[med-svn] r22102 - trunk/packages/dssp/trunk/debian

[Tatiana Malygina]

Author: latticetower-guest
Date: 2016-06-07 15:56:49 +0000 (Tue, 07 Jun 2016)
New Revision: 22102

Added:
   trunk/packages/dssp/trunk/debian/README.test
   trunk/packages/dssp/trunk/debian/docs
Modified:
   trunk/packages/dssp/trunk/debian/changelog
Log:
add README.test

Added: trunk/packages/dssp/trunk/debian/README.test
===================================================================
--- trunk/packages/dssp/trunk/debian/README.test	                        (rev 0)
+++ trunk/packages/dssp/trunk/debian/README.test	2016-06-07 15:56:49 UTC (rev 22102)
@@ -0,0 +1,36 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by executing
+
+    sh installation-test
+
+in order to confirm its integrity.
+
+DSSP program predicts secondary structure from atom coordinates, given in 
+"ATOM" section [1] of PDB file. Other sections can be ignored. 
+
+Test in `installation-test` checks the following:
+
+1. runs mkdssp on file with small portion of "ATOM" section records (2OSL_fragment.pdb). 
+This fragment file contains 2 chain fragments with 4 aminoacids in each - output results 
+are not very interesting.
+
+2. runs mkdssp on some typical pdb file (5bmg.pdb), taken randomly from 
+RCSB Protein Data Bank database [2]. This run provides fancier results, 
+because pdb file is taken as it is.
+
+To test manually, run `mkdssp` like this (program output will be shown in stdout):
+
+```
+mkdssp -i <some pdb file name>
+```
+
+To see other options, call `mkdssp` without parameters or with `-h` key.
+
+References:
+
+[1]: "ATOM" section description in current PDB format specification
+    http://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#ATOM
+[2]: RCSB PDB database (one of the possible sources of .pdb files)
+    http://www.rcsb.org/pdb/home/home.do

Modified: trunk/packages/dssp/trunk/debian/changelog
===================================================================
--- trunk/packages/dssp/trunk/debian/changelog	2016-06-07 15:51:54 UTC (rev 22101)
+++ trunk/packages/dssp/trunk/debian/changelog	2016-06-07 15:56:49 UTC (rev 22102)
@@ -3,6 +3,7 @@
   * Team upload.
   * cme fix dpkg-control
   * add example files
+  * add simple testsuite and README.test
 
  -- Tatiana Malygina <merlettaia at gmail.com>  Tue, 07 Jun 2016 14:58:19 +0000
 

Added: trunk/packages/dssp/trunk/debian/docs
===================================================================
--- trunk/packages/dssp/trunk/debian/docs	                        (rev 0)
+++ trunk/packages/dssp/trunk/debian/docs	2016-06-07 15:56:49 UTC (rev 22102)
@@ -0,0 +1,3 @@
+README.txt
+debian/README.test
+debian/tests/installation-test