[med-svn] [metabit] 01/01: Needs to sort out how to deal with MarkDuplicates.jar

[Andreas Tille]

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in repository metabit.

commit d198493d53fc6b4ae3d8b1703f4bcbc5722c2236
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jul 25 22:35:17 2016 +0200

    Needs to sort out how to deal with MarkDuplicates.jar
---
 debian/changelog | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 63a7173..266663c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,4 +2,19 @@ metabit (0.0+20160617-1) UNRELEASED; urgency=medium
 
   * Initial release (Closes: #<bug>)
 
+  TODO:
+  $ metabit fastexample.yaml
+  Building metaBIT pipeline ...
+  MetaBIT running now!
+    - Checking file dependencies ...
+  Errors detected during graph construction (max 20 shown):
+        Required file does not exist, and is not created by a node:
+                Filename: /home/andreas/install/jar_root/MarkDuplicates.jar
+                Dependent node(s): <MarkDuplicates: reads.paired.bowtie2out.filter.sorted.bam>
+                                   <MarkDuplicates: reads.singles.bowtie2out.sorted.bam>
+
+  picard-tools contains /usr/share/java/picard.jar with class:
+      picard/sam/markduplicates/MarkDuplicates.class
+
+
  -- Andreas Tille <tille at debian.org>  Mon, 25 Jul 2016 14:09:29 +0200

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