[med-svn] [ugene] branch upstream updated (8b9d86f -> 20c61aa)
Andreas Tille
tille at debian.org
Wed Jul 27 21:02:24 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch upstream
in repository ugene.
from 8b9d86f Imported Upstream version 1.20.0+dfsg
new 20c61aa Imported Upstream version 1.21.0+dfsg
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
LICENSE.3rd_party | 7 +
installer/_common_data/humimit_custom.pri | 60 +
.../U2Algorithm/src/misc/BinaryFindOpenCL.cpp | 2 +-
.../U2Algorithm/src/misc/BinaryFindOpenCL.h | 2 +-
src/corelibs/U2Algorithm/src/misc/BitsTable.cpp | 2 +-
src/corelibs/U2Algorithm/src/misc/BitsTable.h | 2 +-
.../U2Algorithm/src/misc/CDSearchTaskFactory.h | 2 +-
.../U2Algorithm/src/misc/DnaAssemblyMultiTask.cpp | 2 +-
.../U2Algorithm/src/misc/DnaAssemblyMultiTask.h | 2 +-
src/corelibs/U2Algorithm/src/misc/DynTable.h | 2 +-
src/corelibs/U2Algorithm/src/misc/EnzymeModel.h | 2 +-
.../U2Algorithm/src/misc/FindAlgorithm.cpp | 2 +-
src/corelibs/U2Algorithm/src/misc/FindAlgorithm.h | 2 +-
.../U2Algorithm/src/misc/FindAlgorithmTask.cpp | 2 +-
.../U2Algorithm/src/misc/FindAlgorithmTask.h | 2 +-
.../src/misc/GenomeAssemblyMultiTask.cpp | 2 +-
.../U2Algorithm/src/misc/GenomeAssemblyMultiTask.h | 2 +-
.../U2Algorithm/src/misc/RepeatFinderSettings.h | 2 +-
.../U2Algorithm/src/misc/RepeatFinderTaskFactory.h | 2 +-
src/corelibs/U2Algorithm/src/misc/RollingArray.h | 2 +-
src/corelibs/U2Algorithm/src/misc/RollingMatrix.h | 2 +-
.../src/misc/SequenceContentFilterTask.cpp | 2 +-
.../src/misc/SequenceContentFilterTask.h | 2 +-
src/corelibs/U2Algorithm/src/misc/SyncSort.h | 2 +-
.../src/molecular_geometry/GeomUtils.cpp | 2 +-
.../U2Algorithm/src/molecular_geometry/GeomUtils.h | 2 +-
.../src/molecular_geometry/MolecularSurface.cpp | 2 +-
.../src/molecular_geometry/MolecularSurface.h | 2 +-
.../MolecularSurfaceFactoryRegistry.cpp | 2 +-
.../MolecularSurfaceFactoryRegistry.h | 2 +-
.../src/molecular_geometry/VanDerWaalsSurface.cpp | 2 +-
.../src/molecular_geometry/VanDerWaalsSurface.h | 2 +-
.../src/msa_alignment/AbstractAlignmentTask.cpp | 2 +-
.../src/msa_alignment/AbstractAlignmentTask.h | 2 +-
.../AlignSequencesToAlignmentTaskSettings.cpp | 2 +-
.../AlignSequencesToAlignmentTaskSettings.h | 2 +-
.../msa_alignment/BaseAlignmentAlgorithmIds.cpp | 2 +-
.../src/msa_alignment/BaseAlignmentAlgorithmIds.h | 2 +-
.../src/msa_alignment/SimpleAddingToAlignment.cpp | 2 +-
.../src/msa_alignment/SimpleAddingToAlignment.h | 2 +-
.../src/pairwise_alignment/NWAligner.cpp | 2 +-
.../U2Algorithm/src/pairwise_alignment/NWAligner.h | 2 +-
.../src/pairwise_alignment/PairwiseAligner.cpp | 2 +-
.../src/pairwise_alignment/PairwiseAligner.h | 2 +-
.../pairwise_alignment/PairwiseAlignmentTask.cpp | 2 +-
.../src/pairwise_alignment/PairwiseAlignmentTask.h | 2 +-
.../src/phyltree/CreatePhyTreeSettings.cpp | 2 +-
.../src/phyltree/CreatePhyTreeSettings.h | 2 +-
.../U2Algorithm/src/phyltree/PhyTreeGenerator.h | 2 +-
.../src/phyltree/PhyTreeGeneratorRegistry.cpp | 2 +-
.../src/phyltree/PhyTreeGeneratorRegistry.h | 2 +-
.../src/phyltree/PhyTreeGeneratorTask.cpp | 2 +-
.../src/phyltree/PhyTreeGeneratorTask.h | 2 +-
.../src/registry/AlignmentAlgorithmsRegistry.cpp | 2 +-
.../src/registry/AlignmentAlgorithmsRegistry.h | 2 +-
.../src/registry/CDSearchTaskFactoryRegistry.h | 2 +-
.../U2Algorithm/src/registry/CudaGpuRegistry.cpp | 2 +-
.../U2Algorithm/src/registry/CudaGpuRegistry.h | 2 +-
.../src/registry/DnaAssemblyAlgRegistry.cpp | 2 +-
.../src/registry/DnaAssemblyAlgRegistry.h | 2 +-
.../U2Algorithm/src/registry/DnaAssemblyTask.cpp | 2 +-
.../U2Algorithm/src/registry/DnaAssemblyTask.h | 2 +-
.../src/registry/GenomeAssemblyRegistry.cpp | 2 +-
.../src/registry/GenomeAssemblyRegistry.h | 2 +-
.../U2Algorithm/src/registry/OpenCLGpuRegistry.cpp | 2 +-
.../U2Algorithm/src/registry/OpenCLGpuRegistry.h | 2 +-
.../registry/RepeatFinderTaskFactoryRegistry.cpp | 2 +-
.../src/registry/RepeatFinderTaskFactoryRegistry.h | 2 +-
.../src/registry/SecStructPredictAlgRegistry.cpp | 2 +-
.../src/registry/SecStructPredictAlgRegistry.h | 2 +-
.../src/registry/SecStructPredictTask.cpp | 2 +-
.../src/registry/SecStructPredictTask.h | 2 +-
.../src/registry/SplicedAlignmentTask.cpp | 2 +-
.../src/registry/SplicedAlignmentTask.h | 2 +-
.../src/registry/SplicedAlignmentTaskRegistry.cpp | 2 +-
.../src/registry/SplicedAlignmentTaskRegistry.h | 2 +-
.../src/registry/SubstMatrixRegistry.cpp | 2 +-
.../U2Algorithm/src/registry/SubstMatrixRegistry.h | 2 +-
.../smith_waterman/SWMulAlignExternalPropTag.cpp | 2 +-
.../src/smith_waterman/SWMulAlignExternalPropTag.h | 2 +-
.../src/smith_waterman/SWMulAlignResultNamesTag.h | 2 +-
.../SWMulAlignResultNamesTagsRegistry.cpp | 2 +-
.../SWMulAlignResultNamesTagsRegistry.h | 2 +-
.../src/smith_waterman/SWMulAlignSeqPrefixTag.cpp | 2 +-
.../src/smith_waterman/SWMulAlignSeqPrefixTag.h | 2 +-
.../src/smith_waterman/SWMulAlignSubseqPropTag.cpp | 2 +-
.../src/smith_waterman/SWMulAlignSubseqPropTag.h | 2 +-
.../src/smith_waterman/SWResultFilterRegistry.cpp | 2 +-
.../src/smith_waterman/SWResultFilterRegistry.h | 2 +-
.../smith_waterman/SmithWatermanReportCallback.cpp | 5 +-
.../smith_waterman/SmithWatermanReportCallback.h | 2 +-
.../src/smith_waterman/SmithWatermanResult.cpp | 2 +-
.../src/smith_waterman/SmithWatermanResult.h | 2 +-
.../smith_waterman/SmithWatermanResultFilters.cpp | 2 +-
.../smith_waterman/SmithWatermanResultFilters.h | 2 +-
.../src/smith_waterman/SmithWatermanSettings.h | 2 +-
.../src/smith_waterman/SmithWatermanTaskFactory.h | 2 +-
.../SmithWatermanTaskFactoryRegistry.cpp | 2 +-
.../SmithWatermanTaskFactoryRegistry.h | 2 +-
.../src/smith_waterman/SmithWatermanUtil.cpp | 2 +-
.../src/smith_waterman/SmithWatermanUtil.h | 2 +-
.../StructuralAlignmentAlgorithm.cpp | 2 +-
.../StructuralAlignmentAlgorithm.h | 2 +-
.../StructuralAlignmentAlgorithmFactory.cpp | 2 +-
.../StructuralAlignmentAlgorithmFactory.h | 2 +-
.../StructuralAlignmentAlgorithmRegistry.cpp | 2 +-
.../StructuralAlignmentAlgorithmRegistry.h | 2 +-
.../AssemblyConsensusAlgorithm.cpp | 2 +-
.../AssemblyConsensusAlgorithm.h | 2 +-
.../AssemblyConsensusAlgorithmDefault.cpp | 2 +-
.../AssemblyConsensusAlgorithmDefault.h | 2 +-
.../AssemblyConsensusAlgorithmRegistry.cpp | 2 +-
.../AssemblyConsensusAlgorithmRegistry.h | 2 +-
.../AssemblyConsensusAlgorithmSamtools.cpp | 2 +-
.../AssemblyConsensusAlgorithmSamtools.h | 2 +-
.../AssemblyConsensusUtils.cpp | 2 +-
.../AssemblyConsensusUtils.h | 2 +-
.../BuiltInAssemblyConsensusAlgorithms.cpp | 2 +-
.../BuiltInAssemblyConsensusAlgorithms.h | 2 +-
.../U2Algorithm/src/util_gpu/opencl/BinaryFind.cl | 2 +-
.../src/util_gpu/opencl/OpenCLHelper.cpp | 2 +-
.../U2Algorithm/src/util_gpu/opencl/OpenCLHelper.h | 2 +-
.../src/util_gpu/opencl/OpenCLUtils.cpp | 2 +-
.../U2Algorithm/src/util_gpu/opencl/OpenCLUtils.h | 2 +-
.../BuiltInConsensusAlgorithms.cpp | 2 +-
.../BuiltInConsensusAlgorithms.h | 2 +-
.../util_msa_consensus/MSAConsensusAlgorithm.cpp | 2 +-
.../src/util_msa_consensus/MSAConsensusAlgorithm.h | 2 +-
.../MSAConsensusAlgorithmClustal.cpp | 2 +-
.../MSAConsensusAlgorithmClustal.h | 2 +-
.../MSAConsensusAlgorithmDefault.cpp | 2 +-
.../MSAConsensusAlgorithmDefault.h | 2 +-
.../MSAConsensusAlgorithmLevitsky.cpp | 2 +-
.../MSAConsensusAlgorithmLevitsky.h | 2 +-
.../MSAConsensusAlgorithmRegistry.cpp | 2 +-
.../MSAConsensusAlgorithmRegistry.h | 2 +-
.../MSAConsensusAlgorithmStrict.cpp | 2 +-
.../MSAConsensusAlgorithmStrict.h | 2 +-
.../src/util_msa_consensus/MSAConsensusUtils.cpp | 2 +-
.../src/util_msa_consensus/MSAConsensusUtils.h | 2 +-
.../BuiltInDistanceAlgorithms.cpp | 2 +-
.../util_msa_distance/BuiltInDistanceAlgorithms.h | 2 +-
.../src/util_msa_distance/MSADistanceAlgorithm.cpp | 2 +-
.../src/util_msa_distance/MSADistanceAlgorithm.h | 2 +-
.../MSADistanceAlgorithmHamming.cpp | 2 +-
.../MSADistanceAlgorithmHamming.h | 2 +-
.../MSADistanceAlgorithmHammingRevCompl.cpp | 2 +-
.../MSADistanceAlgorithmHammingRevCompl.h | 2 +-
.../MSADistanceAlgorithmRegistry.cpp | 2 +-
.../MSADistanceAlgorithmRegistry.h | 2 +-
.../MSADistanceAlgorithmSimilarity.cpp | 2 +-
.../MSADistanceAlgorithmSimilarity.h | 2 +-
.../src/util_msaedit/CreateSubalignmentTask.cpp | 2 +-
.../src/util_msaedit/CreateSubalignmentTask.h | 2 +-
.../src/util_msaedit/MAlignmentUtilTasks.cpp | 2 +-
.../src/util_msaedit/MAlignmentUtilTasks.h | 2 +-
.../src/util_msaedit/MSAColorScheme.cpp | 2 +-
.../U2Algorithm/src/util_msaedit/MSAColorScheme.h | 2 +-
.../U2Algorithm/src/util_orf/ORFAlgorithmTask.cpp | 2 +-
.../U2Algorithm/src/util_orf/ORFAlgorithmTask.h | 2 +-
.../U2Algorithm/src/util_orf/ORFFinder.cpp | 2 +-
src/corelibs/U2Algorithm/src/util_orf/ORFFinder.h | 2 +-
.../src/util_sarray/SArrayBasedFindTask.cpp | 2 +-
.../src/util_sarray/SArrayBasedFindTask.h | 2 +-
.../U2Algorithm/src/util_sarray/SArrayIndex.cpp | 2 +-
