[med-svn] [mothur] branch master updated (4f80ae6 -> efd9b23)

[Tomasz Buchert]

This is an automated email from the git hooks/post-receive script.

tomasz pushed a change to branch master
in repository mothur.

      from  4f80ae6   Restore changelog entry which was messed due to forgotten `git pull`
      adds  9f88981   Imported Upstream version 1.37.3
       new  159be53   Merge tag 'upstream/1.37.3'
       new  5ce5d72   Imported Upstream version 1.37.5
       new  8118804   Merge tag 'upstream/1.37.5'
       new  7c23422   d/patches: refresh
       new  efd9b23   release

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                                   |  7 +-
 ...mmand.patch => 0001-Fix-catchall-command.patch} |  2 +
 debian/patches/0002-Add-hardening-flags.patch      | 38 ++++++++++
 debian/patches/0003-Fix-VERSION-in-Makefile.patch  | 35 ++++++++++
 debian/patches/hardening.patch                     | 15 ----
 debian/patches/series                              |  5 +-
 makefile-internal                                  |  4 +-
 source/commands/chimerauchimecommand.cpp           |  2 +-
 source/commands/clustersplitcommand.cpp            | 27 ++++----
 source/commands/makecontigscommand.cpp             | 80 ++++++++++++----------
 source/commands/makecontigscommand.h               |  1 +
 source/mothurout.cpp                               |  4 +-
 source/mothurout.h                                 |  2 +-
 source/vsearchfileparser.cpp                       |  2 +-
 14 files changed, 146 insertions(+), 78 deletions(-)
 rename debian/patches/{0008-Fix-catchall-command.patch => 0001-Fix-catchall-command.patch} (91%)
 create mode 100644 debian/patches/0002-Add-hardening-flags.patch
 create mode 100644 debian/patches/0003-Fix-VERSION-in-Makefile.patch
 delete mode 100644 debian/patches/hardening.patch

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