[med-svn] [mia] 03/04: Update spellcheck patch

Gert Wollny gert-guest at moszumanska.debian.org
Wed Jul 27 22:11:44 UTC 2016


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gert-guest pushed a commit to branch master
in repository mia.

commit abd5d923377804ce19722ab968e1cc5f4fa4d726
Author: Gert Wollny <gw.fossdev at gmail.com>
Date:   Wed Jul 27 21:41:06 2016 +0000

    Update spellcheck patch
---
 debian/patches/mia_242_spellcheck.patch | 356 +++++++++++++++++++++++++++++++-
 1 file changed, 355 insertions(+), 1 deletion(-)

diff --git a/debian/patches/mia_242_spellcheck.patch b/debian/patches/mia_242_spellcheck.patch
index 9c40027..01b0a58 100644
--- a/debian/patches/mia_242_spellcheck.patch
+++ b/debian/patches/mia_242_spellcheck.patch
@@ -1,3 +1,9 @@
+commit 38106d8f9afe2956b68b9fce9e5e04b314302bde
+Author: Gert Wollny <gw.fossdev at gmail.com>
+Date:   Wed Jul 27 22:51:41 2016 +0200
+
+    correct spellings
+
 diff --git a/addons/dicom/dcm3d.cc b/addons/dicom/dcm3d.cc
 index 925831d..18dd317 100644
 --- a/addons/dicom/dcm3d.cc
@@ -29,6 +35,32 @@ index 925831d..18dd317 100644
  				 << ((*i)->has_attribute(IDInstanceNumber) ? "" : "instance") 
  				 << ((*i)->has_attribute(IDSeriesNumber) ? "" : "series")
  				 << " number\n"; 
+diff --git a/addons/dicom/dicom4mia.cc b/addons/dicom/dicom4mia.cc
+index 4316f90..ded4790 100644
+--- a/addons/dicom/dicom4mia.cc
++++ b/addons/dicom/dicom4mia.cc
+@@ -451,7 +451,7 @@ void CDicomReaderData::getAcquisitionTimeIfAvailable(CAttributedData& image)
+ 	OFTime of_time; 
+ 	success = dcm_time->getOFTime(of_time); 
+ 	if (!success.good()) {
+-		cverr() << "CDicomReader: Could not retrive OFTime string from DcmTime Element\n";
++		cverr() << "CDicomReader: Could not retrieve OFTime string from DcmTime Element\n";
+ 		return; 
+ 	}
+ 	image.set_attribute(IDAcquisitionTime, of_time.getTimeInSeconds()); 
+diff --git a/mia/2d/cost/ngf.cc b/mia/2d/cost/ngf.cc
+index a2797ea..3f6aedf 100644
+--- a/mia/2d/cost/ngf.cc
++++ b/mia/2d/cost/ngf.cc
+@@ -263,7 +263,7 @@ C2DImageCost *C2DNFGImageCostPlugin::do_create()const
+ const string C2DNFGImageCostPlugin::do_get_descr()const
+ {
+ 	return "This function evaluates the image similarity based on normalized gradient fields. "
+-		"Various evaluation kernels are availabe.";
++		"Various evaluation kernels are available.";
+ }
+ 
+ 
 diff --git a/mia/2d/filter/meanvar.cc b/mia/2d/filter/meanvar.cc
 index f2055fd..33ca2db 100644
 --- a/mia/2d/filter/meanvar.cc
@@ -74,6 +106,56 @@ index 8ae27ee..20d2008 100644
  }
  
  extern "C" EXPORT CPluginBase *get_plugin_interface()
+diff --git a/mia/2d/fullcost.cc b/mia/2d/fullcost.cc
+index fb32c91..7a4dcc1 100644
+--- a/mia/2d/fullcost.cc
++++ b/mia/2d/fullcost.cc
+@@ -37,7 +37,7 @@ TPluginHandler<C2DFullCostPlugin>::m_help =
+ 	"This class of cost functions evaluates the cost resulting from the "
+ 	"use of a certain transformation. This may include a penalty term that ensures "
+ 	"the smoothness of a transformation or the evaluation of a similarity measure "
+-	"between a transformed study data set and a refernce data set.";
++	"between a transformed study data set and a reference data set.";
