[med-svn] [r-bioc-limma] 04/04: Refresh patches

[Gordon Ball]

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chronitis-guest pushed a commit to branch master
in repository r-bioc-limma.

commit 2006f21ef4c75032e495f976524f5652bb4a4365
Author: Gordon Ball <gordon at chronitis.net>
Date:   Thu Jul 28 15:04:42 2016 +0200

    Refresh patches
---
 debian/patches/do_not_attempt_GO.db_test.patch | 23 ++++++++++++-----------
 1 file changed, 12 insertions(+), 11 deletions(-)

diff --git a/debian/patches/do_not_attempt_GO.db_test.patch b/debian/patches/do_not_attempt_GO.db_test.patch
index 7f1803c..86214ad 100644
--- a/debian/patches/do_not_attempt_GO.db_test.patch
+++ b/debian/patches/do_not_attempt_GO.db_test.patch
@@ -16,7 +16,7 @@ Description: the test is usin GO.db which is not yet packaged
 -topGO(go,n=10,truncate.term=30,sort="down")
 --- a/tests/limma-Tests.Rout.save
 +++ b/tests/limma-Tests.Rout.save
-@@ -1317,42 +1317,6 @@
+@@ -1317,43 +1317,3 @@
  + "136371","1364","1365","136541","1366","136647","1368","136853","1369","136991",
  + "1370","137075","1371","137209","1373","137362","1374","137492","1375","1376",
  + "137682","137695","137735","1378","137814","137868","137872","137886","137902","137964")
@@ -28,8 +28,8 @@ Description: the test is usin GO.db which is not yet packaged
 -GO:0012501          programmed cell death  BP  5  4    1 0.003446627
 -GO:0055082 cellular chemical homeostas...  BP  2  0    2 1.000000000
 -GO:0006897                    endocytosis  BP  3  3    0 0.005046382
--GO:0044767 single-organism development...  BP 23  3    5 0.845083285
 -GO:0048856 anatomical structure develo...  BP 23  3    5 0.845083285
+-GO:0044767 single-organism development...  BP 23  3    5 0.845083285
 -GO:1902589 single-organism organelle o...  BP  7  1    3 0.762502428
 -GO:0008219                     cell death  BP  6  4    1 0.009129968
 -GO:0016265                          death  BP  6  4    1 0.009129968
@@ -39,8 +39,8 @@ Description: the test is usin GO.db which is not yet packaged
 -GO:0012501 0.3096959098
 -GO:0055082 0.0042424242
 -GO:0006897 1.0000000000
--GO:0044767 0.0066515474
 -GO:0048856 0.0066515474
+-GO:0044767 0.0066515474
 -GO:1902589 0.0066732856
 -GO:0008219 0.3605604217
 -GO:0016265 0.3605604217
@@ -48,14 +48,15 @@ Description: the test is usin GO.db which is not yet packaged
 -                                     Term Ont  N Up Down      P.Up       P.Down
 -GO:0032502          developmental process  BP 24  3    6 0.8685205 0.0006606503
 -GO:0055082 cellular chemical homeostas...  BP  2  0    2 1.0000000 0.0042424242
--GO:0044767 single-organism development...  BP 23  3    5 0.8450833 0.0066515474
 -GO:0048856 anatomical structure develo...  BP 23  3    5 0.8450833 0.0066515474
+-GO:0044767 single-organism development...  BP 23  3    5 0.8450833 0.0066515474
 -GO:1902589 single-organism organelle o...  BP  7  1    3 0.7625024 0.0066732856
--GO:0007283                spermatogenesis  BP  3  0    2 1.0000000 0.0122943723
--GO:0048232         male gamete generation  BP  3  0    2 1.0000000 0.0122943723
--GO:0001889              liver development  BP  3  0    2 1.0000000 0.0122943723
+-GO:0031225 anchored component of membr...  CC  3  0    2 1.0000000 0.0122943723
 -GO:0019725           cellular homeostasis  BP  3  0    2 1.0000000 0.0122943723
--GO:0035295               tube development  BP  3  0    2 1.0000000 0.0122943723
- > 
- > proc.time()
-    user  system elapsed 
+-GO:0061008 hepaticobiliary system deve...  BP  3  0    2 1.0000000 0.0122943723
+-GO:0001889              liver development  BP  3  0    2 1.0000000 0.0122943723
+-GO:0048232         male gamete generation  BP  3  0    2 1.0000000 0.0122943723
+-> 
+-> proc.time()
+-   user  system elapsed 
+-   2.77    0.23    3.04 

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