.../U2Algorithm/src/util_sarray/SArrayIndex.h | 2 +-
.../src/util_sarray/SArrayIndexSerializer.cpp | 2 +-
.../src/util_sarray/SArrayIndexSerializer.h | 2 +-
.../BuiltInPWMConversionAlgorithms.cpp | 2 +-
.../BuiltInPWMConversionAlgorithms.h | 2 +-
.../util_weight_matrix/PWMConversionAlgorithm.cpp | 2 +-
.../util_weight_matrix/PWMConversionAlgorithm.h | 2 +-
.../PWMConversionAlgorithmBVH.cpp | 2 +-
.../util_weight_matrix/PWMConversionAlgorithmBVH.h | 2 +-
.../PWMConversionAlgorithmLOD.cpp | 2 +-
.../util_weight_matrix/PWMConversionAlgorithmLOD.h | 2 +-
.../PWMConversionAlgorithmMCH.cpp | 2 +-
.../util_weight_matrix/PWMConversionAlgorithmMCH.h | 2 +-
.../PWMConversionAlgorithmNLG.cpp | 2 +-
.../util_weight_matrix/PWMConversionAlgorithmNLG.h | 2 +-
.../PWMConversionAlgorithmRegistry.cpp | 2 +-
.../PWMConversionAlgorithmRegistry.h | 2 +-
src/corelibs/U2Algorithm/transl/english.ts | 8 +-
src/corelibs/U2Algorithm/transl/russian.ts | 10 +-
src/corelibs/U2Core/U2Core.pro | 2 +
.../U2Core/src/cmdline/CMDLineCoreOptions.cpp | 2 +-
.../U2Core/src/cmdline/CMDLineCoreOptions.h | 2 +-
.../U2Core/src/cmdline/CMDLineHelpProvider.h | 2 +-
.../U2Core/src/cmdline/CMDLineRegistry.cpp | 2 +-
src/corelibs/U2Core/src/cmdline/CMDLineRegistry.h | 2 +-
src/corelibs/U2Core/src/cmdline/CMDLineUtils.cpp | 2 +-
src/corelibs/U2Core/src/cmdline/CMDLineUtils.h | 2 +-
src/corelibs/U2Core/src/datatype/Annotation.cpp | 2 +-
src/corelibs/U2Core/src/datatype/Annotation.h | 2 +-
.../U2Core/src/datatype/AnnotationData.cpp | 2 +-
src/corelibs/U2Core/src/datatype/AnnotationData.h | 2 +-
.../U2Core/src/datatype/AnnotationGroup.cpp | 2 +-
src/corelibs/U2Core/src/datatype/AnnotationGroup.h | 2 +-
.../U2Core/src/datatype/AnnotationModification.cpp | 2 +-
.../U2Core/src/datatype/AnnotationModification.h | 2 +-
.../U2Core/src/datatype/AnnotationSettings.cpp | 2 +-
.../U2Core/src/datatype/AnnotationSettings.h | 2 +-
.../datatype/AnnotationTableObjectConstraints.cpp | 2 +-
.../datatype/AnnotationTableObjectConstraints.h | 2 +-
src/corelibs/U2Core/src/datatype/BaseAlphabets.cpp | 2 +-
.../U2Core/src/datatype/BaseTranslations.cpp | 2 +-
src/corelibs/U2Core/src/datatype/BioStruct3D.cpp | 13 +-
src/corelibs/U2Core/src/datatype/BioStruct3D.h | 3 +-
src/corelibs/U2Core/src/datatype/DIProperties.h | 2 +-
src/corelibs/U2Core/src/datatype/DNAAlphabet.cpp | 2 +-
src/corelibs/U2Core/src/datatype/DNAAlphabet.h | 2 +-
.../src/datatype/DNAAlphabetRegistryImpl.cpp | 2 +-
.../U2Core/src/datatype/DNAAlphabetRegistryImpl.h | 2 +-
src/corelibs/U2Core/src/datatype/DNAChromatogram.h | 2 +-
src/corelibs/U2Core/src/datatype/DNAInfo.cpp | 2 +-
src/corelibs/U2Core/src/datatype/DNAInfo.h | 2 +-
src/corelibs/U2Core/src/datatype/DNAQuality.cpp | 2 +-
src/corelibs/U2Core/src/datatype/DNAQuality.h | 2 +-
src/corelibs/U2Core/src/datatype/DNASequence.cpp | 2 +-
src/corelibs/U2Core/src/datatype/DNASequence.h | 2 +-
.../U2Core/src/datatype/DNASequenceUtils.cpp | 2 +-
.../U2Core/src/datatype/DNASequenceUtils.h | 2 +-
.../U2Core/src/datatype/DNATranslation.cpp | 2 +-
src/corelibs/U2Core/src/datatype/DNATranslation.h | 2 +-
.../U2Core/src/datatype/DNATranslationImpl.cpp | 2 +-
.../U2Core/src/datatype/DNATranslationImpl.h | 2 +-
src/corelibs/U2Core/src/datatype/FeatureColors.cpp | 2 +-
src/corelibs/U2Core/src/datatype/FeatureColors.h | 2 +-
src/corelibs/U2Core/src/datatype/MAlignment.cpp | 2 +-
src/corelibs/U2Core/src/datatype/MAlignment.h | 2 +-
.../U2Core/src/datatype/MAlignmentInfo.cpp | 2 +-
src/corelibs/U2Core/src/datatype/MAlignmentInfo.h | 2 +-
src/corelibs/U2Core/src/datatype/Matrix44.cpp | 2 +-
src/corelibs/U2Core/src/datatype/Matrix44.h | 2 +-
src/corelibs/U2Core/src/datatype/PFMatrix.cpp | 2 +-
src/corelibs/U2Core/src/datatype/PFMatrix.h | 2 +-
src/corelibs/U2Core/src/datatype/PWMatrix.cpp | 2 +-
src/corelibs/U2Core/src/datatype/PWMatrix.h | 2 +-
src/corelibs/U2Core/src/datatype/PhyTree.cpp | 2 +-
src/corelibs/U2Core/src/datatype/PhyTree.h | 2 +-
src/corelibs/U2Core/src/datatype/SMatrix.cpp | 2 +-
src/corelibs/U2Core/src/datatype/SMatrix.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Alphabet.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Assembly.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Attribute.h | 2 +-
.../U2Core/src/datatype/U2CoreAttributes.cpp | 2 +-
.../U2Core/src/datatype/U2CoreAttributes.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Feature.h | 2 +-
src/corelibs/U2Core/src/datatype/U2FeatureKeys.h | 2 +-
src/corelibs/U2Core/src/datatype/U2FeatureType.cpp | 2 +-
src/corelibs/U2Core/src/datatype/U2FeatureType.h | 2 +-
src/corelibs/U2Core/src/datatype/U2IdTypes.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Identity.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Location.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Mod.cpp | 2 +-
src/corelibs/U2Core/src/datatype/U2Mod.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Msa.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Qualifier.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Range.h | 2 +-
src/corelibs/U2Core/src/datatype/U2RawData.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Region.cpp | 2 +-
src/corelibs/U2Core/src/datatype/U2Region.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Sequence.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Type.cpp | 2 +-
src/corelibs/U2Core/src/datatype/U2Type.h | 2 +-
src/corelibs/U2Core/src/datatype/U2TypeIds.h | 2 +-
src/corelibs/U2Core/src/datatype/U2Variant.h | 2 +-
src/corelibs/U2Core/src/datatype/UdrRecord.cpp | 2 +-
src/corelibs/U2Core/src/datatype/UdrRecord.h | 2 +-
src/corelibs/U2Core/src/datatype/UdrSchema.cpp | 2 +-
src/corelibs/U2Core/src/datatype/UdrSchema.h | 2 +-
.../U2Core/src/datatype/UdrSchemaRegistry.cpp | 2 +-
.../U2Core/src/datatype/UdrSchemaRegistry.h | 2 +-
src/corelibs/U2Core/src/datatype/Vector3D.cpp | 2 +-
src/corelibs/U2Core/src/datatype/Vector3D.h | 2 +-
.../U2Core/src/datatype/udr/RawDataUdrSchema.cpp | 2 +-
.../U2Core/src/datatype/udr/RawDataUdrSchema.h | 2 +-
src/corelibs/U2Core/src/dbi/DbiConnection.cpp | 2 +-
src/corelibs/U2Core/src/dbi/DbiConnection.h | 2 +-
src/corelibs/U2Core/src/dbi/DbiDocumentFormat.cpp | 2 +-
src/corelibs/U2Core/src/dbi/DbiDocumentFormat.h | 2 +-
src/corelibs/U2Core/src/dbi/U2AbstractDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2AssemblyDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2AttributeDbi.h | 2 +-
.../U2Core/src/dbi/U2CrossDatabaseReferenceDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2Dbi.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2Dbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiPackUtils.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiPackUtils.h | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiRegistry.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiRegistry.h | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiUtils.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2DbiUtils.h | 2 +-
src/corelibs/U2Core/src/dbi/U2FeatureDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2FormatCheckResult.h | 2 +-
src/corelibs/U2Core/src/dbi/U2ModDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2MsaDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2ObjectDbi.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2ObjectDbi.h | 2 +-
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src/corelibs/U2Core/src/dbi/U2ObjectRelationsDbi.h | 2 +-
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src/corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h | 2 +-
src/corelibs/U2Core/src/dbi/U2SequenceDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/U2SqlHelpers.cpp | 2 +-
src/corelibs/U2Core/src/dbi/U2SqlHelpers.h | 2 +-
src/corelibs/U2Core/src/dbi/U2VariantDbi.h | 2 +-
src/corelibs/U2Core/src/dbi/UdrDbi.cpp | 2 +-
src/corelibs/U2Core/src/dbi/UdrDbi.h | 2 +-
src/corelibs/U2Core/src/globals/AppContext.cpp | 2 +-
src/corelibs/U2Core/src/globals/AppContext.h | 12 +-
src/corelibs/U2Core/src/globals/AppFileStorage.cpp | 2 +-
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src/corelibs/U2Core/src/globals/AppResources.cpp | 2 +-
src/corelibs/U2Core/src/globals/AppResources.h | 2 +-
src/corelibs/U2Core/src/globals/AppSettings.h | 2 +-
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src/corelibs/U2Core/src/globals/DataPathRegistry.h | 2 +-
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src/corelibs/U2Core/src/globals/FormatSettings.cpp | 2 +-
src/corelibs/U2Core/src/globals/FormatSettings.h | 2 +-
src/corelibs/U2Core/src/globals/GUrl.cpp | 2 +-
src/corelibs/U2Core/src/globals/GUrl.h | 2 +-
src/corelibs/U2Core/src/globals/Identifiable.h | 2 +-
src/corelibs/U2Core/src/globals/L10n.h | 2 +-
src/corelibs/U2Core/src/globals/Log.cpp | 2 +-
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src/corelibs/U2Core/src/globals/PasswordStorage.h | 2 +-
