   |   125 -
 interfaces/ext/libxml/xlink.h                      |   189 -
 interfaces/ext/libxml/xmlIO.h                      |   360 -
 interfaces/ext/libxml/xmlautomata.h                |   146 -
 interfaces/ext/libxml/xmlerror.h                   |   944 -
 interfaces/ext/libxml/xmlexports.h                 |   157 -
 interfaces/ext/libxml/xmlmemory.h                  |   224 -
 interfaces/ext/libxml/xmlmodule.h                  |    57 -
 interfaces/ext/libxml/xmlreader.h                  |   424 -
 interfaces/ext/libxml/xmlregexp.h                  |   222 -
 interfaces/ext/libxml/xmlsave.h                    |    87 -
 interfaces/ext/libxml/xmlschemas.h                 |   218 -
 interfaces/ext/libxml/xmlschemastypes.h            |   151 -
 interfaces/ext/libxml/xmlstring.h                  |   140 -
 interfaces/ext/libxml/xmlunicode.h                 |   202 -
 interfaces/ext/libxml/xmlversion.h                 |   458 -
 interfaces/ext/libxml/xmlwriter.h                  |   485 -
 interfaces/ext/libxml/xpath.h                      |   546 -
 interfaces/ext/libxml/xpathInternals.h             |   630 -
 interfaces/ext/libxml/xpointer.h                   |   114 -
 interfaces/ext/magic.h                             |    89 -
 interfaces/ext/regex.h                             |   557 -
 interfaces/ext/ricehdf.h                           |    86 -
 interfaces/ext/zconf.h                             |   304 -
 interfaces/ext/zlib.h                              |  1613 --
 interfaces/kdb/column.h                            |    41 +
 interfaces/kdb/table.h                             |     6 +
 interfaces/kfg/config.h                            |     1 +
 interfaces/kfg/kfg-priv.h                          |     3 +-
 interfaces/kfg/repository.h                        |    37 +-
 interfaces/kfs/arc.h                               |     3 +-
 interfaces/kfs/cacheteefile.h                      |     2 +
 interfaces/kfs/pmem.h                              |     9 +-
 interfaces/kfs/sra.h                               |     2 +-
 interfaces/klib/namelist.h                         |    46 +
 interfaces/kns/http.h                              |     2 +
 interfaces/kproc/timeout.h                         |     4 +
 interfaces/sra/generic-fastq.vschema               |   265 +
 interfaces/vdb/manager.h                           |    28 +-
 interfaces/vdb/manager.hpp                         |    15 +
 interfaces/vdb/vdb.vschema                         |    51 +-
 interfaces/vfs/manager-priv.h                      |    19 +
 libs/Makefile                                      |     2 +
 libs/align/refseq-mgr.c                            |    64 +-
 libs/align/writer-cmn.c                            |    14 +-
 libs/align/writer-reference.c                      |   266 +-
 libs/blast/blast-mgr.c                             |     2 +-
 libs/ext/Makefile                                  |    55 -
 libs/ext/bzip2/.gitignore                          |     4 -
 libs/ext/bzip2/LICENSE                             |    42 -
 libs/ext/bzip2/Makefile                            |   154 -
 libs/ext/bzip2/blocksort.c                         |  1094 --
 libs/ext/bzip2/bzip2-1.0.6.diff                    |    20 -
 libs/ext/bzip2/bzip2.c                             |  2034 ---
 libs/ext/bzip2/bzip2recover.c                      |   514 -
 libs/ext/bzip2/bzlib.c                             |  1572 --
 libs/ext/bzip2/bzlib.h                             |   282 -
 libs/ext/bzip2/bzlib_private.h                     |   509 -
 libs/ext/bzip2/compress.c                          |   674 -
 libs/ext/bzip2/crctable.c                          |   104 -
 libs/ext/bzip2/decompress.c                        |   646 -
 libs/ext/bzip2/dlltest.c                           |   175 -
 libs/ext/bzip2/huffman.c                           |   205 -
 libs/ext/bzip2/mk251.c                             |    31 -
 libs/ext/bzip2/randtable.c                         |    84 -
 libs/ext/bzip2/spewG.c                             |    54 -
 libs/ext/bzip2/unzcrash.c                          |   141 -
 libs/ext/magic/.gitignore                          |     1 -
 libs/ext/magic/Makefile                            |   127 -
 libs/ext/magic/apprentice.c                        |  2381 ---
 libs/ext/magic/apptype.c                           |   168 -
 libs/ext/magic/ascmagic.c                          |   389 -
 libs/ext/magic/asprintf.c                          |    47 -
 libs/ext/magic/cdf.c                               |  1265 --
 libs/ext/magic/cdf.h                               |   305 -
 libs/ext/magic/cdf_time.c                          |   192 -
 libs/ext/magic/compress.c                          |   496 -
 libs/ext/magic/config.h                            |   269 -
 libs/ext/magic/elfclass.h                          |    69 -
 libs/ext/magic/encoding.c                          |   500 -
 libs/ext/magic/file.c                              |   482 -
 libs/ext/magic/file.h                              |   457 -
 libs/ext/magic/file_opts.h                         |    49 -
 libs/ext/magic/fsmagic.c                           |   363 -
 libs/ext/magic/funcs.c                             |   426 -
 libs/ext/magic/getopt_long.c                       |   498 -
 libs/ext/magic/is_tar.c                            |   157 -
 libs/ext/magic/libmagic.vers                       |     1 -
 libs/ext/magic/magic.c                             |   412 -
 libs/ext/magic/mygetopt.h                          |    68 -
 libs/ext/magic/names.h                             |   173 -
