[med-svn] [sprai] 01/03: Imported Upstream version 0.9.9.18+dfsg

[Afif Elghraoui]

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afif pushed a commit to branch master
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commit 6def97ef7acf044ece0d0aad905baa7a8d5de388
Author: Afif Elghraoui <afif at debian.org>
Date:   Wed Jun 22 05:48:45 2016 -0700

    Imported Upstream version 0.9.9.18+dfsg
---
 doc/_build/html/_sources/Download.txt | 6 +++++-
 doc/_build/html/_sources/index.txt    | 4 ++++
 makefile                              | 2 +-
 myrealigner.c                         | 2 +-
 wscript                               | 2 +-
 5 files changed, 12 insertions(+), 4 deletions(-)

diff --git a/doc/_build/html/_sources/Download.txt b/doc/_build/html/_sources/Download.txt
index 4c0f946..f104a7c 100644
--- a/doc/_build/html/_sources/Download.txt
+++ b/doc/_build/html/_sources/Download.txt
@@ -1,11 +1,15 @@
 ===========================
 Download The Latest Version
 ===========================
-http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.16.tar.gz
+http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.18.tar.gz
 
 ==============
 Older releases
 ==============
+http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.17.tar.gz
+
+http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.16.tar.gz
+
 http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.15.tar.gz
 
 http://zombie.cb.k.u-tokyo.ac.jp/sprai/dist/sprai-0.9.9.14.tar.gz
diff --git a/doc/_build/html/_sources/index.txt b/doc/_build/html/_sources/index.txt
index ece3817..d855879 100644
--- a/doc/_build/html/_sources/index.txt
+++ b/doc/_build/html/_sources/index.txt
@@ -20,6 +20,10 @@ Contents
 
 Changelogs
 =============
+2016.6.19 v0.9.9.18: myrealgner.c: initial colsize was changed. (Thanks to Takahiro Bino for a report)
+
+2016.6.3 v0.9.9.17: use_one_subread option in ec.spec: if not 0, use one subread per one molecule. (Thanks to Tomoaki Nishiyama for advice)
+
 2016.6.1 v0.9.9.16: ezez_vx1.pl & ezez4qsub_vx1.pl: set -o pipefail was added. 
 
 2016.5.31 v0.9.9.15: ezez4makefile_v4.pl was added. You can use Makefile when execute Sprai. See README. (Thanks to Tomoaki Nishiyama for code modifications)
diff --git a/makefile b/makefile
index efeae27..a1cb2ab 100644
--- a/makefile
+++ b/makefile
@@ -1,5 +1,5 @@
 APPNAME = 'sprai'
-VERSION = '0.9.9.17'
+VERSION = '0.9.9.18'
 
 PREFIX=$(PWD)
 COMPILED= \
diff --git a/myrealigner.c b/myrealigner.c
index 4512855..5bd0e16 100644
--- a/myrealigner.c
+++ b/myrealigner.c
@@ -1249,7 +1249,7 @@ int main(int argc, char **argv){
     unsigned long long MaxIns = 31;
     init_ElPool(&elpool, MaxFragSize); /* should be insufficient and trigger espansion at some point*/
     size_t colsize = (unsigned long long)(MaxFragSize*(1+MaxIns));
-    colsize = 100000; /* should be insufficient and trigger espansion at some point*/
+    //colsize = 1000000; /* should be insufficient and trigger espansion at some point*/
     init_colPool(&colpool,colsize);
   }
 
diff --git a/wscript b/wscript
index 7ca444a..a197d2e 100644
--- a/wscript
+++ b/wscript
@@ -1,5 +1,5 @@
 APPNAME = 'sprai'
-VERSION = '0.9.9.17'
+VERSION = '0.9.9.18'
 
 srcdir = '.'
 blddir = 'build'

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