src/corelibs/U2Core/src/globals/PluginModel.cpp | 2 +-
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src/corelibs/U2Designer/transl/russian.ts | 163 +-
src/corelibs/U2Formats/src/ABIFormat.cpp | 2 +-
src/corelibs/U2Formats/src/ABIFormat.h | 2 +-
src/corelibs/U2Formats/src/ASNFormat.cpp | 2 +-
src/corelibs/U2Formats/src/ASNFormat.h | 2 +-
.../U2Formats/src/AbstractVariationFormat.cpp | 2 +-
.../U2Formats/src/AbstractVariationFormat.h | 2 +-
src/corelibs/U2Formats/src/BAMUtils.cpp | 2 +-
src/corelibs/U2Formats/src/BAMUtils.h | 2 +-
src/corelibs/U2Formats/src/BedFormat.cpp | 2 +-
src/corelibs/U2Formats/src/BedFormat.h | 2 +-
src/corelibs/U2Formats/src/ClustalWAlnFormat.cpp | 2 +-
src/corelibs/U2Formats/src/ClustalWAlnFormat.h | 2 +-
src/corelibs/U2Formats/src/ColumnDataParser.cpp | 2 +-
src/corelibs/U2Formats/src/ColumnDataParser.h | 2 +-
src/corelibs/U2Formats/src/DNAQualityIOUtils.cpp | 2 +-
src/corelibs/U2Formats/src/DNAQualityIOUtils.h | 2 +-
src/corelibs/U2Formats/src/Database.cpp | 2 +-
src/corelibs/U2Formats/src/Database.h | 2 +-
.../U2Formats/src/DatabaseConnectionFormat.cpp | 2 +-
.../U2Formats/src/DatabaseConnectionFormat.h | 2 +-
src/corelibs/U2Formats/src/DifferentialFormat.cpp | 2 +-
src/corelibs/U2Formats/src/DifferentialFormat.h | 2 +-
src/corelibs/U2Formats/src/DocumentFormatUtils.cpp | 2 +-
src/corelibs/U2Formats/src/DocumentFormatUtils.h | 2 +-
.../U2Formats/src/EMBLGenbankAbstractDocument.cpp | 2 +-
.../U2Formats/src/EMBLGenbankAbstractDocument.h | 2 +-
src/corelibs/U2Formats/src/EMBLPlainTextFormat.cpp | 2 +-
src/corelibs/U2Formats/src/EMBLPlainTextFormat.h | 2 +-
src/corelibs/U2Formats/src/FastaFormat.cpp | 2 +-
src/corelibs/U2Formats/src/FastaFormat.h | 2 +-
src/corelibs/U2Formats/src/FastqFormat.cpp | 2 +-
src/corelibs/U2Formats/src/FastqFormat.h | 2 +-
src/corelibs/U2Formats/src/FpkmTrackingFormat.cpp | 2 +-
src/corelibs/U2Formats/src/FpkmTrackingFormat.h | 2 +-
src/corelibs/U2Formats/src/GFFFormat.cpp | 2 +-
src/corelibs/U2Formats/src/GFFFormat.h | 2 +-
src/corelibs/U2Formats/src/GTFFormat.cpp | 2 +-
src/corelibs/U2Formats/src/GTFFormat.h | 2 +-
.../U2Formats/src/GenbankLocationParser.cpp | 2 +-
src/corelibs/U2Formats/src/GenbankLocationParser.h | 2 +-
.../U2Formats/src/GenbankPlainTextFormat.cpp | 2 +-
.../U2Formats/src/GenbankPlainTextFormat.h | 2 +-
src/corelibs/U2Formats/src/MSFFormat.cpp | 2 +-
src/corelibs/U2Formats/src/MSFFormat.h | 2 +-
src/corelibs/U2Formats/src/MegaFormat.cpp | 2 +-
src/corelibs/U2Formats/src/MegaFormat.h | 2 +-
src/corelibs/U2Formats/src/NEXUSFormat.cpp | 2 +-
src/corelibs/U2Formats/src/NEXUSFormat.h | 2 +-
src/corelibs/U2Formats/src/NEXUSParser.h | 2 +-
src/corelibs/U2Formats/src/NewickFormat.cpp | 2 +-
src/corelibs/U2Formats/src/NewickFormat.h | 2 +-
src/corelibs/U2Formats/src/PDBFormat.cpp | 2 +-
src/corelibs/U2Formats/src/PDBFormat.h | 2 +-
src/corelibs/U2Formats/src/PDWFormat.cpp | 2 +-
src/corelibs/U2Formats/src/PDWFormat.h | 2 +-
src/corelibs/U2Formats/src/PhylipFormat.cpp | 2 +-
src/corelibs/U2Formats/src/PhylipFormat.h | 2 +-
src/corelibs/U2Formats/src/PlainTextFormat.cpp | 2 +-
src/corelibs/U2Formats/src/PlainTextFormat.h | 2 +-
.../U2Formats/src/RawDNASequenceFormat.cpp | 58 +-
src/corelibs/U2Formats/src/RawDNASequenceFormat.h | 2 +-
src/corelibs/U2Formats/src/SAMFormat.cpp | 2 +-
src/corelibs/U2Formats/src/SAMFormat.h | 2 +-
src/corelibs/U2Formats/src/SCFFormat.cpp | 2 +-
src/corelibs/U2Formats/src/SCFFormat.h | 2 +-
src/corelibs/U2Formats/src/SNPDatabaseUtils.cpp | 2 +-
src/corelibs/U2Formats/src/SNPDatabaseUtils.h | 2 +-
.../U2Formats/src/SimpleSNPVariationFormat.cpp | 2 +-
.../U2Formats/src/SimpleSNPVariationFormat.h | 2 +-
.../U2Formats/src/StdResidueDictionary.cpp | 2 +-
src/corelibs/U2Formats/src/StdResidueDictionary.h | 2 +-
src/corelibs/U2Formats/src/StockholmFormat.cpp | 2 +-
src/corelibs/U2Formats/src/StockholmFormat.h | 2 +-
.../U2Formats/src/StreamSequenceReader.cpp | 2 +-
src/corelibs/U2Formats/src/StreamSequenceReader.h | 2 +-
.../U2Formats/src/StreamSequenceWriter.cpp | 2 +-
src/corelibs/U2Formats/src/StreamSequenceWriter.h | 2 +-
.../U2Formats/src/SwissProtPlainTextFormat.cpp | 2 +-
.../U2Formats/src/SwissProtPlainTextFormat.h | 2 +-
src/corelibs/U2Formats/src/VCF4VariationFormat.cpp | 2 +-
src/corelibs/U2Formats/src/VCF4VariationFormat.h | 2 +-
.../U2Formats/src/VectorNtiSequenceFormat.cpp | 2 +-
.../U2Formats/src/VectorNtiSequenceFormat.h | 2 +-
src/corelibs/U2Formats/src/ace/AceFormat.cpp | 2 +-
src/corelibs/U2Formats/src/ace/AceFormat.h | 2 +-
src/corelibs/U2Formats/src/ace/AceImportUtils.cpp | 2 +-
src/corelibs/U2Formats/src/ace/AceImportUtils.h | 2 +-
src/corelibs/U2Formats/src/ace/AceImporter.cpp | 2 +-
src/corelibs/U2Formats/src/ace/AceImporter.h | 2 +-
.../ace/CloneAssemblyWithReferenceToDbiTask.cpp | 2 +-
.../src/ace/CloneAssemblyWithReferenceToDbiTask.h | 2 +-
.../U2Formats/src/ace/ConvertAceToSqliteTask.cpp | 2 +-
.../U2Formats/src/ace/ConvertAceToSqliteTask.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlAssemblyDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlAssemblyDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlAttributeDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlAttributeDbi.h | 2 +-
.../src/mysql_dbi/MysqlBlobInputStream.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlBlobInputStream.h | 2 +-
.../src/mysql_dbi/MysqlBlobOutputStream.cpp | 2 +-
.../src/mysql_dbi/MysqlBlobOutputStream.h | 2 +-
.../mysql_dbi/MysqlCrossDatabaseReferenceDbi.cpp | 2 +-
.../src/mysql_dbi/MysqlCrossDatabaseReferenceDbi.h | 2 +-
src/corelibs/U2Formats/src/mysql_dbi/MysqlDbi.cpp | 2 +-
src/corelibs/U2Formats/src/mysql_dbi/MysqlDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlFeatureDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlFeatureDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlModDbi.cpp | 2 +-
src/corelibs/U2Formats/src/mysql_dbi/MysqlModDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlMsaDbi.cpp | 2 +-
src/corelibs/U2Formats/src/mysql_dbi/MysqlMsaDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlObjectDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlObjectDbi.h | 2 +-
.../src/mysql_dbi/MysqlObjectRelationsDbi.cpp | 2 +-
.../src/mysql_dbi/MysqlObjectRelationsDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlSequenceDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlSequenceDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlUdrDbi.cpp | 2 +-
src/corelibs/U2Formats/src/mysql_dbi/MysqlUdrDbi.h | 2 +-
.../U2Formats/src/mysql_dbi/MysqlVariantDbi.cpp | 2 +-
.../U2Formats/src/mysql_dbi/MysqlVariantDbi.h | 2 +-
.../src/mysql_dbi/util/MysqlAssemblyAdapter.cpp | 2 +-
.../src/mysql_dbi/util/MysqlAssemblyAdapter.h | 2 +-
.../src/mysql_dbi/util/MysqlAssemblyUtils.cpp | 2 +-
.../src/mysql_dbi/util/MysqlAssemblyUtils.h | 2 +-
.../U2Formats/src/mysql_dbi/util/MysqlDbiUtils.cpp | 2 +-
.../U2Formats/src/mysql_dbi/util/MysqlDbiUtils.h | 2 +-
.../U2Formats/src/mysql_dbi/util/MysqlHelpers.cpp | 2 +-
.../U2Formats/src/mysql_dbi/util/MysqlHelpers.h | 2 +-
.../src/mysql_dbi/util/MysqlModificationAction.cpp | 2 +-
.../src/mysql_dbi/util/MysqlModificationAction.h | 2 +-
.../util/MysqlMultiTableAssemblyAdapter.cpp | 2 +-
.../util/MysqlMultiTableAssemblyAdapter.h | 2 +-
.../util/MysqlSingleTableAssemblyAdapter.cpp | 2 +-
.../util/MysqlSingleTableAssemblyAdapter.h | 2 +-
.../src/mysql_dbi/util/upgraders/MysqlUpgrader.cpp | 2 +-
.../src/mysql_dbi/util/upgraders/MysqlUpgrader.h | 2 +-
.../upgraders/MysqlUpgraderFrom_1_14_To_1_15.cpp | 2 +-
.../upgraders/MysqlUpgraderFrom_1_14_To_1_15.h | 2 +-
.../upgraders/MysqlUpgraderFrom_1_15_To_1_16.cpp | 2 +-
.../upgraders/MysqlUpgraderFrom_1_15_To_1_16.h | 2 +-
.../upgraders/MysqlUpgraderFrom_1_16_To_1_17.cpp | 2 +-
.../upgraders/MysqlUpgraderFrom_1_16_To_1_17.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteAssemblyDbi.h | 2 +-
.../src/sqlite_dbi/SQLiteAttributeDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteAttributeDbi.h | 2 +-
.../src/sqlite_dbi/SQLiteBlobInputStream.cpp | 2 +-
.../src/sqlite_dbi/SQLiteBlobInputStream.h | 2 +-
.../src/sqlite_dbi/SQLiteBlobOutputStream.cpp | 2 +-
.../src/sqlite_dbi/SQLiteBlobOutputStream.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteDbi.cpp | 2 +-
src/corelibs/U2Formats/src/sqlite_dbi/SQLiteDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.cpp | 4 +-
.../U2Formats/src/sqlite_dbi/SQLiteFeatureDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteModDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteModDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteMsaDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteMsaDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteObjectDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteObjectDbi.h | 2 +-
