[med-svn] [bowtie2] 01/01: Added EDAM file, introduced registry entries

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a commit to branch master
in repository bowtie2.

commit b1152c5a009dbd8a3ce3043c43c81c744bb1bdfa
Author: Steffen Moeller <moeller at debian.org>
Date:   Wed Jun 22 13:23:22 2016 +0200

    Added EDAM file, introduced registry entries
---
 debian/upstream/edam     | 47 +++++++++++++++++++++++++++++++++++++++++++++++
 debian/upstream/metadata |  3 +++
 2 files changed, 50 insertions(+)

diff --git a/debian/upstream/edam b/debian/upstream/edam
new file mode 100644
index 0000000..e857ba0
--- /dev/null
+++ b/debian/upstream/edam
@@ -0,0 +1,47 @@
+topic: topic_0622 Genomics
+scope: summary
+ function: operation_3211 Genome indexing
+ function: operation_0292 Sequence alignment generation
+ input: data_2975 Nucleic acid sequence (raw)
+ input: format_1929 FASTA
+ input: format_1930 FASTQ
+ output: data_1383 Sequence alignment (nucleic acid)
+ output: format_2573 SAM
+scope: bowtie-build
+ function: operation_3212 Genome indexing (Burrows-Wheeler)
+ input: data_2975 Nucleic acid sequence (raw)
+ input: format_1929 FASTA
+ output: data_3210 Genome index
+ output: ??? Bowtie index format EBWT
+ output: ??? Bowtie long index format EBTWL
+scope: bowtie-inspect
+ function: operation_1813 Sequence retrieval
+ function: operation_0304 Metadata retrieval
+ function: operation_0228 Data index analysis
+ input: data_3210 Genome index
+ input: ??? Bowtie index format EBWT
+ input: ??? Bowtie long index format EBTWL
+ output: data_2975 Nucleic acid sequence (raw)
+ output: format_1929 FASTA
+ output: format_1964 plain text format (unformatted)
+scope: bowtie
+ function: operation_0350 Sequence database search (by sequence using word-based methods)
+ function: operation_0292 Sequence alignment generation
+ input: data_3210 Genome index
+ input: data_2975 Nucleic acid sequence (raw)
+ input: format_1964 plain text format (unformatted)
+ input: format_1929 FASTA
+ input: format_1930 FASTQ
+ output: data_1383 Sequence alignment (nucleic acid)
+ output: data_0867 Sequence alignment report
+ output: format_2573 SAM
+ output: ??? Bowtie alignment report format
+
+topic: topic_0622 Genomics
+function: operation_3212 Genome indexing (Burrows-Wheeler)
+function: operation_0292 Sequence alignment generation
+input: data_2975 Nucleic acid sequence (raw)
+input: format_1929 FASTA
+input: format_1930 FASTQ
+output: data_1383 Sequence alignment (nucleic acid)
+output: format_2573 SAM
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index c23e0c5..2af21d6 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -11,3 +11,6 @@ Reference:
   DOI: 10.1038/nmeth.1923
   PMID: 22388286
   URL: http://www.nature.com/nmeth/journal/v9/n4/abs/nmeth.1923.html
+Registry:
+  Name: SEQwiki
+  Entry: http://seqanswers.com/wiki/Bowtie

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bowtie2.git