+ 
+ 
+ EXPLICIT_INSTANCE_PLUGIN(C2DFullCost);
+diff --git a/mia/2d/splinetransformpenalty.cc b/mia/2d/splinetransformpenalty.cc
+index f93a50a..660be65 100644
+--- a/mia/2d/splinetransformpenalty.cc
++++ b/mia/2d/splinetransformpenalty.cc
+@@ -128,7 +128,7 @@ TPluginHandler<C2DSplineTransformPenaltyPlugin>::m_help =
+ 	"This class provides the penalty put on spline based transformations  "
+ 	"when considering image registration. This penalty term ensures "
+ 	"the smoothness of a transformation or the evaluation of a similarity measure "
+-	"between a transformed study data set and a refernce data set.";
++	"between a transformed study data set and a reference data set.";
+ 
+ 
+ EXPLICIT_INSTANCE_DERIVED_FACTORY_HANDLER(C2DSplineTransformPenalty, C2DSplineTransformPenaltyPlugin); 
+diff --git a/mia/2d/test_filter.cc b/mia/2d/test_filter.cc
+index d0964b0..09c0270 100644
+--- a/mia/2d/test_filter.cc
++++ b/mia/2d/test_filter.cc
+@@ -50,7 +50,7 @@ BOOST_AUTO_TEST_CASE(test_available_filters)
+ #ifdef HAVE_MAXFLOW
+ 	test_data.insert("maxflow"); 
+ #endif 
+-	test_availabe_plugins(handler, test_data); 
++	test_available_plugins(handler, test_data); 
+ }
+ 
+ BOOST_AUTO_TEST_CASE(test_run_filters)
+diff --git a/mia/2d/test_splinetransformpenalty.cc b/mia/2d/test_splinetransformpenalty.cc
+index b2e3abe..75f1e21 100644
+--- a/mia/2d/test_splinetransformpenalty.cc
++++ b/mia/2d/test_splinetransformpenalty.cc
+@@ -240,5 +240,5 @@ C2DSplineTransformPenalty *C2DSplinePenaltyMock::do_clone() const
+ BOOST_AUTO_TEST_CASE(test_available_plugins)
+ {
+ 	std::set<std::string> test_data = {"divcurl"}; 
+-	test_availabe_plugins(C2DSplineTransformPenaltyPluginHandler::instance(), test_data); 
++	test_available_plugins(C2DSplineTransformPenaltyPluginHandler::instance(), test_data); 
+ }
 diff --git a/mia/2d/transform/test_spline.cc b/mia/2d/transform/test_spline.cc
 index 6b8564a..a0dc8d2 100644
 --- a/mia/2d/transform/test_spline.cc
@@ -87,6 +169,19 @@ index 6b8564a..a0dc8d2 100644
  	// but only an approximation
  	float gamma = stransf.pertuberate(v);
  	C2DFVector lmg(12* scalex, 27 * scaley);
+diff --git a/mia/3d/2dimagefifofilter.cc b/mia/3d/2dimagefifofilter.cc
+index 2754a8c..4aaf719 100644
+--- a/mia/3d/2dimagefifofilter.cc
++++ b/mia/3d/2dimagefifofilter.cc
+@@ -121,7 +121,7 @@ TPluginHandler<C2DFifoFilterPlugin>::m_help =
+    "These filters work on a stack of 2D images in a 3D manner by interpreting the images of the stack "
+    "as slices of a 3D image. For spacial filters with a fixed filter width that is small compared to "
+    "the number of slices the filter is applied in a true 3D manner. "
+-   "For other filters, that would normaly require to work on the whole image domain at once, the "
++   "For other filters, that would normally require to work on the whole image domain at once, the "
+    "image filter is only applied to a subset of the images at a time which results in a quasi-3D processing " 
+   " that may require additional post-processing.";
+ 
 diff --git a/mia/3d/fifof/rgg.cc b/mia/3d/fifof/rgg.cc
 index c97eeee..fbc43d3 100644
 --- a/mia/3d/fifof/rgg.cc
@@ -119,6 +214,43 @@ index 185aeae..aec4963 100644
