[med-svn] [ncbi-vdb] 03/06: Fix spelling
Andreas Tille
tille at debian.org
Fri Jul 22 21:30:17 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository ncbi-vdb.
commit 4597feca3862bc18102919b0347d3196ec741a04
Author: Andreas Tille <tille at debian.org>
Date: Fri Jul 22 18:11:03 2016 +0200
Fix spelling
---
debian/patches/series | 1 +
debian/patches/spelling.patch | 235 ++++++++++++++++++++++++++++++++++++++++++
2 files changed, 236 insertions(+)
diff --git a/debian/patches/series b/debian/patches/series
index 872e970..7d3aa9b 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -4,3 +4,4 @@ find_ngs-sdk.patch
skip_failing_test.patch
fix_install_target.patch
use_debian_packaged_zlib.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..f463dad
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,235 @@
+--- a/libs/krypto/encfilev2.c
++++ b/libs/krypto/encfilev2.c
+@@ -970,7 +970,7 @@ rc_t KEncFileBlockRead (KEncFile * self,
+
+ PLOGERR (klogErr, (klogErr, vrc, "read missing block at "
+ "block number '$(I)' encrypted position "
+- "$(E) decrypted postion $(D)",
++ "$(E) decrypted position $(D)",
+ "I=%lu,E=%lu,D=%lu", block_id, epos,
+ dpos));
+ if ( rc == 0 )
+--- a/interfaces/sra/fastq.h
++++ b/interfaces/sra/fastq.h
+@@ -80,7 +80,7 @@ SRA_RD_EXTERN rc_t CC FastqReaderFirstSp
+
+ /* SeekSpot
+ * set current spot
+- * if error occured current spot position becomes 0
++ * if error occurred current spot position becomes 0
+ */
+ SRA_RD_EXTERN rc_t CC FastqReaderSeekSpot(const FastqReader* self, spotid_t spot);
+
+--- a/interfaces/sra/illumina.h
++++ b/interfaces/sra/illumina.h
+@@ -75,7 +75,7 @@ SRA_RD_EXTERN rc_t CC IlluminaReaderFirs
+
+ /* SeekSpot
+ * set current spot
+- * if error occured current spot position becomes 0
++ * if error occurred current spot position becomes 0
+ */
+ SRA_RD_EXTERN rc_t CC IlluminaReaderSeekSpot(const IlluminaReader* self, spotid_t spot);
+
+--- a/interfaces/sra/sff.h
++++ b/interfaces/sra/sff.h
+@@ -68,7 +68,7 @@ SRA_RD_EXTERN rc_t CC SFFReaderFirstSpot
+
+ /* SeekSpot
+ * set current spot
+- * if error occured current spot position becomes 0
++ * if error occurred current spot position becomes 0
+ */
+ SRA_RD_EXTERN rc_t CC SFFReaderSeekSpot(const SFFReader* self, spotid_t spot);
+
+--- a/interfaces/align/align-access.h
++++ b/interfaces/align/align-access.h
+@@ -52,7 +52,7 @@ struct VPath;
+ typedef uint8_t AlignmentStrandDirection;
+ enum
+ {
+- asd_Unknown, /* e.g. an error occured */
++ asd_Unknown, /* e.g. an error occurred */
+ asd_Forward = 'F',
+ asd_Reverse = 'R'
+ };
+--- a/interfaces/sra/abi.h
++++ b/interfaces/sra/abi.h
+@@ -72,7 +72,7 @@ SRA_RD_EXTERN rc_t CC AbsolidReaderFirst
+
+ /* SeekSpot
+ * set current spot
+- * if error occured current spot position becomes 0
++ * if error occurred current spot position becomes 0
+ */
+ SRA_RD_EXTERN rc_t CC AbsolidReaderSeekSpot(const AbsolidReader* self, spotid_t spot);
+
+--- a/interfaces/svdb/svdb.h
++++ b/interfaces/svdb/svdb.h
+@@ -76,10 +76,10 @@ SVDB_EXTERN void CC svdb_close( void * s
+
+ /*****************************************************************************
+ (4)
+- returns the last error as plain-text if one occured
++ returns the last error as plain-text if one occurred
+
+ ! NULL ptr will be ignored !
