[med-svn] [r-bioc-limma] 02/04: Merge tag 'upstream/3.28.17+dfsg'

[Gordon Ball]

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chronitis-guest pushed a commit to branch master
in repository r-bioc-limma.

commit 836106c8f881c25266f7894d0e9e00f207a25622
Merge: 7679d3f d85c65f
Author: Gordon Ball <gordon at chronitis.net>
Date:   Thu Jul 28 14:59:03 2016 +0200

    Merge tag 'upstream/3.28.17+dfsg'
    
    Upstream version 3.28.17+dfsg

 DESCRIPTION                 |   9 ++--
 NAMESPACE                   |   2 +-
 R/alias2Symbol.R            | 110 ++++++++++++++++++--------------------------
 R/combine.R                 |   4 +-
 R/geneset-camera.R          |   2 +-
 R/geneset-fry.R             |  13 ++++--
 R/geneset-roast.R           |  13 ++++--
 R/goana.R                   |  53 ++++++++-------------
 R/kegga.R                   |   6 +--
 R/lmfit.R                   |   5 +-
 R/norm.R                    |   4 +-
 R/plots-fit.R               |  16 ++++---
 build/vignette.rds          | Bin 229 -> 230 bytes
 inst/doc/changelog.txt      |  40 ++++++++++++++++
 inst/doc/intro.pdf          | Bin 46191 -> 46191 bytes
 man/alias2Symbol.Rd         |  28 +++++++++--
 man/ebayes.Rd               |   4 +-
 man/fitfdist.Rd             |   2 +-
 man/getEAWP.Rd              |   3 ++
 man/goana.Rd                |   8 +++-
 man/ids2indices.Rd          |   6 +--
 man/removeBatchEffect.Rd    |  35 +++++++++-----
 man/squeezeVar.Rd           |   5 +-
 tests/limma-Tests.Rout.save |  16 +++----
 24 files changed, 220 insertions(+), 164 deletions(-)

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