  	C3DBitImage *r = new C3DBitImage(m_start_mask);
  	r->set_attributes(data.begin_attributes(), data.end_attributes()); 
  	P3DImage result(r);
+diff --git a/mia/3d/splinetransformpenalty.cc b/mia/3d/splinetransformpenalty.cc
+index 4357393..f9689b6 100644
+--- a/mia/3d/splinetransformpenalty.cc
++++ b/mia/3d/splinetransformpenalty.cc
+@@ -127,7 +127,7 @@ TPluginHandler<C3DSplineTransformPenaltyPlugin>::m_help =
+ 	"This class provides the penalty put on spline based transformations  "
+ 	"when considering image registration. This penalty term ensures "
+ 	"the smoothness of a transformation or the evaluation of a similarity measure "
+-	"between a transformed study data set and a refernce data set.";
++	"between a transformed study data set and a reference data set.";
+ 
+ 
+ EXPLICIT_INSTANCE_DERIVED_FACTORY_HANDLER(C3DSplineTransformPenalty, C3DSplineTransformPenaltyPlugin); 
+diff --git a/mia/3d/test_landmarklistio.cc b/mia/3d/test_landmarklistio.cc
+index 3bba025..e54dd76 100644
+--- a/mia/3d/test_landmarklistio.cc
++++ b/mia/3d/test_landmarklistio.cc
+@@ -29,7 +29,7 @@ using namespace std;
+ BOOST_AUTO_TEST_CASE( test_available_plugins ) 
+ {
+ 	set<string> expected_plugins = {"lmx", "datapool"};
+-	test_availabe_plugins(C3DLandmarklistIOPluginHandler::instance(), expected_plugins); 
++	test_available_plugins(C3DLandmarklistIOPluginHandler::instance(), expected_plugins); 
+ }
+ 
+ BOOST_AUTO_TEST_CASE( test_load_landmarklist_lmx ) 
+diff --git a/mia/3d/test_splinetransformpenalty.cc b/mia/3d/test_splinetransformpenalty.cc
+index 6fedc79..dd790ec 100644
+--- a/mia/3d/test_splinetransformpenalty.cc
++++ b/mia/3d/test_splinetransformpenalty.cc
+@@ -262,5 +262,5 @@ C3DSplineTransformPenalty *C3DSplinePenaltyMock::do_clone() const
+ BOOST_AUTO_TEST_CASE(test_available_plugins)
+ {
+ 	std::set<std::string> test_data = {"divcurl"}; 
+-	test_availabe_plugins(C3DSplineTransformPenaltyPluginHandler::instance(), test_data); 
++	test_available_plugins(C3DSplineTransformPenaltyPluginHandler::instance(), test_data); 
+ }
 diff --git a/mia/3d/transform/spline.cc b/mia/3d/transform/spline.cc
 index 4ebcf5f..2d8541c 100644
 --- a/mia/3d/transform/spline.cc
@@ -145,6 +277,41 @@ index 67be069..f065978 100644
  	// but only an approximation
  	float gamma = stransf.pertuberate(v);
  	C3DFVector lmg(12* scalex, 27 * scaley);
+diff --git a/mia/core/attributes.hh b/mia/core/attributes.hh
+index ba71bd0..99d9a2b 100644
+--- a/mia/core/attributes.hh
++++ b/mia/core/attributes.hh
+@@ -150,7 +150,7 @@ private:
+    \ingroup basic
+     
+    Helper function to get the value of an attribute. Thr function throws a bad_cast exception,
+-   if the attribute doesn't hold a value ofthe requested type T
++   if the attribute doesn't hold a value of the requested type T
+    \tparam T target type
+    \param attr attribute to be read
+  */
+@@ -250,7 +250,7 @@ EXPORT_CORE  std::ostream& operator << (std::ostream& os, const CAttributeMap& d
+     \brief A collection of attributes 
+     
+     This is the base class for all data that uses attributes. It provides all the needed functions to store 
+-    and retrive attributes. 