 libs/ext/magic/patchlevel.h                        |   355 -
 libs/ext/magic/print.c                             |   240 -
 libs/ext/magic/readcdf.c                           |   284 -
 libs/ext/magic/readelf.c                           |  1192 --
 libs/ext/magic/readelf.h                           |   312 -
 libs/ext/magic/softmagic.c                         |  2012 ---
 libs/ext/magic/strlcat.c                           |    58 -
 libs/ext/magic/strlcpy.c                           |    54 -
 libs/ext/magic/tar.h                               |    73 -
 libs/ext/magic/vasprintf.c                         |   642 -
 libs/ext/regex/Makefile                            |   114 -
 libs/ext/regex/libregex.def                        |    18 -
 libs/ext/regex/regcomp.c                           |  3796 ----
 libs/ext/regex/regex.c                             |    74 -
 libs/ext/regex/regex_internal.c                    |  1717 --
 libs/ext/regex/regex_internal.h                    |   782 -
 libs/ext/regex/regexec.c                           |  4330 -----
 libs/ext/szip/.gitignore                           |     4 -
 libs/ext/szip/Makefile                             |   117 -
 libs/ext/zlib/.gitignore                           |     4 -
 libs/ext/zlib/Makefile                             |   162 -
 libs/ext/zlib/adler32.c                            |   179 -
 libs/ext/zlib/compress.c                           |    80 -
 libs/ext/zlib/crc32.c                              |   425 -
 libs/ext/zlib/crc32.h                              |   441 -
 libs/ext/zlib/deflate.c                            |  1967 ---
 libs/ext/zlib/deflate.h                            |   346 -
 libs/ext/zlib/gzclose.c                            |    25 -
 libs/ext/zlib/gzguts.h                             |   213 -
 libs/ext/zlib/gzlib.c                              |   634 -
 libs/ext/zlib/gzread.c                             |   594 -
 libs/ext/zlib/gzwrite.c                            |   577 -
 libs/ext/zlib/infback.c                            |   640 -
 libs/ext/zlib/inffast.c                            |   340 -
 libs/ext/zlib/inffast.h                            |    11 -
 libs/ext/zlib/inffixed.h                           |    94 -
 libs/ext/zlib/inflate.c                            |  1512 --
 libs/ext/zlib/inflate.h                            |   122 -
 libs/ext/zlib/inftrees.c                           |   306 -
 libs/ext/zlib/inftrees.h                           |    62 -
 libs/ext/zlib/sun/stdlib.h                         |     7 -
 libs/ext/zlib/trees.c                              |  1226 --
 libs/ext/zlib/trees.h                              |   128 -
 libs/ext/zlib/uncompr.c                            |    59 -
 libs/ext/zlib/zconf.h                              |   511 -
 libs/ext/zlib/zlib-1.2.8.diff                      |    10 -
 libs/ext/zlib/zlib.h                               |  1768 --
 libs/ext/zlib/zutil.c                              |   324 -
 libs/ext/zlib/zutil.h                              |   253 -
 libs/hdf5/Makefile                                 |     4 +-
 libs/hdf5/libkdf5.vers                             |     1 -
 libs/kapp/main.c                                   |     2 +-
 libs/kdb/colidx.c                                  |    14 +-
 libs/kdb/column.c                                  |   194 +-
 libs/kdb/libkdb.vers.h                             |     2 +-
 libs/kdb/libwkdb.vers.h                            |    27 -
 libs/kdb/table.c                                   |    12 +
 libs/kdb/wcolidx.c                                 |    18 +-
 libs/kdb/wcolumn.c                                 |   179 +-
 libs/kdb/wdbmgr.c                                  |     2 +-
 libs/kdb/wmeta.c                                   |     2 +-
 libs/kdb/wtable.c                                  |     9 +
 libs/kfc/unix/sysrsrc.c                            |     4 +-
 libs/kfg/config.c                                  |    37 +-
 libs/kfg/default.kfg                               |     4 +-
 libs/kfg/repository.c                              |   170 +
 libs/kfs/arc.c                                     |    14 +
 libs/kfs/cacheteefile.c                            |     5 +
 libs/kfs/pmem.c                                    |  1247 +-
 libs/klib/btree.c                                  |    10 +-
 libs/klib/release-vers.h                           |     2 +-
 libs/klib/report-klib.c                            |     3 +-
 libs/klib/vector_namelist.c                        |   284 +-
 libs/kns/Makefile                                  |    17 +-
 libs/kns/http-client.c                             |    70 +-
 libs/kns/http-file.c                               |     5 +
 libs/kns/libkns.vers                               |     1 -
 libs/kns/libkns.vers.h                             |     1 -
 libs/kns/manager.c                                 |     4 +-
 libs/kproc/unix/syscond.c                          |     2 +-
 libs/loader/Makefile                               |     1 -
 libs/loader/common-writer.c                        |    91 +-
 libs/ncbi-vdb/Makefile                             |     9 +-
 libs/ncbi-vdb/libncbi-vdb.vers                     |     2 +-
 libs/ncbi-vdb/libncbi-wvdb.vers                    |     1 -
 libs/ngs-c++/Makefile                              |     2 +-
 libs/ngs-c++/NCBI-NGS.cpp                          |     5 +-
 libs/ngs-c++/libncbi-ngs-c++.vers                  |     1 -
 libs/ngs-jni/jni_Manager.c                         |     4 +-