.../src/sqlite_dbi/SQLiteObjectRelationsDbi.cpp | 2 +-
.../src/sqlite_dbi/SQLiteObjectRelationsDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteSequenceDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteUdrDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteUdrDbi.h | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteVariantDbi.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/SQLiteVariantDbi.h | 2 +-
.../assembly/MultiTableAssemblyAdapter.cpp | 2 +-
.../assembly/MultiTableAssemblyAdapter.h | 2 +-
.../sqlite_dbi/assembly/RTreeAssemblyAdapter.cpp | 2 +-
.../src/sqlite_dbi/assembly/RTreeAssemblyAdapter.h | 2 +-
.../assembly/SingleTableAssemblyAdapter.cpp | 2 +-
.../assembly/SingleTableAssemblyAdapter.h | 2 +-
.../src/sqlite_dbi/util/SqliteUpgrader.cpp | 2 +-
.../U2Formats/src/sqlite_dbi/util/SqliteUpgrader.h | 2 +-
.../util/SqliteUpgraderFrom_0_To_1_13.cpp | 2 +-
.../sqlite_dbi/util/SqliteUpgraderFrom_0_To_1_13.h | 2 +-
src/corelibs/U2Formats/src/tasks/BgzipTask.cpp | 2 +-
src/corelibs/U2Formats/src/tasks/BgzipTask.h | 2 +-
.../src/tasks/ConvertAssemblyToSamTask.cpp | 2 +-
.../U2Formats/src/tasks/ConvertAssemblyToSamTask.h | 2 +-
.../U2Formats/src/tasks/ConvertFileTask.cpp | 2 +-
src/corelibs/U2Formats/src/tasks/ConvertFileTask.h | 2 +-
src/corelibs/U2Formats/src/tasks/MergeBamTask.cpp | 2 +-
src/corelibs/U2Formats/src/tasks/MergeBamTask.h | 2 +-
.../U2Formats/src/tasks/MysqlUpgradeTask.cpp | 2 +-
.../U2Formats/src/tasks/MysqlUpgradeTask.h | 2 +-
src/corelibs/U2Formats/src/util/AssemblyAdapter.h | 2 +-
.../U2Formats/src/util/AssemblyPackAlgorithm.cpp | 2 +-
.../U2Formats/src/util/AssemblyPackAlgorithm.h | 2 +-
src/corelibs/U2Formats/transl/english.ts | 424 ++--
src/corelibs/U2Formats/transl/russian.ts | 428 ++--
src/corelibs/U2Gui/U2Gui.pro | 2 +
src/corelibs/U2Gui/U2Gui.qrc | 1 +
src/corelibs/U2Gui/src/AppSettingsGUI.h | 2 +-
src/corelibs/U2Gui/src/MainWindow.cpp | 2 +-
src/corelibs/U2Gui/src/MainWindow.h | 3 +-
src/corelibs/U2Gui/src/Notification.cpp | 2 +-
src/corelibs/U2Gui/src/Notification.h | 2 +-
src/corelibs/U2Gui/src/NotificationWidget.cpp | 2 +-
src/corelibs/U2Gui/src/NotificationWidget.h | 2 +-
src/corelibs/U2Gui/src/NotificationsTypes.h | 2 +-
src/corelibs/U2Gui/src/ObjectViewModel.cpp | 2 +-
src/corelibs/U2Gui/src/ObjectViewModel.h | 2 +-
src/corelibs/U2Gui/src/ObjectViewTasks.cpp | 2 +-
src/corelibs/U2Gui/src/ObjectViewTasks.h | 2 +-
src/corelibs/U2Gui/src/OpenViewTask.cpp | 2 +-
src/corelibs/U2Gui/src/OpenViewTask.h | 2 +-
src/corelibs/U2Gui/src/PasteController.cpp | 226 ++
src/corelibs/U2Gui/src/PasteController.h | 85 +
src/corelibs/U2Gui/src/PluginViewer.h | 2 +-
src/corelibs/U2Gui/src/ProjectParsing.cpp | 2 +-
src/corelibs/U2Gui/src/ProjectParsing.h | 2 +-
src/corelibs/U2Gui/src/ProjectView.h | 2 +-
src/corelibs/U2Gui/src/ToolsMenu.cpp | 2 +-
src/corelibs/U2Gui/src/ToolsMenu.h | 2 +-
src/corelibs/U2Gui/src/U2SavableWidget.cpp | 2 +-
src/corelibs/U2Gui/src/U2SavableWidget.h | 2 +-
src/corelibs/U2Gui/src/U2WidgetStateStorage.cpp | 2 +-
src/corelibs/U2Gui/src/U2WidgetStateStorage.h | 2 +-
src/corelibs/U2Gui/src/UnloadDocumentTask.cpp | 5 +-
src/corelibs/U2Gui/src/UnloadDocumentTask.h | 2 +-
src/corelibs/U2Gui/src/WelcomePageAction.cpp | 2 +-
src/corelibs/U2Gui/src/WelcomePageAction.h | 2 +-
.../src/options_panel/GroupHeaderImageWidget.cpp | 2 +-
.../src/options_panel/GroupHeaderImageWidget.h | 2 +-
.../U2Gui/src/options_panel/GroupOptionsWidget.cpp | 2 +-
.../U2Gui/src/options_panel/GroupOptionsWidget.h | 2 +-
.../U2Gui/src/options_panel/OPWidgetFactory.cpp | 2 +-
.../U2Gui/src/options_panel/OPWidgetFactory.h | 2 +-
.../src/options_panel/OPWidgetFactoryRegistry.cpp | 2 +-
.../src/options_panel/OPWidgetFactoryRegistry.h | 2 +-
.../U2Gui/src/options_panel/OptionsPanel.cpp | 2 +-
.../U2Gui/src/options_panel/OptionsPanel.h | 2 +-
.../U2Gui/src/options_panel/OptionsPanelGroup.cpp | 2 +-
.../U2Gui/src/options_panel/OptionsPanelGroup.h | 2 +-
.../U2Gui/src/options_panel/OptionsPanelWidget.cpp | 2 +-
.../U2Gui/src/options_panel/OptionsPanelWidget.h | 2 +-
.../src/options_panel/ShowHideSubgroupWidget.cpp | 2 +-
.../src/options_panel/ShowHideSubgroupWidget.h | 2 +-
.../src/util/AddNewDocumentDialogController.h | 2 +-
.../U2Gui/src/util/AddNewDocumentDialogImpl.cpp | 4 +-
.../U2Gui/src/util/AddNewDocumentDialogImpl.h | 2 +-
.../U2Gui/src/util/AuthenticationDialog.cpp | 4 +-
src/corelibs/U2Gui/src/util/AuthenticationDialog.h | 2 +-
.../U2Gui/src/util/AuthenticationWidget.cpp | 2 +-
src/corelibs/U2Gui/src/util/AuthenticationWidget.h | 2 +-
.../src/util/BreakpointConditionEditDialog.cpp | 4 +-
.../U2Gui/src/util/BreakpointConditionEditDialog.h | 2 +-
.../U2Gui/src/util/CreateAnnotationDialog.cpp | 4 +-
.../U2Gui/src/util/CreateAnnotationDialog.h | 2 +-
.../U2Gui/src/util/CreateAnnotationFullWidget.cpp | 2 +-
.../U2Gui/src/util/CreateAnnotationFullWidget.h | 2 +-
.../src/util/CreateAnnotationNormalWidget.cpp | 2 +-
.../U2Gui/src/util/CreateAnnotationNormalWidget.h | 2 +-
.../util/CreateAnnotationOptionsPanelWidget.cpp | 2 +-
.../src/util/CreateAnnotationOptionsPanelWidget.h | 2 +-
.../U2Gui/src/util/CreateAnnotationWidget.cpp | 2 +-
.../U2Gui/src/util/CreateAnnotationWidget.h | 2 +-
.../src/util/CreateAnnotationWidgetController.cpp | 2 +-
.../src/util/CreateAnnotationWidgetController.h | 2 +-
.../CreateDocumentFromTextDialogController.cpp | 6 +-
.../util/CreateDocumentFromTextDialogController.h | 2 +-
.../util/CreateObjectRelationDialogController.cpp | 2 +-
.../util/CreateObjectRelationDialogController.h | 2 +-
.../util/CreateSequenceFromTextAndOpenViewTask.cpp | 7 +-
.../util/CreateSequenceFromTextAndOpenViewTask.h | 5 +-
.../U2Gui/src/util/CredentialsAskerGui.cpp | 2 +-
src/corelibs/U2Gui/src/util/CredentialsAskerGui.h | 2 +-
src/corelibs/U2Gui/src/util/DialogUtils.cpp | 2 +-
src/corelibs/U2Gui/src/util/DialogUtils.h | 2 +-
.../src/util/DocumentFormatComboboxController.cpp | 2 +-
.../src/util/DocumentFormatComboboxController.h | 2 +-
.../U2Gui/src/util/DownloadRemoteFileDialog.cpp | 6 +-
.../U2Gui/src/util/DownloadRemoteFileDialog.h | 2 +-
.../U2Gui/src/util/EditQualifierDialog.cpp | 7 +-
src/corelibs/U2Gui/src/util/EditQualifierDialog.h | 2 +-
.../src/util/EditSequenceDialogController.cpp | 4 +-
.../U2Gui/src/util/EditSequenceDialogController.h | 2 +-
.../U2Gui/src/util/ExportAnnotations2CSVTask.cpp | 2 +-
.../U2Gui/src/util/ExportAnnotations2CSVTask.h | 2 +-
.../U2Gui/src/util/ExportAnnotationsDialog.cpp | 7 +-
.../U2Gui/src/util/ExportAnnotationsDialog.h | 2 +-
.../src/util/ExportDocumentDialogController.cpp | 6 +-
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src/corelibs/U2Gui/src/util/ExportImageDialog.cpp | 16 +-
src/corelibs/U2Gui/src/util/ExportImageDialog.h | 2 +-
src/corelibs/U2Gui/src/util/ExportObjectUtils.cpp | 2 +-
src/corelibs/U2Gui/src/util/ExportObjectUtils.h | 2 +-
.../U2Gui/src/util/GObjectComboBoxController.cpp | 2 +-
.../U2Gui/src/util/GObjectComboBoxController.h | 2 +-
src/corelibs/U2Gui/src/util/GScrollBar.cpp | 2 +-
src/corelibs/U2Gui/src/util/GScrollBar.h | 2 +-
src/corelibs/U2Gui/src/util/GUIUtils.cpp | 2 +-
src/corelibs/U2Gui/src/util/GUIUtils.h | 2 +-
.../U2Gui/src/util/GenbankLocationValidator.cpp | 2 +-
.../U2Gui/src/util/GenbankLocationValidator.h | 2 +-
src/corelibs/U2Gui/src/util/GlassView.cpp | 2 +-
src/corelibs/U2Gui/src/util/GlassView.h | 2 +-
src/corelibs/U2Gui/src/util/GraphUtils.cpp | 2 +-
src/corelibs/U2Gui/src/util/GraphUtils.h | 2 +-
src/corelibs/U2Gui/src/util/HelpButton.cpp | 2 +-
src/corelibs/U2Gui/src/util/HelpButton.h | 2 +-
.../src/util/ImportDialogs/AceImportDialog.cpp | 4 +-
.../U2Gui/src/util/ImportDialogs/AceImportDialog.h | 2 +-
.../U2Gui/src/util/ImportDialogsFactories.cpp | 2 +-
.../U2Gui/src/util/ImportDialogsFactories.h | 2 +-
.../src/util/ImportSequenceFromRawDataTask.cpp | 2 +-
.../U2Gui/src/util/ImportSequenceFromRawDataTask.h | 2 +-
.../U2Gui/src/util/InputWidgetsControllers.cpp | 2 +-
.../U2Gui/src/util/InputWidgetsControllers.h | 2 +-
.../U2Gui/src/util/LabelClickTransmitter.cpp | 2 +-
.../U2Gui/src/util/LabelClickTransmitter.h | 2 +-
src/corelibs/U2Gui/src/util/LastUsedDirHelper.cpp | 2 +-
src/corelibs/U2Gui/src/util/LastUsedDirHelper.h | 2 +-
src/corelibs/U2Gui/src/util/LocalToolbar.cpp | 2 +-
src/corelibs/U2Gui/src/util/LocalToolbar.h | 2 +-
.../U2Gui/src/util/ObjectViewTreeController.cpp | 2 +-
.../U2Gui/src/util/ObjectViewTreeController.h | 2 +-
src/corelibs/U2Gui/src/util/OrderedToolbar.cpp | 2 +-
src/corelibs/U2Gui/src/util/OrderedToolbar.h | 2 +-
src/corelibs/U2Gui/src/util/PositionSelector.cpp | 2 +-
src/corelibs/U2Gui/src/util/PositionSelector.h | 2 +-
.../src/util/ProjectDocumentComboBoxController.cpp | 2 +-
.../src/util/ProjectDocumentComboBoxController.h | 2 +-
.../src/util/ProjectTreeItemSelectorDialog.cpp | 2 +-
.../U2Gui/src/util/ProjectTreeItemSelectorDialog.h | 2 +-