++    and retrieve attributes. 
+ */
+ class EXPORT_CORE CAttributedData {
+ public:
+diff --git a/mia/core/delayedparameter.hh b/mia/core/delayedparameter.hh
+index 9a26e5d..97e71c8 100644
+--- a/mia/core/delayedparameter.hh
++++ b/mia/core/delayedparameter.hh
+@@ -91,7 +91,7 @@ const T TDelayedParameter<T>::get() const
+ {
+ 	if (!(CDatapool::instance().has_key(m_key))) {
+ 		throw create_exception<std::invalid_argument>("TDelayedParameter::get(): Key '", m_key, 
+-						    "' is not availabe in the data pool");  
++						    "' is not available in the data pool");  
+ 	}
+ 	return boost::any_cast<T>(CDatapool::instance().get(m_key)); 
+ }
 diff --git a/mia/core/fftslopeclassifier.cc b/mia/core/fftslopeclassifier.cc
 index 84a19e7..0fe7b5d 100644
 --- a/mia/core/fftslopeclassifier.cc
@@ -158,6 +325,119 @@ index 84a19e7..0fe7b5d 100644
  	   other curves, they are perfusion or baseline 
  	   - sort these two curves by the order in which the high peaks appear to identify
               which is RV (peak comes first) and which LV
+diff --git a/mia/core/handler.cxx b/mia/core/handler.cxx
+index 92c8fcf..377791b 100644
+--- a/mia/core/handler.cxx
++++ b/mia/core/handler.cxx
+@@ -314,7 +314,7 @@ T& THandlerSingleton<T>::do_instance(bool require_initialization)
+ 	
+ 	if (require_initialization) {
+ 		if (!m_is_initialized) {
+-			TRACE("Unitialized state"); 
++			TRACE("Uninitialized state"); 
+ 			CScopedLock lock_init(m_initialization_mutex);
+ 			if (!m_is_initialized) {
+ 				TRACE("Enter locked unitialized state"); 
+diff --git a/mia/core/handler.hh b/mia/core/handler.hh
+index 4788ec0..89ae04d 100644
+--- a/mia/core/handler.hh
++++ b/mia/core/handler.hh
+@@ -60,7 +60,7 @@ public:
+ 
+ 	typedef std::shared_ptr<I> PInterface; 
+ 
+-	/// a map containing the names and theavailabe plug-ins 
++	/// a map containing the names and the available plug-ins 
+ 	typedef std::map<std::string, PInterface> CPluginMap; 
+ 
+ 	/// the iterator to walk over the available plug-ins 
+diff --git a/mia/core/index.hh b/mia/core/index.hh
+index 97af55f..d3812ee 100644
+--- a/mia/core/index.hh
++++ b/mia/core/index.hh
+@@ -39,7 +39,7 @@ class EXPORT_CORE CCircularIndex {
+ public: 
+ 	/**
+ 	  Construct the buffer
+-	  \param size size ofthe buffer 
++	  \param size size of the buffer 
+ 	  \param start start index
+ 	*/
+ 	CCircularIndex(unsigned int size, unsigned int start); 
+diff --git a/mia/core/iohandler.hh b/mia/core/iohandler.hh
+index 4c3511d..bb5f20f 100644
+--- a/mia/core/iohandler.hh
++++ b/mia/core/iohandler.hh
+@@ -53,7 +53,7 @@ public:
+ 	/// the IO interface provided by this handler 
+ 	typedef typename TPluginHandler<I>::Interface Interface; 
+ 	
+-	/// an iterator over the availabe plug-ins 
++	/// an iterator over the available plug-ins 
+ 	typedef typename TPluginHandler<I>::const_iterator const_iterator; 
+ 
+ 	/// The map that maps file name suffixes to IO plug-ins 
+diff --git a/mia/core/property_flags.hh b/mia/core/property_flags.hh
+index 9e44509..cec0577 100644
+--- a/mia/core/property_flags.hh
++++ b/mia/core/property_flags.hh
+@@ -65,7 +65,7 @@ public:
+ 	bool has_all_in(const CPropertyFlagHolder& testset)const;
