[med-svn] [phipack] branch master updated (3a9eb47 -> 349ad47)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository phipack.

      from  3a9eb47   Update copyright information
       new  d9d52ff   Imported Upstream version 0.0.20160623
       new  9bc4653   Merge tag 'upstream/0.0.20160623'
       new  0ad53ae   Add get-orig-source script
       new  fdeb76f   Upstream did some source changes (speficically adding a license statement)
       new  349ad47   Upstream applied patch

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 ATP6.phy                             |   0
 README                               |  18 ++++
 debian/changelog                     |   2 +-
 debian/get-orig-source               |  42 +++++++++
 debian/patches/fix_build_error.patch |  24 -----
 debian/patches/series                |   1 -
 debian/rules                         |   2 +
 ppma_2_bmp                           | Bin 0 -> 58172 bytes
 src/COPYING.LESSER                   | 165 +++++++++++++++++++++++++++++++++++
 src/Makefile                         |   0
 src/fasta.c                          |  20 ++++-
 src/fasta.h                          |  17 ++++
 src/global.c                         |  16 ++++
 src/global.h                         |  15 ++++
 src/graphCode.c                      |  19 +++-
 src/graphCode.h                      |  16 ++++
 src/main.c                           |  19 +++-
 src/maxChi.c                         |  18 +++-
 src/maxChi.h                         |  16 ++++
 src/mem.c                            |  16 ++++
 src/mem.h                            |  16 +++-
 src/misc.c                           |  16 ++++
 src/misc.h                           |  16 ++++
 src/options.h                        |  16 ++++
 src/pairScore.c                      |  19 +++-
 src/pairScore.h                      |  15 ++++
 src/phylip.c                         |  17 +++-
 src/phylip.h                         |  16 ++++
 src/ppma_2_bmp/Makefile              |   0
 src/ppma_2_bmp/ppma_2_bmp            | Bin 0 -> 58172 bytes
 src/ppma_2_bmp/ppma_2_bmp.C          |   1 +
 src/ppma_2_bmp/ppma_io.C             |   1 +
 src/profile.c                        |  17 +++-
 src/profile_options.h                |  16 ++++
 src/queue.c                          |  19 +++-
 src/queue.h                          |  15 ++++
 src/seqManip.c                       |  19 +++-
 src/seqManip.h                       |  15 ++++
 src/stats.c                          |  19 +++-
 src/stats.h                          |  15 ++++
 40 files changed, 648 insertions(+), 46 deletions(-)
 mode change 100755 => 100644 ATP6.phy
 create mode 100755 debian/get-orig-source
 delete mode 100644 debian/patches/fix_build_error.patch
 create mode 100644 ppma_2_bmp
 create mode 100644 src/COPYING.LESSER
 mode change 100755 => 100644 src/Makefile
 mode change 100755 => 100644 src/ppma_2_bmp/Makefile
 create mode 100644 src/ppma_2_bmp/ppma_2_bmp

-- 
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