.../src/util/ProjectTreeItemSelectorDialogImpl.h | 2 +-
src/corelibs/U2Gui/src/util/RangeSelector.cpp | 4 +-
src/corelibs/U2Gui/src/util/RangeSelector.h | 2 +-
src/corelibs/U2Gui/src/util/RegionSelector.cpp | 2 +-
src/corelibs/U2Gui/src/util/RegionSelector.h | 2 +-
.../RemovePartFromSequenceDialogController.cpp | 4 +-
.../util/RemovePartFromSequenceDialogController.h | 2 +-
.../U2Gui/src/util/SaveDocumentGroupController.cpp | 2 +-
.../U2Gui/src/util/SaveDocumentGroupController.h | 2 +-
src/corelibs/U2Gui/src/util/ScaleBar.cpp | 2 +-
src/corelibs/U2Gui/src/util/ScaleBar.h | 2 +-
.../U2Gui/src/util/ScriptEditorDelegate.cpp | 2 +-
src/corelibs/U2Gui/src/util/ScriptEditorDelegate.h | 2 +-
src/corelibs/U2Gui/src/util/ScriptEditorDialog.cpp | 4 +-
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.../GTTestsRegressionScenarios_5001_6000.h | 45 +
src/plugins/annotator/src/AnnotatorPlugin.cpp | 2 +-
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src/plugins/biostruct3d_view/biostruct3d_view.pri | 18 +-
src/plugins/biostruct3d_view/biostruct3d_view.pro | 88 +-
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.../biostruct3d_view/src/BioStruct3DColorScheme.h | 2 +-
.../src/BioStruct3DGLImageExportTask.cpp | 4 +-
.../src/BioStruct3DGLImageExportTask.h | 2 +-
.../biostruct3d_view/src/BioStruct3DGLRender.cpp | 2 +-
.../biostruct3d_view/src/BioStruct3DGLRender.h | 2 +-
.../biostruct3d_view/src/BioStruct3DGLWidget.cpp | 104 +-
.../biostruct3d_view/src/BioStruct3DGLWidget.h | 36 +-
.../biostruct3d_view/src/BioStruct3DSplitter.cpp | 2 +-
.../biostruct3d_view/src/BioStruct3DSplitter.h | 2 +-
.../src/BioStruct3DSubsetEditor.cpp | 2 +-
.../biostruct3d_view/src/BioStruct3DSubsetEditor.h | 2 +-
.../biostruct3d_view/src/BioStruct3DViewPlugin.cpp | 2 +-
.../biostruct3d_view/src/BioStruct3DViewPlugin.h | 2 +-
.../biostruct3d_view/src/GLFrameManager.cpp | 31 +-
src/plugins/biostruct3d_view/src/GLFrameManager.h | 21 +-
src/plugins/biostruct3d_view/src/GraphicUtils.cpp | 222 +-
src/plugins/biostruct3d_view/src/GraphicUtils.h | 9 +-
.../src/MolecularSurfaceRenderer.cpp | 39 +-
.../src/MolecularSurfaceRenderer.h | 2 +-
.../biostruct3d_view/src/SelectModelsDialog.cpp | 4 +-
.../biostruct3d_view/src/SelectModelsDialog.h | 2 +-
.../biostruct3d_view/src/SettingsDialog.cpp | 4 +-
src/plugins/biostruct3d_view/src/SettingsDialog.h | 2 +-
.../src/StructuralAlignmentDialog.cpp | 4 +-
.../src/StructuralAlignmentDialog.h | 2 +-
.../biostruct3d_view/src/TubeGLRenderer.cpp | 10 +-
src/plugins/biostruct3d_view/src/TubeGLRenderer.h | 2 +-
.../biostruct3d_view/src/VanDerWaalsGLRenderer.cpp | 12 +-
.../biostruct3d_view/src/VanDerWaalsGLRenderer.h | 10 +-
.../biostruct3d_view/src/WormsGLRenderer.cpp | 12 +-
src/plugins/biostruct3d_view/src/WormsGLRenderer.h | 2 +-
.../src/deprecated/AnaglyphRenderer.cpp | 256 +++
.../src/deprecated/AnaglyphRenderer.h | 112 +
.../src/deprecated/BallAndStickGLRenderer.cpp | 193 ++
.../src/deprecated/BallAndStickGLRenderer.h | 59 +
.../src/deprecated/BioStruct3DColorScheme.cpp | 313 +++
.../src/deprecated/BioStruct3DColorScheme.h | 176 ++
.../deprecated/BioStruct3DGLImageExportTask.cpp | 76 +
.../src/deprecated/BioStruct3DGLImageExportTask.h | 90 +
.../src/deprecated/BioStruct3DGLRender.cpp | 102 +
.../src/deprecated/BioStruct3DGLRender.h | 182 ++
.../src/deprecated/BioStruct3DGLWidget.cpp | 1120 +++++++++
.../src/deprecated/BioStruct3DGLWidget.h | 376 +++
.../src/deprecated/BioStruct3DSplitter.cpp | 855 +++++++
.../src/deprecated/BioStruct3DSplitter.h | 239 ++
.../src/deprecated/BioStruct3DSubsetEditor.cpp | 181 ++
.../src/deprecated/BioStruct3DSubsetEditor.h | 81 +
.../src/deprecated/BioStruct3DViewPlugin.cpp | 213 ++
.../src/deprecated/BioStruct3DViewPlugin.h | 77 +
.../src/deprecated/GLFrameManager.cpp | 206 ++
.../src/deprecated/GLFrameManager.h | 95 +
.../src/deprecated/GraphicUtils.cpp | 632 ++++++
.../biostruct3d_view/src/deprecated/GraphicUtils.h | 157 ++
.../src/deprecated/MolecularSurfaceRenderer.cpp | 133 ++
.../src/deprecated/MolecularSurfaceRenderer.h | 109 +
.../src/deprecated/SelectModelsDialog.cpp | 104 +
.../src/deprecated/SelectModelsDialog.h | 54 +
.../src/deprecated/SettingsDialog.cpp | 266 +++
.../src/deprecated/SettingsDialog.h | 133 ++
.../src/deprecated/StructuralAlignmentDialog.cpp | 147 ++
.../src/deprecated/StructuralAlignmentDialog.h | 57 +
.../src/deprecated/TubeGLRenderer.cpp | 131 ++
.../src/deprecated/TubeGLRenderer.h | 67 +
.../src/deprecated/VanDerWaalsGLRenderer.cpp | 83 +
.../src/deprecated/VanDerWaalsGLRenderer.h | 49 +
.../src/deprecated/WormsGLRenderer.cpp | 383 ++++
.../src/deprecated/WormsGLRenderer.h | 118 +
src/plugins/biostruct3d_view/transl/english.ts | 99 +-
src/plugins/biostruct3d_view/transl/russian.ts | 99 +-
.../browser_support/src/BrowserSupportPlugin.cpp | 2 +-
.../browser_support/src/BrowserSupportPlugin.h | 2 +-
src/plugins/chroma_view/src/ChromaViewPlugin.cpp | 2 +-
src/plugins/chroma_view/src/ChromaViewPlugin.h | 2 +-
src/plugins/chroma_view/src/ChromatogramView.cpp | 3 +-
src/plugins/chroma_view/src/ChromatogramView.h | 2 +-
src/plugins/chroma_view/transl/english.ts | 6 +-
src/plugins/chroma_view/transl/russian.ts | 6 +-
src/plugins/circular_view/src/CircularItems.cpp | 2 +-
src/plugins/circular_view/src/CircularItems.h | 2 +-
src/plugins/circular_view/src/CircularView.cpp | 9 +-
src/plugins/circular_view/src/CircularView.h | 2 +-
.../src/CircularViewImageExportTask.cpp | 2 +-
.../src/CircularViewImageExportTask.h | 2 +-
.../circular_view/src/CircularViewPlugin.cpp | 2 +-
src/plugins/circular_view/src/CircularViewPlugin.h | 2 +-
.../src/CircularViewSettingsWidget.cpp | 2 +-
.../circular_view/src/CircularViewSettingsWidget.h | 2 +-
.../src/CircularViewSettingsWidgetFactory.cpp | 4 +-
.../src/CircularViewSettingsWidgetFactory.h | 2 +-
.../circular_view/src/CircularViewSplitter.cpp | 2 +-
.../circular_view/src/CircularViewSplitter.h | 2 +-
.../circular_view/src/RestrictionMapWidget.cpp | 2 +-
.../circular_view/src/RestrictionMapWidget.h | 2 +-
.../circular_view/src/SetSequenceOriginDialog.cpp | 2 +-
.../circular_view/src/SetSequenceOriginDialog.h | 2 +-
.../circular_view/src/ShiftSequenceStartTask.cpp | 2 +-
.../circular_view/src/ShiftSequenceStartTask.h | 2 +-
src/plugins/cuda_support/src/CudaSupportPlugin.cpp | 2 +-
src/plugins/cuda_support/src/CudaSupportPlugin.h | 2 +-
.../src/CudaSupportSettingsController.cpp | 2 +-
.../src/CudaSupportSettingsController.h | 2 +-
src/plugins/dbi_bam/src/Alignment.cpp | 2 +-
src/plugins/dbi_bam/src/Alignment.h | 2 +-
src/plugins/dbi_bam/src/BAMDbiPlugin.cpp | 2 +-
src/plugins/dbi_bam/src/BAMDbiPlugin.h | 2 +-
src/plugins/dbi_bam/src/BAMFormat.cpp | 2 +-
src/plugins/dbi_bam/src/BAMFormat.h | 2 +-
src/plugins/dbi_bam/src/BaiReader.cpp | 2 +-
src/plugins/dbi_bam/src/BaiReader.h | 2 +-
src/plugins/dbi_bam/src/BaiWriter.cpp | 2 +-
src/plugins/dbi_bam/src/BaiWriter.h | 2 +-
src/plugins/dbi_bam/src/BgzfReader.cpp | 2 +-
src/plugins/dbi_bam/src/BgzfReader.h | 2 +-
src/plugins/dbi_bam/src/BgzfWriter.cpp | 2 +-
src/plugins/dbi_bam/src/BgzfWriter.h | 2 +-
src/plugins/dbi_bam/src/CancelledException.cpp | 2 +-
src/plugins/dbi_bam/src/CancelledException.h | 2 +-
src/plugins/dbi_bam/src/ConvertToSQLiteDialog.cpp | 6 +-
src/plugins/dbi_bam/src/ConvertToSQLiteDialog.h | 2 +-
src/plugins/dbi_bam/src/ConvertToSQLiteTask.cpp | 2 +-
src/plugins/dbi_bam/src/ConvertToSQLiteTask.h | 2 +-
src/plugins/dbi_bam/src/Dbi.cpp | 2 +-
src/plugins/dbi_bam/src/Dbi.h | 2 +-
src/plugins/dbi_bam/src/Exception.cpp | 2 +-
src/plugins/dbi_bam/src/Exception.h | 2 +-
src/plugins/dbi_bam/src/Header.cpp | 2 +-
src/plugins/dbi_bam/src/Header.h | 2 +-
src/plugins/dbi_bam/src/IOException.cpp | 2 +-
src/plugins/dbi_bam/src/IOException.h | 2 +-
src/plugins/dbi_bam/src/Index.cpp | 2 +-
src/plugins/dbi_bam/src/Index.h | 2 +-
src/plugins/dbi_bam/src/InvalidFormatException.cpp | 2 +-
src/plugins/dbi_bam/src/InvalidFormatException.h | 2 +-
src/plugins/dbi_bam/src/LoadBamInfoTask.cpp | 2 +-
src/plugins/dbi_bam/src/LoadBamInfoTask.h | 2 +-
src/plugins/dbi_bam/src/PrepareToImportTask.cpp | 2 +-
src/plugins/dbi_bam/src/PrepareToImportTask.h | 2 +-
src/plugins/dbi_bam/src/Reader.cpp | 2 +-
src/plugins/dbi_bam/src/Reader.h | 2 +-
src/plugins/dbi_bam/src/SamReader.cpp | 2 +-
src/plugins/dbi_bam/src/SamReader.h | 2 +-
src/plugins/dbi_bam/src/SamtoolsBasedDbi.cpp | 2 +-
src/plugins/dbi_bam/src/SamtoolsBasedDbi.h | 2 +-
src/plugins/dbi_bam/src/VirtualOffset.cpp | 2 +-
src/plugins/dbi_bam/src/VirtualOffset.h | 2 +-
.../dna_export/src/CSVColumnConfiguration.h | 2 +-
.../src/CSVColumnConfigurationDialog.cpp | 4 +-
.../dna_export/src/CSVColumnConfigurationDialog.h | 2 +-
src/plugins/dna_export/src/DNAExportPlugin.cpp | 2 +-
src/plugins/dna_export/src/DNAExportPlugin.h | 2 +-
.../dna_export/src/DNAExportPluginTests.cpp | 2 +-
