[med-svn] [r-bioc-limma] 02/06: Merge tag 'upstream/3.28.4+dfsg'

[Andreas Tille]

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tille pushed a commit to tag debian/3.28.10+dfsg-1
in repository r-bioc-limma.

commit 95d3d4ac5f68a73e59180e0d031a4666158550e5
Merge: b87d535 147341f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 22 17:29:22 2016 +0200

    Merge tag 'upstream/3.28.4+dfsg'
    
    Upstream version 3.28.4+dfsg

 DESCRIPTION                 |   6 +--
 NAMESPACE                   |   2 -
 R/alias2Symbol.R            |  20 +++----
 R/detectionPValues.R        |  41 --------------
 R/dups.R                    |   2 +-
 R/fitFDistRobustly.R        |   2 +-
 R/fitmixture.R              |  48 -----------------
 R/geneset-camera.R          |   9 ++--
 R/geneset-fry.R             |  10 ++--
 R/goana.R                   |  16 +++---
 R/loessFit.R                |   2 +-
 R/norm.R                    |   7 +--
 R/read.idat.R               | 127 ++++++++++++++------------------------------
 R/sepchannel.R              |   2 +-
 inst/doc/changelog.txt      |  41 +-------------
 inst/doc/intro.pdf          | Bin 46191 -> 46191 bytes
 man/03reading.Rd            |   1 -
 man/10GeneSetTests.Rd       |   2 +-
 man/camera.Rd               |  37 +++++--------
 man/detectionPValue.Rd      |  58 --------------------
 man/dupcor.Rd               |  40 +++-----------
 man/fitmixture.Rd           |  66 -----------------------
 man/logcosh.Rd              |  26 ---------
 man/propexpr.Rd             |  37 +++++--------
 man/read.idat.Rd            |  77 +++++++++------------------
 man/roast.Rd                |   6 +--
 man/romer.Rd                |   2 +-
 tests/limma-Tests.R         |   4 --
 tests/limma-Tests.Rout.save |  24 ++-------
 29 files changed, 143 insertions(+), 572 deletions(-)

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