 libs/ngs-jni/libncbi-ngs-jni.vers                  |     1 -
 libs/ngs-py/py_Manager.c                           |     4 +-
 libs/ngs/CSRA1_Alignment.c                         |   352 +-
 libs/ngs/CSRA1_ReadCollection.c                    |   156 +-
 libs/ngs/Makefile                                  |     4 +-
 libs/ngs/NGS_Cursor.c                              |   138 +-
 libs/ngs/NGS_FragmentBlob.c                        |   476 +
 libs/ngs/NGS_FragmentBlob.h                        |   125 +
 libs/ngs/NGS_FragmentBlobIterator.c                |   185 +
 .../NGS_FragmentBlobIterator.h}                    |    64 +-
 libs/ngs/NGS_ReadCollection.c                      |    22 +-
 libs/ngs/NGS_ReadCollection.h                      |    22 +-
 libs/ngs/SRA_DB_ReadCollection.c                   |    67 +-
 libs/ngs/SRA_ReadCollection.c                      |    52 +-
 libs/search/sw-search.c                            |     5 +
 libs/sraxf/Makefile                                |     1 +
 .../tokenize-spot_name-generic-fastq.c}            |    64 +-
 libs/svdb/Makefile                                 |     4 +-
 libs/svdb/libsvdb.vers                             |     1 -
 libs/vdb/dbmgr-cmn.c                               |    60 +
 libs/vdb/libvdb.vers.h                             |     2 +-
 libs/vdb/libwvdb.vers.h                            |    27 -
 libs/vdb/linker-int.c                              |     2 +
 libs/vdb/phys-cmn.c                                |    64 +-
 libs/vdb/prod-cmn.c                                |   105 +-
 libs/vdb/schema-eval.c                             |     6 +-
 libs/vdb/schema-priv.h                             |     2 +-
 libs/vdb/table-cmn.c                               |     2 +
 libs/vdb/table-priv.h                              |     3 +
 libs/vdb/wdbmgr.c                                  |     4 +-
 libs/vdb/wtable.c                                  |     2 +
 libs/vfs/manager.c                                 |   117 +
 libs/vfs/resolver-priv.h                           |    11 +-
 libs/vfs/resolver.c                                |   165 +-
 libs/vxf/deriv.c                                   |    22 +-
 libs/vxf/integral.c                                |    22 +-
 libs/vxf/integral_0.c                              |    22 +-
 setup/konfigure.perl                               |   201 +-
 setup/package.prl                                  |     1 -
 test/ext/Makefile                                  |    51 -
 test/ext/magic/Makefile                            |    61 -
 test/ext/magic/magictest.cpp                       |    85 -
 test/kapp/Makefile                                 |    41 +-
 .../kfg/kfg-priv.h => test/kapp/report-kns-agent.c |    34 +-
 .../wait_for_file.sh => test/kapp/run-kns-agent.sh |    63 +-
 test/kfg/Makefile                                  |    15 +-
 test/kfg/flat-sra-kfg.cpp                          |   415 +
 test/kfg/flat-sra-kfg/aux_root/empty.kfg           |     1 +
 test/kfg/flat-sra-kfg/new/sraFlat.kfg              |     1 +
 test/kfg/flat-sra-kfg/old/fuse1000.kfg             |     1 +
 test/kfg/ncbi-home-from-env.cpp                    |    27 +
 test/klib/Makefile                                 |    40 +-
 test/klib/test-vnamelist.cpp                       |   364 +
 test/kns/httptest.cpp                              |    65 +-
 test/loader/Makefile                               |     4 +-
 {libs => test}/loader/sequence-writer.c            |     0
 test/ngs-java/Makefile                             |    14 +-
 test/ngs-java/build.xml                            |    38 +-
 test/ngs-java/ngs_test_CSRA1.java                  |    27 +
 test/ngs-java/ngs_test_lib_load.java               |   246 +
 test/ngs-python/build.xml                          |    26 +-
 test/ngs/Makefile                                  |    61 +-
 test/ngs/data/.gitignore                           |     1 +
 test/ngs/ngs_c_fixture.hpp                         |    23 +-
 test/ngs/ngstest.cpp                               |   280 +-
 test/ngs/ngstest_csra1.cpp                         |   379 +-
 test/ngs/ngstest_csra1_refwin.cpp                  |    10 +-
 test/ngs/ngstest_fragmentblob.cpp                  |   597 +
 test/ngs/ngstest_makedb.cpp                        |   196 +
 test/ngs/ngstest_sra.cpp                           |   436 +-
 test/ngs/ngstest_sradb.cpp                         |   312 +-
 test/search/test-agrep.cpp                         |     8 +-
 test/vdb/Makefile                                  |    55 +-
 test/vdb/db/blob_val_inv_chsum.sra                 |   Bin 0 -> 196213 bytes
 test/vdb/test-VDB-3060.cpp                         |   380 +
 test/vdb/test-blob-val.cpp                         |   185 +
 test/vdb/test-sparse-col.cpp                       |     0
 test/vdb/test-vdb.cpp                              |   285 +-
 test/vdb/test-wvdb.cpp                             |   169 +-
 test/vfs/Makefile                                  |    19 +-
 test/vfs/caching-kfg/incomplete.kfg                |     4 +
 .../vfs/repo/wgs/WGS/YY/ZZ/YYZZ10                  |     0
 .../public/refseq => repo/wgs/WGS/YY/ZZ}/YYZZ99    |     0
 .../vfs/repo/wgs2/WGS/YY/ZZ/YYZZ20                 |     0
 .../public/refseq => repo/wgs2/WGS/YY/ZZ}/YYZZ99   |     0
 test/vfs/resolvertest.cpp                          |   138 +-
 test/vfs/test-caching.cpp                          |   615 +
 643 files changed, 8622 insertions(+), 229329 deletions(-)
 delete mode 100755 build/MSVC/2010/.gitignore
 delete mode 100644 build/MSVC/2010/bz2.vcxproj
