[med-svn] [libsmithwaterman] 01/01: Update autoconf.patch

[Gert Wollny]

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gert-guest pushed a commit to branch master
in repository libsmithwaterman.

commit 84a3e9d7d093fedd6a200d3ad751eade7a93eb16
Author: Gert Wollny <gw.fossdev at gmail.com>
Date:   Wed Jun 22 13:00:37 2016 +0000

    Update autoconf.patch
---
 debian/patches/autoconf.patch | 31 ++++++++++++++++++++++++++-----
 1 file changed, 26 insertions(+), 5 deletions(-)

diff --git a/debian/patches/autoconf.patch b/debian/patches/autoconf.patch
index a144763..4ecc3ad 100644
--- a/debian/patches/autoconf.patch
+++ b/debian/patches/autoconf.patch
@@ -1,8 +1,11 @@
 --- /dev/null
 +++ b/Makefile.am
-@@ -0,0 +1,10 @@
+@@ -0,0 +1,16 @@
 +lib_LTLIBRARIES  = libsmithwaterman.la
-+libsmithwaterman_la_SOURCES = BandedSmithWaterman.cpp disorder.cpp IndelAllele.cpp LeftAlign.cpp Repeats.cpp SmithWatermanGotoh.cpp SWMain.cpp
++
++libsmithwatermandir=$(includedir)/smithwaterman
++libsmithwaterman_HEADERS=BandedSmithWaterman.h  IndelAllele.h  LeftAlign.h  Mosaik.h  Repeats.h  SmithWatermanGotoh.h  convert.h  disorder.h
++libsmithwaterman_la_SOURCES = BandedSmithWaterman.cpp disorder.cpp IndelAllele.cpp LeftAlign.cpp Repeats.cpp SmithWatermanGotoh.cpp
 +libsmithwaterman_la_LDFLAGS = -release @VERSION@
 +
 +libsmithwaterman_la_CPPFLAGS = $(INCLUDES)
@@ -11,9 +14,12 @@
 +smithwaterman_SOURCES = smithwaterman.cpp
 +LDADD = -lsmithwaterman
 +
++pkgconfigdir=$(libdir)/pkgconfig
++pkgconfig_DATA = libsmithwaterman.pc
++
 --- /dev/null
 +++ b/configure.ac
-@@ -0,0 +1,53 @@
+@@ -0,0 +1,54 @@
 +#                                               -*- Autoconf -*-
 +# Process this file with autoconf to produce a configure script.
 +
@@ -62,8 +68,9 @@
 +
 +AC_PROG_MAKE_SET
 +
-+AC_CONFIG_FILES([					\
-+	Makefile 						\
++AC_CONFIG_FILES([
++	Makefile 
++	libsmithwaterman.pc
 +	])
 +AC_OUTPUT
 +
@@ -136,3 +143,17 @@
 -clean:
 -	@echo "Cleaning up."
 -	@rm -f *.o $(PROGRAM) *~
+--- /dev/null
++++ b/libsmithwaterman.pc.in
+@@ -0,0 +1,11 @@
++prefix=@prefix@
++exec_prefix=${prefix}
++libdir=${exec_prefix}/lib
++includedir=${prefix}/include/smithwaterman
++
++
++Name: libsmithwaterman
++Version: @VERSION@
++Description: smith-waterman-gotoh alignment algorithm
++Libs: -L${libdir} -lsmithwaterman 
++Cflags: -I${includedir}

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