src/plugins/dna_export/src/DNAExportPluginTests.h | 2 +-
.../dna_export/src/DNASequenceGenerator.cpp | 2 +-
src/plugins/dna_export/src/DNASequenceGenerator.h | 2 +-
.../dna_export/src/DNASequenceGeneratorDialog.cpp | 6 +-
.../dna_export/src/DNASequenceGeneratorDialog.h | 2 +-
.../dna_export/src/ExportAlignmentViewItems.cpp | 2 +-
.../dna_export/src/ExportAlignmentViewItems.h | 2 +-
.../dna_export/src/ExportBlastResultDialog.cpp | 4 +-
.../dna_export/src/ExportBlastResultDialog.h | 2 +-
.../dna_export/src/ExportChromatogramDialog.cpp | 4 +-
.../dna_export/src/ExportChromatogramDialog.h | 2 +-
src/plugins/dna_export/src/ExportMSA2MSADialog.cpp | 4 +-
src/plugins/dna_export/src/ExportMSA2MSADialog.h | 2 +-
.../dna_export/src/ExportMSA2SequencesDialog.cpp | 4 +-
.../dna_export/src/ExportMSA2SequencesDialog.h | 2 +-
.../dna_export/src/ExportProjectViewItems.cpp | 2 +-
.../dna_export/src/ExportProjectViewItems.h | 2 +-
.../dna_export/src/ExportQualityScoresTask.cpp | 2 +-
.../dna_export/src/ExportQualityScoresTask.h | 2 +-
.../dna_export/src/ExportQualityScoresWorker.cpp | 2 +-
.../dna_export/src/ExportQualityScoresWorker.h | 2 +-
.../src/ExportSelectedSeqRegionsTask.cpp | 2 +-
.../dna_export/src/ExportSelectedSeqRegionsTask.h | 2 +-
src/plugins/dna_export/src/ExportSequenceTask.cpp | 22 +-
src/plugins/dna_export/src/ExportSequenceTask.h | 3 +-
.../dna_export/src/ExportSequenceViewItems.cpp | 2 +-
.../dna_export/src/ExportSequenceViewItems.h | 2 +-
.../dna_export/src/ExportSequences2MSADialog.cpp | 4 +-
.../dna_export/src/ExportSequences2MSADialog.h | 2 +-
.../dna_export/src/ExportSequencesDialog.cpp | 4 +-
src/plugins/dna_export/src/ExportSequencesDialog.h | 2 +-
src/plugins/dna_export/src/ExportTasks.cpp | 2 +-
src/plugins/dna_export/src/ExportTasks.h | 2 +-
src/plugins/dna_export/src/ExportUtils.cpp | 2 +-
src/plugins/dna_export/src/ExportUtils.h | 2 +-
src/plugins/dna_export/src/GenerateDNAWorker.cpp | 2 +-
src/plugins/dna_export/src/GenerateDNAWorker.h | 2 +-
.../dna_export/src/GetSequenceByIdDialog.cpp | 4 +-
src/plugins/dna_export/src/GetSequenceByIdDialog.h | 2 +-
.../src/ImportAnnotationsFromCSVDialog.cpp | 4 +-
.../src/ImportAnnotationsFromCSVDialog.h | 2 +-
.../src/ImportAnnotationsFromCSVTask.cpp | 2 +-
.../dna_export/src/ImportAnnotationsFromCSVTask.h | 2 +-
.../dna_export/src/ImportQualityScoresTask.cpp | 2 +-
.../dna_export/src/ImportQualityScoresTask.h | 2 +-
.../dna_export/src/ImportQualityScoresWorker.cpp | 2 +-
.../dna_export/src/ImportQualityScoresWorker.h | 2 +-
src/plugins/dna_export/transl/english.ts | 9 +-
src/plugins/dna_export/transl/russian.ts | 11 +-
src/plugins/dna_flexibility/src/DNAFlexDialog.cpp | 4 +-
src/plugins/dna_flexibility/src/DNAFlexDialog.h | 2 +-
src/plugins/dna_flexibility/src/DNAFlexGraph.cpp | 2 +-
src/plugins/dna_flexibility/src/DNAFlexGraph.h | 2 +-
.../dna_flexibility/src/DNAFlexGraphAlgorithm.cpp | 2 +-
.../dna_flexibility/src/DNAFlexGraphAlgorithm.h | 2 +-
src/plugins/dna_flexibility/src/DNAFlexPlugin.cpp | 2 +-
src/plugins/dna_flexibility/src/DNAFlexPlugin.h | 2 +-
src/plugins/dna_flexibility/src/DNAFlexTask.cpp | 2 +-
src/plugins/dna_flexibility/src/DNAFlexTask.h | 2 +-
.../dna_flexibility/src/FindHighFlexRegions.cpp | 2 +-
.../dna_flexibility/src/FindHighFlexRegions.h | 2 +-
.../src/FindHighFlexRegionsAlgorithm.cpp | 2 +-
.../src/FindHighFlexRegionsAlgorithm.h | 2 +-
src/plugins/dna_flexibility/src/HighFlexResult.h | 2 +-
.../dna_flexibility/src/HighFlexSettings.cpp | 2 +-
src/plugins/dna_flexibility/src/HighFlexSettings.h | 2 +-
src/plugins/dna_flexibility/transl/russian.ts | 14 +-
src/plugins/dna_graphpack/src/BaseContentGraph.cpp | 2 +-
src/plugins/dna_graphpack/src/BaseContentGraph.h | 2 +-
src/plugins/dna_graphpack/src/CumulativeSkew.cpp | 2 +-
src/plugins/dna_graphpack/src/CumulativeSkew.h | 2 +-
.../dna_graphpack/src/DNAGraphPackPlugin.cpp | 2 +-
src/plugins/dna_graphpack/src/DNAGraphPackPlugin.h | 2 +-
src/plugins/dna_graphpack/src/DeviationGraph.cpp | 2 +-
src/plugins/dna_graphpack/src/DeviationGraph.h | 2 +-
src/plugins/dna_graphpack/src/EntropyAlgorithm.cpp | 2 +-
src/plugins/dna_graphpack/src/EntropyAlgorithm.h | 2 +-
src/plugins/dna_graphpack/src/GCFramePlot.cpp | 2 +-
src/plugins/dna_graphpack/src/GCFramePlot.h | 2 +-
.../src/KarlinSignatureDifferenceGraph.cpp | 2 +-
.../src/KarlinSignatureDifferenceGraph.h | 2 +-
.../dna_stat/src/DNAStatMSAProfileDialog.cpp | 4 +-
src/plugins/dna_stat/src/DNAStatMSAProfileDialog.h | 2 +-
src/plugins/dna_stat/src/DNAStatPlugin.cpp | 2 +-
src/plugins/dna_stat/src/DNAStatPlugin.h | 2 +-
src/plugins/dna_stat/src/DNAStatProfileTask.cpp | 2 +-
src/plugins/dna_stat/src/DNAStatProfileTask.h | 2 +-
src/plugins/dna_stat/src/DNAStatsWindow.cpp | 2 +-
src/plugins/dna_stat/src/DNAStatsWindow.h | 2 +-
.../src/DistanceMatrixMSAProfileDialog.cpp | 4 +-
.../dna_stat/src/DistanceMatrixMSAProfileDialog.h | 2 +-
src/plugins/dna_stat/transl/english.ts | 7 +-
src/plugins/dna_stat/transl/russian.ts | 11 +-
src/plugins/dotplot/src/DotPlotClasses.cpp | 2 +-
src/plugins/dotplot/src/DotPlotClasses.h | 2 +-
src/plugins/dotplot/src/DotPlotDialog.cpp | 4 +-
src/plugins/dotplot/src/DotPlotDialog.h | 2 +-
src/plugins/dotplot/src/DotPlotFilesDialog.cpp | 4 +-
src/plugins/dotplot/src/DotPlotFilesDialog.h | 2 +-
src/plugins/dotplot/src/DotPlotFilterDialog.cpp | 4 +-
src/plugins/dotplot/src/DotPlotFilterDialog.h | 2 +-
src/plugins/dotplot/src/DotPlotImageExportTask.cpp | 2 +-
src/plugins/dotplot/src/DotPlotImageExportTask.h | 2 +-
src/plugins/dotplot/src/DotPlotPlugin.cpp | 2 +-
src/plugins/dotplot/src/DotPlotPlugin.h | 2 +-
src/plugins/dotplot/src/DotPlotSplitter.cpp | 2 +-
src/plugins/dotplot/src/DotPlotSplitter.h | 2 +-
src/plugins/dotplot/src/DotPlotTasks.cpp | 2 +-
src/plugins/dotplot/src/DotPlotTasks.h | 2 +-
src/plugins/dotplot/src/DotPlotWidget.cpp | 2 +-
src/plugins/dotplot/src/DotPlotWidget.h | 2 +-
src/plugins/dotplot/transl/russian.ts | 2 +-
src/plugins/enzymes/src/CloningUtilTasks.cpp | 2 +-
src/plugins/enzymes/src/CloningUtilTasks.h | 2 +-
.../enzymes/src/ConstructMoleculeDialog.cpp | 4 +-
src/plugins/enzymes/src/ConstructMoleculeDialog.h | 2 +-
src/plugins/enzymes/src/CreateFragmentDialog.cpp | 6 +-
src/plugins/enzymes/src/CreateFragmentDialog.h | 2 +-
src/plugins/enzymes/src/DNAFragment.cpp | 2 +-
src/plugins/enzymes/src/DNAFragment.h | 2 +-
src/plugins/enzymes/src/DigestSequenceDialog.cpp | 4 +-
src/plugins/enzymes/src/DigestSequenceDialog.h | 2 +-
src/plugins/enzymes/src/EditFragmentDialog.cpp | 4 +-
src/plugins/enzymes/src/EditFragmentDialog.h | 2 +-
src/plugins/enzymes/src/EnzymesIO.cpp | 2 +-
src/plugins/enzymes/src/EnzymesIO.h | 2 +-
src/plugins/enzymes/src/EnzymesPlugin.cpp | 2 +-
src/plugins/enzymes/src/EnzymesPlugin.h | 2 +-
src/plugins/enzymes/src/EnzymesQuery.cpp | 4 +-
src/plugins/enzymes/src/EnzymesQuery.h | 2 +-
src/plugins/enzymes/src/EnzymesTests.cpp | 2 +-
src/plugins/enzymes/src/EnzymesTests.h | 2 +-
src/plugins/enzymes/src/FindEnzymesAlgorithm.h | 2 +-
src/plugins/enzymes/src/FindEnzymesDialog.cpp | 4 +-
src/plugins/enzymes/src/FindEnzymesDialog.h | 2 +-
src/plugins/enzymes/src/FindEnzymesTask.cpp | 2 +-
src/plugins/enzymes/src/FindEnzymesTask.h | 2 +-
src/plugins/enzymes/transl/english.ts | 18 +-
src/plugins/enzymes/transl/russian.ts | 18 +-
.../src/ExpertDiscoveryAdvSetDialog.cpp | 4 +-
.../src/ExpertDiscoveryAdvSetDialog.h | 2 +-
.../src/ExpertDiscoveryControlDialog.cpp | 4 +-
.../src/ExpertDiscoveryControlDialog.h | 2 +-
.../src/ExpertDiscoveryControlMrkDialog.cpp | 4 +-
.../src/ExpertDiscoveryControlMrkDialog.h | 2 +-
.../expert_discovery/src/ExpertDiscoveryData.cpp | 2 +-
.../expert_discovery/src/ExpertDiscoveryData.h | 2 +-
.../src/ExpertDiscoveryExtSigWiz.cpp | 2 +-
.../src/ExpertDiscoveryExtSigWiz.h | 2 +-
.../expert_discovery/src/ExpertDiscoveryGraphs.cpp | 2 +-
.../expert_discovery/src/ExpertDiscoveryGraphs.h | 2 +-
.../src/ExpertDiscoveryPosNegDialog.cpp | 4 +-
.../src/ExpertDiscoveryPosNegDialog.h | 2 +-
.../src/ExpertDiscoveryPosNegMrkDialog.cpp | 4 +-
.../src/ExpertDiscoveryPosNegMrkDialog.h | 2 +-
.../src/ExpertDiscoverySearchDialogController.cpp | 4 +-
.../src/ExpertDiscoverySearchDialogController.h | 2 +-
.../src/ExpertDiscoverySetupRecBoundDialog.cpp | 4 +-
.../src/ExpertDiscoverySetupRecBoundDialog.h | 2 +-
.../expert_discovery/src/ExpertDiscoveryTask.cpp | 2 +-
.../expert_discovery/src/ExpertDiscoveryTask.h | 2 +-
.../src/ExpertDiscoveryTreeWidgetsCtrl.cpp | 2 +-
.../src/ExpertDiscoveryTreeWidgetsCtrl.h | 2 +-
.../expert_discovery/src/ExpertDiscoveryView.cpp | 2 +-
.../expert_discovery/src/ExpertDiscoveryView.h | 2 +-
.../src/ETSProjectViewItemsContoller.cpp | 2 +-
.../src/ETSProjectViewItemsContoller.h | 2 +-
.../src/ExternalToolManager.cpp | 2 +-
.../src/ExternalToolManager.h | 2 +-
.../src/ExternalToolSupportL10N.h | 2 +-