 delete mode 100644 build/MSVC/2010/dll-project.props
 delete mode 100644 build/MSVC/2010/exe-project.props
 delete mode 100644 build/MSVC/2010/kapp-md.vcxproj
 delete mode 100644 build/MSVC/2010/kapp.vcxproj
 delete mode 100644 build/MSVC/2010/ktst-md.vcxproj
 delete mode 100644 build/MSVC/2010/ktst.vcxproj
 delete mode 100644 build/MSVC/2010/lib-project.props
 delete mode 100644 build/MSVC/2010/load.vcxproj
 delete mode 100644 build/MSVC/2010/loader.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-vdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-vdb-dll.filters
 delete mode 100644 build/MSVC/2010/ncbi-vdb-dll.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-vdb.sln
 delete mode 100644 build/MSVC/2010/ncbi-vdb.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-vdb.vcxproj.filters
 delete mode 100644 build/MSVC/2010/ncbi-wvdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-wvdb-dll.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-wvdb.vcxproj
 delete mode 100644 build/MSVC/2010/ncbi-wvdb.vcxproj.filters
 delete mode 100644 build/MSVC/2010/ngs-c++.vcxproj
 delete mode 100644 build/MSVC/2010/pileup_dev.vcxproj
 delete mode 100644 build/MSVC/2010/test-agrep.vcxproj
 delete mode 100644 build/MSVC/2010/test-asm.vcxproj
 delete mode 100644 build/MSVC/2010/test-cc.vcxproj
 delete mode 100644 build/MSVC/2010/test-dependencies.vcxproj
 delete mode 100644 build/MSVC/2010/test-http-dropconn.vcxproj
 delete mode 100644 build/MSVC/2010/test-http.vcxproj
 delete mode 100644 build/MSVC/2010/test-judy.vcxproj
 delete mode 100644 build/MSVC/2010/test-kapp.vcxproj
 delete mode 100644 build/MSVC/2010/test-kdb.vcxproj
 delete mode 100644 build/MSVC/2010/test-keystore.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfc.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfg.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfs_cache.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfs_kfs.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfs_md5.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfs_ramfile.vcxproj
 delete mode 100644 build/MSVC/2010/test-kfs_resolve.vcxproj
 delete mode 100644 build/MSVC/2010/test-klib.vcxproj
 delete mode 100644 build/MSVC/2010/test-kns.vcxproj
 delete mode 100644 build/MSVC/2010/test-kproc.vcxproj
 delete mode 100644 build/MSVC/2010/test-krypto_encdec.vcxproj
 delete mode 100644 build/MSVC/2010/test-krypto_reenc.vcxproj
 delete mode 100644 build/MSVC/2010/test-ktst.vcxproj
 delete mode 100644 build/MSVC/2010/test-log.vcxproj
 delete mode 100644 build/MSVC/2010/test-ncbi-vdb.sln
 delete mode 100644 build/MSVC/2010/test-ngs.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1-c++.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1_pileup.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1_readcollection.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1_refwin.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_csra1pileup-c++.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_referencesequence.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_sra-c++.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_sra.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_sradb-c++.vcxproj
 delete mode 100644 build/MSVC/2010/test-ngs_sradb.vcxproj
 delete mode 100644 build/MSVC/2010/test-out.vcxproj
 delete mode 100644 build/MSVC/2010/test-path.vcxproj
 delete mode 100644 build/MSVC/2010/test-printf.vcxproj
 delete mode 100644 build/MSVC/2010/test-project.props
 delete mode 100644 build/MSVC/2010/test-ramfile.vcxproj
 delete mode 100644 build/MSVC/2010/test-repository.vcxproj
 delete mode 100644 build/MSVC/2010/test-resolve.vcxproj
 delete mode 100644 build/MSVC/2010/test-sra-release-version.vcxproj
 delete mode 100644 build/MSVC/2010/test-sraxf.vcxproj
 delete mode 100644 build/MSVC/2010/test-vdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2010/test-vdb-dll.vcxproj
 delete mode 100644 build/MSVC/2010/test-vdb.vcxproj
 delete mode 100644 build/MSVC/2010/test-vfs.vcxproj
 delete mode 100644 build/MSVC/2010/test-vfsmanager.vcxproj
 delete mode 100644 build/MSVC/2010/test-vxf.vcxproj
 delete mode 100644 build/MSVC/2010/test-wkdb.vcxproj
 delete mode 100644 build/MSVC/2010/test-wvdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2010/test-wvdb-dll.vcxproj
 delete mode 100644 build/MSVC/2010/test-wvdb.vcxproj
 delete mode 100644 build/MSVC/2010/tui.vcxproj
 delete mode 100644 build/MSVC/2010/tui_cpp.vcxproj
 delete mode 100644 build/MSVC/2010/vdb-common.props
 delete mode 100644 build/MSVC/2010/wb-test-kfg.vcxproj
 delete mode 100644 build/MSVC/2010/xfs.vcxproj
 delete mode 100644 build/MSVC/2010/zlib.vcxproj
 delete mode 100644 build/MSVC/2013/bz2.vcxproj
 delete mode 100644 build/MSVC/2013/bz2.vcxproj.user
 delete mode 100644 build/MSVC/2013/dll-project.props
 delete mode 100644 build/MSVC/2013/exe-project.props
 delete mode 100644 build/MSVC/2013/kapp-md.vcxproj
 delete mode 100644 build/MSVC/2013/kapp-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/kapp.vcxproj
 delete mode 100644 build/MSVC/2013/kapp.vcxproj.user
 delete mode 100644 build/MSVC/2013/ktst-md.vcxproj
 delete mode 100644 build/MSVC/2013/ktst-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/ktst.vcxproj
 delete mode 100644 build/MSVC/2013/ktst.vcxproj.user
 delete mode 100644 build/MSVC/2013/lib-project.props
 delete mode 100644 build/MSVC/2013/load.vcxproj
 delete mode 100644 build/MSVC/2013/load.vcxproj.user
 delete mode 100644 build/MSVC/2013/loader.vcxproj
