[med-svn] [fermi-lite] 02/09: naming and descriptions

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository fermi-lite.

commit 99528a64beab7415e2b2db13b8d8b427e9851212
Author: Sascha Steinbiss <satta at debian.org>
Date:   Thu Jul 28 21:54:48 2016 +0000

    naming and descriptions
---
 debian/control | 41 ++++++++++++++++++-----------------------
 1 file changed, 18 insertions(+), 23 deletions(-)

diff --git a/debian/control b/debian/control
index 06d2322..cde39f2 100644
--- a/debian/control
+++ b/debian/control
@@ -1,4 +1,4 @@
-Source:  fermi-lite
+Source: fermi-lite
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Sascha Steinbiss <satta at debian.org>
 Section: science
@@ -12,22 +12,19 @@ Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/fermi-lite.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/fermi-lite.git
 Homepage: https://github.com/lh3/fermi-lite
 
-Package: fermi-lite
+Package: fml-asm
 Architecture: any
 Depends: ${misc:Depends},
          ${shlibs:Depends},
          zlib1g
-Description: tool for approximate mapping of long biosequences such as DNA reads
- Minimap is an experimental tool to efficiently find multiple approximate
- mapping positions between two sets of long biological sequences, such as
- between DNA reads and reference genomes, between genomes and between long
- noisy reads.
- Minimap does not generate alignments as of now and because of this, it is
- usually tens of times faster than mainstream aligners.
- It does not replace mainstream aligners, but it can be useful when you
- want to quickly identify long approximate matches at moderate divergence among
- a huge collection of sequences. For this task, it is much faster than most
- existing tools.
+Description: tool for assembling Illumina short reads in small regions
+ Fml-asm is a command-line tool for assembling Illumina short reads in regions
+ from 100bp to 10 million bp in size, based on the fermi-lite library.
+ It is largely a light-weight in-memory version of fermikit without
+ generating any intermediate files. It inherits the performance, the relatively
+ small memory footprint and the features of fermikit. In particular, fermi-lite
+ is able to retain heterozygous events and thus can be used to assemble diploid
+ regions for the purpose of variant calling.
 
 Package: libfml0
 Section: libs
@@ -35,12 +32,11 @@ Architecture: any
 Depends: ${shlibs:Depends},
          ${misc:Depends},
          zlib1g
-Description: library for approximate mapping of long biosequences
- Minimap is an experimental tool to efficiently find multiple approximate
- mapping positions between two sets of long sequences, such as between DNA
- reads and reference genomes, between genomes and between long noisy reads.
+Description: library for assembling Illumina short reads in small regions
+ Fermi-lite is a standalone C library tool for assembling Illumina short
+ reads in regions from 100bp to 10 million bp in size.
  .
- This package contains a shared library offering the minimap API to custom C
+ This package contains a shared library offering the fermi-lite API to custom C
  programs.
 
 Package: libfml-dev
@@ -50,10 +46,9 @@ Depends: ${shlibs:Depends},
          ${misc:Depends},
          libfml0 (= ${binary:Version}),
          zlib1g-dev
-Description: development headers for libminimap
- Minimap is an experimental tool to efficiently find multiple approximate
- mapping positions between two sets of long sequences, such as between
- DNA reads and reference genomes, between genomes and between long noisy reads.
+Description: development headers for libfml
+ Fermi-lite is a standalone C library tool for assembling Illumina short
+ reads in regions from 100bp to 10 million bp in size.
  .
- This package contains the C library headers for using minimap in custom tools,
+ This package contains the C library headers for using libfml in custom tools,
  along with a static library.

-- 
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