+ 
+ 	/**
+-	   Evalaute the set of properties that is availabe in the testset but not in this one
++	   Evalaute the set of properties that is available in the testset but not in this one
+ 	   @param testset 
+ 	   @return set of missing flags 
+ 	 */
+diff --git a/mia/core/slopeclassifier.hh b/mia/core/slopeclassifier.hh
+index 023e4cd..ccc84f4 100644
+--- a/mia/core/slopeclassifier.hh
++++ b/mia/core/slopeclassifier.hh
+@@ -91,7 +91,7 @@ public:
+ 	/// @return the time index of the LV peak image or  -1 if not identified 
+ 	int get_LV_peak() const;
+ 
+-	/// \returns the absolute difference between the length ofthe longest and second longest curve in the list
++	/// \returns the absolute difference between the length of the longest and second longest curve in the list
+ 	float get_max_slope_length_diff() const;
+ 
+ 	/// \returns the maximum value of the correlation between the curves and the rows for which it occures 
+diff --git a/mia/core/vector.hh b/mia/core/vector.hh
+index e1d79c7..26729a4 100644
+--- a/mia/core/vector.hh
++++ b/mia/core/vector.hh
+@@ -151,7 +151,7 @@ public:
+ 	reference operator[] (size_t i) {
+ 		assert(i < m_size); 
+ 		DEBUG_ASSERT_RELEASE_THROW(m_data && m_data.unique(), 
+-					   "TCArrayWrapper::operator[]: No writeable data availabe or not unique,"
++					   "TCArrayWrapper::operator[]: No writeable data available or not unique,"
+ 					   " call TCArrayWrapper::make_unique() first or enforce the use of  "
+ 					   "'TCArrayWrapper::operator[](...) const'");
+ 		return m_data.get()[i]; 
+@@ -170,7 +170,7 @@ public:
+ 	 */
+ 	iterator begin() {
+ 		DEBUG_ASSERT_RELEASE_THROW(m_data && m_data.unique(), 
+-					   "TCArrayWrapper::begin(): No writeable data availabe or not unique, "
++					   "TCArrayWrapper::begin(): No writeable data available or not unique, "
+ 					   "call TCArrayWrapper::make_unique() first or enforce the use of "
+ 					   "'TCArrayWrapper::begin() const'");
+ 		return m_data.get(); 
+diff --git a/mia/internal/pluginsettest.hh b/mia/internal/pluginsettest.hh
+index be819de..8d2e185 100644
+--- a/mia/internal/pluginsettest.hh
++++ b/mia/internal/pluginsettest.hh
+@@ -26,7 +26,7 @@
+ #include <boost/test/unit_test.hpp>
+ 
+ template <typename Hander> 
+-void test_availabe_plugins(const  Hander& handler, const  std::set<std::string>& test)
++void test_available_plugins(const  Hander& handler, const  std::set<std::string>& test)
+ {
+ 	auto data = handler.get_set(); 
+ 	BOOST_CHECK_EQUAL(data.size(), test.size()); 
 diff --git a/src/2deval-transformquantity.cc b/src/2deval-transformquantity.cc
 index b0f7c83..e00ddca 100644
 --- a/src/2deval-transformquantity.cc
@@ -184,6 +464,19 @@ index 3695512..dc141d4 100644
  	 "MRI Using Pseudo Ground Truth' , In Proc. Medical Image Computing and Computer-Assisted "
  	 "Intervention MICCAI 2009, 165-172, 2009. Note that for this nonlinear motion correction "
  	 "a preceding linear registration step is usually required."}, 
+diff --git a/src/2dmyoica-full.cc b/src/2dmyoica-full.cc
+index ed8376f..5066e22 100644
+--- a/src/2dmyoica-full.cc
++++ b/src/2dmyoica-full.cc