 delete mode 100644 build/MSVC/2013/loader.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-vdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-vdb-dll-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-vdb-dll.filters
 delete mode 100644 build/MSVC/2013/ncbi-vdb-dll.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-vdb-dll.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-vdb.sln
 delete mode 100644 build/MSVC/2013/ncbi-vdb.suo
 delete mode 100644 build/MSVC/2013/ncbi-vdb.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-vdb.vcxproj.filters
 delete mode 100644 build/MSVC/2013/ncbi-vdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-wvdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-wvdb-dll-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-wvdb-dll.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-wvdb-dll.vcxproj.user
 delete mode 100644 build/MSVC/2013/ncbi-wvdb.vcxproj
 delete mode 100644 build/MSVC/2013/ncbi-wvdb.vcxproj.filters
 delete mode 100644 build/MSVC/2013/ncbi-wvdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/ngs-c++.vcxproj
 delete mode 100644 build/MSVC/2013/ngs-c++.vcxproj.user
 delete mode 100644 build/MSVC/2013/pileup_dev.vcxproj
 delete mode 100644 build/MSVC/2013/test-agrep.vcxproj
 delete mode 100644 build/MSVC/2013/test-agrep.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-asm.vcxproj
 delete mode 100644 build/MSVC/2013/test-asm.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-cc.vcxproj
 delete mode 100644 build/MSVC/2013/test-cc.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-dependencies.vcxproj
 delete mode 100644 build/MSVC/2013/test-http-dropconn.vcxproj
 delete mode 100644 build/MSVC/2013/test-http-dropconn.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-http.vcxproj
 delete mode 100644 build/MSVC/2013/test-http.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-judy.vcxproj
 delete mode 100644 build/MSVC/2013/test-judy.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kapp.vcxproj
 delete mode 100644 build/MSVC/2013/test-kdb.vcxproj
 delete mode 100644 build/MSVC/2013/test-kdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-keystore.vcxproj
 delete mode 100644 build/MSVC/2013/test-keystore.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfc.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfc.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfg.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfg.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfs_cache.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfs_cache.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfs_kfs.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfs_kfs.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfs_md5.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfs_md5.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfs_ramfile.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfs_ramfile.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kfs_resolve.vcxproj
 delete mode 100644 build/MSVC/2013/test-kfs_resolve.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-klib.vcxproj
 delete mode 100644 build/MSVC/2013/test-klib.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kns.vcxproj
 delete mode 100644 build/MSVC/2013/test-kns.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-kproc.vcxproj
 delete mode 100644 build/MSVC/2013/test-kproc.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-krypto_encdec.vcxproj
 delete mode 100644 build/MSVC/2013/test-krypto_encdec.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-krypto_reenc.vcxproj
 delete mode 100644 build/MSVC/2013/test-krypto_reenc.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ktst.vcxproj
 delete mode 100644 build/MSVC/2013/test-ktst.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-log.vcxproj
 delete mode 100644 build/MSVC/2013/test-log.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ncbi-vdb.sln
 delete mode 100644 build/MSVC/2013/test-ncbi-vdb.suo
 delete mode 100644 build/MSVC/2013/test-ngs.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1-c++.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1-c++.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_pileup.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_pileup.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_readcollection.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_readcollection.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_refwin.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1_refwin.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_csra1pileup-c++.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_csra1pileup-c++.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_referencesequence.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_referencesequence.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_sra-c++.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_sra-c++.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_sra.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_sra.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_sradb-c++.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_sradb-c++.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-ngs_sradb.vcxproj
 delete mode 100644 build/MSVC/2013/test-ngs_sradb.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-out.vcxproj
 delete mode 100644 build/MSVC/2013/test-out.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-path.vcxproj
 delete mode 100644 build/MSVC/2013/test-path.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-printf.vcxproj
 delete mode 100644 build/MSVC/2013/test-printf.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-project.props
