[med-svn] [mothur] branch upstream updated (9f88981 -> 5ce5d72)

[Tomasz Buchert]

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tomasz pushed a change to branch upstream
in repository mothur.

      from  9f88981   Imported Upstream version 1.37.3
       new  5ce5d72   Imported Upstream version 1.37.5

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 makefile-internal                        |  4 +-
 source/commands/chimerauchimecommand.cpp |  2 +-
 source/commands/clustersplitcommand.cpp  | 27 ++++++-----
 source/commands/makecontigscommand.cpp   | 80 +++++++++++++++++---------------
 source/commands/makecontigscommand.h     |  1 +
 source/mothurout.cpp                     |  4 +-
 source/mothurout.h                       |  2 +-
 source/vsearchfileparser.cpp             |  2 +-
 8 files changed, 65 insertions(+), 57 deletions(-)

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