.../src/ExternalToolSupportPlugin.cpp | 2 +-
.../src/ExternalToolSupportPlugin.h | 2 +-
.../src/ExternalToolSupportSettings.cpp | 2 +-
.../src/ExternalToolSupportSettings.h | 2 +-
.../src/ExternalToolSupportSettingsController.cpp | 4 +-
.../src/ExternalToolSupportSettingsController.h | 2 +-
.../external_tool_support/src/R/RSupport.cpp | 2 +-
src/plugins/external_tool_support/src/R/RSupport.h | 2 +-
.../external_tool_support/src/RnaSeqCommon.cpp | 2 +-
.../external_tool_support/src/RnaSeqCommon.h | 2 +-
.../external_tool_support/src/TaskLocalStorage.cpp | 2 +-
.../external_tool_support/src/TaskLocalStorage.h | 2 +-
.../src/bedtools/BedToolsWorkersLibrary.cpp | 2 +-
.../src/bedtools/BedToolsWorkersLibrary.h | 2 +-
.../src/bedtools/BedtoolsIntersectTask.cpp | 2 +-
.../src/bedtools/BedtoolsIntersectTask.h | 2 +-
.../src/bedtools/BedtoolsSupport.cpp | 2 +-
.../src/bedtools/BedtoolsSupport.h | 2 +-
.../src/bedtools/BedtoolsSupportTask.cpp | 2 +-
.../src/bedtools/BedtoolsSupportTask.h | 2 +-
.../src/bigWigTools/BedGraphToBigWigTask.cpp | 2 +-
.../src/bigWigTools/BedGraphToBigWigTask.h | 2 +-
.../src/bigWigTools/BedGraphToBigWigWorker.cpp | 2 +-
.../src/bigWigTools/BedGraphToBigWigWorker.h | 2 +-
.../src/bigWigTools/BigWigSupport.cpp | 2 +-
.../src/bigWigTools/BigWigSupport.h | 2 +-
.../src/blast/BlastAllSupport.cpp | 2 +-
.../src/blast/BlastAllSupport.h | 2 +-
.../src/blast/BlastAllSupportRunDialog.cpp | 2 +-
.../src/blast/BlastAllSupportRunDialog.h | 2 +-
.../src/blast/BlastAllSupportTask.cpp | 2 +-
.../src/blast/BlastAllSupportTask.h | 2 +-
.../src/blast/BlastAllWorker.cpp | 2 +-
.../src/blast/BlastAllWorker.h | 2 +-
.../src/blast/FormatDBSupport.cpp | 2 +-
.../src/blast/FormatDBSupport.h | 2 +-
.../src/blast/FormatDBSupportRunDialog.cpp | 4 +-
.../src/blast/FormatDBSupportRunDialog.h | 2 +-
.../src/blast/FormatDBSupportTask.cpp | 2 +-
.../src/blast/FormatDBSupportTask.h | 2 +-
.../src/blast_plus/BlastDBCmdDialog.cpp | 4 +-
.../src/blast_plus/BlastDBCmdDialog.h | 2 +-
.../src/blast_plus/BlastDBCmdSupport.cpp | 2 +-
.../src/blast_plus/BlastDBCmdSupport.h | 2 +-
.../src/blast_plus/BlastDBCmdSupportTask.cpp | 2 +-
.../src/blast_plus/BlastDBCmdSupportTask.h | 2 +-
.../src/blast_plus/BlastNPlusSupportTask.cpp | 2 +-
.../src/blast_plus/BlastNPlusSupportTask.h | 2 +-
.../src/blast_plus/BlastPPlusSupportTask.cpp | 2 +-
.../src/blast_plus/BlastPPlusSupportTask.h | 2 +-
.../src/blast_plus/BlastPlusSupport.cpp | 2 +-
.../src/blast_plus/BlastPlusSupport.h | 2 +-
.../src/blast_plus/BlastPlusSupportCommonTask.cpp | 2 +-
.../src/blast_plus/BlastPlusSupportCommonTask.h | 2 +-
.../src/blast_plus/BlastPlusSupportRunDialog.cpp | 2 +-
.../src/blast_plus/BlastPlusSupportRunDialog.h | 2 +-
.../src/blast_plus/BlastPlusWorker.cpp | 2 +-
.../src/blast_plus/BlastPlusWorker.h | 2 +-
.../src/blast_plus/BlastXPlusSupportTask.cpp | 2 +-
.../src/blast_plus/BlastXPlusSupportTask.h | 2 +-
.../src/blast_plus/RPSBlastSupportTask.cpp | 2 +-
.../src/blast_plus/RPSBlastSupportTask.h | 2 +-
.../src/blast_plus/TBlastNPlusSupportTask.cpp | 2 +-
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src/plugins/query_designer/src/QDTests.cpp | 2 +-
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src/plugins_3rdparty/hmm3/src/build/uhmm3build.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/build/uhmm3build.h | 2 +-
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.../hmm3/src/gobject/uHMMObject.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/gobject/uHMMObject.h | 2 +-
.../hmm3/src/phmmer/uHMM3PhmmerDialogImpl.cpp | 4 +-
.../hmm3/src/phmmer/uHMM3PhmmerDialogImpl.h | 2 +-
.../hmm3/src/phmmer/uhmm3PhmmerTask.cpp | 2 +-
.../hmm3/src/phmmer/uhmm3PhmmerTask.h | 2 +-
.../hmm3/src/phmmer/uhmm3phmmer.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/phmmer/uhmm3phmmer.h | 2 +-
.../hmm3/src/search/uHMM3SearchDialogImpl.cpp | 4 +-
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.../hmm3/src/search/uHMM3SearchTask.cpp | 2 +-
.../hmm3/src/search/uHMM3SearchTask.h | 2 +-
.../hmm3/src/search/uhmm3QDActor.cpp | 2 +-
.../hmm3/src/search/uhmm3QDActor.h | 2 +-
.../hmm3/src/search/uhmm3SearchResult.cpp | 2 +-
.../hmm3/src/search/uhmm3SearchResult.h | 2 +-
.../hmm3/src/search/uhmm3search.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/search/uhmm3search.h | 2 +-
.../task_local_storage/uHMMSearchTaskLocalData.cpp | 2 +-
.../task_local_storage/uHMMSearchTaskLocalData.h | 2 +-
.../uHMMSearchTaskLocalStorage.cpp | 2 +-
.../uHMMSearchTaskLocalStorage.h | 2 +-
.../hmm3/src/tests/uhmmer3BuildTests.cpp | 2 +-
.../hmm3/src/tests/uhmmer3BuildTests.h | 2 +-
.../hmm3/src/tests/uhmmer3PhmmerTests.cpp | 2 +-
.../hmm3/src/tests/uhmmer3PhmmerTests.h | 2 +-
.../hmm3/src/tests/uhmmer3SearchTests.cpp | 2 +-
.../hmm3/src/tests/uhmmer3SearchTests.h | 2 +-
.../hmm3/src/tests/uhmmer3Tests.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/tests/uhmmer3Tests.h | 2 +-
src/plugins_3rdparty/hmm3/src/uHMM3Plugin.cpp | 2 +-
src/plugins_3rdparty/hmm3/src/uHMM3Plugin.h | 2 +-
.../hmm3/src/util/uhmm3Utilities.cpp | 2 +-
.../hmm3/src/util/uhmm3Utilities.h | 2 +-
.../hmm3/src/workers/HMM3BuildWorker.cpp | 2 +-
.../hmm3/src/workers/HMM3BuildWorker.h | 2 +-
.../hmm3/src/workers/HMM3IOWorker.cpp | 2 +-
.../hmm3/src/workers/HMM3IOWorker.h | 2 +-
.../hmm3/src/workers/HMM3SearchWorker.cpp | 2 +-
.../hmm3/src/workers/HMM3SearchWorker.h | 2 +-
src/plugins_3rdparty/hmm3/transl/russian.ts | 4 +-
src/plugins_3rdparty/kalign/src/KalignAdapter.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignAdapter.h | 2 +-
src/plugins_3rdparty/kalign/src/KalignConstants.h | 2 +-
.../kalign/src/KalignDialogController.cpp | 6 +-
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.../kalign/src/KalignException.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignException.h | 2 +-
src/plugins_3rdparty/kalign/src/KalignPlugin.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignPlugin.h | 2 +-
src/plugins_3rdparty/kalign/src/KalignTask.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignTask.h | 2 +-
src/plugins_3rdparty/kalign/src/KalignUtils.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignUtils.h | 2 +-
src/plugins_3rdparty/kalign/src/KalignWorker.cpp | 2 +-
src/plugins_3rdparty/kalign/src/KalignWorker.h | 2 +-
...airwiseAlignmentHirschbergGUIExtensionFactory.h | 2 +-
.../kalign/src/PairwiseAlignmentHirschbergTask.h | 2 +-
.../src/PairwiseAlignmentHirschbergTaskFactory.h | 2 +-
.../kalign/src/TaskLocalStorage.cpp | 2 +-
src/plugins_3rdparty/kalign/src/TaskLocalStorage.h | 2 +-
.../kalign/src/kalign_tests/KalignTests.cpp | 2 +-
.../kalign/src/kalign_tests/KalignTests.h | 2 +-
src/plugins_3rdparty/kalign/transl/russian.ts | 20 +-
src/plugins_3rdparty/phylip/src/DistanceMatrix.cpp | 2 +-
src/plugins_3rdparty/phylip/src/DistanceMatrix.h | 2 +-
.../phylip/src/NeighborJoinAdapter.cpp | 2 +-
.../phylip/src/NeighborJoinAdapter.h | 2 +-
.../phylip/src/NeighborJoinWidget.cpp | 56 +-
.../phylip/src/NeighborJoinWidget.h | 2 +-
src/plugins_3rdparty/phylip/src/PhylipPlugin.cpp | 2 +-
src/plugins_3rdparty/phylip/src/PhylipPlugin.h | 2 +-
.../phylip/src/PhylipPluginTests.cpp | 2 +-
.../phylip/src/PhylipPluginTests.h | 2 +-
src/plugins_3rdparty/phylip/src/SeqBootAdapter.cpp | 2 +-
src/plugins_3rdparty/phylip/src/SeqBootAdapter.h | 2 +-
.../primer3/src/FindExonRegionsTask.cpp | 2 +-
.../primer3/src/FindExonRegionsTask.h | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Dialog.cpp | 4 +-
src/plugins_3rdparty/primer3/src/Primer3Dialog.h | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Plugin.cpp | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Plugin.h | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Query.cpp | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Query.h | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Task.cpp | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Task.h | 2 +-
.../primer3/src/Primer3TaskSettings.cpp | 2 +-
.../primer3/src/Primer3TaskSettings.h | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Tests.cpp | 2 +-
src/plugins_3rdparty/primer3/src/Primer3Tests.h | 2 +-
.../psipred/src/PsipredAlgTask.cpp | 2 +-
src/plugins_3rdparty/psipred/src/PsipredAlgTask.h | 2 +-
src/plugins_3rdparty/psipred/src/PsipredPlugin.cpp | 2 +-
src/plugins_3rdparty/psipred/src/PsipredPlugin.h | 2 +-
src/plugins_3rdparty/ptools/src/PToolsAligner.cpp | 2 +-
src/plugins_3rdparty/ptools/src/PToolsAligner.h | 2 +-
src/plugins_3rdparty/ptools/src/PToolsPlugin.cpp | 2 +-
src/plugins_3rdparty/ptools/src/PToolsPlugin.h | 2 +-
src/plugins_3rdparty/ptools/src/PToolsTests.cpp | 2 +-
src/plugins_3rdparty/ptools/src/PToolsTests.h | 2 +-
.../sitecon/src/DIPropertiesSitecon.cpp | 2 +-
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.../sitecon/src/DIPropertiesTests.cpp | 2 +-
