[med-svn] [subread] 03/03: Merge tag 'upstream/1.5.0-p3+dfsg'

[Alex Mestiashvili]

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malex-guest pushed a commit to branch master
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commit 8320987f70ce48b8a0a473f8ae1129691001eeac
Merge: 85c493a 5c4e244
Author: Alexandre Mestiashvili <alex at biotec.tu-dresden.de>
Date:   Thu Jun 2 14:30:19 2016 +0200

    Merge tag 'upstream/1.5.0-p3+dfsg'
    
    Upstream version 1.5.0-p3+dfsg

 doc/SubreadUsersGuide.tex |   6 +-
 src/HelperFunctions.c     |  91 +++++++++++++
 src/HelperFunctions.h     |   2 +
 src/Makefile              |   1 -
 src/SNPCalling.c          |  63 ++++++---
 src/core-indel.c          |   5 +-
 src/core.c                |  57 ++++----
 src/input-files.c         | 338 ++++++++++++++++++++++++++++++++++++++++------
 src/input-files.h         |   4 +
 src/makefile.version      |   2 +-
 src/propmapped.c          |   1 +
 src/readSummary.c         |   7 +-
 src/test-fisher.c         |  84 ++++++++++++
 13 files changed, 567 insertions(+), 94 deletions(-)

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