[med-svn] [sspace] 03/08: add shebangs where necessary

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository sspace.

commit eddff7b06c651b9d3f2e43c6b74b28d4d1a08d96
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Tue Jun 7 21:32:37 2016 +0000

    add shebangs where necessary
---
 debian/patches/series         |  1 +
 debian/patches/shebangs.patch | 57 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 58 insertions(+)

diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..cde028c
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+shebangs.patch
diff --git a/debian/patches/shebangs.patch b/debian/patches/shebangs.patch
new file mode 100644
index 0000000..ba8acaa
--- /dev/null
+++ b/debian/patches/shebangs.patch
@@ -0,0 +1,57 @@
+--- a/bin/ExtendOrFormatContigs.pl
++++ b/bin/ExtendOrFormatContigs.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+   ###############################################################
+   #Marten Boetzer 1-03-2010                                    #
+   #SSPACE perl subscript ExtendOrFormatContigs.pl               #
+--- a/bin/PairingAndScaffolding.pl
++++ b/bin/PairingAndScaffolding.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+   ###################################################
+   #Marten Boetzer 14-07-2011                        #
+   #SSPACE perl subscript PairingAndScaffolding.pl   #
+--- a/bin/readLibFiles.pl
++++ b/bin/readLibFiles.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+   #############################################################
+   #Marten Boetzer 13-06-2011                                  #
+   #SSPACE perl subscript readLibFiles.pl                      #
+@@ -228,4 +229,4 @@
+   $|++;
+ }
+ 
+-#########END readLibFiles.pl
+\ No newline at end of file
++#########END readLibFiles.pl
+--- a/tools/estimate_insert_size.pl
++++ b/tools/estimate_insert_size.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ###################################################################################################################
+ #Marten Boetzer BaseClear B.v. 14-07-2011                                                                         #
+ #SSPACE perl subscript samToTab_multi.pl                                                                          #
+--- a/tools/sam_bam2tab.pl
++++ b/tools/sam_bam2tab.pl
+@@ -1,3 +1,4 @@
++#!/usr/bin/env perl
+ ########################################################################
+ #Marten Boetzer BaseClear B.v. 26-07-2011                              #
+ #SSPACE perl sam_bam2Tab.pl                                            #
+@@ -96,4 +97,4 @@
+   my $countingMessager = shift;
+   print "\r$countingMessager";
+   $|++;
+-}
+\ No newline at end of file
++}
+--- a/tools/fq_all2std.pl
++++ b/tools/fq_all2std.pl
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl -w
++#!/usr/bin/env perl -w
+ 
+ # Author: lh3
+ 

-- 
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