 delete mode 100644 build/MSVC/2013/test-ramfile.vcxproj
 delete mode 100644 build/MSVC/2013/test-repository.vcxproj
 delete mode 100644 build/MSVC/2013/test-repository.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-resolve.vcxproj
 delete mode 100644 build/MSVC/2013/test-sra-release-version.vcxproj
 delete mode 100644 build/MSVC/2013/test-sra-release-version.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-sraxf.vcxproj
 delete mode 100644 build/MSVC/2013/test-vdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2013/test-vdb-dll-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-vdb-dll.vcxproj
 delete mode 100644 build/MSVC/2013/test-vdb-dll.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-vdb.vcxproj
 delete mode 100644 build/MSVC/2013/test-vdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-vfs.vcxproj
 delete mode 100644 build/MSVC/2013/test-vfs.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-vfsmanager.vcxproj
 delete mode 100644 build/MSVC/2013/test-vfsmanager.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-vxf.vcxproj
 delete mode 100644 build/MSVC/2013/test-vxf.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-wkdb.vcxproj
 delete mode 100644 build/MSVC/2013/test-wkdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-wvdb-dll-md.vcxproj
 delete mode 100644 build/MSVC/2013/test-wvdb-dll-md.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-wvdb-dll.vcxproj
 delete mode 100644 build/MSVC/2013/test-wvdb-dll.vcxproj.user
 delete mode 100644 build/MSVC/2013/test-wvdb.vcxproj
 delete mode 100644 build/MSVC/2013/test-wvdb.vcxproj.user
 delete mode 100644 build/MSVC/2013/tui.vcxproj
 delete mode 100644 build/MSVC/2013/tui.vcxproj.user
 delete mode 100644 build/MSVC/2013/tui_cpp.vcxproj
 delete mode 100644 build/MSVC/2013/tui_cpp.vcxproj.user
 delete mode 100644 build/MSVC/2013/vdb-common.props
 delete mode 100644 build/MSVC/2013/wb-test-kfg.vcxproj
 delete mode 100644 build/MSVC/2013/wb-test-kfg.vcxproj.user
 delete mode 100644 build/MSVC/2013/xfs.vcxproj
 delete mode 100644 build/MSVC/2013/zlib.vcxproj
 delete mode 100644 build/MSVC/2013/zlib.vcxproj.user
 delete mode 100644 build/Makefile.mac
 delete mode 100644 build/Makefile.sun
 delete mode 100644 build/Makefile.sun.cc
 delete mode 100644 build/Makefile.sun.gcc
 delete mode 100644 build/Makefile.vc++
 copy test/kfg/config.linux.kfg => build/Makefile.vers (95%)
 delete mode 100644 build/Makefile.win
 delete mode 100755 build/sun-c++.sh
 delete mode 100755 build/sun-cc.sh
 delete mode 100755 build/win-cc.sh
 delete mode 100644 interfaces/ext/bzlib.h
 delete mode 100644 interfaces/ext/hdf5/H5ACpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5AbstractDs.h
 delete mode 100644 interfaces/ext/hdf5/H5Apublic.h
 delete mode 100644 interfaces/ext/hdf5/H5ArrayType.h
 delete mode 100644 interfaces/ext/hdf5/H5AtomType.h
 delete mode 100644 interfaces/ext/hdf5/H5Attribute.h
 delete mode 100644 interfaces/ext/hdf5/H5Classes.h
 delete mode 100644 interfaces/ext/hdf5/H5CommonFG.h
 delete mode 100644 interfaces/ext/hdf5/H5CompType.h
 delete mode 100644 interfaces/ext/hdf5/H5Cpp.h
 delete mode 100644 interfaces/ext/hdf5/H5CppDoc.h
 delete mode 100644 interfaces/ext/hdf5/H5Cpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5DSpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5DataSet.h
 delete mode 100644 interfaces/ext/hdf5/H5DataSpace.h
 delete mode 100644 interfaces/ext/hdf5/H5DataType.h
 delete mode 100644 interfaces/ext/hdf5/H5DcreatProp.h
 delete mode 100644 interfaces/ext/hdf5/H5Dpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5DxferProp.h
 delete mode 100644 interfaces/ext/hdf5/H5EnumType.h
 delete mode 100644 interfaces/ext/hdf5/H5Epubgen.h
 delete mode 100644 interfaces/ext/hdf5/H5Epublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Exception.h
 delete mode 100644 interfaces/ext/hdf5/H5FDcore.h
 delete mode 100644 interfaces/ext/hdf5/H5FDdirect.h
 delete mode 100644 interfaces/ext/hdf5/H5FDfamily.h
 delete mode 100644 interfaces/ext/hdf5/H5FDlog.h
 delete mode 100644 interfaces/ext/hdf5/H5FDmpi.h
 delete mode 100644 interfaces/ext/hdf5/H5FDmpio.h
 delete mode 100644 interfaces/ext/hdf5/H5FDmpiposix.h
 delete mode 100644 interfaces/ext/hdf5/H5FDmulti.h
 delete mode 100644 interfaces/ext/hdf5/H5FDpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5FDsec2.h
 delete mode 100644 interfaces/ext/hdf5/H5FDstdio.h
 delete mode 100644 interfaces/ext/hdf5/H5FaccProp.h
 delete mode 100644 interfaces/ext/hdf5/H5FcreatProp.h
 delete mode 100644 interfaces/ext/hdf5/H5File.h
 delete mode 100644 interfaces/ext/hdf5/H5FloatType.h
 delete mode 100644 interfaces/ext/hdf5/H5Fpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Gpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Group.h
 delete mode 100644 interfaces/ext/hdf5/H5IMpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5IdComponent.h
 delete mode 100644 interfaces/ext/hdf5/H5Include.h
 delete mode 100644 interfaces/ext/hdf5/H5IntType.h
 delete mode 100644 interfaces/ext/hdf5/H5Ipublic.h
 delete mode 100644 interfaces/ext/hdf5/H5LTpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Library.h
 delete mode 100644 interfaces/ext/hdf5/H5Lpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5MMpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Object.h
 delete mode 100644 interfaces/ext/hdf5/H5Opublic.h
 delete mode 100644 interfaces/ext/hdf5/H5PTpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5PacketTable.h
 delete mode 100644 interfaces/ext/hdf5/H5Ppublic.h
