[med-svn] [spades] branch master updated (a1a1aa2 -> ca397f5)

[Sascha Steinbiss]

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sascha-guest pushed a change to branch master
in repository spades.

      from  a1a1aa2   use stable link order
       new  bc265dc   Imported Upstream version 3.8.1+dfsg
       new  d56bee1   Merge tag 'upstream/3.8.1+dfsg'
       new  ca397f5   version bump

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Summary of changes:
 VERSION                                           |   2 +-
 changelog.html                                    |   4 +
 configs/debruijn/{ => path_extend}/pe_params.info |  88 +++++++++++++--
 debian/changelog                                  |   6 +
 ext/src/cityhash/city.cc                          | 132 ----------------------
 manual.html                                       |  40 +++----
 src/cmake/pack.cmake                              |   4 +-
 src/include/config.hpp.in                         |   2 -
 src/projects/dipspades/main.cpp                   |   2 +
 src/projects/spades/chromosome_removal.cpp        |  19 +++-
 src/projects/spades/launch.hpp                    |  10 +-
 src/projects/spades/main.cpp                      |   1 +
 12 files changed, 139 insertions(+), 171 deletions(-)
 copy configs/debruijn/{ => path_extend}/pe_params.info (67%)

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