+@@ -493,7 +493,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt(min_breathing_frequency, "min-breathing-frequency", 'b', 
+ 			     "minimal mean frequency a mixing curve can have to be considered to stem from brething. "
+ 			     "A healthy rest breating rate is 12 per minute. A negative value disables the test. "
+-			     "A value 0.0 forces the series to be indentified as acquired with initial breath hold.")); 
++			     "A value 0.0 forces the series to be identified as acquired with initial breath hold.")); 
+ 	
+ 
+ 	if (options.parse(argc, argv) != CCmdOptionList::hr_no) 
 diff --git a/src/2dmyoica-nonrigid-parallel.cc b/src/2dmyoica-nonrigid-parallel.cc
 index 0475779..929bfe4 100644
 --- a/src/2dmyoica-nonrigid-parallel.cc
@@ -211,7 +504,7 @@ index 0c9fc55..3e79a16 100644
  							      
  		double heart_rate = 60 * n_heartbeats / aq_time; 
 diff --git a/src/2dmyoicapgt.cc b/src/2dmyoicapgt.cc
-index 40f8ede..e744886 100644
+index 40f8ede..6b7c0c7 100644
 --- a/src/2dmyoicapgt.cc
 +++ b/src/2dmyoicapgt.cc
 @@ -336,7 +336,7 @@ float get_relative_min_breathing_frequency(const C2DImageSeries& images, int ski
@@ -223,6 +516,15 @@ index 40f8ede..e744886 100644
  							      ", can't handle this");  
  							      
  		double heart_rate = 60 * n_heartbeats / aq_time; 
+@@ -470,7 +470,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt(min_breathing_frequency, "min-breathing-frequency", 'b', 
+ 			     "minimal mean frequency a mixing curve can have to be considered to stem from brething. "
+ 			     "A healthy rest breating rate is 12 per minute. A negative value disables the test. "
+-			     "A value 0.0 forces the series to be indentified as acquired with initial breath hold.")); 
++			     "A value 0.0 forces the series to be identified as acquired with initial breath hold.")); 
+ 	
+ 	
+ 	options.set_group("\nPseudo Ground Thruth estimation"); 
 diff --git a/src/2dmyopgt-nonrigid.cc b/src/2dmyopgt-nonrigid.cc
 index 212eafc..dab8d2e 100644
 --- a/src/2dmyopgt-nonrigid.cc
@@ -236,6 +538,19 @@ index 212eafc..dab8d2e 100644
  	 "MRI Using Pseudo Ground Truth' , In Proc. Medical Image Computing and Computer-Assisted "
  	 "Intervention MICCAI 2009, 165-172, 2009. Note that for this nonlinear motion correction "
  	 "a preceding linear registration step is usually required."},
+diff --git a/src/2dmyoseries-compdice.cc b/src/2dmyoseries-compdice.cc
+index 80a180b..5da3c63 100644
+--- a/src/2dmyoseries-compdice.cc
++++ b/src/2dmyoseries-compdice.cc
+@@ -89,7 +89,7 @@ int do_main( int argc, char *argv[] )
+ 		throw invalid_argument("Both series must contain the same number of frames"); 
+ 	
+ 	if (skip  >= original_frames.size())
+-		throw create_exception<invalid_argument>( "skip (", skip, ") must be smaller then number of availabe frames(", 
++		throw create_exception<invalid_argument>( "skip (", skip, ") must be smaller then number of available frames(", 
+ 						original_frames.size(), ")"); 
+ 	
+ 
 diff --git a/src/2dsegment-local-cmeans.cc b/src/2dsegment-local-cmeans.cc
 index a8a3cb4..fce6bc8 100644
 --- a/src/2dsegment-local-cmeans.cc
@@ -369,6 +684,19 @@ index e7220af..d23bcbd 100644