 delete mode 100644 interfaces/ext/hdf5/H5PredType.h
 delete mode 100644 interfaces/ext/hdf5/H5PropList.h
 delete mode 100644 interfaces/ext/hdf5/H5Rpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Spublic.h
 delete mode 100644 interfaces/ext/hdf5/H5StrType.h
 delete mode 100644 interfaces/ext/hdf5/H5TBpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5Tpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5VarLenType.h
 delete mode 100644 interfaces/ext/hdf5/H5Zpublic.h
 delete mode 100644 interfaces/ext/hdf5/H5api_adpt.h
 delete mode 100644 interfaces/ext/hdf5/H5f90i.h
 delete mode 100644 interfaces/ext/hdf5/H5f90i_gen.h
 delete mode 100644 interfaces/ext/hdf5/H5overflow.h
 delete mode 100644 interfaces/ext/hdf5/H5pubconf.h
 delete mode 100644 interfaces/ext/hdf5/H5public.h
 delete mode 100644 interfaces/ext/hdf5/H5version.h
 delete mode 100644 interfaces/ext/hdf5/h5_dble_interface.mod
 delete mode 100644 interfaces/ext/hdf5/h5a.mod
 delete mode 100644 interfaces/ext/hdf5/h5d.mod
 delete mode 100644 interfaces/ext/hdf5/h5e.mod
 delete mode 100644 interfaces/ext/hdf5/h5f.mod
 delete mode 100644 interfaces/ext/hdf5/h5fortran_types.mod
 delete mode 100644 interfaces/ext/hdf5/h5g.mod
 delete mode 100644 interfaces/ext/hdf5/h5global.mod
 delete mode 100644 interfaces/ext/hdf5/h5i.mod
 delete mode 100644 interfaces/ext/hdf5/h5im.mod
 delete mode 100644 interfaces/ext/hdf5/h5l.mod
 delete mode 100644 interfaces/ext/hdf5/h5lib.mod
 delete mode 100644 interfaces/ext/hdf5/h5lt.mod
 delete mode 100644 interfaces/ext/hdf5/h5o.mod
 delete mode 100644 interfaces/ext/hdf5/h5p.mod
 delete mode 100644 interfaces/ext/hdf5/h5r.mod
 delete mode 100644 interfaces/ext/hdf5/h5s.mod
 delete mode 100644 interfaces/ext/hdf5/h5t.mod
 delete mode 100644 interfaces/ext/hdf5/h5tb.mod
 delete mode 100644 interfaces/ext/hdf5/h5z.mod
 delete mode 100644 interfaces/ext/hdf5/hdf5.h
 delete mode 100644 interfaces/ext/hdf5/hdf5.mod
 delete mode 100644 interfaces/ext/hdf5/hdf5_hl.h
 delete mode 100644 interfaces/ext/libxml/DOCBparser.h
 delete mode 100644 interfaces/ext/libxml/HTMLparser.h
 delete mode 100644 interfaces/ext/libxml/HTMLtree.h
 delete mode 100644 interfaces/ext/libxml/SAX.h
 delete mode 100644 interfaces/ext/libxml/SAX2.h
 delete mode 100644 interfaces/ext/libxml/c14n.h
 delete mode 100644 interfaces/ext/libxml/catalog.h
 delete mode 100644 interfaces/ext/libxml/chvalid.h
 delete mode 100644 interfaces/ext/libxml/debugXML.h
 delete mode 100644 interfaces/ext/libxml/dict.h
 delete mode 100644 interfaces/ext/libxml/encoding.h
 delete mode 100644 interfaces/ext/libxml/entities.h
 delete mode 100644 interfaces/ext/libxml/globals.h
 delete mode 100644 interfaces/ext/libxml/hash.h
 delete mode 100644 interfaces/ext/libxml/list.h
 delete mode 100644 interfaces/ext/libxml/nanoftp.h
 delete mode 100644 interfaces/ext/libxml/nanohttp.h
 delete mode 100644 interfaces/ext/libxml/parser.h
 delete mode 100644 interfaces/ext/libxml/parserInternals.h
 delete mode 100644 interfaces/ext/libxml/pattern.h
 delete mode 100644 interfaces/ext/libxml/relaxng.h
 delete mode 100644 interfaces/ext/libxml/schemasInternals.h
 delete mode 100644 interfaces/ext/libxml/schematron.h
 delete mode 100644 interfaces/ext/libxml/threads.h
 delete mode 100644 interfaces/ext/libxml/tree.h
 delete mode 100644 interfaces/ext/libxml/uri.h
 delete mode 100644 interfaces/ext/libxml/valid.h
 delete mode 100644 interfaces/ext/libxml/xinclude.h
 delete mode 100644 interfaces/ext/libxml/xlink.h
 delete mode 100644 interfaces/ext/libxml/xmlIO.h
 delete mode 100644 interfaces/ext/libxml/xmlautomata.h
 delete mode 100644 interfaces/ext/libxml/xmlerror.h
 delete mode 100644 interfaces/ext/libxml/xmlexports.h
 delete mode 100644 interfaces/ext/libxml/xmlmemory.h
 delete mode 100644 interfaces/ext/libxml/xmlmodule.h
 delete mode 100644 interfaces/ext/libxml/xmlreader.h
 delete mode 100644 interfaces/ext/libxml/xmlregexp.h
 delete mode 100644 interfaces/ext/libxml/xmlsave.h
 delete mode 100644 interfaces/ext/libxml/xmlschemas.h
 delete mode 100644 interfaces/ext/libxml/xmlschemastypes.h
 delete mode 100644 interfaces/ext/libxml/xmlstring.h
 delete mode 100644 interfaces/ext/libxml/xmlunicode.h
 delete mode 100644 interfaces/ext/libxml/xmlversion.h
 delete mode 100644 interfaces/ext/libxml/xmlwriter.h
 delete mode 100644 interfaces/ext/libxml/xpath.h
 delete mode 100644 interfaces/ext/libxml/xpathInternals.h
 delete mode 100644 interfaces/ext/libxml/xpointer.h
 delete mode 100644 interfaces/ext/magic.h
 delete mode 100644 interfaces/ext/regex.h
 delete mode 100644 interfaces/ext/ricehdf.h
 delete mode 100644 interfaces/ext/zconf.h
 delete mode 100644 interfaces/ext/zlib.h
 create mode 100644 interfaces/sra/generic-fastq.vschema
 delete mode 100644 libs/ext/Makefile
 delete mode 100644 libs/ext/bzip2/.gitignore
 delete mode 100644 libs/ext/bzip2/LICENSE
 delete mode 100644 libs/ext/bzip2/Makefile
 delete mode 100644 libs/ext/bzip2/blocksort.c
 delete mode 100644 libs/ext/bzip2/bzip2-1.0.6.diff
 delete mode 100644 libs/ext/bzip2/bzip2.c
 delete mode 100644 libs/ext/bzip2/bzip2recover.c
 delete mode 100644 libs/ext/bzip2/bzlib.c
 delete mode 100644 libs/ext/bzip2/bzlib.h
 delete mode 100644 libs/ext/bzip2/bzlib_private.h
 delete mode 100644 libs/ext/bzip2/compress.c
 delete mode 100644 libs/ext/bzip2/crctable.c
 delete mode 100644 libs/ext/bzip2/decompress.c
 delete mode 100644 libs/ext/bzip2/dlltest.c
 delete mode 100644 libs/ext/bzip2/huffman.c
 delete mode 100644 libs/ext/bzip2/mk251.c
 delete mode 100644 libs/ext/bzip2/randtable.c
 delete mode 100644 libs/ext/bzip2/spewG.c
