[med-svn] r22120 - trunk/packages/dssp/trunk/debian

[Tatiana Malygina]

Author: latticetower-guest
Date: 2016-06-09 14:33:26 +0000 (Thu, 09 Jun 2016)
New Revision: 22120

Modified:
   trunk/packages/dssp/trunk/debian/changelog
   trunk/packages/dssp/trunk/debian/copyright
Log:
add information on .pdb example files to d/copyright

Modified: trunk/packages/dssp/trunk/debian/changelog
===================================================================
--- trunk/packages/dssp/trunk/debian/changelog	2016-06-09 13:03:00 UTC (rev 22119)
+++ trunk/packages/dssp/trunk/debian/changelog	2016-06-09 14:33:26 UTC (rev 22120)
@@ -6,6 +6,7 @@
   * add simple testsuite and README.test
   * turn on hardening
   * move examples from upstream patch to d/examples
+  * add information on .pdb example files to d/copyright
 
  -- Tatiana Malygina <merlettaia at gmail.com>  Tue, 07 Jun 2016 14:58:19 +0000
 

Modified: trunk/packages/dssp/trunk/debian/copyright
===================================================================
--- trunk/packages/dssp/trunk/debian/copyright	2016-06-09 13:03:00 UTC (rev 22119)
+++ trunk/packages/dssp/trunk/debian/copyright	2016-06-09 14:33:26 UTC (rev 22120)
@@ -3,6 +3,32 @@
 Upstream-Contact: Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
 Source: http://www.cmbi.ru.nl/dssp/
 
+Files: debian/examples/5bmg.pdb
+Copyright: © 2016, Cunningham, T.F., Pornsuwan, S., Horne, W.S., Saxena, S.
+License: PDB
+Comment: full protein structure in PDB format from RCSB PDB database 
+ PDB ID: 5bmg, available at: http://www.rcsb.org
+
+Files: debian/examples/2OSL_fragment.pdb
+Copyright: © 2007, Du, J., Wang, H., Zhong, C., Peng, B., Zhang, M., Li, B., 
+ Huo, S., Guo, Y., Ding, J.
+License: PDB
+Comment: a fragment of protein structure from RCSB PDB database.
+ PDB ID: 2osl, available at: http://www.rcsb.org
+ .
+ Contains only a small portion of corresponding file (with PDB ID "2osl") - 
+ PDB file's "ATOM" section information about first 4 aminoacid atoms for each 
+ of 2 different chains (namely, 'L' and 'H' chains). 
+ .
+ Fragmented PDB sample is used for package testing purposes - it shows that 
+ algorithm needs only specific .pdb file portion (atom coordinates from "ATOM" 
+ section) for processing and obtaining some results (while with this short 
+ fragment these results can be almost meaningless because chain fragments are
+ too short).
+ .
+ Can be replaced by any other PDB file or PDB file fragment with atom 
+ coordinates.
+
 Files: debian/*
 Copyright: © 2012, Maarten L. Hekkelman <m.hekkelman at cmbi.ru.nl>
 License: Boost-1.0
@@ -35,4 +61,17 @@
  FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
  ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
  DEALINGS IN THE SOFTWARE.
-
+ 
+License: PDB
+ PDB File License - as described in RCSB PDB site - June 17, 2016
+ .
+ Data files contained in the PDB archive (ftp://ftp.wwpdb.org) are free of all 
+ copyright restrictions and made fully and freely available for both 
+ non-commercial and commercial use. Users of the data should attribute the 
+ original authors of that structural data. By using the materials available in 
+ the PDB archive, the user agrees to abide by the conditions described in the 
+ PDB Advisory Notice (http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/pdb_advisory.html).
+ .
+ License's text is available on RCSB PDB database site (http://www.rcsb.org), on page named 
+ "RCSB PDB Policies & References".
+ URL: http://www.rcsb.org/pdb/static.do?p=general_information/about_pdb/policies_references.html