  				 << aq_number << "/" << is_number << "/" << slice_location
  				 << ", Ignoring this slice\n"; 
  		}else {
+diff --git a/src/3ddistance-stats.cc b/src/3ddistance-stats.cc
+index 4f14c90..467b664 100644
+--- a/src/3ddistance-stats.cc
++++ b/src/3ddistance-stats.cc
+@@ -50,7 +50,7 @@ const SProgramDescription g_description = {
+ 	 "        cat(result)\n"
+ 	 "    }\n\n"
+ 	}, 
+-	{pdi_example_descr, "Evaluate the distances for each label availabe in image.v to the "
++	{pdi_example_descr, "Evaluate the distances for each label available in image.v to the "
+          "corresponding labels in the image reference.v ans store the result "
+          "a coma separated list of values, i.e. distances.csv."}, 
+ 	{pdi_example_code, "-i image.v -r reference.v -o distances.csv" }
 diff --git a/src/3deval-transformquantity.cc b/src/3deval-transformquantity.cc
 index ff96582..911273f 100644
 --- a/src/3deval-transformquantity.cc
@@ -382,6 +710,19 @@ index ff96582..911273f 100644
  			      "for each grid point of the transformation range.", CCmdOptionFlags::input));
  	options.add(make_opt( out_filename, "out-file", 'o', 
  			      "output strains file, for a format description see above.", CCmdOptionFlags::required_output)); 
+diff --git a/src/3dlandmarks-distances.cc b/src/3dlandmarks-distances.cc
+index 2f1aed8..60d2031 100644
+--- a/src/3dlandmarks-distances.cc
++++ b/src/3dlandmarks-distances.cc
+@@ -34,7 +34,7 @@ const SProgramDescription g_description = {
+         
+         {pdi_description,
+          "Evaluate Euclidian distances between the corresponding landmarks in two landmark sets. "
+-         "The programs prints out only values for landmarks that are availabe and have location "
++         "The programs prints out only values for landmarks that are available and have location "
+          "values in both sets "}, 
+ 	
+         {pdi_example_descr,
 diff --git a/src/fluid3d/main.cc b/src/fluid3d/main.cc
 index 4cb57b2..66a18b5 100644
 --- a/src/fluid3d/main.cc
@@ -404,6 +745,19 @@ index 4cb57b2..66a18b5 100644
  	options.add(make_opt( params.factor, "epsilon", 0, "truncation condition"));
  	options.add(make_opt( params.matter_threshold, "matter", 0, "intensity above which real "
  			      "matter is assumed (experimental)"));
+diff --git a/src/multihist.cc b/src/multihist.cc
+index 1fb360e..0424f30 100644
+--- a/src/multihist.cc
++++ b/src/multihist.cc
+@@ -185,7 +185,7 @@ int do_main( int argc, char *argv[] )
+ 	options.add(make_opt( hmin, "min", 0, "minimum of histogram range"));
+ 	options.add(make_opt( hmax, "max", 0, "maximum of histogram range"));
+ 	options.add(make_opt( bins, "bins", 0, "number of histogram bins, set to zero to create a bin for "
+-			      "each intensity value availabe in the input data. In this case the histogram "
++			      "each intensity value available in the input data. In this case the histogram "
+ 			      "range is also evaluated automatically"));
+ 		
+ 	if (options.parse(argc, argv) != CCmdOptionList::hr_no)
 diff --git a/src/plugin-help.cc b/src/plugin-help.cc
 index 24768c4..3987a9a 100644
 --- a/src/plugin-help.cc

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