+- returns empty string if no error occured or self == NULL
++ returns empty string if no error occurred or self == NULL
+ */
+ SVDB_EXTERN const char * CC svdb_last_err( void );
+
+--- a/libs/blast/blast-mgr.c
++++ b/libs/blast/blast-mgr.c
+@@ -470,7 +470,7 @@ LIB_EXPORT uint32_t VdbBlastMgrKConfigPr
+ }
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when printing Configiration");
++ LOGERR(klogInt, rc, "An error occurred when printing Configiration");
+ return eVdbBlastErr;
+ }
+
+@@ -483,7 +483,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKDbgSe
+ rc_t rc = KDbgSetString(string);
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when setting KDbgString");
++ LOGERR(klogInt, rc, "An error occurred when setting KDbgString");
+ return eVdbBlastErr;
+ }
+
+@@ -496,7 +496,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
+ rc_t rc = KLogHandlerSet(writer, data);
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when setting KLogHandler");
++ LOGERR(klogInt, rc, "An error occurred when setting KLogHandler");
+ return eVdbBlastErr;
+ }
+
+@@ -510,7 +510,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KLogHandler to StdErr");
++ klogInt, rc, "An error occurred when setting KLogHandler to StdErr");
+ return eVdbBlastErr;
+ }
+
+@@ -524,7 +524,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogHa
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KLogHandler to StdOut");
++ klogInt, rc, "An error occurred when setting KLogHandler to StdOut");
+ return eVdbBlastErr;
+ }
+
+@@ -537,7 +537,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogLi
+ rc_t rc = KLogLibHandlerSet(writer, data);
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when setting KLogLibHandler");
++ LOGERR(klogInt, rc, "An error occurred when setting KLogLibHandler");
+ return eVdbBlastErr;
+ }
+
+@@ -551,7 +551,7 @@ uint32_t CC VdbBlastMgrKLogLibHandlerSet
+
+ if (rc != 0) {
+ LOGERR(klogInt, rc,
+- "An error occured when setting KLogLibHandler to StdErr");
++ "An error occurred when setting KLogLibHandler to StdErr");
+ return eVdbBlastErr;
+ }
+
+@@ -565,7 +565,7 @@ uint32_t CC VdbBlastMgrKLogLibHandlerSet
+
+ if (rc != 0) {
+ LOGERR(klogInt, rc,
+- "An error occured when setting KLogLibHandler to StdOut");
++ "An error occurred when setting KLogLibHandler to StdOut");
+ return eVdbBlastErr;
+ }
+
+@@ -578,7 +578,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKOutHa
+ rc_t rc = KOutHandlerSet(writer, data);
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when setting KOutHandler");
++ LOGERR(klogInt, rc, "An error occurred when setting KOutHandler");
+ return eVdbBlastErr;
+ }
+
+@@ -592,7 +592,7 @@ uint32_t CC VdbBlastMgrKOutHandlerSetStd
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KOutHandler to StdErr");
++ klogInt, rc, "An error occurred when setting KOutHandler to StdErr");
+ return eVdbBlastErr;
+ }
+
+@@ -606,7 +606,7 @@ uint32_t CC VdbBlastMgrKOutHandlerSetStd
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KOutHandler to StdOut");
++ klogInt, rc, "An error occurred when setting KOutHandler to StdOut");
+ return eVdbBlastErr;
+ }
+
+@@ -620,7 +620,7 @@ uint32_t CC VdbBlastMgrKStsHandlerSetStd
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KStsHandler to StdErr");
++ klogInt, rc, "An error occurred when setting KStsHandler to StdErr");
+ return eVdbBlastErr;
+ }
+
+@@ -634,7 +634,7 @@ uint32_t CC VdbBlastMgrKStsHandlerSetStd
+
+ if (rc != 0) {
+ LOGERR(
+- klogInt, rc, "An error occured when setting KStsHandler to StdOut");
++ klogInt, rc, "An error occurred when setting KStsHandler to StdOut");
+ return eVdbBlastErr;
+ }
+
+@@ -647,7 +647,7 @@ LIB_EXPORT uint32_t CC VdbBlastMgrKLogLe
+ rc_t rc = KLogLevelSet(lvl);
+
+ if (rc != 0) {
+- LOGERR(klogInt, rc, "An error occured when setting KLogLevel");
++ LOGERR(klogInt, rc, "An error occurred when setting KLogLevel");
+ return eVdbBlastErr;
+ }
+
+--- a/libs/kns/linux/sysendpoint.c
++++ b/libs/kns/linux/sysendpoint.c
+@@ -131,10 +131,10 @@ rc_t CC KNSManagerInitDNSEndpoint ( stru
+ rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcEmpty );
+ break;
+ #endif
+- case NO_RECOVERY: /* A nonrecoverable name server error occured */
++ case NO_RECOVERY: /* A nonrecoverable name server error occurred */
+ rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcDestroyed );
+ break;
+- case TRY_AGAIN: /* A temporary error occured on an authoritative name server. Try again later */
++ case TRY_AGAIN: /* A temporary error occurred on an authoritative name server. Try again later */
+ rc = RC ( rcNS, rcNoTarg, rcValidating, rcConnection, rcBusy );
+ break;
+ case ERANGE:
+--- a/libs/sra/reader-cmn.h
++++ b/libs/sra/reader-cmn.h
+@@ -100,7 +100,7 @@ rc_t SRAReaderFirstSpot(const SRAReader*
+
+ /* SeekSpot
+ * set current spot
+- * if error occured current spot position becomes 0
++ * if error occurred current spot position becomes 0
+ */
+ rc_t SRAReaderSeekSpot(const SRAReader* self, spotid_t spot);
+
--
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