 delete mode 100644 libs/ext/bzip2/unzcrash.c
 delete mode 100644 libs/ext/magic/.gitignore
 delete mode 100644 libs/ext/magic/Makefile
 delete mode 100644 libs/ext/magic/apprentice.c
 delete mode 100644 libs/ext/magic/apptype.c
 delete mode 100644 libs/ext/magic/ascmagic.c
 delete mode 100644 libs/ext/magic/asprintf.c
 delete mode 100644 libs/ext/magic/cdf.c
 delete mode 100644 libs/ext/magic/cdf.h
 delete mode 100644 libs/ext/magic/cdf_time.c
 delete mode 100644 libs/ext/magic/compress.c
 delete mode 100644 libs/ext/magic/config.h
 delete mode 100644 libs/ext/magic/elfclass.h
 delete mode 100644 libs/ext/magic/encoding.c
 delete mode 100644 libs/ext/magic/file.c
 delete mode 100644 libs/ext/magic/file.h
 delete mode 100644 libs/ext/magic/file_opts.h
 delete mode 100644 libs/ext/magic/fsmagic.c
 delete mode 100644 libs/ext/magic/funcs.c
 delete mode 100644 libs/ext/magic/getopt_long.c
 delete mode 100644 libs/ext/magic/is_tar.c
 delete mode 100644 libs/ext/magic/libmagic.vers
 delete mode 100644 libs/ext/magic/magic.c
 delete mode 100644 libs/ext/magic/mygetopt.h
 delete mode 100644 libs/ext/magic/names.h
 delete mode 100644 libs/ext/magic/patchlevel.h
 delete mode 100644 libs/ext/magic/print.c
 delete mode 100644 libs/ext/magic/readcdf.c
 delete mode 100644 libs/ext/magic/readelf.c
 delete mode 100644 libs/ext/magic/readelf.h
 delete mode 100644 libs/ext/magic/softmagic.c
 delete mode 100644 libs/ext/magic/strlcat.c
 delete mode 100644 libs/ext/magic/strlcpy.c
 delete mode 100644 libs/ext/magic/tar.h
 delete mode 100644 libs/ext/magic/vasprintf.c
 delete mode 100644 libs/ext/regex/Makefile
 delete mode 100755 libs/ext/regex/libregex.def
 delete mode 100644 libs/ext/regex/regcomp.c
 delete mode 100644 libs/ext/regex/regex.c
 delete mode 100644 libs/ext/regex/regex_internal.c
 delete mode 100644 libs/ext/regex/regex_internal.h
 delete mode 100644 libs/ext/regex/regexec.c
 delete mode 100644 libs/ext/szip/.gitignore
 delete mode 100644 libs/ext/szip/Makefile
 delete mode 100644 libs/ext/zlib/.gitignore
 delete mode 100644 libs/ext/zlib/Makefile
 delete mode 100644 libs/ext/zlib/adler32.c
 delete mode 100644 libs/ext/zlib/compress.c
 delete mode 100644 libs/ext/zlib/crc32.c
 delete mode 100644 libs/ext/zlib/crc32.h
 delete mode 100644 libs/ext/zlib/deflate.c
 delete mode 100644 libs/ext/zlib/deflate.h
 delete mode 100644 libs/ext/zlib/gzclose.c
 delete mode 100644 libs/ext/zlib/gzguts.h
 delete mode 100644 libs/ext/zlib/gzlib.c
 delete mode 100644 libs/ext/zlib/gzread.c
 delete mode 100644 libs/ext/zlib/gzwrite.c
 delete mode 100644 libs/ext/zlib/infback.c
 delete mode 100644 libs/ext/zlib/inffast.c
 delete mode 100644 libs/ext/zlib/inffast.h
 delete mode 100644 libs/ext/zlib/inffixed.h
 delete mode 100644 libs/ext/zlib/inflate.c
 delete mode 100644 libs/ext/zlib/inflate.h
 delete mode 100644 libs/ext/zlib/inftrees.c
 delete mode 100644 libs/ext/zlib/inftrees.h
 delete mode 100644 libs/ext/zlib/sun/stdlib.h
 delete mode 100644 libs/ext/zlib/trees.c
 delete mode 100644 libs/ext/zlib/trees.h
 delete mode 100644 libs/ext/zlib/uncompr.c
 delete mode 100644 libs/ext/zlib/zconf.h
 delete mode 100644 libs/ext/zlib/zlib-1.2.8.diff
 delete mode 100644 libs/ext/zlib/zlib.h
 delete mode 100644 libs/ext/zlib/zutil.c
 delete mode 100644 libs/ext/zlib/zutil.h
 delete mode 100644 libs/hdf5/libkdf5.vers
 delete mode 100644 libs/kdb/libwkdb.vers.h
 delete mode 100644 libs/kns/libkns.vers
 delete mode 100644 libs/kns/libkns.vers.h
 delete mode 100644 libs/ncbi-vdb/libncbi-wvdb.vers
 delete mode 100644 libs/ngs-c++/libncbi-ngs-c++.vers
 delete mode 100644 libs/ngs-jni/libncbi-ngs-jni.vers
 create mode 100644 libs/ngs/NGS_FragmentBlob.c
 create mode 100644 libs/ngs/NGS_FragmentBlob.h
 create mode 100644 libs/ngs/NGS_FragmentBlobIterator.c
 copy libs/{ngs-jni/jni_String.h => ngs/NGS_FragmentBlobIterator.h} (55%)
 copy libs/{axf/not-my-row.c => sraxf/tokenize-spot_name-generic-fastq.c} (55%)
 delete mode 100644 libs/svdb/libsvdb.vers
 delete mode 100644 libs/vdb/libwvdb.vers.h
 delete mode 100644 test/ext/Makefile
 delete mode 100644 test/ext/magic/Makefile
 delete mode 100644 test/ext/magic/magictest.cpp
 copy libs/kfg/kfg-priv.h => test/kapp/report-kns-agent.c (75%)
 copy build/wait_for_file.sh => test/kapp/run-kns-agent.sh (59%)
 create mode 100644 test/kfg/flat-sra-kfg.cpp
 create mode 100644 test/kfg/flat-sra-kfg/aux_root/empty.kfg
 create mode 100644 test/kfg/flat-sra-kfg/new/sraFlat.kfg
 create mode 100644 test/kfg/flat-sra-kfg/old/fuse1000.kfg
 create mode 100644 test/klib/test-vnamelist.cpp
 copy {libs => test}/loader/sequence-writer.c (100%)
 create mode 100644 test/ngs-java/ngs_test_lib_load.java
 create mode 100644 test/ngs/data/.gitignore
 create mode 100644 test/ngs/ngstest_fragmentblob.cpp
 create mode 100644 test/ngs/ngstest_makedb.cpp
 create mode 100644 test/vdb/db/blob_val_inv_chsum.sra
 create mode 100644 test/vdb/test-VDB-3060.cpp
 create mode 100644 test/vdb/test-blob-val.cpp
 mode change 100755 => 100644 test/vdb/test-sparse-col.cpp
 mode change 100755 => 100644 test/vdb/test-wvdb.cpp
 create mode 100644 test/vfs/caching-kfg/incomplete.kfg
 copy interfaces/.gitignore => test/vfs/repo/wgs/WGS/YY/ZZ/YYZZ10 (100%)
 copy test/vfs/{ncbi/public/refseq => repo/wgs/WGS/YY/ZZ}/YYZZ99 (100%)
 copy interfaces/.gitignore => test/vfs/repo/wgs2/WGS/YY/ZZ/YYZZ20 (100%)
 copy test/vfs/{ncbi/public/refseq => repo/wgs2/WGS/YY/ZZ}/YYZZ99 (100%)
 create mode 100644 test/vfs/test-caching.cpp

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ncbi-vdb.git



More information about the debian-med-commit mailing list