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.../sitecon/src/SiteconAlgorithm.cpp | 2 +-
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.../sitecon/src/SiteconAlgorithmTests.cpp | 2 +-
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.../sitecon/src/SiteconBuildDialogController.cpp | 4 +-
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.../sitecon/src/SiteconBuildWorker.cpp | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconIO.cpp | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconIO.h | 2 +-
.../sitecon/src/SiteconIOWorkers.cpp | 2 +-
.../sitecon/src/SiteconIOWorkers.h | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconPlugin.cpp | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconPlugin.h | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconQuery.cpp | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconQuery.h | 2 +-
.../sitecon/src/SiteconSearchDialogController.cpp | 4 +-
.../sitecon/src/SiteconSearchDialogController.h | 2 +-
.../sitecon/src/SiteconSearchTask.cpp | 2 +-
.../sitecon/src/SiteconSearchTask.h | 2 +-
.../sitecon/src/SiteconSearchWorker.cpp | 2 +-
src/plugins_3rdparty/sitecon/src/SiteconWorkers.h | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleAdapter.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleAdapter.h | 2 +-
.../umuscle/src/MuscleAlignDialogController.cpp | 6 +-
.../umuscle/src/MuscleAlignDialogController.h | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleConstants.h | 2 +-
.../umuscle/src/MuscleParallel.cpp | 37 +-
src/plugins_3rdparty/umuscle/src/MuscleParallel.h | 2 +-
src/plugins_3rdparty/umuscle/src/MusclePlugin.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/MusclePlugin.h | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleTask.cpp | 5 +-
src/plugins_3rdparty/umuscle/src/MuscleTask.h | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleUtils.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleUtils.h | 2 +-
.../umuscle/src/MuscleWorkPool.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleWorkPool.h | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleWorker.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/MuscleWorker.h | 2 +-
.../umuscle/src/ProfileToProfileWorker.cpp | 2 +-
.../umuscle/src/ProfileToProfileWorker.h | 2 +-
.../umuscle/src/TaskLocalStorage.cpp | 2 +-
.../umuscle/src/TaskLocalStorage.h | 2 +-
src/plugins_3rdparty/umuscle/src/refinehorizP.cpp | 2 +-
src/plugins_3rdparty/umuscle/src/refinevertP.cpp | 2 +-
.../umuscle/src/umuscle_tests/umuscleTests.cpp | 2 +-
.../umuscle/src/umuscle_tests/umuscleTests.h | 2 +-
src/plugins_3rdparty/umuscle/transl/english.ts | 70 +-
src/plugins_3rdparty/umuscle/transl/russian.ts | 70 +-
.../variants/src/AssemblySamtoolsMpileup.cpp | 2 +-
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src/plugins_3rdparty/variants/src/SamtoolsPlugin.h | 2 +-
src/plugins_3rdparty/variants/transl/english.ts | 12 +-
src/plugins_3rdparty/variants/transl/russian.ts | 166 +-
src/plugins_checker/src/Main.cpp | 2 +-
src/ugene_globals.pri | 4 +
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src/ugenecl/src/DumpHelpTask.cpp | 2 +-
src/ugenecl/src/DumpHelpTask.h | 2 +-
src/ugenecl/src/DumpLicenseTask.cpp | 2 +-
src/ugenecl/src/DumpLicenseTask.h | 2 +-
src/ugenecl/src/DumpVersionTask.cpp | 2 +-
src/ugenecl/src/DumpVersionTask.h | 2 +-
src/ugenecl/src/ForeverTask.cpp | 2 +-
src/ugenecl/src/ForeverTask.h | 2 +-
src/ugenecl/src/Main.cpp | 2 +-
src/ugenecl/src/TaskStatusBar.cpp | 2 +-
src/ugenecl/src/TaskStatusBar.h | 2 +-
src/ugenecl/src/TestStarter.cpp | 2 +-
src/ugenecl/src/TestStarter.h | 2 +-
src/ugenecl/ugenecl.pri | 10 +-
src/ugenem/src/SendReportDialog.cpp | 69 +-
src/ugenem/src/SendReportDialog.h | 7 +-
src/ugenem/src/Utils.cpp | 28 +-
src/ugenem/src/Utils.h | 6 +-
src/ugenem/src/getMemorySize.c | 97 +
src/ugenem/src/main.cpp | 12 +-
src/ugenem/ugenem.pro | 3 +-
src/ugeneui/html/version_news.html | 27 +-
src/ugeneui/html/welcome_page.css | 12 +-
src/ugeneui/html/welcome_page.html | 45 +-
src/ugeneui/src/Main.cpp | 68 +-
.../app_settings/AppSettingsDialogController.cpp | 2 +-
.../src/app_settings/AppSettingsDialogController.h | 2 +-
.../src/app_settings/AppSettingsDialogTree.h | 2 +-
.../src/app_settings/AppSettingsGUIImpl.cpp | 2 +-
src/ugeneui/src/app_settings/AppSettingsGUIImpl.h | 2 +-
.../DirectoriesSettingsGUIController.cpp | 4 +-
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.../FormatSettingsGUIController.cpp | 4 +-
.../format_settings/FormatSettingsGUIController.h | 2 +-
.../logview_settings/LogSettingsGUIController.cpp | 4 +-
.../logview_settings/LogSettingsGUIController.h | 2 +-
.../NetworkSettingsGUIController.cpp | 4 +-
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.../ResourceSettingsGUIController.cpp | 4 +-
.../ResourceSettingsGUIController.h | 2 +-
.../UserApplicationsSettingsGUIController.cpp | 4 +-
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.../src/main_window/AboutDialogController.cpp | 2 +-
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src/ugeneui/src/main_window/CheckUpdatesTask.cpp | 2 +-
src/ugeneui/src/main_window/CheckUpdatesTask.h | 2 +-
src/ugeneui/src/main_window/DockManagerImpl.cpp | 2 +-
src/ugeneui/src/main_window/DockManagerImpl.h | 2 +-
src/ugeneui/src/main_window/MDIManagerImpl.cpp | 4 +-
src/ugeneui/src/main_window/MDIManagerImpl.h | 2 +-
src/ugeneui/src/main_window/MainWindowImpl.cpp | 18 +-
src/ugeneui/src/main_window/MainWindowImpl.h | 6 +-
src/ugeneui/src/main_window/MenuManager.cpp | 2 +-
src/ugeneui/src/main_window/MenuManager.h | 2 +-
src/ugeneui/src/main_window/ShutdownTask.cpp | 2 +-
src/ugeneui/src/main_window/ShutdownTask.h | 2 +-
src/ugeneui/src/main_window/SplashScreen.cpp | 6 +-
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src/ugeneui/src/main_window/ToolBarManager.cpp | 2 +-
src/ugeneui/src/main_window/ToolBarManager.h | 2 +-
.../src/plugin_viewer/PluginViewerController.cpp | 2 +-
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src/ugeneui/src/plugin_viewer/PluginViewerImpl.cpp | 2 +-
src/ugeneui/src/plugin_viewer/PluginViewerImpl.h | 2 +-
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src/ugeneui/src/project_support/ProjectImpl.cpp | 2 +-
src/ugeneui/src/project_support/ProjectImpl.h | 2 +-
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src/ugeneui/src/project_support/ProjectTasksGui.h | 2 +-
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src/ugeneui/src/project_view/ProjectViewDocTree.h | 2 +-
src/ugeneui/src/project_view/ProjectViewImpl.cpp | 238 +-
src/ugeneui/src/project_view/ProjectViewImpl.h | 13 +-
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src/ugeneui/src/shtirlitz/Shtirlitz.cpp | 7 +-
src/ugeneui/src/shtirlitz/Shtirlitz.h | 2 +-
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src/ugeneui/src/shtirlitz/ui/StatisticalReport.ui | 54 +-
src/ugeneui/src/task_view/TaskStatusBar.cpp | 2 +-
src/ugeneui/src/task_view/TaskStatusBar.h | 2 +-
src/ugeneui/src/task_view/TaskViewController.cpp | 2 +-
src/ugeneui/src/task_view/TaskViewController.h | 2 +-
src/ugeneui/src/utils/MultilingualHtmlView.cpp | 88 +
src/ugeneui/src/utils/MultilingualHtmlView.h | 49 +
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src/ugeneui/src/welcome_page/WelcomePageMdi.cpp | 5 +-
src/ugeneui/src/welcome_page/WelcomePageMdi.h | 2 +-
src/ugeneui/src/welcome_page/WelcomePageWidget.cpp | 51 +-
src/ugeneui/src/welcome_page/WelcomePageWidget.h | 9 +-
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src/ugeneui/transl/english.ts | 201 +-
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src/ugeneui/ugeneui.pri | 10 +-
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src/ugeneui/ugeneui.qrc | 1 +
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3982 files changed, 20068 insertions(+), 22581 deletions(-)
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create mode 100644 src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_5001_6000.cpp
create mode 100644 src/plugins/GUITestBase/src/tests/regression_scenarios/GTTestsRegressionScenarios_5001_6000.h
create mode 100644 src/plugins/biostruct3d_view/src/deprecated/AnaglyphRenderer.cpp
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/BallAndStickGLRenderer.cpp
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/BioStruct3DGLImageExportTask.cpp
create mode 100644 src/plugins/biostruct3d_view/src/deprecated/BioStruct3DGLImageExportTask.h
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/GraphicUtils.cpp
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/SelectModelsDialog.cpp
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/TubeGLRenderer.cpp
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create mode 100644 src/plugins/biostruct3d_view/src/deprecated/VanDerWaalsGLRenderer.cpp
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